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Search of human proteins with 42558264
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|42558264 early estrogen-induced gene 1 protein isoform b
[Homo sapiens]
(242 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|78191787 early estrogen-induced gene 1 protein isoform a [Hom... 484 e-137
gi|42558264 early estrogen-induced gene 1 protein isoform b [Hom... 484 e-137
gi|162809336 hypothetical protein LOC284611 [Homo sapiens] 175 3e-44
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 49 4e-06
gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 44 1e-04
gi|239754668 PREDICTED: mucin 12 [Homo sapiens] 43 2e-04
gi|89026265 PREDICTED: mucin 12 [Homo sapiens] 42 5e-04
gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo ... 42 5e-04
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens] 41 0.001
gi|61743946 abl-interactor 1 isoform c [Homo sapiens] 40 0.002
gi|22325364 ubiquitin associated protein 2 [Homo sapiens] 39 0.004
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot... 39 0.005
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot... 39 0.005
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot... 39 0.005
gi|169166499 PREDICTED: similar to ribonucleic acid binding prot... 39 0.005
gi|113415498 PREDICTED: similar to ribonucleic acid binding prot... 39 0.005
gi|88973230 PREDICTED: similar to ribonucleic acid binding prote... 39 0.005
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi... 39 0.005
gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap... 39 0.005
gi|161016767 mucin 21 [Homo sapiens] 38 0.009
gi|28559039 mediator complex subunit 1 [Homo sapiens] 37 0.015
gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithor... 37 0.015
gi|196115147 CDKN1A interacting zinc finger protein 1 isoform 1 ... 37 0.015
gi|196115141 CDKN1A interacting zinc finger protein 1 isoform 2 ... 37 0.015
gi|42544179 CDKN1A interacting zinc finger protein 1 isoform 1 [... 37 0.015
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] 37 0.020
gi|189011568 adenomatous polyposis coli [Homo sapiens] 36 0.026
gi|189011566 adenomatous polyposis coli [Homo sapiens] 36 0.026
gi|53759122 adenomatous polyposis coli [Homo sapiens] 36 0.026
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 36 0.034
>gi|78191787 early estrogen-induced gene 1 protein isoform a [Homo
sapiens]
Length = 384
Score = 484 bits (1247), Expect = e-137
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 1 MFLLSGDPCFKTPPSTAKSISIPGQDSSLQLTCKGGGTSSGGSSTNSLTGSRPPKARPTI 60
MFLLSGDPCFKTPPSTAKSISIPGQDSSLQLTCKGGGTSSGGSSTNSLTGSRPPKARPTI
Sbjct: 143 MFLLSGDPCFKTPPSTAKSISIPGQDSSLQLTCKGGGTSSGGSSTNSLTGSRPPKARPTI 202
Query: 61 LSSGLPEEPDQNLSSPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTS 120
LSSGLPEEPDQNLSSPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTS
Sbjct: 203 LSSGLPEEPDQNLSSPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTS 262
Query: 121 TSSSASGGLGMTVEGPEGSEREHRPPEKPPRPPRPLHLSDRSFRRKKDSVESHPTWVDDT 180
TSSSASGGLGMTVEGPEGSEREHRPPEKPPRPPRPLHLSDRSFRRKKDSVESHPTWVDDT
Sbjct: 263 TSSSASGGLGMTVEGPEGSEREHRPPEKPPRPPRPLHLSDRSFRRKKDSVESHPTWVDDT 322
Query: 181 RIDADAIVEKIVQSQDFTDGSNTEDSNLRLFVSRDGSATLSGIQLATRVSSGVYEPVVIE 240
RIDADAIVEKIVQSQDFTDGSNTEDSNLRLFVSRDGSATLSGIQLATRVSSGVYEPVVIE
Sbjct: 323 RIDADAIVEKIVQSQDFTDGSNTEDSNLRLFVSRDGSATLSGIQLATRVSSGVYEPVVIE 382
Query: 241 SH 242
SH
Sbjct: 383 SH 384
>gi|42558264 early estrogen-induced gene 1 protein isoform b [Homo
sapiens]
Length = 242
Score = 484 bits (1247), Expect = e-137
Identities = 242/242 (100%), Positives = 242/242 (100%)
Query: 1 MFLLSGDPCFKTPPSTAKSISIPGQDSSLQLTCKGGGTSSGGSSTNSLTGSRPPKARPTI 60
MFLLSGDPCFKTPPSTAKSISIPGQDSSLQLTCKGGGTSSGGSSTNSLTGSRPPKARPTI
Sbjct: 1 MFLLSGDPCFKTPPSTAKSISIPGQDSSLQLTCKGGGTSSGGSSTNSLTGSRPPKARPTI 60
Query: 61 LSSGLPEEPDQNLSSPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTS 120
LSSGLPEEPDQNLSSPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTS
Sbjct: 61 LSSGLPEEPDQNLSSPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTS 120
Query: 121 TSSSASGGLGMTVEGPEGSEREHRPPEKPPRPPRPLHLSDRSFRRKKDSVESHPTWVDDT 180
TSSSASGGLGMTVEGPEGSEREHRPPEKPPRPPRPLHLSDRSFRRKKDSVESHPTWVDDT
Sbjct: 121 TSSSASGGLGMTVEGPEGSEREHRPPEKPPRPPRPLHLSDRSFRRKKDSVESHPTWVDDT 180
Query: 181 RIDADAIVEKIVQSQDFTDGSNTEDSNLRLFVSRDGSATLSGIQLATRVSSGVYEPVVIE 240
RIDADAIVEKIVQSQDFTDGSNTEDSNLRLFVSRDGSATLSGIQLATRVSSGVYEPVVIE
Sbjct: 181 RIDADAIVEKIVQSQDFTDGSNTEDSNLRLFVSRDGSATLSGIQLATRVSSGVYEPVVIE 240
Query: 241 SH 242
SH
Sbjct: 241 SH 242
>gi|162809336 hypothetical protein LOC284611 [Homo sapiens]
Length = 360
Score = 175 bits (444), Expect = 3e-44
Identities = 113/251 (45%), Positives = 141/251 (56%), Gaps = 42/251 (16%)
Query: 1 MFLLSGDPCFKTPPSTAKSISIPGQDSSLQLTCKGGGTSSGGSSTNSLTGSRPPKARPTI 60
M L+SGDPCFKTPPST+ SI I G+ SLQ KGG T
Sbjct: 140 MQLMSGDPCFKTPPSTSMSIPIAGESESLQEDRKGGETLK-------------------- 179
Query: 61 LSSGLPEEPDQNLSSPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTS 120
+ G+ + ++ S P+E+ GHSR SSYASQQSK+SGYST HSRSSS S+L HRRNTS
Sbjct: 180 VHLGIADLSAKSASVPDELGACGHSRTSSYASQQSKVSGYSTCHSRSSSFSELCHRRNTS 239
Query: 121 TSSSASG---------GLGMTVEGP--EGSEREHRPPEKPPRPPRPLHLSDRSFRRKKDS 169
S+++G + + P + +++E EK R P K+DS
Sbjct: 240 VGSTSTGVESILEPCDEIEQKIAEPNLDTADKEDTASEKLSRCPV-----------KQDS 288
Query: 170 VESHPTWVDDTRIDADAIVEKIVQSQDFTDGSNTEDSNLRLFVSRDGSATLSGIQLATRV 229
VES VDDTR+DAD IVEKI+QSQDF+ S+ E+ LRLFV GS T L RV
Sbjct: 289 VESQLKRVDDTRVDADDIVEKILQSQDFSLDSSAEEEGLRLFVGPGGSTTFGSHHLPNRV 348
Query: 230 SSGVYEPVVIE 240
SG YE VVI+
Sbjct: 349 GSGAYEQVVIK 359
