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Search of human proteins with 42789723
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|42789723 sister-of-mammalian grainyhead protein isoform 3
[Homo sapiens]
(509 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38049009 sister-of-mammalian grainyhead protein isoform 2 [Ho... 1041 0.0
gi|42789723 sister-of-mammalian grainyhead protein isoform 3 [Ho... 1041 0.0
gi|38049007 sister-of-mammalian grainyhead protein isoform 1 [Ho... 1041 0.0
gi|239735569 grainyhead-like 1 [Homo sapiens] 415 e-116
gi|170784817 transcription factor CP2-like 3 [Homo sapiens] 409 e-114
gi|7657299 LBP-9 [Homo sapiens] 103 3e-22
gi|189491632 upstream binding protein 1 (LBP-1a) isoform b [Homo... 98 2e-20
gi|21361278 transcription factor CP2 [Homo sapiens] 96 6e-20
gi|189491634 upstream binding protein 1 (LBP-1a) isoform a [Homo... 96 6e-20
gi|189491630 upstream binding protein 1 (LBP-1a) isoform a [Homo... 96 6e-20
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 38 0.019
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 38 0.019
gi|242117953 SH3 domain-containing protein C1orf113 isoform 1 [H... 33 0.61
gi|242117948 SH3 domain-containing protein C1orf113 isoform 2 [H... 33 0.61
gi|7705415 hook homolog 1 [Homo sapiens] 33 0.61
gi|5454102 transforming, acidic coiled-coil containing protein 3... 33 0.80
gi|7662228 synaptosomal-associated protein, 91kDa homolog [Homo ... 32 1.0
gi|35493801 ring finger protein 19 [Homo sapiens] 32 1.0
gi|35493782 ring finger protein 19 [Homo sapiens] 32 1.0
gi|50980301 myosin phosphatase-Rho interacting protein isoform 2... 32 1.0
gi|50980307 myosin phosphatase-Rho interacting protein isoform 1... 32 1.0
gi|45439359 triple functional domain (PTPRF interacting) [Homo s... 31 3.0
gi|40807477 retinoic acid induced 1 [Homo sapiens] 31 3.0
gi|112821681 G protein-regulated inducer of neurite outgrowth 1 ... 31 3.0
gi|225735595 RNA polymerase II associated protein 3 isoform 3 [H... 30 5.2
gi|225735591 RNA polymerase II associated protein 3 isoform 1 [H... 30 5.2
gi|239757437 PREDICTED: hypothetical protein [Homo sapiens] 30 6.8
gi|239751954 PREDICTED: hypothetical protein [Homo sapiens] 30 6.8
gi|239746437 PREDICTED: hypothetical protein XP_002344221 [Homo ... 30 6.8
gi|26667243 eyes absent 3 [Homo sapiens] 30 6.8
>gi|38049009 sister-of-mammalian grainyhead protein isoform 2 [Homo
sapiens]
Length = 602
Score = 1041 bits (2691), Expect = 0.0
Identities = 509/509 (100%), Positives = 509/509 (100%)
Query: 1 MEYETDLTPLESPTHLMKFLTENVSGTPEYPDLLKKNNLMSLEGALPTPGKAAPLPAGPS 60
MEYETDLTPLESPTHLMKFLTENVSGTPEYPDLLKKNNLMSLEGALPTPGKAAPLPAGPS
Sbjct: 94 MEYETDLTPLESPTHLMKFLTENVSGTPEYPDLLKKNNLMSLEGALPTPGKAAPLPAGPS 153
Query: 61 KLEAGSVDSYLLPTTDMYDNGSLNSLFESIHGVPPTQRWQPDSTFKDDPQESMLFPDILK 120
KLEAGSVDSYLLPTTDMYDNGSLNSLFESIHGVPPTQRWQPDSTFKDDPQESMLFPDILK
Sbjct: 154 KLEAGSVDSYLLPTTDMYDNGSLNSLFESIHGVPPTQRWQPDSTFKDDPQESMLFPDILK 213
Query: 121 TSPEPPCPEDYPSLKSDFEYTLGSPKAIHIKSGESPMAYLNKGQFYPVTLRTPAGGKGLA 180
TSPEPPCPEDYPSLKSDFEYTLGSPKAIHIKSGESPMAYLNKGQFYPVTLRTPAGGKGLA
Sbjct: 214 TSPEPPCPEDYPSLKSDFEYTLGSPKAIHIKSGESPMAYLNKGQFYPVTLRTPAGGKGLA 273
Query: 181 LSSNKVKSVVMVVFDNEKVPVEQLRFWKHWHSRQPTAKQRVIDVADCKENFNTVEHIEEV 240
LSSNKVKSVVMVVFDNEKVPVEQLRFWKHWHSRQPTAKQRVIDVADCKENFNTVEHIEEV
Sbjct: 274 LSSNKVKSVVMVVFDNEKVPVEQLRFWKHWHSRQPTAKQRVIDVADCKENFNTVEHIEEV 333
Query: 241 AYNALSFVWNVNEEAKVFIGVNCLSTDFSSQKGVKGVPLNLQIDTYDCGLGTERLVHRAV 300
AYNALSFVWNVNEEAKVFIGVNCLSTDFSSQKGVKGVPLNLQIDTYDCGLGTERLVHRAV
Sbjct: 334 AYNALSFVWNVNEEAKVFIGVNCLSTDFSSQKGVKGVPLNLQIDTYDCGLGTERLVHRAV 393
Query: 301 CQIKIFCDKGAERKMRDDERKQFRRKVKCPDSSNSGVKGCLLSGFRGNETTYLRPETDLE 360
CQIKIFCDKGAERKMRDDERKQFRRKVKCPDSSNSGVKGCLLSGFRGNETTYLRPETDLE
