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Search of human proteins with 42822876
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|42822876 hypothetical protein LOC286343 [Homo sapiens]
(228 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|42822876 hypothetical protein LOC286343 [Homo sapiens] 454 e-128
gi|61966689 hypothetical protein LOC541468 [Homo sapiens] 108 4e-24
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 44 9e-05
gi|238624132 large conductance calcium-activated potassium chann... 44 1e-04
gi|238624130 large conductance calcium-activated potassium chann... 44 1e-04
gi|62388890 large conductance calcium-activated potassium channe... 44 1e-04
gi|26638650 large conductance calcium-activated potassium channe... 44 1e-04
gi|156546890 WW and C2 domain containing 2 [Homo sapiens] 44 1e-04
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 43 2e-04
gi|34452686 ring finger protein, LIM domain interacting [Homo sa... 42 3e-04
gi|34452684 ring finger protein, LIM domain interacting [Homo sa... 42 3e-04
gi|18375613 dachshund homolog 1 isoform b [Homo sapiens] 42 3e-04
gi|18375611 dachshund homolog 1 isoform a [Homo sapiens] 42 3e-04
gi|18375609 dachshund homolog 1 isoform c [Homo sapiens] 42 3e-04
gi|38348390 family with sequence similarity 89, member A [Homo s... 42 4e-04
gi|36796743 methylenetetrahydrofolate dehydrogenase (NADP+ depen... 42 6e-04
gi|24432032 zinc finger protein 503 [Homo sapiens] 41 7e-04
gi|194097354 G1 to S phase transition 1 isoform 2 [Homo sapiens] 41 0.001
gi|194018520 G1 to S phase transition 1 isoform 1 [Homo sapiens] 41 0.001
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 40 0.002
gi|22748877 basic helix-loop-helix domain containing, class B, 5... 39 0.004
gi|239757331 PREDICTED: hypothetical protein [Homo sapiens] 39 0.005
gi|239751841 PREDICTED: hypothetical protein [Homo sapiens] 39 0.005
gi|239746332 PREDICTED: hypothetical protein XP_002343733 [Homo ... 39 0.005
gi|158261990 CXXC finger 5 [Homo sapiens] 39 0.005
gi|4505959 POU domain, class 2, transcription factor 2 [Homo sap... 38 0.006
gi|110347455 Brn3b POU domain transcription factor [Homo sapiens] 38 0.006
gi|84570137 homeobox B3 [Homo sapiens] 38 0.006
gi|38683807 ankyrin repeat domain protein 17 isoform a [Homo sap... 37 0.011
gi|38683816 ankyrin repeat domain protein 17 isoform b [Homo sap... 37 0.011
>gi|42822876 hypothetical protein LOC286343 [Homo sapiens]
Length = 228
Score = 454 bits (1169), Expect = e-128
Identities = 228/228 (100%), Positives = 228/228 (100%)
Query: 1 MEDSPLPDLRDIELKLGRKVPESLVRSLRGEEPVPRERDRDPCGGSGGGGGGGGGCSSSS 60
MEDSPLPDLRDIELKLGRKVPESLVRSLRGEEPVPRERDRDPCGGSGGGGGGGGGCSSSS
Sbjct: 1 MEDSPLPDLRDIELKLGRKVPESLVRSLRGEEPVPRERDRDPCGGSGGGGGGGGGCSSSS 60
Query: 61 SYCSFPPSLSSSSSSSPTSGSPRGSHSSALERLETKLHLLRQEMVNLRATDVRLMRQLLV 120
SYCSFPPSLSSSSSSSPTSGSPRGSHSSALERLETKLHLLRQEMVNLRATDVRLMRQLLV
Sbjct: 61 SYCSFPPSLSSSSSSSPTSGSPRGSHSSALERLETKLHLLRQEMVNLRATDVRLMRQLLV 120
Query: 121 INESIESIKWMIEEKATITSRGSSLSGSLCSLLESQSTSLRGSYNSLHDGSDGLDGISVG 180
INESIESIKWMIEEKATITSRGSSLSGSLCSLLESQSTSLRGSYNSLHDGSDGLDGISVG
Sbjct: 121 INESIESIKWMIEEKATITSRGSSLSGSLCSLLESQSTSLRGSYNSLHDGSDGLDGISVG 180
Query: 181 SYLDTLADDVPGHQTPSDLDQFSDSSLIEDSQALHKRPKLDSEYYCFG 228
SYLDTLADDVPGHQTPSDLDQFSDSSLIEDSQALHKRPKLDSEYYCFG
Sbjct: 181 SYLDTLADDVPGHQTPSDLDQFSDSSLIEDSQALHKRPKLDSEYYCFG 228