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 48.9 bits (115), Expect = 4e-06
Identities = 46/159 (28%), Positives = 67/159 (42%), Gaps = 10/159 (6%)
Query: 17 AKSISIPGQDSSLQLTCKGGGTSSGGSSTNSLTGSRPPKARPTILS-----SGLPEEPDQ 71
+ S S SS + +SS GSS++ GS P L + P+E +
Sbjct: 2532 SSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPKEAVR 2591
Query: 72 NLSSPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTSSSASGGLGM 131
PE R+SS +S S S S+ S SSS S + ++S+SSS+S
Sbjct: 2592 EGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSP 2651
Query: 132 TVEGPEGSEREHRPPEKPPRPPRPLHLSDRSFRRKKDSV 170
GP+ + P P +PP P RS R+ DS+
Sbjct: 2652 AKPGPQALPK----PASPKKPP-PGERRSRSPRKPIDSL 2685
Score = 39.7 bits (91), Expect = 0.002
Identities = 41/143 (28%), Positives = 56/143 (39%), Gaps = 13/143 (9%)
Query: 34 KGGGTSSGGSSTNSLTGSRPPKARPTILSSGLPEEPDQNLSSPEEVFHSGHSRNSSYASQ 93
KG G S GSS+ + PPK+R S EP +P SR+S ++
Sbjct: 1643 KGRGPSPEGSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTPP---RRRSSRSSPELTR 1699
Query: 94 QSKISGYSTEHSRSSSLSDLT---HRRNTSTSS------SASGGLGMTVEGPEGSEREHR 144
++++S S S S T HRR+ S SS S S + P R
Sbjct: 1700 KARLSRRSRSASSSPETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRR 1759
Query: 145 PPEKPPRPPRPLHLSDRSFRRKK 167
P+ PR L S RR+K
Sbjct: 1760 GRSPSPK-PRGLQRSRSRSRREK 1781
Score = 31.6 bits (70), Expect = 0.65
Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 21/110 (19%)
Query: 60 ILSSGLPEEPDQNLSSPEEVFHSGHSRNSSYASQQ------SKISGYSTEHSRSSSLSDL 113
+LS P P ++ P +G + S+ A+ Q S S S+ S SSS S
Sbjct: 2493 MLSVPAPGVPHSDVGEPPA--STGAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSS 2550
Query: 114 THRRNTSTSSSASGGLGMTVE-------------GPEGSEREHRPPEKPP 150
+ ++ +SSS S G + V+ P+ + RE RPPE P
Sbjct: 2551 SSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPKEAVREGRPPEPTP 2600
Score = 31.6 bits (70), Expect = 0.65
Identities = 37/150 (24%), Positives = 56/150 (37%), Gaps = 17/150 (11%)
Query: 15 STAKSISIPGQDSSLQLTCKGGGTSSGGSSTNSLTGSRPPKARPTILSSGLPEEPDQNLS 74
S++ S S SS + +SS SS++ P+A P S P ++
Sbjct: 2617 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERRSR 2676
Query: 75 SPEEVFHS-GHSRNSSYAS-QQSKISGYSTEHSRSSSLSDLTHRRNTSTSSSASGGLGMT 132
SP + S SR+ SY+ ++ + S + + SS S+ RR S
Sbjct: 2677 SPRKPIDSLRDSRSLSYSPVERRRPSPQPSPRDQQSSSSERGSRRGQRGDS--------- 2727
Query: 133 VEGPEGSEREHRPPEKPPRPPRPLHLSDRS 162
P R P +P R H S RS
Sbjct: 2728 -RSPSHKRRRETPSPRPMR-----HRSSRS 2751
Score = 31.2 bits (69), Expect = 0.85
Identities = 45/148 (30%), Positives = 60/148 (40%), Gaps = 19/148 (12%)
Query: 39 SSGGSSTNSLTGSRPPKARPTILSSGLPEEPDQNLSSPEEVFHSGHSRNSSYASQQSKIS 98
S GSS + S PP+ P+ SS P+ + + SP + HSG SS S S
Sbjct: 890 SCSGSSPPRVKSSTPPRQSPSRSSS--PQPKVKAIISPRQRSHSG----SSSPSPSRVTS 943
Query: 99 GYSTEHSRS-SSLSDLTHRRNTSTSSSASGGLGMTVEGPEGSEREHR-------PPEKPP 150
+ SRS S S++ R S S S V+ PE R+ P K
Sbjct: 944 RTTPRRSRSVSPCSNVESRLLPRYSHSGSSSPDTKVK-PETPPRQSHSGSISPYPKVKAQ 1002
Query: 151 RPPRPLHLSDRS---FRRKKDS-VESHP 174
PP P +S + KDS V+S P
Sbjct: 1003 TPPGPSLSGSKSPCPQEKSKDSLVQSCP 1030
Score = 28.9 bits (63), Expect = 4.2
Identities = 30/137 (21%), Positives = 50/137 (36%), Gaps = 15/137 (10%)
Query: 46 NSLTGSRPPKARPTILSSGLPEEPDQNLSSP-----EEVFHSGHSRNSSYA-SQQSKISG 99
+S + S PP +PT +S P+ +P E+ S S+N S+ +++ K
Sbjct: 415 SSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTSKNRSHGRAKRDKSHS 474
Query: 100 YSTEHSRSSSLSDLTHRRNTSTSSSASGGLGMTVEGPEGSEREHRPPEKPPRPPRPLHLS 159
++ S S T +R S S + + G R P + R + S
Sbjct: 475 HTPSRRMGRSRSPATAKRGRSRSRTPT---------KRGHSRSRSPQWRRSRSAQRWGRS 525
Query: 160 DRSFRRKKDSVESHPTW 176
RR + P W
Sbjct: 526 RSPQRRGRSRSPQRPGW 542
Score = 27.7 bits (60), Expect = 9.4
Identities = 42/195 (21%), Positives = 64/195 (32%), Gaps = 34/195 (17%)
Query: 12 TPPSTAKSISIPGQDSSLQLTCKGGGTSSGGSSTNSLTGSRPPKARPTILS--------- 62
+P + K S P +D K T S S TG PP P +
Sbjct: 323 SPETATKQPSSPYEDKDKDKKEKSA-TRPSPSPERSSTGPEPPAPTPLLAERHGGSPQPL 381
Query: 63 -----SGLPEEPDQNLS---------SPEEVFHSGHSRNSSYASQQSKISGY--STEHSR 106
S P P S SPE++ S S +S + Q +K+S + S+ S
Sbjct: 382 ATTPLSQEPVNPPSEASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESP 441
Query: 107 SSSLSDLTHRRNTSTSSSASGGLGMTVEGPEGSEREHRPPEKPPRPPRPLHLSDRSFRRK 166
+ + +HR +S+ +S + G H P + R P R +
Sbjct: 442 KPAPAPGSHREISSSPTSKNRSHG---RAKRDKSHSHTPSRRMGRSRSPATAKRGRSRSR 498
Query: 167 KDSVESH-----PTW 176
+ H P W
Sbjct: 499 TPTKRGHSRSRSPQW 513
>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
Length = 5478
Score = 43.9 bits (102), Expect = 1e-04
Identities = 45/144 (31%), Positives = 58/144 (40%), Gaps = 8/144 (5%)
Query: 12 TPPSTAKSISIPGQDSSLQLTCKGGGTSSGGSSTNSLTGSRPPKARPTILS------SGL 65
TP + KS + SS T +++ G S S T P A T S SGL
Sbjct: 4682 TPGLSEKSTTFHSSPSSTPTTHFSASSTTLGRSEESTTVHSSPVATATTPSPARSTTSGL 4741
Query: 66 PEEPDQNLSSP--EEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTSS 123
EE SSP + H S +S S++S+ S ST H+ SS S + TS
Sbjct: 4742 VEESTAYHSSPGSTQTMHFPESSTASGRSEESRTSHSSTTHTISSPPSTTSALVEEPTSY 4801
Query: 124 SASGGLGMTVEGPEGSEREHRPPE 147
+S G T PE S R E
Sbjct: 4802 HSSPGSIATTHFPESSTTSGRSEE 4825
Score = 33.9 bits (76), Expect = 0.13
Identities = 52/213 (24%), Positives = 65/213 (30%), Gaps = 7/213 (3%)
Query: 12 TPPSTAKSISIPGQDSSLQLTCKGGGTSSGGSSTNSLTGSRPPKARPTILSSGLPEEPDQ 71
TP + S + S T T++ GSS S T + T LS G
Sbjct: 3655 TPGLSRHSTTSHSSPGSTDTTLLPASTTTSGSSQESTTSHSSSGSTDTALSPG--STTAL 3712
Query: 72 NLSSPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTSSSASGGL-G 130
+ FHS + S S E S S + R S +SS S GL G
Sbjct: 3713 SFGQESTTFHSSPGSTHTTLFPDSTTSSGIVEASTRVHSSTGSPRTTLSPASSTSPGLQG 3772
Query: 131 MTVEGPEGSEREHRPPEKPPRPPRPLHLSDRSFRRKKDSVESHPTWVDDTRIDADAIVEK 190
+ H P P P+ S R S S PT EK
