Guide to the Human Genome
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Name: LOC401321 Sequence: fasta or formatted (151aa) NCBI GI: 42657886
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {151aa} PREDICTED: hypothetical protein
alt mRNA {151aa} PREDICTED: hypothetical protein
alt mRNA {151aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         15           2
 C cysteine            3.3          5           1
 D aspartate           0.0          0           0
 E glutamate           1.3          2           1
 F phenylalanine       3.3          5           1
 G glycine             4.0          6           1
 H histidine           7.3         11           2
 I isoleucine          0.0          0           0
 K lysine              2.0          3           1
 L leucine             6.6         10           1
 M methionine          1.3          2           1
 N asparagine          0.0          0           0
 P proline            21.2         32           4
 Q glutamine           7.3         11           1
 R arginine            9.3         14           2
 S serine             10.6         16           2
 T threonine           6.6         10           1
 V valine              5.3          8           2
 W tryptophan          0.7          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC401321             1.000   PREDICTED: hypothetical protein 
LOC401321             1.000   PREDICTED: hypothetical protein 
LOC401321             1.000   PREDICTED: hypothetical protein 
FLJ22184              0.083   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.076   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.076   PREDICTED: hypothetical protein LOC80164 
WIPF1                 0.076   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.076   WAS/WASL interacting protein family, member 1 
AUTS2                 0.066   autism susceptibility candidate 2 isoform 2 
AUTS2                 0.066   autism susceptibility candidate 2 isoform 1 
ARID1A                0.063   AT rich interactive domain 1A isoform a 
ARID1A                0.063   AT rich interactive domain 1A isoform b 
SOS2                  0.059   son of sevenless homolog 2 
MUC7                  0.059   mucin 7, secreted precursor 
MUC7                  0.059   mucin 7, secreted precursor 
MUC7                  0.059   mucin 7, secreted precursor 
MLL4                  0.056   myeloid/lymphoid or mixed-lineage leukemia 4 
SRRM1                 0.056   serine/arginine repetitive matrix 1 
LOC100128074          0.056   PREDICTED: hypothetical protein 
RERE                  0.053   atrophin-1 like protein isoform b 
RERE                  0.053   atrophin-1 like protein isoform a 
RERE                  0.053   atrophin-1 like protein isoform a 
SRRM2                 0.050   splicing coactivator subunit SRm300 
MEF2B                 0.050   myocyte enhancer factor 2B isoform a 
RANBP9                0.050   RAN binding protein 9 
WASF2                 0.050   WAS protein family, member 2 
RLTPR                 0.050   RGD motif, leucine rich repeats, tropomodulin domain...
MYO15A                0.046   myosin XV 
C17orf63              0.046   hypothetical protein LOC55731 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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