Sbjct: 394 CQIKIFCDKGAERKMRDDERKQFRRKVKCPDSSNSGVKGCLLSGFRGNETTYLRPETDLE 453
Query: 361 TPPVLFIPNVHFSSLQRSGGAAPSAGPSSSNRLPLKRTCSPFTEEFEPLPSKQAKEGDLQ 420
TPPVLFIPNVHFSSLQRSGGAAPSAGPSSSNRLPLKRTCSPFTEEFEPLPSKQAKEGDLQ
Sbjct: 454 TPPVLFIPNVHFSSLQRSGGAAPSAGPSSSNRLPLKRTCSPFTEEFEPLPSKQAKEGDLQ 513
Query: 421 RVLLYVRRETEEVFDALMLKTPDLKGLRNAISEKYGFPEENIYKVYKKCKRGILVNMDNN 480
RVLLYVRRETEEVFDALMLKTPDLKGLRNAISEKYGFPEENIYKVYKKCKRGILVNMDNN
Sbjct: 514 RVLLYVRRETEEVFDALMLKTPDLKGLRNAISEKYGFPEENIYKVYKKCKRGILVNMDNN 573
Query: 481 IIQHYSNHVAFLLDMGELDGKIQIILKEL 509
IIQHYSNHVAFLLDMGELDGKIQIILKEL
Sbjct: 574 IIQHYSNHVAFLLDMGELDGKIQIILKEL 602
>gi|42789723 sister-of-mammalian grainyhead protein isoform 3 [Homo
sapiens]
Length = 509
Score = 1041 bits (2691), Expect = 0.0
Identities = 509/509 (100%), Positives = 509/509 (100%)
Query: 1 MEYETDLTPLESPTHLMKFLTENVSGTPEYPDLLKKNNLMSLEGALPTPGKAAPLPAGPS 60
MEYETDLTPLESPTHLMKFLTENVSGTPEYPDLLKKNNLMSLEGALPTPGKAAPLPAGPS
Sbjct: 1 MEYETDLTPLESPTHLMKFLTENVSGTPEYPDLLKKNNLMSLEGALPTPGKAAPLPAGPS 60
Query: 61 KLEAGSVDSYLLPTTDMYDNGSLNSLFESIHGVPPTQRWQPDSTFKDDPQESMLFPDILK 120
KLEAGSVDSYLLPTTDMYDNGSLNSLFESIHGVPPTQRWQPDSTFKDDPQESMLFPDILK
Sbjct: 61 KLEAGSVDSYLLPTTDMYDNGSLNSLFESIHGVPPTQRWQPDSTFKDDPQESMLFPDILK 120
Query: 121 TSPEPPCPEDYPSLKSDFEYTLGSPKAIHIKSGESPMAYLNKGQFYPVTLRTPAGGKGLA 180
TSPEPPCPEDYPSLKSDFEYTLGSPKAIHIKSGESPMAYLNKGQFYPVTLRTPAGGKGLA
Sbjct: 121 TSPEPPCPEDYPSLKSDFEYTLGSPKAIHIKSGESPMAYLNKGQFYPVTLRTPAGGKGLA 180
Query: 181 LSSNKVKSVVMVVFDNEKVPVEQLRFWKHWHSRQPTAKQRVIDVADCKENFNTVEHIEEV 240
LSSNKVKSVVMVVFDNEKVPVEQLRFWKHWHSRQPTAKQRVIDVADCKENFNTVEHIEEV
Sbjct: 181 LSSNKVKSVVMVVFDNEKVPVEQLRFWKHWHSRQPTAKQRVIDVADCKENFNTVEHIEEV 240
Query: 241 AYNALSFVWNVNEEAKVFIGVNCLSTDFSSQKGVKGVPLNLQIDTYDCGLGTERLVHRAV 300
AYNALSFVWNVNEEAKVFIGVNCLSTDFSSQKGVKGVPLNLQIDTYDCGLGTERLVHRAV
Sbjct: 241 AYNALSFVWNVNEEAKVFIGVNCLSTDFSSQKGVKGVPLNLQIDTYDCGLGTERLVHRAV 300
Query: 301 CQIKIFCDKGAERKMRDDERKQFRRKVKCPDSSNSGVKGCLLSGFRGNETTYLRPETDLE 360
CQIKIFCDKGAERKMRDDERKQFRRKVKCPDSSNSGVKGCLLSGFRGNETTYLRPETDLE
Sbjct: 301 CQIKIFCDKGAERKMRDDERKQFRRKVKCPDSSNSGVKGCLLSGFRGNETTYLRPETDLE 360
Query: 361 TPPVLFIPNVHFSSLQRSGGAAPSAGPSSSNRLPLKRTCSPFTEEFEPLPSKQAKEGDLQ 420
TPPVLFIPNVHFSSLQRSGGAAPSAGPSSSNRLPLKRTCSPFTEEFEPLPSKQAKEGDLQ
Sbjct: 361 TPPVLFIPNVHFSSLQRSGGAAPSAGPSSSNRLPLKRTCSPFTEEFEPLPSKQAKEGDLQ 420
Query: 421 RVLLYVRRETEEVFDALMLKTPDLKGLRNAISEKYGFPEENIYKVYKKCKRGILVNMDNN 480
RVLLYVRRETEEVFDALMLKTPDLKGLRNAISEKYGFPEENIYKVYKKCKRGILVNMDNN
Sbjct: 421 RVLLYVRRETEEVFDALMLKTPDLKGLRNAISEKYGFPEENIYKVYKKCKRGILVNMDNN 480
Query: 481 IIQHYSNHVAFLLDMGELDGKIQIILKEL 509
IIQHYSNHVAFLLDMGELDGKIQIILKEL
Sbjct: 481 IIQHYSNHVAFLLDMGELDGKIQIILKEL 509
>gi|38049007 sister-of-mammalian grainyhead protein isoform 1 [Homo
sapiens]
Length = 607
Score = 1041 bits (2691), Expect = 0.0
Identities = 509/509 (100%), Positives = 509/509 (100%)
Query: 1 MEYETDLTPLESPTHLMKFLTENVSGTPEYPDLLKKNNLMSLEGALPTPGKAAPLPAGPS 60
MEYETDLTPLESPTHLMKFLTENVSGTPEYPDLLKKNNLMSLEGALPTPGKAAPLPAGPS
Sbjct: 99 MEYETDLTPLESPTHLMKFLTENVSGTPEYPDLLKKNNLMSLEGALPTPGKAAPLPAGPS 158
Query: 61 KLEAGSVDSYLLPTTDMYDNGSLNSLFESIHGVPPTQRWQPDSTFKDDPQESMLFPDILK 120
KLEAGSVDSYLLPTTDMYDNGSLNSLFESIHGVPPTQRWQPDSTFKDDPQESMLFPDILK
Sbjct: 159 KLEAGSVDSYLLPTTDMYDNGSLNSLFESIHGVPPTQRWQPDSTFKDDPQESMLFPDILK 218
Query: 121 TSPEPPCPEDYPSLKSDFEYTLGSPKAIHIKSGESPMAYLNKGQFYPVTLRTPAGGKGLA 180
TSPEPPCPEDYPSLKSDFEYTLGSPKAIHIKSGESPMAYLNKGQFYPVTLRTPAGGKGLA
Sbjct: 219 TSPEPPCPEDYPSLKSDFEYTLGSPKAIHIKSGESPMAYLNKGQFYPVTLRTPAGGKGLA 278
Query: 181 LSSNKVKSVVMVVFDNEKVPVEQLRFWKHWHSRQPTAKQRVIDVADCKENFNTVEHIEEV 240
LSSNKVKSVVMVVFDNEKVPVEQLRFWKHWHSRQPTAKQRVIDVADCKENFNTVEHIEEV
Sbjct: 279 LSSNKVKSVVMVVFDNEKVPVEQLRFWKHWHSRQPTAKQRVIDVADCKENFNTVEHIEEV 338
Query: 241 AYNALSFVWNVNEEAKVFIGVNCLSTDFSSQKGVKGVPLNLQIDTYDCGLGTERLVHRAV 300