>gi|61966689 hypothetical protein LOC541468 [Homo sapiens]
Length = 239
Score = 108 bits (270), Expect = 4e-24
Identities = 74/202 (36%), Positives = 105/202 (51%), Gaps = 52/202 (25%)
Query: 3 DSPLPDLRDIELKLGRKVPESLVRSLRGEEPVPRERDRDPCGGSGGGGGGGGGCSSSSSY 62
+S PDLRD+E K+GRK PE L+R LRGE C +S
Sbjct: 6 ESQTPDLRDVEGKVGRKTPEGLLRGLRGE------------------------CELGTSG 41
Query: 63 CSFPPSLSSSSSSSPTSGSPRGSHSSALERLETKLHLLRQEMVNLRATDVRLMRQLLVIN 122
P SS+ L K+ L+ E+ LRA DV++++QL+ +N
Sbjct: 42 ALLLPGASSTGHD-----------------LGDKIMALKMELAYLRAIDVKILQQLVTLN 84
Query: 123 ESIESIKWMIEEKATITSRGSSLSGSLCSLL-ESQSTSLRGSYNSLHDGS--DGLDGISV 179
E IE+++W++EE+ T+TS SSL+ S SL S S RGS++SL D S D LD +S+
Sbjct: 85 EGIEAVRWLLEERGTLTSHCSSLTSSQYSLTGGSPGRSRRGSWDSLPDTSTTDRLDSVSI 144
Query: 180 GSYLDTLADDVPGHQTPSDLDQ 201
GS+LDT+A PS+LD+
Sbjct: 145 GSFLDTVA--------PSELDE 158
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 44.3 bits (103), Expect = 9e-05
Identities = 24/45 (53%), Positives = 29/45 (64%)
Query: 45 GSGGGGGGGGGCSSSSSYCSFPPSLSSSSSSSPTSGSPRGSHSSA 89
G GG G GG CS++SS + P S SSSSSSS +S S S SS+
Sbjct: 2591 GDGGCGTGGRNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSS 2635
Score = 34.3 bits (77), Expect = 0.090
Identities = 22/52 (42%), Positives = 24/52 (46%)
Query: 38 RDRDPCGGSGGGGGGGGGCSSSSSYCSFPPSLSSSSSSSPTSGSPRGSHSSA 89
R P S SSSSS S S SSSSSSS +S S S SS+
Sbjct: 2608 RAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2659
Score = 33.5 bits (75), Expect = 0.15
Identities = 23/63 (36%), Positives = 25/63 (39%)
Query: 27 SLRGEEPVPRERDRDPCGGSGGGGGGGGGCSSSSSYCSFPPSLSSSSSSSPTSGSPRGSH 86
S R P S SSSSS S S SSSSSSS +S S S
Sbjct: 2606 SSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2665
Query: 87 SSA 89
SS+
Sbjct: 2666 SSS 2668
Score = 30.8 bits (68), Expect = 1.00
Identities = 20/44 (45%), Positives = 22/44 (50%)
Query: 46 SGGGGGGGGGCSSSSSYCSFPPSLSSSSSSSPTSGSPRGSHSSA 89
S SSSSS S S SSSSSSS +S S S SS+
Sbjct: 2626 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2669
Score = 30.8 bits (68), Expect = 1.00
Identities = 20/44 (45%), Positives = 22/44 (50%)
Query: 46 SGGGGGGGGGCSSSSSYCSFPPSLSSSSSSSPTSGSPRGSHSSA 89
S SSSSS S S SSSSSSS +S S S SS+
Sbjct: 2627 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2670
Score = 30.8 bits (68), Expect = 1.00
Identities = 20/44 (45%), Positives = 22/44 (50%)
Query: 46 SGGGGGGGGGCSSSSSYCSFPPSLSSSSSSSPTSGSPRGSHSSA 89
S SSSSS S S SSSSSSS +S S S SS+
Sbjct: 2628 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2671
Score = 30.8 bits (68), Expect = 1.00
Identities = 20/46 (43%), Positives = 22/46 (47%)
Query: 46 SGGGGGGGGGCSSSSSYCSFPPSLSSSSSSSPTSGSPRGSHSSALE 91
S SSSSS S S SSSSSSS +S S S SS +
Sbjct: 2629 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTD 2674
Score = 29.6 bits (65), Expect = 2.2
Identities = 20/46 (43%), Positives = 22/46 (47%)
Query: 46 SGGGGGGGGGCSSSSSYCSFPPSLSSSSSSSPTSGSPRGSHSSALE 91
S SSSSS S S SSSSSSS +S S S S+ E
Sbjct: 2630 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDE 2675
Score = 28.5 bits (62), Expect = 5.0
Identities = 19/43 (44%), Positives = 20/43 (46%)
Query: 46 SGGGGGGGGGCSSSSSYCSFPPSLSSSSSSSPTSGSPRGSHSS 88
S SSSSS S S SSSSSSS +S S SS
Sbjct: 2636 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSS 2678
>gi|238624132 large conductance calcium-activated potassium