Sbjct: 3773 ESTAFQTHPASTHTTPSPPSTATAPVEESTTYHR----SPGSTPTTHFPASSTTSGHSEK 3828
Query: 191 IVQSQDFTDGSNTEDSNLRLFVSRDGSATLSGI 223
D S T S+ S G +T S I
Sbjct: 3829 STIFHSSPDASGTTPSSAHSTTSGRGESTTSRI 3861
Score = 31.2 bits (69), Expect = 0.85
Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 16/137 (11%)
Query: 3 LLSGDPCFKTPPSTAKSISIPGQDSSLQLTCKGGGTSSGGSSTNSLTGSRPPKARPTILS 62
L+ + + P + +++ P D++ + +G +++ SST S P +
Sbjct: 825 LVEESTTYHSSPGSTQTMHFPESDTT---SGRGEESTTSHSSTTHTISSAPST------T 875
Query: 63 SGLPEEPDQNLSSPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTS 122
S L EEP SSP S +++ S SG S E + S S D T
Sbjct: 876 SALVEEPTSYHSSP-------GSTATTHFPDSSTTSGRSEESTASHSSQDATGTIVLPAR 928
Query: 123 SSASGGLGMTVEGPEGS 139
S+ S LG + P S
Sbjct: 929 STTSVLLGESTTSPISS 945
Score = 31.2 bits (69), Expect = 0.85
Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 16/137 (11%)
Query: 3 LLSGDPCFKTPPSTAKSISIPGQDSSLQLTCKGGGTSSGGSSTNSLTGSRPPKARPTILS 62
L+ + + P + +++ P D++ + +G +++ SST S P +
Sbjct: 3465 LVEESTTYHSSPGSTQTMHFPESDTT---SGRGEESTTSHSSTTHTISSAPST------T 3515
Query: 63 SGLPEEPDQNLSSPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTS 122
S L EEP SSP S +++ S SG S E + S S D T
Sbjct: 3516 SALVEEPTSYHSSP-------GSTATTHFPDSSTTSGRSEESTASHSSQDATGTIVLPAR 3568
Query: 123 SSASGGLGMTVEGPEGS 139
S+ S LG + P S
Sbjct: 3569 STTSVLLGESTTSPISS 3585
Score = 29.6 bits (65), Expect = 2.5
Identities = 31/119 (26%), Positives = 44/119 (36%), Gaps = 7/119 (5%)
Query: 21 SIPGQDSSLQLTCKGGGTSSGGSSTNSLTGSRPPKARPTILSSGLPEEPDQNLSSPEEVF 80
S PG ++ + G ST S + + + +S L EEP SSP
Sbjct: 4557 SSPGSTQTMHFPESNTTSGRGEESTTSHSSTTHTISSAPSTTSALVEEPTSYHSSP---- 4612
Query: 81 HSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTSSSASGGLGMTVEGPEGS 139
S +++ S SG S E + S S D T S+ S LG + P S
Sbjct: 4613 ---GSTATTHFPDSSTTSGRSEESTASHSSQDATGTIVLPARSTTSVLLGESTTSPISS 4668
Score = 28.9 bits (63), Expect = 4.2
Identities = 30/119 (25%), Positives = 43/119 (36%), Gaps = 7/119 (5%)
Query: 21 SIPGQDSSLQLTCKGGGTSSGGSSTNSLTGSRPPKARPTILSSGLPEEPDQNLSSPEEVF 80
S PG ++ + S S + + + P +S L EEP SSP
Sbjct: 1917 SSPGSTQTMHFPESSTASGRSEESRTSHSSTTHTISSPPSTTSALVEEPTSYHSSP---- 1972
Query: 81 HSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTSSSASGGLGMTVEGPEGS 139
S +++ S SG S E + S S D T S+ S LG + P S
Sbjct: 1973 ---GSTATTHFPDSSTTSGRSEESTASHSSQDATGTIVLPARSTTSVLLGESTTSPISS 2028
>gi|239754668 PREDICTED: mucin 12 [Homo sapiens]
Length = 1952
Score = 43.1 bits (100), Expect = 2e-04
Identities = 46/148 (31%), Positives = 60/148 (40%), Gaps = 13/148 (8%)
Query: 13 PPSTAK-----SISIPGQDSSLQLTCKGGGTSSGGSSTNSLTGSRPPKARPTILS----- 62
PP+T S + G SS+ T +++ G S S T P A T S
Sbjct: 1152 PPTTTSAFVELSTTSHGSPSSIPTTHFSASSTTFGRSEESTTVHSSPVAPATTPSPARST 1211
Query: 63 -SGLPEEPDQNLSSP--EEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNT 119
SGL EE SSP + H S +S S++S+ S ST H+ SS S +
Sbjct: 1212 TSGLVEESTAYHSSPGSTQTMHFPESSTASGRSEESRTSHSSTTHTISSPPSTTSALVEE 1271
Query: 120 STSSSASGGLGMTVEGPEGSEREHRPPE 147
TS +S G T PE S R E
Sbjct: 1272 PTSYHSSPGSIATTHFPESSTTSGRSEE 1299
Score = 29.3 bits (64), Expect = 3.2
Identities = 34/137 (24%), Positives = 54/137 (39%), Gaps = 16/137 (11%)
Query: 3 LLSGDPCFKTPPSTAKSISIPGQDSSLQLTCKGGGTSSGGSSTNSLTGSRPPKARPTILS 62
L+ + + P + +++ P D++ + +G +++ SST S P +
Sbjct: 746 LVEESTTYHSSPGSTQTMHFPESDTT---SGRGEESTTSHSSTTHTISSAPST------T 796
Query: 63 SGLPEEPDQNLSSPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTS 122
S L EEP SSP S +++ S SG S E S S D T
Sbjct: 797 SALVEEPTSYHSSP-------GSTATTHFPDSSTTSGRSEESIASHSSQDATGTIVLPAR 849
Query: 123 SSASGGLGMTVEGPEGS 139
S+ S LG + P S
Sbjct: 850 STNSVLLGESTTSPISS 866
>gi|89026265 PREDICTED: mucin 12 [Homo sapiens]
Length = 978
Score = 42.0 bits (97), Expect = 5e-04
Identities = 46/148 (31%), Positives = 59/148 (39%), Gaps = 13/148 (8%)
Query: 13 PPSTAK-----SISIPGQDSSLQLTCKGGGTSSGGSSTNSLTGSRPPKARPTILS----- 62
PP+T S + G SS T +++ G S S T P A T S
Sbjct: 181 PPTTTSAFVELSTTSHGSPSSTPTTHFSASSTTLGRSEESTTVHSSPVATATTPSPARST 240
Query: 63 -SGLPEEPDQNLSSP--EEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNT 119
SGL EE SSP + H S +S S++S+ S ST H+ SS S +
Sbjct: 241 TSGLVEESTAYHSSPGSTQTMHFPESSTASGRSEESRTSHSSTTHTISSPPSTTSALVEE 300
Query: 120 STSSSASGGLGMTVEGPEGSEREHRPPE 147
TS +S G T PE S R E
Sbjct: 301 PTSYHSSPGSIATTHFPESSTTSGRSEE 328
>gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo
sapiens]
Length = 2036
Score = 42.0 bits (97), Expect = 5e-04
Identities = 46/148 (31%), Positives = 59/148 (39%), Gaps = 13/148 (8%)
Query: 13 PPSTAK-----SISIPGQDSSLQLTCKGGGTSSGGSSTNSLTGSRPPKARPTILS----- 62
PP+T S + G SS T +++ G S S T P A T S
Sbjct: 1332 PPTTTSAFVELSTTSHGSPSSTPTTHFSASSTTLGRSEESTTVHSSPVATATTPSPARST 1391
Query: 63 -SGLPEEPDQNLSSP--EEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNT 119
SGL EE SSP + H S +S S++S+ S ST H+ SS S +
Sbjct: 1392 TSGLVEESTAYHSSPGSTQTMHFPESSTASGRSEESRTSHSSTTHTISSPPSTTSALVEE 1451
Query: 120 STSSSASGGLGMTVEGPEGSEREHRPPE 147
TS +S G T PE S R E
Sbjct: 1452 PTSYHSSPGSIATTHFPESSTTSGRSEE 1479
Score = 31.2 bits (69), Expect = 0.85
Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 16/137 (11%)
Query: 3 LLSGDPCFKTPPSTAKSISIPGQDSSLQLTCKGGGTSSGGSSTNSLTGSRPPKARPTILS 62
L+ + + P + +++ P D++ + +G +++ SST S P +
Sbjct: 312 LVEESTTYHSSPGSTQTMHFPESDTT---SGRGEESTTSHSSTTHTISSAPST------T 362
Query: 63 SGLPEEPDQNLSSPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTS 122
S L EEP SSP S +++ S SG S E + S S D T
Sbjct: 363 SALVEEPTSYHSSP-------GSTATTHFPDSSTTSGRSEESTASHSSQDATGTIVLPAR 415
Query: 123 SSASGGLGMTVEGPEGS 139
S+ S LG + P S
Sbjct: 416 STTSVLLGESTTSPISS 432
>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