AYNALSFVWNVNEEAKVFIGVNCLSTDFSSQKGVKGVPLNLQIDTYDCGLGTERLVHRAV
Sbjct: 339 AYNALSFVWNVNEEAKVFIGVNCLSTDFSSQKGVKGVPLNLQIDTYDCGLGTERLVHRAV 398
Query: 301 CQIKIFCDKGAERKMRDDERKQFRRKVKCPDSSNSGVKGCLLSGFRGNETTYLRPETDLE 360
CQIKIFCDKGAERKMRDDERKQFRRKVKCPDSSNSGVKGCLLSGFRGNETTYLRPETDLE
Sbjct: 399 CQIKIFCDKGAERKMRDDERKQFRRKVKCPDSSNSGVKGCLLSGFRGNETTYLRPETDLE 458
Query: 361 TPPVLFIPNVHFSSLQRSGGAAPSAGPSSSNRLPLKRTCSPFTEEFEPLPSKQAKEGDLQ 420
TPPVLFIPNVHFSSLQRSGGAAPSAGPSSSNRLPLKRTCSPFTEEFEPLPSKQAKEGDLQ
Sbjct: 459 TPPVLFIPNVHFSSLQRSGGAAPSAGPSSSNRLPLKRTCSPFTEEFEPLPSKQAKEGDLQ 518
Query: 421 RVLLYVRRETEEVFDALMLKTPDLKGLRNAISEKYGFPEENIYKVYKKCKRGILVNMDNN 480
RVLLYVRRETEEVFDALMLKTPDLKGLRNAISEKYGFPEENIYKVYKKCKRGILVNMDNN
Sbjct: 519 RVLLYVRRETEEVFDALMLKTPDLKGLRNAISEKYGFPEENIYKVYKKCKRGILVNMDNN 578
Query: 481 IIQHYSNHVAFLLDMGELDGKIQIILKEL 509
IIQHYSNHVAFLLDMGELDGKIQIILKEL
Sbjct: 579 IIQHYSNHVAFLLDMGELDGKIQIILKEL 607
>gi|239735569 grainyhead-like 1 [Homo sapiens]
Length = 618
Score = 415 bits (1067), Expect = e-116
Identities = 226/441 (51%), Positives = 292/441 (66%), Gaps = 15/441 (3%)
Query: 77 MYDNGSLNSLFESIHGVPPTQRWQPDSTFKDDPQESM---LFPDILKTSPEPPCPEDY-- 131
++D F S P QR PDSTF + +E + FP L EDY
Sbjct: 185 VFDRNLNTDQFSSGAQAPNAQRRTPDSTFSETFKEGVQEVFFPSDLSLRMPGMNSEDYVF 244
Query: 132 -PSLKSDFEYTLGSPKAIHIKSGESPMAYLNKGQFYPVTLRTPAGGKGLALSSNKVKSVV 190
++FEYTL + K++ K G+S M YLNKGQFYP+TL+ + +G+ +KV+SV+
Sbjct: 245 DSVSGNNFEYTLEASKSLRQKPGDSTMTYLNKGQFYPITLKEVSSSEGIHHPISKVRSVI 304
Query: 191 MVVFDNEKVPVEQLRFWKHWHSRQPTAKQRVIDVADCKENFNTVEHIEEVAYNALSFVWN 250
MVVF +K +QLR WK+WHSRQ TAKQR ID+AD KE+FNT+ +IEE+AYNA+SF W+
Sbjct: 305 MVVFAEDKSREDQLRHWKYWHSRQHTAKQRCIDIADYKESFNTISNIEEIAYNAISFTWD 364
Query: 251 VNEEAKVFIGVNCLSTDFSSQKGVKGVPLNLQIDTYDCGLGTERLVHRAVCQIKIFCDKG 310
+N+EAKVFI VNCLSTDFSSQKGVKG+PLN+Q+DTY + + VHRA CQIK+FCDKG
Sbjct: 365 INDEAKVFISVNCLSTDFSSQKGVKGLPLNIQVDTYSYNNRSNKPVHRAYCQIKVFCDKG 424
Query: 311 AERKMRDDERKQFRRKVKCPDSSNSGVKGCLLSGFRGNETTYLRPETDLETPPVLFIPNV 370
AERK+RD+ERKQ +RKV S VK LL + + T +P DL+T PVLFIP+V
Sbjct: 425 AERKIRDEERKQSKRKV-------SDVKVPLLPSHKRMDITVFKPFIDLDTQPVLFIPDV 477
Query: 371 HFSSLQRSGGAAPSAGPS-SSNRLPLKRTCSPFTEEFEPLPS-KQAKEGDLQRVLLYVRR 428
HF++LQR P A LKR ++F PS K A+ + +RVLLYVR+
Sbjct: 478 HFANLQRGTHVLPIASEELEGEGSVLKRGPYGTEDDFAVPPSTKLARIEEPKRVLLYVRK 537
Query: 429 ETEEVFDALMLKTPDLKGLRNAISEKYGFPEENIYKVYKKCKRGILVNMDNNIIQHYSNH 488
E+EEVFDALMLKTP LKGL AIS+KY P + I K++KKCK+GILVNMD+NI++HYSN
Sbjct: 538 ESEEVFDALMLKTPSLKGLMEAISDKYDVPHDKIGKIFKKCKKGILVNMDDNIVKHYSNE 597
Query: 489 VAFLLDMGELDGKIQIILKEL 509
F L + E G ++ L E+
Sbjct: 598 DTFQLQIEEAGGSYKLTLTEI 618
>gi|170784817 transcription factor CP2-like 3 [Homo sapiens]
Length = 625
Score = 409 bits (1051), Expect = e-114
Identities = 219/424 (51%), Positives = 286/424 (67%), Gaps = 17/424 (4%)
Query: 97 QRWQPDSTFKDDPQESMLFPDILKTSPEPPCPEDY---PSLKSDFEYTLGSPKAIHIKSG 153
QR PDST+ + +++ K E+Y + F+YTL + K++ K G
Sbjct: 208 QRSTPDSTYSESFKDAATE----KFRSASVGAEEYMYDQTSSGTFQYTLEATKSLRQKQG 263
Query: 154 ESPMAYLNKGQFYPVTLRTPAGGKGLALSSNKVKSVVMVVFDNEKVPVEQLRFWKHWHSR 213
E PM YLNKGQFY +TL K +KV+SVVMVVF +K EQL++WK+WHSR
Sbjct: 264 EGPMTYLNKGQFYAITLSETGDNKCFRHPISKVRSVVMVVFSEDKNRDEQLKYWKYWHSR 323
Query: 214 QPTAKQRVIDVADCKENFNTVEHIEEVAYNALSFVWNVNEEAKVFIGVNCLSTDFSSQKG 273
Q TAKQRV+D+AD KE+FNT+ +IEE+AYNA+SF W+VNEEAK+FI VNCLSTDFSSQKG
Sbjct: 324 QHTAKQRVLDIADYKESFNTIGNIEEIAYNAVSFTWDVNEEAKIFITVNCLSTDFSSQKG 383
Query: 274 VKGVPLNLQIDTYDCGLGTERLVHRAVCQIKIFCDKGAERKMRDDERKQFRRKVK----- 328
VKG+PL +QIDTY + + +HRA CQIK+FCDKGAERK+RD+ERKQ R+K K
Sbjct: 384 VKGLPLMIQIDTYSYNNRSNKPIHRAYCQIKVFCDKGAERKIRDEERKQNRKKGKGQASQ 443
Query: 329 --CPDSSNSGVKGCLLSGFRGNETTYLRPETDLETPPVLFIPNVHFSSLQRSGGAAPSAG 386
C SS+ + L + ++ TY + DL + PVLFIP+VHF++LQR+G +
Sbjct: 444 TQCNSSSDGKLAAIPLQ--KKSDITYFKTMPDLHSQPVLFIPDVHFANLQRTGQVYYNTD 501