channel subfamily M alpha member 1 isoform d [Homo
sapiens]
Length = 1219
Score = 43.9 bits (102), Expect = 1e-04
Identities = 27/53 (50%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 44 GGSGGGGGGGGGCSSSSS------YCSFPPSLSSSSSSSPTSGSPRGSHSSAL 90
GGS GGGGGGGG S S + S S SSSSSSS +S S S SS++
Sbjct: 9 GGSSGGGGGGGGSSLRMSSNIHANHLSLDASSSSSSSSSSSSSSSSSSSSSSV 61
>gi|238624130 large conductance calcium-activated potassium
channel subfamily M alpha member 1 isoform c [Homo
sapiens]
Length = 1236
Score = 43.9 bits (102), Expect = 1e-04
Identities = 27/53 (50%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 44 GGSGGGGGGGGGCSSSSS------YCSFPPSLSSSSSSSPTSGSPRGSHSSAL 90
GGS GGGGGGGG S S + S S SSSSSSS +S S S SS++
Sbjct: 9 GGSSGGGGGGGGSSLRMSSNIHANHLSLDASSSSSSSSSSSSSSSSSSSSSSV 61
>gi|62388890 large conductance calcium-activated potassium channel
subfamily M alpha member 1 isoform a [Homo sapiens]
Length = 1182
Score = 43.9 bits (102), Expect = 1e-04
Identities = 27/53 (50%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 44 GGSGGGGGGGGGCSSSSS------YCSFPPSLSSSSSSSPTSGSPRGSHSSAL 90
GGS GGGGGGGG S S + S S SSSSSSS +S S S SS++
Sbjct: 9 GGSSGGGGGGGGSSLRMSSNIHANHLSLDASSSSSSSSSSSSSSSSSSSSSSV 61
>gi|26638650 large conductance calcium-activated potassium channel
subfamily M alpha member 1 isoform b [Homo sapiens]
Length = 1178
Score = 43.9 bits (102), Expect = 1e-04
Identities = 27/53 (50%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 44 GGSGGGGGGGGGCSSSSS------YCSFPPSLSSSSSSSPTSGSPRGSHSSAL 90
GGS GGGGGGGG S S + S S SSSSSSS +S S S SS++
Sbjct: 9 GGSSGGGGGGGGSSLRMSSNIHANHLSLDASSSSSSSSSSSSSSSSSSSSSSV 61
>gi|156546890 WW and C2 domain containing 2 [Homo sapiens]
Length = 1192
Score = 43.5 bits (101), Expect = 1e-04
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 18/104 (17%)
Query: 81 SPRGSHSSALERLETKLHLLRQEMVNLRATDVRLMRQLLVINESIESIKWMIEEKATIT- 139
+P+ LERLE + L +E++++R T R + + L + E + + +EE +T
Sbjct: 362 TPQKRTQDELERLEAERQRLEEELLSVRGTPSRALAERLRLEERRKELLQKLEETTKLTT 421
Query: 140 ----------------SRGSSLSGSLCSLLESQSTSLRGSYNSL 167
S GSSL GSL S S +TS RGS NSL
Sbjct: 422 YLHSQLKSLSASTLSMSSGSSL-GSLASSRGSLNTSSRGSLNSL 464
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 43.1 bits (100), Expect = 2e-04
Identities = 32/83 (38%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 2 EDSPLPDLRDIELKL---GRKVPESLVRSLRGEEPVPRERDRDPCGGSGGGGGGGGGCSS 58
E S LP ++ LK P+ VR R EP P +R R S SS
Sbjct: 2564 EGSSLPVQPEVALKRVPSPTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSS 2623
Query: 59 SSSYCSFPPSLSSSSSSSPTSGS 81
SSS S S SSSSSSS +S S
Sbjct: 2624 SSSSSSSSSSSSSSSSSSSSSSS 2646
Score = 33.1 bits (74), Expect = 0.20
Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 23 SLVRSLRGEEPVPRERDRDPCGGSGGGGGGGGGCSSSSSYCSFPPSLSSSSSSSP---TS 79
SL RSL G P P+++ + P S G S + PP S SSSS P S
Sbjct: 774 SLRRSLSGSSPCPKQKSQTPPRRSRSGS------SQPKAKSRTPPRRSRSSSSPPPKQKS 827
Query: 80 GSP-RGSHSSA 89
+P R SHSS+
Sbjct: 828 KTPSRQSHSSS 838
Score = 30.0 bits (66), Expect = 1.7
Identities = 33/115 (28%), Positives = 47/115 (40%)
Query: 57 SSSSSYCSFPPSLSSSSSSSPTSGSPRGSHSSALERLETKLHLLRQEMVNLRATDVRLMR 116
SSSSS S S SSSSSSS +S S S S L + + + + + +R
Sbjct: 2532 SSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPKEAVR 2591
Query: 117 QLLVINESIESIKWMIEEKATITSRGSSLSGSLCSLLESQSTSLRGSYNSLHDGS 171
+ + K ++ +S SS S S S S S+S S +S S
