Guide to the Human Genome
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Name: C1orf190 Sequence: fasta or formatted (239aa) NCBI GI: 61966689
Description:

hypothetical protein LOC541468

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         16           2
 C cysteine            1.3          3           1
 D aspartate           6.7         16           2
 E glutamate           9.2         22           2
 F phenylalanine       1.7          4           1
 G glycine            11.3         27           2
 H histidine           1.3          3           1
 I isoleucine          2.5          6           1
 K lysine              3.3          8           1
 L leucine            12.1         29           3
 M methionine          1.7          4           1
 N asparagine          0.4          1           1
 P proline             5.9         14           2
 Q glutamine           3.3          8           2
 R arginine            7.1         17           2
 S serine              9.6         23           2
 T threonine           7.1         17           2
 V valine              5.4         13           1
 W tryptophan          2.5          6           1
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC541468 
C9orf150              0.181   hypothetical protein LOC286343 
PIAS2                 0.017   protein inhibitor of activated STAT X isoform alpha ...
PIAS2                 0.017   protein inhibitor of activated STAT X isoform beta [...
MUC4                  0.015   mucin 4 isoform a 
LOC649330             0.013   PREDICTED: heterogeneous nuclear ribonucleoprotein ...
LOC652665             0.013   PREDICTED: similar to heterogeneous nuclear ribonuc...
LOC649330             0.013   heterogeneous nuclear ribonucleoprotein C-like [Hom...
TNRC6A                0.011   trinucleotide repeat containing 6A 
WNT10A                0.009   wingless-type MMTV integration site family, member 1...
LOC100292655          0.009   PREDICTED: similar to armadillo repeat containing, ...
MLLT6                 0.009   myeloid/lymphoid or mixed-lineage leukemia (trithora...
LOC729915             0.009   PREDICTED: similar to Putative POM121-like protein ...
GCC1                  0.009   Golgi coiled-coil protein 1 
HNRNPC                0.007   heterogeneous nuclear ribonucleoprotein C isoform b...
HNRNPC                0.007   heterogeneous nuclear ribonucleoprotein C isoform a...
HNRNPC                0.007   heterogeneous nuclear ribonucleoprotein C isoform b...
HNRNPC                0.007   heterogeneous nuclear ribonucleoprotein C isoform a...
LOC100293962          0.007   PREDICTED: hypothetical protein 
LOC100293929          0.007   PREDICTED: hypothetical protein 
LOC100288366          0.007   PREDICTED: hypothetical protein 
LOC100288366          0.007   PREDICTED: hypothetical protein XP_002343207 
TNRC18                0.007   trinucleotide repeat containing 18 
EMID2                 0.007   EMI domain containing 2 
C1orf116              0.007   specifically androgen-regulated protein isoform 2 [...
C1orf116              0.007   specifically androgen-regulated protein isoform 1 [...
MAMSTR                0.007   MEF2 activating motif and SAP domain containing tra...
MAMSTR                0.007   MEF2 activating motif and SAP domain containing tran...
TRIP12                0.007   thyroid hormone receptor interactor 12 
CHSY3                 0.007   chondroitin sulfate synthase 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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