Query: 387 PS-SSNRLPLKRTCSPFTEEFEPLPSKQAKEGDLQRVLLYVRRETEEVFDALMLKTPDLK 445
+ +KR P EEF P+PSKQ KE +RVLLYVR+ET++VFDALMLK+P +K
Sbjct: 502 DEREGGSVLVKRMFRPMEEEFGPVPSKQMKEEGTKRVLLYVRKETDDVFDALMLKSPTVK 561
Query: 446 GLRNAISEKYGFPEENIYKVYKKCKRGILVNMDNNIIQHYSNHVAFLLDMGELDGKIQII 505
GL AISEKYG P E I K+YKK K+GILVNMD+NII+HYSN F+L+M + ++
Sbjct: 562 GLMEAISEKYGLPVEKIAKLYKKSKKGILVNMDDNIIEHYSNEDTFILNMESMVEGFKVT 621
Query: 506 LKEL 509
L E+
Sbjct: 622 LMEI 625
>gi|7657299 LBP-9 [Homo sapiens]
Length = 479
Score = 103 bits (258), Expect = 3e-22
Identities = 108/448 (24%), Positives = 189/448 (42%), Gaps = 68/448 (15%)
Query: 124 EPPCPEDYPSLKSDFEYTLGSPKAIHIKSGESPMAYLNKGQFYPVTL-RTPAGGKGLALS 182
EP + + +Y L + + +K E + YLN+GQ Y + L G L+
Sbjct: 33 EPQLSPENEARLPPLQYVLCAATSPAVKLHEETLTYLNQGQSYEIRLLENRKLGDFQDLN 92
Query: 183 SNKVKSVVMVVFDNEKVPVEQLRFWKHWHSRQPTAKQRVIDVADCKENFNTVE-HIEEVA 241
+ VKS++ VVF + ++ + + + W +P R++D+ D + ++
Sbjct: 93 TKYVKSIIRVVFHDRRLQYTEHQQLEGWRWSRPG--DRILDI-DIPLSVGILDPRASPTQ 149
Query: 242 YNALSFVWNVNEEAKVFIGVNCLSTDFSSQK--GVKGVPLNLQIDTY---DCGLGTERLV 296
NA+ F+W+ + A FI V+C+ST+F+ +K G KGVP +QIDT+ + G TE L
Sbjct: 150 LNAVEFLWDPAKRASAFIQVHCISTEFTPRKHGGEKGVPFRVQIDTFKQNENGEYTEHL- 208
Query: 297 HRAVCQIKIFCDKGAERKMRDDERKQFRRKVKCPDSSNSGVKGCLLS------------- 343
H A CQIK+F KGA+RK + D K +R + + + +L+
Sbjct: 209 HSASCQIKVFKPKGADRKQKTDREKMEKRTAQEKEKYQPSYETTILTECSPWPDVAYQVN 268
Query: 344 -----GFRGNETTY------LRPETDLETPPV---------------LFIPNVHFSSLQR 377
+ G+ ++ P +E PV ++ FS R
Sbjct: 269 SAPSPSYNGSPNSFGLGEGNASPTHPVEALPVGSDHLLPSASIQDAQQWLHRNRFSQFCR 328
Query: 378 SGGAAPSAGPSSSNRLPLKRTCSPF--TEEFEPLPSKQAK---------EGDLQRVLLYV 426
+ A +R L + C P F + + + E + RV L
Sbjct: 329 LFASFSGADLLKMSRDDLVQICGPADGIRLFNAIKGRNVRPKMTIYVCQELEQNRVPLQQ 388
Query: 427 RRETE-----EVFDALMLKTPDLKGLRNAISEKYGFPEENIYKVYKKCKRGILVNMDNNI 481
+R+ V+ A+ L+ L I+ Y ++I++VY++ GI V + N +
Sbjct: 389 KRDGSGDSNLSVYHAIFLEELTTLELIEKIANLYSISPQHIHRVYRQGPTGIHVVVSNEM 448
Query: 482 IQHYSNHVAFLLD--MGELDGKIQIILK 507
+Q++ + F+L E + IILK
Sbjct: 449 VQNFQDESCFVLSTIKAESNDGYHIILK 476
>gi|189491632 upstream binding protein 1 (LBP-1a) isoform b [Homo
sapiens]
Length = 504
Score = 97.8 bits (242), Expect = 2e-20
Identities = 107/454 (23%), Positives = 185/454 (40%), Gaps = 77/454 (16%)
Query: 128 PEDYPSLKSDFEYTLGSPKAIHIKSGESPMAYLNKGQFYPVT-LRTPAGGKGLALSSNKV 186
P D + F+Y + + + +K + + YLN+GQ Y + L G ++ V
Sbjct: 54 PLDGETEHPPFQYVMCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKMGDMPEINGKLV 113
Query: 187 KSVVMVVFDNEKVPVEQLRFWKHWHSRQPTAKQRVIDVADCKENFNTVEHIEEVAYNALS 246
KS++ VVF + ++ + + + W +P + +D+ +T + ++ NA+
Sbjct: 114 KSIIRVVFHDRRLQYTEHQQLEGWKWNRPGDRLLDLDIPMSVGIIDTRTNPSQL--NAVE 171
Query: 247 FVWNVNEEAKVFIGVNCLSTDFSSQK--GVKGVPLNLQIDTY---DCGLGTERLVHRAVC 301
F+W+ + FI V+C+ST+F+ +K G KGVP +Q+DT+ + G T+ L H A C
Sbjct: 172 FLWDPAKRTSAFIQVHCISTEFTPRKHGGEKGVPFRIQVDTFKQNENGEYTDHL-HSASC 230
Query: 302 QIKIFCDKGAERKMRDDERKQFRRKVKCPDSSNSGVKGCLL---SGFRGNETTYLR---- 354
QIK+F KGA+RK + D K +R + +L S + T Y+
Sbjct: 231 QIKVFKPKGADRKQKTDREKMEKRTAHEKEKYQPSYDTTILTECSPWPDAPTAYVNNSPS 290
Query: 355 PETDLETP--PVLFIPNVHFSSLQRSGGAA---------PSAGPSSSNRLPLKRTCSPFT 403
P +P +P+ + SS G A PSA + + LK S +T
Sbjct: 291 PAPTFTSPQQSTCSVPDSNSSSPNHQGDGASQTSGEQIQPSATIQETQQWLLKNRFSSYT 350
Query: 404 EEFEPLPS----KQAKEGDLQ---------------------RVLLYVRRETEE------ 432
F K KE +Q R+ +YV RE
Sbjct: 351 RLFSNFSGADLLKLTKEDLVQICGAADGIRLYNSLKSRSVRPRLTIYVCREQPSSTVLQG 410
Query: 433 -----------------VFDALMLKTPDLKGLRNAISEKYGFPEENIYKVYKKCKRGILV 475
V+ A+ L+ + ++ + P I +VY++ GI +
Sbjct: 411 QQQAASSASENGSGAPYVYHAIYLEEMIASEVARKLALVFNIPLHQINQVYRQGPTGIHI 470
Query: 476 NMDNNIIQHYSNHVAFLLD--MGELDGKIQIILK 507
+ + ++Q++ + FL E I IILK