Sbjct: 2592 EGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2646
>gi|34452686 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 42.4 bits (98), Expect = 3e-04
Identities = 28/59 (47%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 36 RERDRDPCGGSGGGGGGGGGCSSSSSYCSFPPSLSSSSSSSPTSGSPRGSHSSALERLE 94
R R GGSGGG G SSSSS S S SSSSSSSP+S S S ++ + E
Sbjct: 439 RAESRSGRGGSGGGSSSGSSSSSSSSSSS---SSSSSSSSSPSSSSGGESSETSSDLFE 494
Score = 39.3 bits (90), Expect = 0.003
Identities = 30/62 (48%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 38 RDRDPCGGSGGGGGGGGGCSSSSSYCSFPPSLSSSSSSSPTSGSPRGSHSSALERLETKL 97
R+ + G GG GGG SS SS S S SSSSSSS +S SP S SS E ET
Sbjct: 435 RNMERAESRSGRGGSGGGSSSGSS--SSSSSSSSSSSSSSSSSSP--SSSSGGESSETSS 490
Query: 98 HL 99
L
Sbjct: 491 DL 492
Score = 38.1 bits (87), Expect = 0.006
Identities = 24/52 (46%), Positives = 25/52 (48%)
Query: 36 RERDRDPCGGSGGGGGGGGGCSSSSSYCSFPPSLSSSSSSSPTSGSPRGSHS 87
R +R GG GGG SSSS S S SSSSSSS S S G S
Sbjct: 435 RNMERAESRSGRGGSGGGSSSGSSSSSSSSSSSSSSSSSSSSPSSSSGGESS 486
>gi|34452684 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 42.4 bits (98), Expect = 3e-04
Identities = 28/59 (47%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 36 RERDRDPCGGSGGGGGGGGGCSSSSSYCSFPPSLSSSSSSSPTSGSPRGSHSSALERLE 94
R R GGSGGG G SSSSS S S SSSSSSSP+S S S ++ + E
Sbjct: 439 RAESRSGRGGSGGGSSSGSSSSSSSSSSS---SSSSSSSSSPSSSSGGESSETSSDLFE 494
Score = 39.3 bits (90), Expect = 0.003
Identities = 30/62 (48%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 38 RDRDPCGGSGGGGGGGGGCSSSSSYCSFPPSLSSSSSSSPTSGSPRGSHSSALERLETKL 97
R+ + G GG GGG SS SS S S SSSSSSS +S SP S SS E ET
Sbjct: 435 RNMERAESRSGRGGSGGGSSSGSS--SSSSSSSSSSSSSSSSSSP--SSSSGGESSETSS 490
Query: 98 HL 99
L
Sbjct: 491 DL 492
Score = 38.1 bits (87), Expect = 0.006
Identities = 24/52 (46%), Positives = 25/52 (48%)
Query: 36 RERDRDPCGGSGGGGGGGGGCSSSSSYCSFPPSLSSSSSSSPTSGSPRGSHS 87
R +R GG GGG SSSS S S SSSSSSS S S G S
Sbjct: 435 RNMERAESRSGRGGSGGGSSSGSSSSSSSSSSSSSSSSSSSSPSSSSGGESS 486
>gi|18375613 dachshund homolog 1 isoform b [Homo sapiens]
Length = 558
Score = 42.4 bits (98), Expect = 3e-04
Identities = 26/48 (54%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 45 GSGGGGGG---GGGCSSSSSYCSFPPSLSSSSSSSPTSGSPRGSHSSA 89
GSGGGGGG GGG +SS+ + S SSSSSSS +S S S SS+
Sbjct: 114 GSGGGGGGISAGGGVASSTPINASTGSSSSSSSSSSSSSSSSSSSSSS 161
Score = 38.5 bits (88), Expect = 0.005
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 46 SGGGGGGGGGCSSSSSYCSFPPSLSSSSSSSPTSGSPRGSHSSA 89
S G GGGGGG S+ S P +S+ SSS +S S S SS+
Sbjct: 112 SNGSGGGGGGISAGGGVASSTPINASTGSSSSSSSSSSSSSSSS 155
Score = 37.7 bits (86), Expect = 0.008
Identities = 23/46 (50%), Positives = 26/46 (56%)
Query: 44 GGSGGGGGGGGGCSSSSSYCSFPPSLSSSSSSSPTSGSPRGSHSSA 89
GG GG GGG SS+ S S SSSSSSS +S S S SS+
Sbjct: 117 GGGGGISAGGGVASSTPINASTGSSSSSSSSSSSSSSSSSSSSSSS 162
Score = 31.6 bits (70), Expect = 0.59
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 44 GGSGGGGGGGGGCSSSSSYCSFPPSLSSSSSSSPTSG 80
GG G GGGGG S C+ P+L+++S+ S G
Sbjct: 85 GGGSSGNGGGGGGGGGGSNCN--PNLAAASNGSGGGG 119
>gi|18375611 dachshund homolog 1 isoform a [Homo sapiens]
Length = 706
Score = 42.4 bits (98), Expect = 3e-04
Identities = 26/48 (54%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 45 GSGGGGGG---GGGCSSSSSYCSFPPSLSSSSSSSPTSGSPRGSHSSA 89
GSGGGGGG GGG +SS+ + S SSSSSSS +S S S SS+