Length = 1301
Score = 40.8 bits (94), Expect = 0.001
Identities = 49/196 (25%), Positives = 73/196 (37%), Gaps = 3/196 (1%)
Query: 15 STAKSISIPGQDSSLQLTCKGGGTSSGGS-STNSLTGSRPPKARPTILSSGLPEEPDQNL 73
S+ S + DSS SS S S++S S + + SS E D +
Sbjct: 647 SSDSSDNSDSSDSSNSSNSSDSSDSSDSSDSSSSSDSSNSSDSSDSSDSSNSSESSDSSD 706
Query: 74 SSPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTSSSASGGLGMTV 133
SS + S S NS+ + S S S++ S SS SD + N+S SS +S +
Sbjct: 707 SSDSDSSDSSDSSNSNSSDSDSSNSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSNSSD 766
Query: 134 EGPEGSEREHRPPEKPPRPPRPLHLSDRS-FRRKKDSVESHPTWVDDTRIDADAI-VEKI 191
+ + SD S DS S + D+D+
Sbjct: 767 SSDSSDSSDSSDSSNSSDSNDSSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSDSSNSSDS 826
Query: 192 VQSQDFTDGSNTEDSN 207
S D +D SN+ DS+
Sbjct: 827 SNSSDSSDSSNSSDSS 842
Score = 36.6 bits (83), Expect = 0.020
Identities = 47/185 (25%), Positives = 73/185 (39%), Gaps = 28/185 (15%)
Query: 26 DSSLQLTCKGGGTSSGGSSTNSLTGSRPPKARPTILSS---GLPEEPDQNLSSPEEVFHS 82
DSS SS S ++ + S+ ++ SS + D N S + S
Sbjct: 597 DSSNSSDSSDSSDSSDSSDSSDSSDSKSDSSKSESDSSDSDSKSDSSDSNSSDSSDNSDS 656
Query: 83 GHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTSSSASGGLGMTVEGPEGSERE 142
S NSS +S S S++ S SSS SD ++ ++S SS +S + E + S+
Sbjct: 657 SDSSNSSNSSDSSD----SSDSSDSSSSSDSSNSSDSSDSSDSSN----SSESSDSSDSS 708
Query: 143 HRPPEKPPRPPRPLHLSDRSFRRKKDSVESHPTWVDDTRIDADAIVEKIVQSQDFTDGSN 202
SD S DS S+ + D+ +D S D +D SN
Sbjct: 709 DSDSSDS---------SDSSNSNSSDSDSSNSSDSSDSSNSSD--------SSDSSDSSN 751
Query: 203 TEDSN 207
+ DS+
Sbjct: 752 SSDSS 756
Score = 35.4 bits (80), Expect = 0.045
Identities = 33/112 (29%), Positives = 45/112 (40%), Gaps = 4/112 (3%)
Query: 15 STAKSISIPGQDSSLQLTCKGGGTSSGGSSTNSLTGSRPPKARPTILSSGLPEEPDQNLS 74
S+ S S DSS SS S+NS S + + SS + D +
Sbjct: 791 SSDSSDSSNSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSSDSSDSSNSSDSSDSSDSSDG 850
Query: 75 SPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTSSSAS 126
S + + S NSS +S S S+ S SS SD N+S SS +S
Sbjct: 851 SDSDSSNRSDSSNSSDSSDSSD----SSNSSDSSDSSDSNESSNSSDSSDSS 898
Score = 35.0 bits (79), Expect = 0.059
Identities = 47/194 (24%), Positives = 76/194 (39%), Gaps = 5/194 (2%)
Query: 15 STAKSISIPGQDSSLQLTCKGGGTSSGGSSTNSLTGSRPPKARPTILSSGLPEEPDQNLS 74
S+ S S DSS +S+ S+NS S + + SS + D + S
Sbjct: 797 SSNSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSSDSSDSSNSSDSSDSSDSSDGSDSDSS 856
Query: 75 SPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTS-SSASGGLGMTV 133
+ + +S S +SS +S S S S++ + SS+ SD + N+S S SS S +
Sbjct: 857 NRSDSSNSSDSSDSSDSSNSSD-SSDSSDSNESSNSSDSSDSSNSSDSDSSDSSNSSDSS 915
Query: 134 EGPEGSEREHRPPEKPPRPPRPLHLSDRSFRRKKDSVESHPTWVDDTRIDADAIVEKIVQ 193
+ S+ S S S S + D+ +D+
Sbjct: 916 DSSNSSDSSESSNSSDNSNSSDSSNSSDSSDSSDSSNSSDSSNSSDSSNSSDS---SDSN 972
Query: 194 SQDFTDGSNTEDSN 207
S D +D SN+ DS+
Sbjct: 973 SSDSSDSSNSSDSS 986
Score = 34.3 bits (77), Expect = 0.10
Identities = 49/193 (25%), Positives = 72/193 (37%), Gaps = 15/193 (7%)
Query: 15 STAKSISIPGQDSSLQLTCKGGGTSSGGSSTNSLTGSRPPKARPTILSSGLPEEPDQNLS 74
S+ S S DSS +S S+NS S + + SS D + S
Sbjct: 950 SSNSSDSSNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSDSSDSSDSSDSSNSSDSSDS 1009
Query: 75 SPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTSSSASGGLGMTVE 134
S S S NSS +S S S S++ S SS SD + ++S SS +S +
Sbjct: 1010 S-----DSSDSSNSSDSSNSSD-SSNSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDS 1063
Query: 135 GPEGSEREHRPPEKPPRPPRPLHLSDRSFRRKKDSVESHPTWVDDTRIDADAIVEKIVQS 194
+ SD S DS +S + D+ +D+ S
Sbjct: 1064 SDSSDSSDSSDSSDSSDSSESSDSSDSS--NSSDSSDSSDS--SDSSDSSDS-----SDS 1114
Query: 195 QDFTDGSNTEDSN 207
D +D SN+ DS+
Sbjct: 1115 SDSSDSSNSSDSS 1127
>gi|61743946 abl-interactor 1 isoform c [Homo sapiens]
Length = 452
Score = 39.7 bits (91), Expect = 0.002
Identities = 53/217 (24%), Positives = 79/217 (36%), Gaps = 43/217 (19%)
Query: 10 FKTPPSTAKSISIPGQDSSLQLTCKGGGTSSGGSSTNSLTGSRP---PKARPTILSSGLP 66
+ T P+ S PG+ +SL + SSGGS + +GS P A PT P
Sbjct: 213 YMTSPARLGSQHSPGRTASLNQRPRTHSGSSGGSGSRENSGSSSIGIPIAVPT------P 266
Query: 67 EEPDQNLSSPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTSSSAS 126
P ++P G + S Y + +IS + +S +SS S +RR S ++ S
Sbjct: 267 SPPTIGPAAP------GSAPGSQYGTMTRQISRH---NSTTSSTSSGGYRRTPSVTAQFS 317
Query: 127 ------GGLGMTVEGPEGSEREHRPP----------EKPPRPPRPLHLSDRS---FRRKK 167
GG + S PP PP PP P+ D +
Sbjct: 318 AQPHVNGGPLYSQNSIADSPTPPPPPPPDDIPMFDDSPPPPPPPPVDYEDEEAAVVQYND 377
Query: 168 DSVESHPTWVDDTRIDADAIVEKIVQSQDFTDGSNTE 204
+ P W +EK+V D+T + E
Sbjct: 378 PYADGDPAWAPKN------YIEKVVAIYDYTKDKDDE 408
>gi|22325364 ubiquitin associated protein 2 [Homo sapiens]
Length = 1119
Score = 38.9 bits (89), Expect = 0.004
Identities = 37/117 (31%), Positives = 51/117 (43%), Gaps = 23/117 (19%)
Query: 35 GGGTSSGGSSTNSLTGSRPPKARPTILSSGLPEEPDQNLSSPEEVFHSGHSR-------N 87
GGG S T TG PP A P++ S LP P H+G +
Sbjct: 647 GGGRSQQTLDTPKTTG--PPSALPSV--SSLPSTTSCTALLPSTSQHTGDLTSSPLSQLS 702
Query: 88 SSYASQQSKISGY-----STEHSRSSSLSDLTHRRN-------TSTSSSASGGLGMT 132
SS +S QS +S + ST H+ +S S +H+ + TS SSSAS G ++
Sbjct: 703 SSLSSHQSSLSAHAALSSSTSHTHASVESASSHQSSATFSTAATSVSSSASSGASLS 759
>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 6 [Homo sapiens]
Length = 305
Score = 38.5 bits (88), Expect = 0.005
Identities = 37/118 (31%), Positives = 50/118 (42%), Gaps = 18/118 (15%)
Query: 82 SGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTSSSASGGLGMTVEGPEGSER 141
S SR+SS +S S S S+ S SSS S + +TS SSS+S G P S R
Sbjct: 74 STRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSG----SPSPSRR 129
Query: 142 EH------RPPEKPPRPPRPLHLSDRSFRRKKDSVESHPTWVDDTRIDADAIVEKIVQ 193
H R KPP+ RK+ S PT V R+ + + I++