Sbjct: 471 LVSDQMVQNFQDESCFLFSTVKAESSDGIHIILK 504
>gi|21361278 transcription factor CP2 [Homo sapiens]
Length = 502
Score = 96.3 bits (238), Expect = 6e-20
Identities = 66/209 (31%), Positives = 108/209 (51%), Gaps = 11/209 (5%)
Query: 124 EPPCPEDYPSLKSDFEYTLGSPKAIHIKSGESPMAYLNKGQFYPVT-LRTPAGGKGLALS 182
E P D + F+Y L + + +K + + YLN+GQ Y + L G+ ++
Sbjct: 53 ESSLPPDNENKILPFQYVLCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKLGELPEIN 112
Query: 183 SNKVKSVVMVVFDNEKVPVEQLRFWKHWHSRQPTAKQRVIDVADCKENFNTVE-HIEEVA 241
VKS+ VVF + ++ + + + W +P R++D+ D + ++
Sbjct: 113 GKLVKSIFRVVFHDRRLQYTEHQQLEGWRWNRPG--DRILDI-DIPMSVGIIDPRANPTQ 169
Query: 242 YNALSFVWNVNEEAKVFIGVNCLSTDFSSQK--GVKGVPLNLQIDTY---DCGLGTERLV 296
N + F+W+ + VFI V+C+ST+F+ +K G KGVP +QIDT+ + G TE L
Sbjct: 170 LNTVEFLWDPAKRTSVFIQVHCISTEFTMRKHGGEKGVPFRVQIDTFKENENGEYTEHL- 228
Query: 297 HRAVCQIKIFCDKGAERKMRDDERKQFRR 325
H A CQIK+F KGA+RK + D K +R
Sbjct: 229 HSASCQIKVFKPKGADRKQKTDREKMEKR 257
>gi|189491634 upstream binding protein 1 (LBP-1a) isoform a [Homo
sapiens]
Length = 540
Score = 96.3 bits (238), Expect = 6e-20
Identities = 75/290 (25%), Positives = 133/290 (45%), Gaps = 20/290 (6%)
Query: 128 PEDYPSLKSDFEYTLGSPKAIHIKSGESPMAYLNKGQFYPVT-LRTPAGGKGLALSSNKV 186
P D + F+Y + + + +K + + YLN+GQ Y + L G ++ V
Sbjct: 54 PLDGETEHPPFQYVMCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKMGDMPEINGKLV 113
Query: 187 KSVVMVVFDNEKVPVEQLRFWKHWHSRQPTAKQRVIDVADCKENFNTVEHIEEVAYNALS 246
KS++ VVF + ++ + + + W +P + +D+ +T + ++ NA+
Sbjct: 114 KSIIRVVFHDRRLQYTEHQQLEGWKWNRPGDRLLDLDIPMSVGIIDTRTNPSQL--NAVE 171
Query: 247 FVWNVNEEAKVFIGVNCLSTDFSSQK--GVKGVPLNLQIDTY---DCGLGTERLVHRAVC 301
F+W+ + FI V+C+ST+F+ +K G KGVP +Q+DT+ + G T+ L H A C
Sbjct: 172 FLWDPAKRTSAFIQVHCISTEFTPRKHGGEKGVPFRIQVDTFKQNENGEYTDHL-HSASC 230
Query: 302 QIKIFCDKGAERKMRDDERKQFRRKVKCPDSSNSGVKGCLLSGFRGNETTYLRPETDLET 361
QIK+F KGA+RK + D K +R + +L+ R E + +
Sbjct: 231 QIKVFKPKGADRKQKTDREKMEKRTAHEKEKYQPSYDTTILTEMRLEPIIEDAVEHEQKK 290
Query: 362 PPVLFIPNVHFSSLQRSGGAAP-----------SAGPSSSNRLPLKRTCS 400
+P + SL + G +P S P+ + P + TCS
Sbjct: 291 SSKRTLPADYGDSLAKRGSCSPWPDAPTAYVNNSPSPAPTFTSPQQSTCS 340
>gi|189491630 upstream binding protein 1 (LBP-1a) isoform a [Homo
sapiens]
Length = 540
Score = 96.3 bits (238), Expect = 6e-20
Identities = 75/290 (25%), Positives = 133/290 (45%), Gaps = 20/290 (6%)
Query: 128 PEDYPSLKSDFEYTLGSPKAIHIKSGESPMAYLNKGQFYPVT-LRTPAGGKGLALSSNKV 186
P D + F+Y + + + +K + + YLN+GQ Y + L G ++ V
Sbjct: 54 PLDGETEHPPFQYVMCAATSPAVKLHDETLTYLNQGQSYEIRMLDNRKMGDMPEINGKLV 113
Query: 187 KSVVMVVFDNEKVPVEQLRFWKHWHSRQPTAKQRVIDVADCKENFNTVEHIEEVAYNALS 246
KS++ VVF + ++ + + + W +P + +D+ +T + ++ NA+
Sbjct: 114 KSIIRVVFHDRRLQYTEHQQLEGWKWNRPGDRLLDLDIPMSVGIIDTRTNPSQL--NAVE 171
Query: 247 FVWNVNEEAKVFIGVNCLSTDFSSQK--GVKGVPLNLQIDTY---DCGLGTERLVHRAVC 301
F+W+ + FI V+C+ST+F+ +K G KGVP +Q+DT+ + G T+ L H A C
Sbjct: 172 FLWDPAKRTSAFIQVHCISTEFTPRKHGGEKGVPFRIQVDTFKQNENGEYTDHL-HSASC 230
Query: 302 QIKIFCDKGAERKMRDDERKQFRRKVKCPDSSNSGVKGCLLSGFRGNETTYLRPETDLET 361
QIK+F KGA+RK + D K +R + +L+ R E + +
Sbjct: 231 QIKVFKPKGADRKQKTDREKMEKRTAHEKEKYQPSYDTTILTEMRLEPIIEDAVEHEQKK 290
Query: 362 PPVLFIPNVHFSSLQRSGGAAP-----------SAGPSSSNRLPLKRTCS 400
+P + SL + G +P S P+ + P + TCS
Sbjct: 291 SSKRTLPADYGDSLAKRGSCSPWPDAPTAYVNNSPSPAPTFTSPQQSTCS 340
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 38.1 bits (87), Expect = 0.019
Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 24/121 (19%)
Query: 20 LTENVSGTPEYPDLLKKN-NLMSLEGALPTPGKAAPLPAGPSKLEAGSV------DSYLL 72
L + SG E P L ++N +L S LP+PG++ PLP PS+ V L
Sbjct: 321 LPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPPPPSERPPPPVRDPPGRSGPLP 380
Query: 73 PTTDMYDNGSLNSLFESIHGVPPTQRWQPDSTFKDDPQESMLFPDILKTSPEPPCPEDYP 132
P + NGS + +P T + P + D P ++ P PP P D P