Sbjct: 114 GSGGGGGGISAGGGVASSTPINASTGSSSSSSSSSSSSSSSSSSSSSS 161
Score = 38.5 bits (88), Expect = 0.005
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 46 SGGGGGGGGGCSSSSSYCSFPPSLSSSSSSSPTSGSPRGSHSSA 89
S G GGGGGG S+ S P +S+ SSS +S S S SS+
Sbjct: 112 SNGSGGGGGGISAGGGVASSTPINASTGSSSSSSSSSSSSSSSS 155
Score = 37.7 bits (86), Expect = 0.008
Identities = 23/46 (50%), Positives = 26/46 (56%)
Query: 44 GGSGGGGGGGGGCSSSSSYCSFPPSLSSSSSSSPTSGSPRGSHSSA 89
GG GG GGG SS+ S S SSSSSSS +S S S SS+
Sbjct: 117 GGGGGISAGGGVASSTPINASTGSSSSSSSSSSSSSSSSSSSSSSS 162
Score = 31.6 bits (70), Expect = 0.59
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 44 GGSGGGGGGGGGCSSSSSYCSFPPSLSSSSSSSPTSG 80
GG G GGGGG S C+ P+L+++S+ S G
Sbjct: 85 GGGSSGNGGGGGGGGGGSNCN--PNLAAASNGSGGGG 119
>gi|18375609 dachshund homolog 1 isoform c [Homo sapiens]
Length = 504
Score = 42.4 bits (98), Expect = 3e-04
Identities = 26/48 (54%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 45 GSGGGGGG---GGGCSSSSSYCSFPPSLSSSSSSSPTSGSPRGSHSSA 89
GSGGGGGG GGG +SS+ + S SSSSSSS +S S S SS+
Sbjct: 114 GSGGGGGGISAGGGVASSTPINASTGSSSSSSSSSSSSSSSSSSSSSS 161
Score = 38.5 bits (88), Expect = 0.005
Identities = 20/44 (45%), Positives = 25/44 (56%)
Query: 46 SGGGGGGGGGCSSSSSYCSFPPSLSSSSSSSPTSGSPRGSHSSA 89
S G GGGGGG S+ S P +S+ SSS +S S S SS+
Sbjct: 112 SNGSGGGGGGISAGGGVASSTPINASTGSSSSSSSSSSSSSSSS 155
Score = 37.7 bits (86), Expect = 0.008
Identities = 23/46 (50%), Positives = 26/46 (56%)
Query: 44 GGSGGGGGGGGGCSSSSSYCSFPPSLSSSSSSSPTSGSPRGSHSSA 89
GG GG GGG SS+ S S SSSSSSS +S S S SS+
Sbjct: 117 GGGGGISAGGGVASSTPINASTGSSSSSSSSSSSSSSSSSSSSSSS 162
Score = 31.6 bits (70), Expect = 0.59
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 44 GGSGGGGGGGGGCSSSSSYCSFPPSLSSSSSSSPTSG 80
GG G GGGGG S C+ P+L+++S+ S G
Sbjct: 85 GGGSSGNGGGGGGGGGGSNCN--PNLAAASNGSGGGG 119
>gi|38348390 family with sequence similarity 89, member A [Homo
sapiens]
Length = 184
Score = 42.0 bits (97), Expect = 4e-04
Identities = 36/108 (33%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
Query: 25 VRSLR--GEEPVPRERDRDPCGGSGGGGGGGGGCSSSSSYCSFPPSLSSSSSSSPTSGSP 82
VR LR G P+P+ + GGG GG Y S P G
Sbjct: 16 VRGLRVDGLPPLPKSLS-GLLHSASGGGASGGWRHLERLYAQKSRIQDELSRGGPGGGGA 74
Query: 83 RGSHSSALE-RLETKLHLLRQEMVNLRATDVRLMRQLLVINESIESIK 129
R + A L+ L LLR+EMV LR D+ L+ QL + ESI+ K
Sbjct: 75 RAAALPAKPPNLDAALALLRKEMVGLRQLDMSLLCQLYSLYESIQEYK 122
>gi|36796743 methylenetetrahydrofolate dehydrogenase (NADP+
dependent) 1-like [Homo sapiens]
Length = 978
Score = 41.6 bits (96), Expect = 6e-04
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 13/115 (11%)
Query: 16 LGRKVPESLVRSLRG--EEPVPRERDRDPCGGSGGGGGGGGGCSSSSSYCSFPPSLSSSS 73
+G ++P ++R LR + P P R R PC S GGGGGGGG P + S
Sbjct: 1 MGTRLP-LVLRQLRRPPQPPGPPRRLRVPCRASSGGGGGGGGGREGLLGQRRPQDGQARS 59
Query: 74 SSSPTSGSPRGSHSSALERLETK---LHLLRQE-------MVNLRATDVRLMRQL 118
S SP +P S E ++ L LL+++ + ++A D LM+++
Sbjct: 60 SCSPGGRTPAARDSIVREVIQNSKEVLSLLQEKNPAFKPVLAIIQAGDDNLMQEI 114
>gi|24432032 zinc finger protein 503 [Homo sapiens]
Length = 646
Score = 41.2 bits (95), Expect = 7e-04
Identities = 25/53 (47%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 44 GGSGGGGGGGGGCSSSSSYCSFPPSL-------SSSSSSSPTSGSPRGSHSSA 89
GG GGGGGGGGG SS S P + + S SSS ++ SP G SSA
Sbjct: 193 GGGGGGGGGGGGVSSEKSGFRVPSATCQPFTPRTGSPSSSASACSPGGMLSSA 245