Sbjct: 130 RHDNRRRSRSKSKPPKRDEK--------ERKRRSPSPKPTKVHIGRLTRNVTKDHIME 179
>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 2 [Homo sapiens]
Length = 305
Score = 38.5 bits (88), Expect = 0.005
Identities = 37/118 (31%), Positives = 50/118 (42%), Gaps = 18/118 (15%)
Query: 82 SGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTSSSASGGLGMTVEGPEGSER 141
S SR+SS +S S S S+ S SSS S + +TS SSS+S G P S R
Sbjct: 74 STRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSG----SPSPSRR 129
Query: 142 EH------RPPEKPPRPPRPLHLSDRSFRRKKDSVESHPTWVDDTRIDADAIVEKIVQ 193
H R KPP+ RK+ S PT V R+ + + I++
Sbjct: 130 RHDNRRRSRSKSKPPKRDEK--------ERKRRSPSPKPTKVHIGRLTRNVTKDHIME 179
>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 38.5 bits (88), Expect = 0.005
Identities = 37/118 (31%), Positives = 50/118 (42%), Gaps = 18/118 (15%)
Query: 82 SGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTSSSASGGLGMTVEGPEGSER 141
S SR+SS +S S S S+ S SSS S + +TS SSS+S G P S R
Sbjct: 74 STRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSG----SPSPSRR 129
Query: 142 EH------RPPEKPPRPPRPLHLSDRSFRRKKDSVESHPTWVDDTRIDADAIVEKIVQ 193
H R KPP+ RK+ S PT V R+ + + I++
Sbjct: 130 RHDNRRRSRSKSKPPKRDEK--------ERKRRSPSPKPTKVHIGRLTRNVTKDHIME 179
>gi|169166499 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 38.5 bits (88), Expect = 0.005
Identities = 37/118 (31%), Positives = 50/118 (42%), Gaps = 18/118 (15%)
Query: 82 SGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTSSSASGGLGMTVEGPEGSER 141
S SR+SS +S S S S+ S SSS S + +TS SSS+S G P S R
Sbjct: 74 STRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSG----SPSPSRR 129
Query: 142 EH------RPPEKPPRPPRPLHLSDRSFRRKKDSVESHPTWVDDTRIDADAIVEKIVQ 193
H R KPP+ RK+ S PT V R+ + + I++
Sbjct: 130 RHDNRRRSRSKSKPPKRDEK--------ERKRRSPSPKPTKVHIGRLTRNVTKDHIME 179
>gi|113415498 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 38.5 bits (88), Expect = 0.005
Identities = 37/118 (31%), Positives = 50/118 (42%), Gaps = 18/118 (15%)
Query: 82 SGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTSSSASGGLGMTVEGPEGSER 141
S SR+SS +S S S S+ S SSS S + +TS SSS+S G P S R
Sbjct: 74 STRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSG----SPSPSRR 129
Query: 142 EH------RPPEKPPRPPRPLHLSDRSFRRKKDSVESHPTWVDDTRIDADAIVEKIVQ 193
H R KPP+ RK+ S PT V R+ + + I++
Sbjct: 130 RHDNRRRSRSKSKPPKRDEK--------ERKRRSPSPKPTKVHIGRLTRNVTKDHIME 179
>gi|88973230 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 3 [Homo sapiens]
Length = 305
Score = 38.5 bits (88), Expect = 0.005
Identities = 37/118 (31%), Positives = 50/118 (42%), Gaps = 18/118 (15%)
Query: 82 SGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTSSSASGGLGMTVEGPEGSER 141
S SR+SS +S S S S+ S SSS S + +TS SSS+S G P S R
Sbjct: 74 STRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSG----SPSPSRR 129
Query: 142 EH------RPPEKPPRPPRPLHLSDRSFRRKKDSVESHPTWVDDTRIDADAIVEKIVQ 193
H R KPP+ RK+ S PT V R+ + + I++
Sbjct: 130 RHDNRRRSRSKSKPPKRDEK--------ERKRRSPSPKPTKVHIGRLTRNVTKDHIME 179
>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 38.5 bits (88), Expect = 0.005
Identities = 37/118 (31%), Positives = 50/118 (42%), Gaps = 18/118 (15%)
Query: 82 SGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTSSSASGGLGMTVEGPEGSER 141
S SR+SS +S S S S+ S SSS S + +TS SSS+S G P S R
Sbjct: 74 STRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSG----SPSPSRR 129
Query: 142 EH------RPPEKPPRPPRPLHLSDRSFRRKKDSVESHPTWVDDTRIDADAIVEKIVQ 193
H R KPP+ RK+ S PT V R+ + + I++
Sbjct: 130 RHDNRRRSRSKSKPPKRDEK--------ERKRRSPSPKPTKVHIGRLTRNVTKDHIME 179
>gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 38.5 bits (88), Expect = 0.005
Identities = 37/118 (31%), Positives = 50/118 (42%), Gaps = 18/118 (15%)
Query: 82 SGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTSSSASGGLGMTVEGPEGSER 141
S SR+SS +S S S S+ S SSS S + +TS SSS+S G P S R
Sbjct: 74 STRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSG----SPSPSRR 129
Query: 142 EH------RPPEKPPRPPRPLHLSDRSFRRKKDSVESHPTWVDDTRIDADAIVEKIVQ 193
H R KPP+ RK+ S PT V R+ + + I++
Sbjct: 130 RHDNRRRSRSKSKPPKRDEK--------ERKRRSPSPKPTKVHIGRLTRNVTKDHIME 179
>gi|161016767 mucin 21 [Homo sapiens]
Length = 566
Score = 37.7 bits (86), Expect = 0.009
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
Query: 15 STAKSISIPGQDSSLQLTCKGGGTSSGG-SSTNSLTGSRPPKARPTILSSGLPEEPDQNL 73
ST S + +S G GT++ SST S + + +SSG+ +
Sbjct: 231 STTSSGASTATNSESSTPSSGAGTATNSESSTTSSGAGTATNSESSTVSSGISTVTNSES 290
Query: 74 SSPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTSSSAS 126
S+P ++ + SS S + + S + SS S T+ +++TSS AS
Sbjct: 291 STPSSGANTATNSESSTTSSGANTATNSDSSTTSSGASTATNSESSTTSSGAS 343
Score = 32.7 bits (73), Expect = 0.29
Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
Query: 15 STAKSISIPGQDSSLQLTCKGGGTSSGGSSTNSLTG-SRPPKARPTILSSGLPEEPDQNL 73
ST S + +S T G GT++ S+ +G S + + SSG +
Sbjct: 246 STPSSGAGTATNSESSTTSSGAGTATNSESSTVSSGISTVTNSESSTPSSGANTATNSES 305
Query: 74 SSPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTSSSAS 126
S+ ++ + +SS S + + S + SS S T+ +++TSS AS
Sbjct: 306 STTSSGANTATNSDSSTTSSGASTATNSESSTTSSGASTATNSESSTTSSGAS 358
Score = 31.6 bits (70), Expect = 0.65
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 5/115 (4%)
Query: 15 STAKSISIPGQDSSLQLTCKGGGTSSGG-SSTNSLTGSRPPKARPTILSSGLPEEPDQNL 73
ST S + +S + T G GT++ SST S S + + SSG +
Sbjct: 201 STTSSGASTATNSESRTTSNGAGTATNSESSTTSSGASTATNSESSTPSSGAGTATNSES 260
Query: 74 SSPEEVFHSGHSRNSSYASQQSKISGYSTEHSR--SSSLSDLTHRRNTSTSSSAS 126
S+ +G + NS ++ S IS + S SS + T+ +++TSS A+
Sbjct: 261 STTSS--GAGTATNSESSTVSSGISTVTNSESSTPSSGANTATNSESSTTSSGAN 313