Sbjct: 381 PPPPVSRNGSTS------RALPATPQ-LPSRSGVDSP----------RSGPRPPLPPDRP 423
Query: 133 S 133
S
Sbjct: 424 S 424
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 38.1 bits (87), Expect = 0.019
Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 24/121 (19%)
Query: 20 LTENVSGTPEYPDLLKKN-NLMSLEGALPTPGKAAPLPAGPSKLEAGSV------DSYLL 72
L + SG E P L ++N +L S LP+PG++ PLP PS+ V L
Sbjct: 321 LPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPPPPSERPPPPVRDPPGRSGPLP 380
Query: 73 PTTDMYDNGSLNSLFESIHGVPPTQRWQPDSTFKDDPQESMLFPDILKTSPEPPCPEDYP 132
P + NGS + +P T + P + D P ++ P PP P D P
Sbjct: 381 PPPPVSRNGSTS------RALPATPQ-LPSRSGVDSP----------RSGPRPPLPPDRP 423
Query: 133 S 133
S
Sbjct: 424 S 424
>gi|242117953 SH3 domain-containing protein C1orf113 isoform 1 [Homo
sapiens]
Length = 756
Score = 33.1 bits (74), Expect = 0.61
Identities = 37/138 (26%), Positives = 50/138 (36%), Gaps = 17/138 (12%)
Query: 13 PTHLMKFLTENVSGTPEYPDLLKKNNLMSLEGALPTPGKAAPLPAGPSKLEAG---SVDS 69
P + K + V P +K+ + + +LPT K A GPSK + S DS
Sbjct: 240 PPPIKKLVPRKVVSRESAP--IKEPKKLMPKTSLPTVKKLATATTGPSKAKTSRTPSRDS 297
Query: 70 YLLPTTDMYDNGSLNS--LFESIHGVPPTQRWQPDSTFKDDPQESML----------FPD 117
L + D NG S + TQ Q S + + S PD
Sbjct: 298 QKLTSRDSGPNGGFQSGGSYHPGRKRSKTQTPQQRSVSSQEEEHSSPVKAPSVKRTPMPD 357
Query: 118 ILKTSPEPPCPEDYPSLK 135
T PP PE+ PS K
Sbjct: 358 KTATPERPPAPENAPSSK 375
>gi|242117948 SH3 domain-containing protein C1orf113 isoform 2 [Homo
sapiens]
Length = 645
Score = 33.1 bits (74), Expect = 0.61
Identities = 37/138 (26%), Positives = 50/138 (36%), Gaps = 17/138 (12%)
Query: 13 PTHLMKFLTENVSGTPEYPDLLKKNNLMSLEGALPTPGKAAPLPAGPSKLEAG---SVDS 69
P + K + V P +K+ + + +LPT K A GPSK + S DS
Sbjct: 129 PPPIKKLVPRKVVSRESAP--IKEPKKLMPKTSLPTVKKLATATTGPSKAKTSRTPSRDS 186
Query: 70 YLLPTTDMYDNGSLNS--LFESIHGVPPTQRWQPDSTFKDDPQESML----------FPD 117
L + D NG S + TQ Q S + + S PD
Sbjct: 187 QKLTSRDSGPNGGFQSGGSYHPGRKRSKTQTPQQRSVSSQEEEHSSPVKAPSVKRTPMPD 246
Query: 118 ILKTSPEPPCPEDYPSLK 135
T PP PE+ PS K
Sbjct: 247 KTATPERPPAPENAPSSK 264
>gi|7705415 hook homolog 1 [Homo sapiens]
Length = 728
Score = 33.1 bits (74), Expect = 0.61
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 15/136 (11%)
Query: 374 SLQRSGGAAPSAGPSSSN-RLPLKRTCSPFTEEFEPLPSKQAKEGDLQRVLLYVRRETEE 432
SLQ G + S G SSS + L+ TE E L KQ DLQ + ++ E
Sbjct: 530 SLQEQG--SKSEGESSSKLKQKLEAHMEKLTEVHEELQKKQELIEDLQPDINQNVQKINE 587
Query: 433 VFDALMLKTPDLKGLRNAISEKYGFPEENIYKVYKKCKRGILVNMDNNIIQHYSNHVAFL 492
+ AL K D+K + E YK+Y + R ++ +D + + +
Sbjct: 588 LEAALQKKDEDMKAM------------EERYKMYLEKARNVIKTLDPKLNPASAEIMLLR 635
Query: 493 LDMGELDGKIQIILKE 508
+ E + +I+I+ E
Sbjct: 636 KQLAEKERRIEILESE 651
>gi|5454102 transforming, acidic coiled-coil containing protein 3
[Homo sapiens]
Length = 838
Score = 32.7 bits (73), Expect = 0.80
Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 8/92 (8%)
Query: 9 PLESPTHLMKFLTENVSGTPEYPDLLKKNNLMSLEGALPTPGKAAPLPAGPSKLEAGSVD 68
P+ + T M E SG P L++ + L +L+ +P P P P GP VD
Sbjct: 576 PVATETSSMHGANETPSGRPREAKLVEFDFLGALDIPVPGPPPGVPAPGGPPLSTGPIVD 635
Query: 69 SYLLPTTDM--------YDNGSLNSLFESIHG 92
D+ +N L S E +HG
Sbjct: 636 LLQYSQKDLDAVVKATQEENRELRSRCEELHG 667
>gi|7662228 synaptosomal-associated protein, 91kDa homolog [Homo
sapiens]
Length = 907
Score = 32.3 bits (72), Expect = 1.0
Identities = 38/166 (22%), Positives = 59/166 (35%), Gaps = 14/166 (8%)
Query: 21 TENVSGTPEYPDLLKKNNLMSLEGALPTPGKAAPLPAGPSKLEAGSVDSYLLP------T 74
T V+ P+ PD +L S + P A+P+P + SVD++ P +
Sbjct: 571 TPEVAAAPK-PDAAPSIDLFSTDAFSSPPQGASPVPESSLTADLLSVDAFAAPSPATTAS 629
Query: 75 TDMYDNGSLNSLFESIHGVPPTQRWQPDSTFKDDPQESM-----LFPDILKTSPEPPCPE 129
D+ + LF G ++ QP S S + SP P P
Sbjct: 630 PAKVDSSGVIDLFGDAFGSSASEP-QPASQAASSSSASADLLAGFGGSFMAPSPSPVTPA 688
Query: 130 DYPSLKSDFEYTLGSPKAIHIKSGESPMAYLNKGQFYPVTLRTPAG 175