Score = 40.8 bits (94), Expect = 0.001
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 35 PRERDRDPCGGSGGGGGGGGGCSS-SSSYCSFPPSLSSSSSSSPTSGSPRGSHSS 88
P ++P GG GGGGGGGGG SS F ++ +P +GSP S S+
Sbjct: 181 PGSDKKEPGGGGGGGGGGGGGGGGVSSEKSGFRVPSATCQPFTPRTGSPSSSASA 235
Score = 35.8 bits (81), Expect = 0.031
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 46 SGGGGGGGGGCSSSSSYCSFPPSLSSSSSSSPTSGSPRGS 85
SGGGGGGGGG + ++ S +LS +SS SP GS
Sbjct: 16 SGGGGGGGGGGGADPAWTS---ALSGNSSGPGPGSSPAGS 52
Score = 29.3 bits (64), Expect = 2.9
Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 5 PLPDLRDIELKL-GRKVPESLVRSLRGE----EPVPRERDRDPCGGSGGGGGGGGGCSSS 59
PLP ++L +K P +L+ + +P P + GG GG GGG +
Sbjct: 95 PLPSTPVSPIELDAKKSPLALLAQTCSQIGKPDPSPSSKLSSVASNGGGAGGAGGGAAGD 154
Query: 60 SSYCSFPPSLSSSSSSSPTSGSP 82
S P LS +S P
Sbjct: 155 KDTKSGPLKLSDIGVEDKSSFKP 177
>gi|194097354 G1 to S phase transition 1 isoform 2 [Homo sapiens]
Length = 636
Score = 40.8 bits (94), Expect = 0.001
Identities = 28/72 (38%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 41 DPCGGSGGGGGGGGGCSS-SSSYCSFPPSLSSSSSSSPTSG--SPRGSHSSALERLETKL 97
DP G GGGGGGGGG SS SSS S P + +P G GS ++A E L
Sbjct: 2 DPGSGGGGGGGGGGGSSSGSSSSDSAPDCWDQADMEAPGPGPCGGGGSLAAAAEAQRENL 61
Query: 98 HLLRQEMVNLRA 109
+N+ A
Sbjct: 62 SAAFSRQLNVNA 73
>gi|194018520 G1 to S phase transition 1 isoform 1 [Homo sapiens]
Length = 637
Score = 40.8 bits (94), Expect = 0.001
Identities = 28/72 (38%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 41 DPCGGSGGGGGGGGGCSS-SSSYCSFPPSLSSSSSSSPTSG--SPRGSHSSALERLETKL 97
DP G GGGGGGGGG SS SSS S P + +P G GS ++A E L
Sbjct: 2 DPGSGGGGGGGGGGGSSSGSSSSDSAPDCWDQADMEAPGPGPCGGGGSLAAAAEAQRENL 61
Query: 98 HLLRQEMVNLRA 109
+N+ A
Sbjct: 62 SAAFSRQLNVNA 73
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 39.7 bits (91), Expect = 0.002
Identities = 53/208 (25%), Positives = 77/208 (37%), Gaps = 30/208 (14%)
Query: 19 KVPESLVRSLRGEEPVPRERDRDPCGGSGGGGGGGGGCS--------SSSSYCSFPPSLS 70
K P R + +R C CS SSSS CS S S
Sbjct: 2119 KKPRVHKRGSESSSDSDSDSERSSCSSRSSSSSSSSSCSHSRSGSSSSSSSSCSSASSSS 2178
Query: 71 SSSSSSPTSGSPRGSHSSALERLETKLHLLRQEMVNLRATDVRLMRQLLVINESIESIKW 130
SSS+SS +S S S S + E + R+ +++A D + L + +
Sbjct: 2179 SSSTSSSSSSSSSSSEESDSDEEEAQ---KRESTTHMKAYDEESVASLSTTQDETQDSFQ 2235
Query: 131 M---IEEKATITSRGSSLSGS-------LCSLLES-QSTSLRGSYNSLHDGSDGLDGISV 179
M E A I G L+ S + + L+S T L+G + S D +V
Sbjct: 2236 MNNGTPESAYILQGGYMLAASYWPKDRVMINRLDSICQTVLKGKWPS---ARRSYDANTV 2292
Query: 180 GSYLDTLADDVPGHQTPSDLDQFSDSSL 207
S+ T D PG T ++SD S+
Sbjct: 2293 ASFYTTKLLDSPGAAT-----EYSDPSV 2315
>gi|22748877 basic helix-loop-helix domain containing, class B, 5
[Homo sapiens]
Length = 381
Score = 38.9 bits (89), Expect = 0.004
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 42 PCGGSGGGGGGGGGCSSS----SSYCSFPPSLSSSSSSSPTSGSPRGSHSSALERLETKL 97
P GG GGGGGGG SS S S SSSSSSS S + + R ++
Sbjct: 196 PPGGLGGGGGGGSSSGSSGGGGGSGSGSGGSSSSSSSSSKKSKEQKALRLNINARERRRM 255
Query: 98 HLLRQEMVNLRA 109
H L + LRA
Sbjct: 256 HDLNDALDELRA 267
Score = 35.0 bits (79), Expect = 0.053
Identities = 42/156 (26%), Positives = 58/156 (37%), Gaps = 30/156 (19%)
Query: 4 SPLPDLRDIELKLGRKVPESLVRSLRGEEPVP------------RERDRDPCGGSGGGGG 51
S LP + LK G V G E P R DP G GGG
Sbjct: 117 SSLPAGAALCLKYGESASRGSVAESSGGEQSPDDDSDGRCELVLRAGVADPRASPGAGGG 176
Query: 52 G---GGGCSSSSSY--CSFPP----------SLSSSSSSSPTSGSPRGSHSSALERLETK 96