Score = 31.6 bits (70), Expect = 0.65
Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 1/113 (0%)
Query: 15 STAKSISIPGQDSSLQLTCKGGGTSSGG-SSTNSLTGSRPPKARPTILSSGLPEEPDQNL 73
ST S + +S T G T++ SST S S + + SSG +
Sbjct: 306 STTSSGANTATNSDSSTTSSGASTATNSESSTTSSGASTATNSESSTTSSGASTATNSGS 365
Query: 74 SSPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTSSSAS 126
S+ + + SS S + + S + SS S T+ +++ SS AS
Sbjct: 366 STTSSGTSTATNSESSTVSSGASTATTSESSTTSSGASTATNSESSTVSSGAS 418
Score = 31.2 bits (69), Expect = 0.85
Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 1/113 (0%)
Query: 15 STAKSISIPGQDSSLQLTCKGGGTSSGG-SSTNSLTGSRPPKARPTILSSGLPEEPDQNL 73
ST S + +S T G T++ SST S S + + SSG +
Sbjct: 126 STPSSGASTATNSDSSTTSSGASTATNSDSSTTSSEASTATNSESSTTSSGASTATNSES 185
Query: 74 SSPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTSSSAS 126
S+ + + SS S + + S + S+ T+ +++TSS AS
Sbjct: 186 STVSSRASTATNSESSTTSSGASTATNSESRTTSNGAGTATNSESSTTSSGAS 238
Score = 31.2 bits (69), Expect = 0.85
Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 1/113 (0%)
Query: 15 STAKSISIPGQDSSLQLTCKGGGTSSGG-SSTNSLTGSRPPKARPTILSSGLPEEPDQNL 73
ST S + +S T G T++ SST S S + + SSG +
Sbjct: 291 STPSSGANTATNSESSTTSSGANTATNSDSSTTSSGASTATNSESSTTSSGASTATNSES 350
Query: 74 SSPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTSSSAS 126
S+ + + SS S + + S + SS S T +++TSS AS
Sbjct: 351 STTSSGASTATNSGSSTTSSGTSTATNSESSTVSSGASTATTSESSTTSSGAS 403
Score = 30.8 bits (68), Expect = 1.1
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 1/113 (0%)
Query: 15 STAKSISIPGQDSSLQLTCKGGGTSSGG-SSTNSLTGSRPPKARPTILSSGLPEEPDQNL 73
ST S + +S T G T++ SST S S + + SSG +
Sbjct: 321 STTSSGASTATNSESSTTSSGASTATNSESSTTSSGASTATNSGSSTTSSGTSTATNSES 380
Query: 74 SSPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTSSSAS 126
S+ + + SS S + + S + SS S T+ +++TSS A+
Sbjct: 381 STVSSGASTATTSESSTTSSGASTATNSESSTVSSGASTATNSESSTTSSGAN 433
Score = 30.8 bits (68), Expect = 1.1
Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 2/119 (1%)
Query: 15 STAKSISIPGQDSSLQLTCKGGGTSSG-GSSTNSLTGSRPPKARPTILSSGLPEEPDQNL 73
ST S + +S T G T++ GSST S S + + +SSG
Sbjct: 336 STTSSGASTATNSESSTTSSGASTATNSGSSTTSSGTSTATNSESSTVSSGASTATTSES 395
Query: 74 SSPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTSSSASGGLGMT 132
S+ + + SS S + + ++E S +SS ++ +S +S+ SG +T
Sbjct: 396 STTSSGASTATNSESSTVSSGAS-TATNSESSTTSSGANTATNSGSSVTSAGSGTAALT 453
Score = 30.4 bits (67), Expect = 1.4
Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 7/119 (5%)
Query: 15 STAKSISIPGQDSSLQLTCKGGGTSSGGSSTNSLTGSRPPKARPTIL-------SSGLPE 67
+T S S+ + TSSG S+ + S P T SSG
Sbjct: 90 ATNSEFSTVSSGISIATNSESSTTSSGASTATNSESSTPSSGASTATNSDSSTTSSGAST 149
Query: 68 EPDQNLSSPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTSSSAS 126
+ + S+ + + SS S + + S + SS S T+ +++TSS AS
Sbjct: 150 ATNSDSSTTSSEASTATNSESSTTSSGASTATNSESSTVSSRASTATNSESSTTSSGAS 208
Score = 28.9 bits (63), Expect = 4.2
Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 4/101 (3%)
Query: 12 TPPSTAKSISIPGQDSSLQLTCKGGGTSSGGSSTNSLTGSRPPKARPTILSSGLPEEPDQ 71
T +T S +S T + TSSG S+ + S T +S E
Sbjct: 372 TSTATNSESSTVSSGASTATTSESSTTSSGASTATNSESSTVSSGASTATNS----ESST 427
Query: 72 NLSSPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSD 112
S +SG S S+ + + ++T HS S+++S+
Sbjct: 428 TSSGANTATNSGSSVTSAGSGTAALTGMHTTSHSASTAVSE 468
Score = 28.5 bits (62), Expect = 5.5
Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 10/115 (8%)
Query: 12 TPPSTAKSISIPGQDSSLQLTCKGGGTSSGGSSTNSLTGSRPPKARPTILSSGLPEEPDQ 71
T +T S+ G ++ T G +S G ST +++GS ++ S+G+ +
Sbjct: 29 TSANTGSSVISSGASTA---TNSGSSVTSSGVSTATISGS-------SVTSNGVSIVTNS 78
Query: 72 NLSSPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTSSSAS 126
+ + + S S I+ S + SS S T+ +++ SS AS
Sbjct: 79 EFHTTSSGISTATNSEFSTVSSGISIATNSESSTTSSGASTATNSESSTPSSGAS 133
Score = 28.1 bits (61), Expect = 7.2
Identities = 41/194 (21%), Positives = 66/194 (34%), Gaps = 30/194 (15%)
Query: 38 TSSGGSSTNSLTGSRPPKARPTILSSGLPEEPDQNLSSPEEVFHSGHSRNSSYASQQSKI 97
T+S +ST++ TGS +++SSG + S + SS S I
Sbjct: 22 TNSNETSTSANTGS-------SVISSGASTATNSGSSVTSSGVSTATISGSSVTSNGVSI 74
Query: 98 SGYSTEHSRSSSLSDLTHRRNTSTSSSASGGLGMTVEGPEGSEREHRPPEKPPRPPRPLH 157
S H+ SS +S T+ S S+ S G+ + +
Sbjct: 75 VTNSEFHTTSSGISTATN----SEFSTVSSGISIATNSESST------------------ 112
Query: 158 LSDRSFRRKKDSVESHPTWVDDTRIDADAIVEKIVQSQDFTDGSNTEDSNLRLFVSRDGS 217
+ +S S P+ T ++D+ S S+T S + + S
Sbjct: 113 -TSSGASTATNSESSTPSSGASTATNSDSSTTSSGASTATNSDSSTTSSEASTATNSESS 171
Query: 218 ATLSGIQLATRVSS 231
T SG AT S
Sbjct: 172 TTSSGASTATNSES 185
Score = 27.7 bits (60), Expect = 9.4
Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 1/112 (0%)
Query: 15 STAKSISIPGQDSSLQLTCKGGGTSSGG-SSTNSLTGSRPPKARPTILSSGLPEEPDQNL 73
ST S + +S T G T++ SST S S + + SSG +
Sbjct: 156 STTSSEASTATNSESSTTSSGASTATNSESSTVSSRASTATNSESSTTSSGASTATNSES 215
Query: 74 SSPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTSSSA 125
+ + + SS S + + S + SS T+ +++TSS A
Sbjct: 216 RTTSNGAGTATNSESSTTSSGASTATNSESSTPSSGAGTATNSESSTTSSGA 267
>gi|28559039 mediator complex subunit 1 [Homo sapiens]
Length = 1581
Score = 37.0 bits (84), Expect = 0.015
Identities = 49/168 (29%), Positives = 65/168 (38%), Gaps = 27/168 (16%)
Query: 8 PCFKTPPSTAKSISIP------GQDSS-LQLTCKGGGTSSGGSSTNSLTGSRPPKARPTI 60
P TPP +I IP G+ SS Q T G +SSG S +S + S A
Sbjct: 1053 PGVATPPIPKITIQIPKGTVMVGKPSSHSQYTSSGSVSSSGSKSHHSHSSSSSSSAS--- 1109
Query: 61 LSSGLPEEPDQNLSSPEEVFHSGHSRNSSYASQQSKISGYS---------TEHSRSSSLS 111
+SG + SS ++ S +S S S QSK S S T+H SS S
Sbjct: 1110 -TSGKMKSSKSEGSSSSKLSSSMYSSQGSSGSSQSKNSSQSGGKPGSSPITKHGLSSGSS 1168
Query: 112 DLTHRRNTSTSSSASGGLGMTVEGPEGSEREHRPP---EKPPRPPRPL 156