L+ +FE G+ + S P + G T+ PAG
Sbjct: 689 QNNLLQPNFEAAFGTTPSTSSSSSFDPSVFDGLGDLLMPTM-APAG 733
>gi|35493801 ring finger protein 19 [Homo sapiens]
Length = 838
Score = 32.3 bits (72), Expect = 1.0
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 331 DSSNSGVKGCLLSGF--RGNETTYLRPETDLETPPVLFIPNVHFSSLQRSGGAAPSAGPS 388
++S + G +L+ + E + + D+E+ P F N SS+ AG S
Sbjct: 590 NASTKAMAGSILNSYIPLDKEGNSMEVQVDIESKPSKFRHNSGSSSVDDGSATRSHAGGS 649
Query: 389 SSNRLPLKRTCSPFTEEFEPLPSKQAKEGDLQRVLLYVRRETEEVFDALMLK 440
SS K + + +++ E K++K G L++ ET E DA +L+
Sbjct: 650 SSGLPEGKSSATKWSK--EATAGKKSKSGKLRKKGNMKINETREDMDAQLLE 699
>gi|35493782 ring finger protein 19 [Homo sapiens]
Length = 838
Score = 32.3 bits (72), Expect = 1.0
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 331 DSSNSGVKGCLLSGF--RGNETTYLRPETDLETPPVLFIPNVHFSSLQRSGGAAPSAGPS 388
++S + G +L+ + E + + D+E+ P F N SS+ AG S
Sbjct: 590 NASTKAMAGSILNSYIPLDKEGNSMEVQVDIESKPSKFRHNSGSSSVDDGSATRSHAGGS 649
Query: 389 SSNRLPLKRTCSPFTEEFEPLPSKQAKEGDLQRVLLYVRRETEEVFDALMLK 440
SS K + + +++ E K++K G L++ ET E DA +L+
Sbjct: 650 SSGLPEGKSSATKWSK--EATAGKKSKSGKLRKKGNMKINETREDMDAQLLE 699
>gi|50980301 myosin phosphatase-Rho interacting protein isoform 2
[Homo sapiens]
Length = 1025
Score = 32.3 bits (72), Expect = 1.0
Identities = 37/126 (29%), Positives = 49/126 (38%), Gaps = 23/126 (18%)
Query: 22 ENVSGTPE----YPDLLKKNNLMSLEGALPTPGKAAPLPAGPSKLEAGSVDSYLLPTTDM 77
E VSG E YP K+N + PTP + GP+K+ S S
Sbjct: 136 EIVSGWLEMLMVYPRTNKQNQKKKRKVEPPTPQEP-----GPAKVAVTSSSS-------- 182
Query: 78 YDNGSLNSLFESIHGVPPTQR--WQPDSTFKDDPQESMLFPDILKTSPEPPCPEDY--PS 133
+ S +S S VP T+ WQ + KD P S L P + +PP P
Sbjct: 183 --SSSSSSSIPSAEKVPTTKSTLWQEEMRTKDQPDGSSLSPAQSPSQSQPPAASSLREPG 240
Query: 134 LKSDFE 139
L+S E
Sbjct: 241 LESKEE 246
>gi|50980307 myosin phosphatase-Rho interacting protein isoform 1
[Homo sapiens]
Length = 1038
Score = 32.3 bits (72), Expect = 1.0
Identities = 37/126 (29%), Positives = 49/126 (38%), Gaps = 23/126 (18%)
Query: 22 ENVSGTPE----YPDLLKKNNLMSLEGALPTPGKAAPLPAGPSKLEAGSVDSYLLPTTDM 77
E VSG E YP K+N + PTP + GP+K+ S S
Sbjct: 136 EIVSGWLEMLMVYPRTNKQNQKKKRKVEPPTPQEP-----GPAKVAVTSSSS-------- 182
Query: 78 YDNGSLNSLFESIHGVPPTQR--WQPDSTFKDDPQESMLFPDILKTSPEPPCPEDY--PS 133
+ S +S S VP T+ WQ + KD P S L P + +PP P
Sbjct: 183 --SSSSSSSIPSAEKVPTTKSTLWQEEMRTKDQPDGSSLSPAQSPSQSQPPAASSLREPG 240
Query: 134 LKSDFE 139
L+S E
Sbjct: 241 LESKEE 246
>gi|45439359 triple functional domain (PTPRF interacting) [Homo
sapiens]
Length = 3097
Score = 30.8 bits (68), Expect = 3.0
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 380 GAAPSAGPSSSNRLPLKRTCSPFTEEFEPLPSKQAKE 416
GAAP AGPS+ +R P E EP+P + E
Sbjct: 2380 GAAPEAGPSAPSRRPPGADAEGSEREAEPIPKMKVLE 2416
>gi|40807477 retinoic acid induced 1 [Homo sapiens]
Length = 1906
Score = 30.8 bits (68), Expect = 3.0
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 372 FSSLQRSGGAAPSAGPSSSN--RLPLKRTCSPFTEEFEPLPSKQAKEGDLQRVLLYVRRE 429
F S +R G +P A S SN LP+ SP + + S D + ++L R +
Sbjct: 1092 FKSGKRVGKPSPKAASSPSNPAALPVASDSSPMGSKTKETDSPSTPGKDQRSMILRSRTK 1151
Query: 430 TEEVF 434
T+E+F
Sbjct: 1152 TQEIF 1156
>gi|112821681 G protein-regulated inducer of neurite outgrowth 1
[Homo sapiens]
Length = 1008
Score = 30.8 bits (68), Expect = 3.0
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 15/73 (20%)
Query: 40 MSLEGALPTPGKAAPLPAGPSKLEAGSVDSYLLPTTDMYDNGSLNSLFESIHGVPPTQRW 99
+S+ + TPGK P+P +G VD L + G + SL P ++
Sbjct: 570 VSIGKVVSTPGKTVPVP-------SGKVDPVSLGKAEAIPEGKVGSL--------PLEKG 614
Query: 100 QPDSTFKDDPQES 112
P +T K DP+ S
Sbjct: 615 SPVTTTKADPRAS 627
>gi|225735595 RNA polymerase II associated protein 3 isoform 3 [Homo
sapiens]
Length = 506
Score = 30.0 bits (66), Expect = 5.2