G GCS++ + S PP S S SS SGS G SS+ K
Sbjct: 177 GAKAAEGCSNAHLHGGASVPPGGLGGGGGGGSSSGSSGGGGGSGSGSGGSSSSSSSSSKK 236
Query: 97 LHLLRQEMVNLRATDVRLMRQLLVINESIESIKWMI 132
+ +N+ A + R M L N++++ ++ +I
Sbjct: 237 SKEQKALRLNINARERRRMHDL---NDALDELRAVI 269
>gi|239757331 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 38.5 bits (88), Expect = 0.005
Identities = 52/178 (29%), Positives = 69/178 (38%), Gaps = 24/178 (13%)
Query: 26 RSLRGEEPVPRERDRD-------PCGGSGGGGGGGGGCSSSSSYCSFPPSLSSSSSSSPT 78
RSLR R R R P G S GG GG S P S S+ S P
Sbjct: 54 RSLRWLRRRSRSRSRPFSSGPSGPSGPSSPGGPSSGGAS--------PASEGSAMSPPPP 105
Query: 79 SGSPRGSHSSALERLETKLHLLRQEMVNLRATDVRLMRQLLVINESIESIKWMIEEKATI 138
S S S R ++L LLR+ R+ + L+R L + S+ ++ +
Sbjct: 106 RSSSLRSRS---RRARSRLRLLRR----FRSRSLSLLRSLERLRSSLSRLRERLRRSRER 158
Query: 139 TSRGS-SLSGSLCSLLESQSTSLRGSYNSLHDGSDGLDGISVGSYLDTLADDVPGHQT 195
R S SLS S L S+S S S +G GLD + +L + D P T
Sbjct: 159 ERRRSRSLSRSRLRSLRSRSRSRSRSLCGSGEG-PGLDEVGRPVWLGSPRDRPPPQDT 215
>gi|239751841 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 38.5 bits (88), Expect = 0.005
Identities = 52/178 (29%), Positives = 69/178 (38%), Gaps = 24/178 (13%)
Query: 26 RSLRGEEPVPRERDRD-------PCGGSGGGGGGGGGCSSSSSYCSFPPSLSSSSSSSPT 78
RSLR R R R P G S GG GG S P S S+ S P
Sbjct: 54 RSLRWLRRRSRSRSRPFSSGPSGPSGPSSPGGPSSGGAS--------PASEGSAMSPPPP 105
Query: 79 SGSPRGSHSSALERLETKLHLLRQEMVNLRATDVRLMRQLLVINESIESIKWMIEEKATI 138
S S S R ++L LLR+ R+ + L+R L + S+ ++ +
Sbjct: 106 RSSSLRSRS---RRARSRLRLLRR----FRSRSLSLLRSLERLRSSLSRLRERLRRSRER 158
Query: 139 TSRGS-SLSGSLCSLLESQSTSLRGSYNSLHDGSDGLDGISVGSYLDTLADDVPGHQT 195
R S SLS S L S+S S S +G GLD + +L + D P T
Sbjct: 159 ERRRSRSLSRSRLRSLRSRSRSRSRSLCGSGEG-PGLDEVGRPVWLGSPRDRPPPQDT 215
>gi|239746332 PREDICTED: hypothetical protein XP_002343733 [Homo
sapiens]
Length = 231
Score = 38.5 bits (88), Expect = 0.005
Identities = 52/178 (29%), Positives = 69/178 (38%), Gaps = 24/178 (13%)
Query: 26 RSLRGEEPVPRERDRD-------PCGGSGGGGGGGGGCSSSSSYCSFPPSLSSSSSSSPT 78
RSLR R R R P G S GG GG S P S S+ S P
Sbjct: 54 RSLRWLRRRSRSRSRPFSSGPSGPSGPSSPGGPSSGGAS--------PASEGSAMSPPPP 105
Query: 79 SGSPRGSHSSALERLETKLHLLRQEMVNLRATDVRLMRQLLVINESIESIKWMIEEKATI 138
S S S R ++L LLR+ R+ + L+R L + S+ ++ +
Sbjct: 106 RSSSLRSRS---RRARSRLRLLRR----FRSRSLSLLRSLERLRSSLSRLRERLRRSRER 158
Query: 139 TSRGS-SLSGSLCSLLESQSTSLRGSYNSLHDGSDGLDGISVGSYLDTLADDVPGHQT 195
R S SLS S L S+S S S +G GLD + +L + D P T
Sbjct: 159 ERRRSRSLSRSRLRSLRSRSRSRSRSLCGSGEG-PGLDEVGRPVWLGSPRDRPPPQDT 215
>gi|158261990 CXXC finger 5 [Homo sapiens]
Length = 322
Score = 38.5 bits (88), Expect = 0.005
Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 29/155 (18%)
Query: 2 EDSPLPDLRDIELKLGRKVPESLVRSLRGEEPVPRERDRDPCGGSGGGGGGGGGCSSSSS 61
+D+P P+ R+ K G + E L +SLR P+ GGSGGG GG + ++
Sbjct: 51 DDTPPPERRN---KSGI-ISEPLNKSLRRSRPLSHYSSFGSSGGSGGGSMMGGESADKAT 106
Query: 62 YCSFPPSLSSS----------SSSSPTSGSPRGSHSSALERLETKLHLLRQEMVNLRATD 111
+ SL ++ S+PTS G+ +S L + E RAT+
Sbjct: 107 AAAAAASLLANGHDLAAAMAVDKSNPTSKHKSGAVASLLSKAE-------------RATE 153
Query: 112 VRLMRQLLV--INESIESIKWMIEEKATITSRGSS 144
+ QL + +S E +K +++E + S +
Sbjct: 154 LAAEGQLTLQQFAQSTEMLKRVVQEHLPLMSEAGA 188
>gi|4505959 POU domain, class 2, transcription factor 2 [Homo
sapiens]
Length = 463
Score = 38.1 bits (87), Expect = 0.006
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 4/48 (8%)