+ SS + L P S RPP +K P +P+
Sbjct: 1169 STKMKPQGKPSSLMNPSLSK----PNISPSHSRPPGGSDKLASPMKPV 1212
Score = 31.6 bits (70), Expect = 0.65
Identities = 35/121 (28%), Positives = 48/121 (39%), Gaps = 18/121 (14%)
Query: 12 TPPST-AKS-ISIPGQDSSLQLTCKGGG--TSSGGSSTNSLTGSRPPKARPTILSSGLPE 67
TPPS+ AKS IS S + T G +SSG S+ SL+ PP + SS
Sbjct: 1215 TPPSSKAKSPISSGSGGSHMSGTSSSSGMKSSSGLGSSGSLSQKTPPSSNSCTASS---- 1270
Query: 68 EPDQNLSSPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTSSSASG 127
F S S SS +Q G S ++ SL+ + + +S G
Sbjct: 1271 ----------SSFSSSGSSMSSSQNQHGSSKGKSPSRNKKPSLTAVIDKLKHGVVTSGPG 1320
Query: 128 G 128
G
Sbjct: 1321 G 1321
Score = 30.0 bits (66), Expect = 1.9
Identities = 35/132 (26%), Positives = 51/132 (38%), Gaps = 9/132 (6%)
Query: 11 KTPPSTAKSISIPGQDSSLQLTCKGGGTSSGG---SSTNSLTGSRPPKARPTILSSGLPE 67
+TP + KS P + K SS + S GS+ P S+G +
Sbjct: 997 RTPSNDGKSKDKPPKRKKADTEGKSPSHSSSNRPFTPPTSTGGSKSPG------SAGRSQ 1050
Query: 68 EPDQNLSSPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTSSSASG 127
P + P + + + S S Y++ S SSS S H ++S+SSSAS
Sbjct: 1051 TPPGVATPPIPKITIQIPKGTVMVGKPSSHSQYTSSGSVSSSGSKSHHSHSSSSSSSAST 1110
Query: 128 GLGMTVEGPEGS 139
M EGS
Sbjct: 1111 SGKMKSSKSEGS 1122
Score = 28.9 bits (63), Expect = 4.2
Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 18/114 (15%)
Query: 37 GTSSGGSSTNSLTGSRPPKARPTILSSGLPEEPDQNLSSPEEVFHSGHSR----NSSYAS 92
G SSG SST P+ +P+ L + +LS P HSR + AS
Sbjct: 1162 GLSSGSSSTKM-----KPQGKPSSLMN-------PSLSKPN--ISPSHSRPPGGSDKLAS 1207
Query: 93 QQSKISGYSTEHSRSSSLSDLTHRRNTSTSSSASGGLGMTVEGPEGSEREHRPP 146
+ G S +S + + S +SS+SG + G GS + PP
Sbjct: 1208 PMKPVPGTPPSSKAKSPISSGSGGSHMSGTSSSSGMKSSSGLGSSGSLSQKTPP 1261
>gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 3 [Homo sapiens]
Length = 568
Score = 37.0 bits (84), Expect = 0.015
Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 12/119 (10%)
Query: 76 PEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTSSSASGGLGMTVEG 135
P H+ S +SS +S S S S+ S SSS S ++S+SSS+S +
Sbjct: 142 PNRSIHTSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------SSSSSSSSSSSSSTSFSK 195
Query: 136 PEGSEREHRPPEKPPRPPRPLHLS---DRSFRRKKDSVESHPTWVDDTRIDADAIVEKI 191
P +EH+ EKP + R H S + S K S ES ++ + + IV K+
Sbjct: 196 PHKLMKEHK--EKPSKDSRE-HKSAFKEPSRDHNKSSKESSKKPKENKPLKEEKIVPKM 251
>gi|196115147 CDKN1A interacting zinc finger protein 1 isoform 1
[Homo sapiens]
Length = 898
Score = 37.0 bits (84), Expect = 0.015
Identities = 45/191 (23%), Positives = 70/191 (36%), Gaps = 31/191 (16%)
Query: 4 LSGDPCFKTPPSTAKSISIPGQDSSLQLTCKGGGTSSGGSSTNSLTGSRPPKARPTILSS 63
L G F PP+T + + ++L +G G +S G + SLT PP+ L
Sbjct: 94 LQGLDQFAMPPATYDTAGLTMPTATLG-NLRGYGMASPGLAAPSLT---PPQLATPNLQQ 149
Query: 64 GLPEEPDQNLSSPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTSS 123
P+ Q+L P V G N S Q +SG + + +S S +R+++S+ +
Sbjct: 150 FFPQATRQSLLGPPPV---GVPMNPS----QFNLSGRNPQKQARTSSSTTPNRKDSSSQT 202
Query: 124 SASGGLGMTVEG--------------------PEGSEREHRPPEKPPRPPRPLHLSDRSF 163
EG PE +E R P P P L +
Sbjct: 203 MPVEDKSDPPEGSEEAAEPRMDTPEDQDLPPCPEDIAKEKRTPAPEPEPCEASELPAKRL 262
Query: 164 RRKKDSVESHP 174
R ++ E P
Sbjct: 263 RSSEEPTEKEP 273
>gi|196115141 CDKN1A interacting zinc finger protein 1 isoform 2
[Homo sapiens]
Length = 842
Score = 37.0 bits (84), Expect = 0.015
Identities = 45/191 (23%), Positives = 70/191 (36%), Gaps = 31/191 (16%)
Query: 4 LSGDPCFKTPPSTAKSISIPGQDSSLQLTCKGGGTSSGGSSTNSLTGSRPPKARPTILSS 63
L G F PP+T + + ++L +G G +S G + SLT PP+ L
Sbjct: 94 LQGLDQFAMPPATYDTAGLTMPTATLG-NLRGYGMASPGLAAPSLT---PPQLATPNLQQ 149
Query: 64 GLPEEPDQNLSSPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTSS 123
P+ Q+L P V G N S Q +SG + + +S S +R+++S+ +
Sbjct: 150 FFPQATRQSLLGPPPV---GVPMNPS----QFNLSGRNPQKQARTSSSTTPNRKDSSSQT 202
Query: 124 SASGGLGMTVEG--------------------PEGSEREHRPPEKPPRPPRPLHLSDRSF 163
EG PE +E R P P P L +
Sbjct: 203 MPVEDKSDPPEGSEEAAEPRMDTPEDQDLPPCPEDIAKEKRTPAPEPEPCEASELPAKRL 262
Query: 164 RRKKDSVESHP 174
R ++ E P
Sbjct: 263 RSSEEPTEKEP 273
>gi|42544179 CDKN1A interacting zinc finger protein 1 isoform 1
[Homo sapiens]
Length = 898
Score = 37.0 bits (84), Expect = 0.015
Identities = 45/191 (23%), Positives = 70/191 (36%), Gaps = 31/191 (16%)
Query: 4 LSGDPCFKTPPSTAKSISIPGQDSSLQLTCKGGGTSSGGSSTNSLTGSRPPKARPTILSS 63
L G F PP+T + + ++L +G G +S G + SLT PP+ L
Sbjct: 94 LQGLDQFAMPPATYDTAGLTMPTATLG-NLRGYGMASPGLAAPSLT---PPQLATPNLQQ 149
Query: 64 GLPEEPDQNLSSPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTSS 123
P+ Q+L P V G N S Q +SG + + +S S +R+++S+ +
Sbjct: 150 FFPQATRQSLLGPPPV---GVPMNPS----QFNLSGRNPQKQARTSSSTTPNRKDSSSQT 202
Query: 124 SASGGLGMTVEG--------------------PEGSEREHRPPEKPPRPPRPLHLSDRSF 163
EG PE +E R P P P L +
Sbjct: 203 MPVEDKSDPPEGSEEAAEPRMDTPEDQDLPPCPEDIAKEKRTPAPEPEPCEASELPAKRL 262
Query: 164 RRKKDSVESHP 174
R ++ E P
Sbjct: 263 RSSEEPTEKEP 273
>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
Length = 953
Score = 36.6 bits (83), Expect = 0.020
Identities = 34/109 (31%), Positives = 46/109 (42%), Gaps = 13/109 (11%)
Query: 47 SLTGSRPPKARPTILSSGLPEEPDQNLSSPEEVFHSGHSRNSSYASQQSKISGYSTEHSR 106
S++ SR + R T SS ++ S SG SR+ S + S S YS+ SR
Sbjct: 532 SVSPSRARRRRKTSASSASASNSSRSSSRSSSYSGSGSSRSRS---RSSSYSSYSSRSSR 588
Query: 107 SSSLSDLTHRRNTSTSSSASGGLGMTVEGPEGSEREHRPPEKPPRPPRP 155
SS S + R+ S SSS S P + HRP + P P
Sbjct: 589 HSSFSG-SRSRSRSFSSSPS---------PSPTPSPHRPSIRTKGEPAP 627
>gi|189011568 adenomatous polyposis coli [Homo sapiens]
Length = 2843
Score = 36.2 bits (82), Expect = 0.026
Identities = 51/202 (25%), Positives = 74/202 (36%), Gaps = 26/202 (12%)
Query: 37 GTSSGGSSTNSLTGSRPPKARPTILSSGLPEEPDQNLSSPEEVFHSGHSRNSSYASQQSK 96