Identities = 39/163 (23%), Positives = 61/163 (37%), Gaps = 36/163 (22%)
Query: 9 PLESPTH------LMKFLTE---NVSGTPEYPD----LLKKNNLMSLEGALPTPGKAAPL 55
P+++P H L K + E N+ T + PD +NN ++L + G +
Sbjct: 260 PIDNPPHPGSTKPLKKVIIEETGNLIQTIDVPDSTTAAAPENNPINLANVIAATGTTS-- 317
Query: 56 PAGPSKLEAGSVDSYLLPTTDMYDNGSLNSLFESIHGVPPTQRWQPDSTFKDD------- 108
+ S L PT+D + + I V T QP ++ K D
Sbjct: 318 -------KKNSSQDDLFPTSD-----TPRAKVLKIEEVSDTSSLQPQASLKQDVCQSYSE 365
Query: 109 --PQESMLFPDILKTSPEPPCPEDYPSLKSDFEYTLGSPKAIH 149
P E P T+ PP P + L+SDF SP ++
Sbjct: 366 KMPIEIEQKPAQFATTVLPPIPANSFQLESDFRQLKSSPDMLY 408
>gi|225735591 RNA polymerase II associated protein 3 isoform 1 [Homo
sapiens]
Length = 665
Score = 30.0 bits (66), Expect = 5.2
Identities = 39/163 (23%), Positives = 61/163 (37%), Gaps = 36/163 (22%)
Query: 9 PLESPTH------LMKFLTE---NVSGTPEYPD----LLKKNNLMSLEGALPTPGKAAPL 55
P+++P H L K + E N+ T + PD +NN ++L + G +
Sbjct: 419 PIDNPPHPGSTKPLKKVIIEETGNLIQTIDVPDSTTAAAPENNPINLANVIAATGTTS-- 476
Query: 56 PAGPSKLEAGSVDSYLLPTTDMYDNGSLNSLFESIHGVPPTQRWQPDSTFKDD------- 108
+ S L PT+D + + I V T QP ++ K D
Sbjct: 477 -------KKNSSQDDLFPTSD-----TPRAKVLKIEEVSDTSSLQPQASLKQDVCQSYSE 524
Query: 109 --PQESMLFPDILKTSPEPPCPEDYPSLKSDFEYTLGSPKAIH 149
P E P T+ PP P + L+SDF SP ++
Sbjct: 525 KMPIEIEQKPAQFATTVLPPIPANSFQLESDFRQLKSSPDMLY 567
>gi|239757437 PREDICTED: hypothetical protein [Homo sapiens]
Length = 503
Score = 29.6 bits (65), Expect = 6.8
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 320 RKQFRRKVKCPDSSNSGVKGCLLSGFRGNETTYLRPET----DLETPPVLFIPNVHFSSL 375
R Q + K + P+ S G + LS +G P+T ++ P+ +P + +
Sbjct: 269 RGQGKSKRRAPEESRKGTE--CLSTDKGTRRKGCSPDTVGQSTIQALPLRPLPGMEKAGR 326
Query: 376 QRSGGAAPSAGPSSS 390
Q G + P+AGPS S
Sbjct: 327 QGEGKSKPAAGPSIS 341
>gi|239751954 PREDICTED: hypothetical protein [Homo sapiens]
Length = 503
Score = 29.6 bits (65), Expect = 6.8
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 320 RKQFRRKVKCPDSSNSGVKGCLLSGFRGNETTYLRPET----DLETPPVLFIPNVHFSSL 375
R Q + K + P+ S G + LS +G P+T ++ P+ +P + +
Sbjct: 269 RGQGKSKRRAPEESRKGTE--CLSTDKGTRRKGCSPDTVGQSTIQALPLRPLPGMEKAGR 326
Query: 376 QRSGGAAPSAGPSSS 390
Q G + P+AGPS S
Sbjct: 327 QGEGKSKPAAGPSIS 341
>gi|239746437 PREDICTED: hypothetical protein XP_002344221 [Homo
sapiens]
Length = 503
Score = 29.6 bits (65), Expect = 6.8
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 320 RKQFRRKVKCPDSSNSGVKGCLLSGFRGNETTYLRPET----DLETPPVLFIPNVHFSSL 375
R Q + K + P+ S G + LS +G P+T ++ P+ +P + +
Sbjct: 269 RGQGKSKRRAPEESRKGTE--CLSTDKGTRKKGCSPDTVGQSTIQALPLRPLPGMEKAGR 326
Query: 376 QRSGGAAPSAGPSSS 390
Q G + P+AGPS S
Sbjct: 327 QGEGKSKPAAGPSIS 341
>gi|26667243 eyes absent 3 [Homo sapiens]
Length = 573
Score = 29.6 bits (65), Expect = 6.8
Identities = 35/135 (25%), Positives = 52/135 (38%), Gaps = 22/135 (16%)
Query: 329 CPDSSNSGVKGCLLSGFRGNETTYLRPETDLETPPVLFIPNVHFSSLQRSGGAAPSAGPS 388
C SS+ GV G S E+T L T P + P + QR PS PS
Sbjct: 211 CYPSSSFGVTGQTNSDA---ESTTLAATTYQSEKPSVMAPA---PAAQRLSSGDPSTSPS 264
Query: 389 SSNRLPLKRTCSPFTEEF-------EPLPSKQAKEGDLQRVLLYVRRETEEVFDALMLKT 441
S P K T + + +++ +L+RV L+ ET +F +L
Sbjct: 265 LSQTTPSKDTDDQSRKNMTSKNRGKRKADATSSQDSELERVFLWDLDETIIIFHSL---- 320
Query: 442 PDLKGLRNAISEKYG 456
L + ++KYG
Sbjct: 321 -----LTGSYAQKYG 330
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,150,963
Number of Sequences: 37866
Number of extensions: 1156266
Number of successful extensions: 3565
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 3510
Number of HSP's gapped (non-prelim): 46
length of query: 509
length of database: 18,247,518
effective HSP length: 107
effective length of query: 402
effective length of database: 14,195,856
effective search space: 5706734112
effective search space used: 5706734112
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.