Query: 42 PCGGSGGGGGGGGGCSSSSSYCSF-PPSLSSSSSSSPTSGSPRGSHSS 88
P +GGGGGGGG +S S PP ++++S++P SP+GSHS+
Sbjct: 396 PSRTAGGGGGGGGAAPPLNSIPSVTPPPPATTNSTNP---SPQGSHSA 440
>gi|110347455 Brn3b POU domain transcription factor [Homo sapiens]
Length = 409
Score = 38.1 bits (87), Expect = 0.006
Identities = 23/49 (46%), Positives = 25/49 (51%), Gaps = 16/49 (32%)
Query: 44 GGSGGGGGGGGGCSSSSSYCSFPPSLSSSSSSSPTSGSPRGSHSSALER 92
GG GGGGGGGGG SSSSS +SGS G S A+ R
Sbjct: 57 GGGGGGGGGGGGRSSSSS----------------SSGSSGGGGSEAMRR 89
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 38.1 bits (87), Expect = 0.006
Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 32/136 (23%)
Query: 44 GGSGGGGGGGGGCSSSSSYCSFPPSLSSSSSSSPTSGSPRGSHSSA-LERLETKLHL--- 99
GGSGGGGGGGGG S PP ++S + R +++SA L LE + H
Sbjct: 166 GGSGGGGGGGGGGDKS------PPGSAASKRA-------RTAYTSAQLVELEKEFHFNRY 212
Query: 100 ----LRQEMVNLRATDVRLMRQLLVINESIESIKWMIEEKA---TITSRGSSLSGSLCSL 152
R EM NL + L + + I +K+ ++KA +S G S +GS
Sbjct: 213 LCRPRRVEMANL----LNLSERQIKIWFQNRRMKYKKDQKAKGLASSSGGPSPAGSPPQP 268
Query: 153 LESQSTSLRGSYNSLH 168
++S + G N+LH
Sbjct: 269 MQSTA----GFMNALH 280
>gi|38683807 ankyrin repeat domain protein 17 isoform a [Homo
sapiens]
Length = 2603
Score = 37.4 bits (85), Expect = 0.011
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 4 SPLPDLRDIELKLGRKVPESLV------RSLRGEEPVPRERDRDPCGGSGGGGGGGGGCS 57
SP +R +L L +K P+ R+ R D D GG GGGGGGGGG
Sbjct: 50 SPRGMVRVCDLLLKKKPPQQQHHKAKRNRTCRPPSSSESSSDSDNSGGGGGGGGGGGGGG 109
Query: 58 SSSS 61
+SS
Sbjct: 110 GTSS 113
Score = 35.0 bits (79), Expect = 0.053
Identities = 14/18 (77%), Positives = 16/18 (88%)
Query: 44 GGSGGGGGGGGGCSSSSS 61
GG GGGGGGGGG SS++S
Sbjct: 99 GGGGGGGGGGGGTSSNNS 116
Score = 33.9 bits (76), Expect = 0.12
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 37 ERDRDPCGGSGGGGGGGGGCSSSSS 61
+ D GG GGGGGGGGG +SS++
Sbjct: 91 DSDNSGGGGGGGGGGGGGGGTSSNN 115
>gi|38683816 ankyrin repeat domain protein 17 isoform b [Homo
sapiens]
Length = 2352
Score = 37.4 bits (85), Expect = 0.011
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 4 SPLPDLRDIELKLGRKVPESLV------RSLRGEEPVPRERDRDPCGGSGGGGGGGGGCS 57
SP +R +L L +K P+ R+ R D D GG GGGGGGGGG
Sbjct: 50 SPRGMVRVCDLLLKKKPPQQQHHKAKRNRTCRPPSSSESSSDSDNSGGGGGGGGGGGGGG 109
Query: 58 SSSS 61
+SS
Sbjct: 110 GTSS 113
Score = 35.0 bits (79), Expect = 0.053
Identities = 14/18 (77%), Positives = 16/18 (88%)
Query: 44 GGSGGGGGGGGGCSSSSS 61
GG GGGGGGGGG SS++S
Sbjct: 99 GGGGGGGGGGGGTSSNNS 116
Score = 33.9 bits (76), Expect = 0.12
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 37 ERDRDPCGGSGGGGGGGGGCSSSSS 61
+ D GG GGGGGGGGG +SS++
Sbjct: 91 DSDNSGGGGGGGGGGGGGGGTSSNN 115
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.130 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,886,243
Number of Sequences: 37866
Number of extensions: 521156
Number of successful extensions: 11872
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 214
Number of HSP's that attempted gapping in prelim test: 5836
Number of HSP's gapped (non-prelim): 3451
length of query: 228
length of database: 18,247,518
effective HSP length: 99
effective length of query: 129
effective length of database: 14,498,784
effective search space: 1870343136
effective search space used: 1870343136
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.