G + SST+ ++ PP P +S P E +SP S S S A Q S+
Sbjct: 2235 GVRNSSSSTSPVSKKGPPLKTP---ASKSPSEGQTATTSPRGAKPSVKSELSPVARQTSQ 2291
Query: 97 ISGYSTEHSRSSSLSDLTHRRNTSTSSSASGGLGMTVEGP-----EGSEREHRPPEK--- 148
I G S SRS S R+++ S A L ++ P PP K
Sbjct: 2292 IGGSSKAPSRSGS-------RDSTPSRPAQQPLSRPIQSPGRNSISPGRNGISPPNKLSQ 2344
Query: 149 PPRPPRPLHLSDRSFRRKKDSVESHPTWVDDTRI--------DADAIVEKIVQSQDFTDG 200
PR P S +S K S S + + +A +I S+
Sbjct: 2345 LPRTSSPSTASTKSSGSGKMSYTSPGRQMSQQNLTKQTGLSKNASSIPRSESASKGLNQM 2404
Query: 201 SNTEDSNLRLFVSRDGSATLSG 222
+N +N ++ +SR S SG
Sbjct: 2405 NNGNGANKKVELSRMSSTKSSG 2426
>gi|189011566 adenomatous polyposis coli [Homo sapiens]
Length = 2843
Score = 36.2 bits (82), Expect = 0.026
Identities = 51/202 (25%), Positives = 74/202 (36%), Gaps = 26/202 (12%)
Query: 37 GTSSGGSSTNSLTGSRPPKARPTILSSGLPEEPDQNLSSPEEVFHSGHSRNSSYASQQSK 96
G + SST+ ++ PP P +S P E +SP S S S A Q S+
Sbjct: 2235 GVRNSSSSTSPVSKKGPPLKTP---ASKSPSEGQTATTSPRGAKPSVKSELSPVARQTSQ 2291
Query: 97 ISGYSTEHSRSSSLSDLTHRRNTSTSSSASGGLGMTVEGP-----EGSEREHRPPEK--- 148
I G S SRS S R+++ S A L ++ P PP K
Sbjct: 2292 IGGSSKAPSRSGS-------RDSTPSRPAQQPLSRPIQSPGRNSISPGRNGISPPNKLSQ 2344
Query: 149 PPRPPRPLHLSDRSFRRKKDSVESHPTWVDDTRI--------DADAIVEKIVQSQDFTDG 200
PR P S +S K S S + + +A +I S+
Sbjct: 2345 LPRTSSPSTASTKSSGSGKMSYTSPGRQMSQQNLTKQTGLSKNASSIPRSESASKGLNQM 2404
Query: 201 SNTEDSNLRLFVSRDGSATLSG 222
+N +N ++ +SR S SG
Sbjct: 2405 NNGNGANKKVELSRMSSTKSSG 2426
>gi|53759122 adenomatous polyposis coli [Homo sapiens]
Length = 2843
Score = 36.2 bits (82), Expect = 0.026
Identities = 51/202 (25%), Positives = 74/202 (36%), Gaps = 26/202 (12%)
Query: 37 GTSSGGSSTNSLTGSRPPKARPTILSSGLPEEPDQNLSSPEEVFHSGHSRNSSYASQQSK 96
G + SST+ ++ PP P +S P E +SP S S S A Q S+
Sbjct: 2235 GVRNSSSSTSPVSKKGPPLKTP---ASKSPSEGQTATTSPRGAKPSVKSELSPVARQTSQ 2291
Query: 97 ISGYSTEHSRSSSLSDLTHRRNTSTSSSASGGLGMTVEGP-----EGSEREHRPPEK--- 148
I G S SRS S R+++ S A L ++ P PP K
Sbjct: 2292 IGGSSKAPSRSGS-------RDSTPSRPAQQPLSRPIQSPGRNSISPGRNGISPPNKLSQ 2344
Query: 149 PPRPPRPLHLSDRSFRRKKDSVESHPTWVDDTRI--------DADAIVEKIVQSQDFTDG 200
PR P S +S K S S + + +A +I S+
Sbjct: 2345 LPRTSSPSTASTKSSGSGKMSYTSPGRQMSQQNLTKQTGLSKNASSIPRSESASKGLNQM 2404
Query: 201 SNTEDSNLRLFVSRDGSATLSG 222
+N +N ++ +SR S SG
Sbjct: 2405 NNGNGANKKVELSRMSSTKSSG 2426
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 35.8 bits (81), Expect = 0.034
Identities = 39/145 (26%), Positives = 56/145 (38%), Gaps = 24/145 (16%)
Query: 36 GGTSSGGSSTNSLTG-SRPPKARPTILSSGLPEEPDQNLSSPEEVFHSGHSRNSSYASQQ 94
GG +GG + ++ + + P + + SS + SS S S +SS +S
Sbjct: 2593 GGCGTGGRNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2652
Query: 95 SKISGYSTEHSRSSSLSDLTHRRNTSTSS------------SASGGLGMTVEGPEGSER- 141
S S S+ S SSS S T ++S SS SA L G R
Sbjct: 2653 SSSSSSSSSSSSSSSSSSSTTDEDSSCSSDDEAAPAPTAGPSAQAALPTKATKQAGKARP 2712
Query: 142 -EHRPPEK---------PPRPPRPL 156
H P +K PP+P +PL
Sbjct: 2713 SAHSPGKKTPAPQPQAPPPQPTQPL 2737
Score = 35.0 bits (79), Expect = 0.059
Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 16/135 (11%)
Query: 5 SGDPCFKTPPSTAKSISIPGQDSSLQLTCKGGGTSSGGSSTNSLT-------------GS 51
SG+P P A++ ++S + G +SS SS++S + G
Sbjct: 2538 SGNP---KSPDKAQAEQDGAEESESSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGG 2594
Query: 52 RPPKARPTILSSGLPEEPDQNLSSPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLS 111
R +S P + SS S S +SS +S S S S+ S SSS S
Sbjct: 2595 CGTGGRNCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2654
Query: 112 DLTHRRNTSTSSSAS 126
+ ++S+SSS+S
Sbjct: 2655 SSSSSSSSSSSSSSS 2669
Score = 33.9 bits (76), Expect = 0.13
Identities = 29/112 (25%), Positives = 43/112 (38%)
Query: 15 STAKSISIPGQDSSLQLTCKGGGTSSGGSSTNSLTGSRPPKARPTILSSGLPEEPDQNLS 74
S++ S S G ++ + G G+ + + + A P SS + S
Sbjct: 2569 SSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASPASSSSSSSSSSSSSSS 2628
Query: 75 SPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTSSSAS 126
S S S +SS +S S S S+ S SSS S + T SS S
Sbjct: 2629 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCS 2680
Score = 33.1 bits (74), Expect = 0.22
Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 8/118 (6%)
Query: 15 STAKSISIPGQDSSLQLTCKGGGTSSGGSSTNSL------TGSRPPKARPTILSSGLPEE 68
S + S S G SS + G + G + TG R A + +S P
Sbjct: 2557 SESSSSSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAAS--PAS 2614
Query: 69 PDQNLSSPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTSTSSSAS 126
+ SS S S +SS +S S S S+ S SSS S + ++S+SSS++
Sbjct: 2615 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSST 2672
Score = 30.4 bits (67), Expect = 1.4
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 13/93 (13%)
Query: 50 GSRPPKAR-PTILSSGLPEEPDQNLSSPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSS 108
GS PKA P L +EP L+ + SG+ ++ A Q++ G S SS
Sbjct: 2509 GSSEPKAPWPKATDGDLAQEPGPGLTFED----SGNPKSPDKA--QAEQDGAEESESSSS 2562
Query: 109 SLSDLTHRRNTSTSSSASGGLGMTVEGPEGSER 141
S S +S+SSS+S G EG E ++
Sbjct: 2563 SSS------GSSSSSSSSSSSGSETEGEEEGDK 2589
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.306 0.125 0.352
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,073,816
Number of Sequences: 37866
Number of extensions: 575723
Number of successful extensions: 5276
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 323
Number of HSP's that attempted gapping in prelim test: 4467
Number of HSP's gapped (non-prelim): 933
length of query: 242
length of database: 18,247,518
effective HSP length: 99
effective length of query: 143
effective length of database: 14,498,784
effective search space: 2073326112
effective search space used: 2073326112
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.