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Search of human proteins with 42558260
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|42558260 zinc finger, CCHC domain containing 13 [Homo
sapiens]
(166 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|42558260 zinc finger, CCHC domain containing 13 [Homo sapiens] 373 e-104
gi|187608750 zinc finger protein 9 isoform 6 [Homo sapiens] 221 2e-58
gi|187608738 zinc finger protein 9 isoform 4 [Homo sapiens] 218 2e-57
gi|187608744 zinc finger protein 9 isoform 5 [Homo sapiens] 217 4e-57
gi|4827071 zinc finger protein 9 isoform 3 [Homo sapiens] 216 5e-57
gi|187608726 zinc finger protein 9 isoform 1 [Homo sapiens] 213 6e-56
gi|187608732 zinc finger protein 9 isoform 2 [Homo sapiens] 212 1e-55
gi|110815844 zinc finger, CCHC domain containing 7 [Homo sapiens] 53 1e-07
gi|196259805 zinc finger, CCHC domain containing 9 [Homo sapiens] 52 3e-07
gi|196259803 zinc finger, CCHC domain containing 9 [Homo sapiens] 52 3e-07
gi|14150027 zinc finger, CCHC domain containing 9 [Homo sapiens] 52 3e-07
gi|29648305 zinc finger, CCHC domain containing 3 [Homo sapiens] 46 1e-05
gi|13375938 lin-28 homolog [Homo sapiens] 44 6e-05
gi|57863250 zinc finger, CCHC domain containing 11 isoform c [Ho... 44 8e-05
gi|51972214 lin-28 homolog B [Homo sapiens] 42 3e-04
gi|4508001 zinc finger protein 165 [Homo sapiens] 42 3e-04
gi|157952211 zinc finger protein 250 isoform b [Homo sapiens] 41 5e-04
gi|45387947 zinc finger protein 250 isoform a [Homo sapiens] 41 5e-04
gi|57863246 zinc finger, CCHC domain containing 11 isoform b [Ho... 40 7e-04
gi|53292629 keratin associated protein 5-11 [Homo sapiens] 40 0.001
gi|57863248 zinc finger, CCHC domain containing 11 isoform a [Ho... 40 0.001
gi|224549000 zinc finger protein 480 [Homo sapiens] 40 0.001
gi|72384335 zinc finger protein 311 [Homo sapiens] 40 0.001
gi|96303826 zinc finger protein 16 [Homo sapiens] 39 0.002
gi|38045954 zinc finger protein 16 [Homo sapiens] 39 0.002
gi|239753095 PREDICTED: similar to hCG1725380 [Homo sapiens] 39 0.002
gi|122891874 keratin associated protein 5-5 [Homo sapiens] 39 0.002
gi|239747658 PREDICTED: similar to hCG1725380 [Homo sapiens] 39 0.003
gi|239741529 PREDICTED: similar to hCG1725380 [Homo sapiens] 39 0.003
gi|189571667 zinc finger protein 696 [Homo sapiens] 39 0.003
>gi|42558260 zinc finger, CCHC domain containing 13 [Homo sapiens]
Length = 166
Score = 373 bits (957), Expect = e-104
Identities = 166/166 (100%), Positives = 166/166 (100%)
Query: 1 MSSKDFFACGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNC 60
MSSKDFFACGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNC
Sbjct: 1 MSSKDFFACGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNC 60
Query: 61 VLLGNICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQKCYSCGKLGH 120
VLLGNICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQKCYSCGKLGH
Sbjct: 61 VLLGNICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQKCYSCGKLGH 120
Query: 121 IQKDCAQVKCYRCGEIGHVAINCSKARPGQLLPLRQIPTSSQGMSQ 166
IQKDCAQVKCYRCGEIGHVAINCSKARPGQLLPLRQIPTSSQGMSQ
Sbjct: 121 IQKDCAQVKCYRCGEIGHVAINCSKARPGQLLPLRQIPTSSQGMSQ 166
>gi|187608750 zinc finger protein 9 isoform 6 [Homo sapiens]
Length = 170
Score = 221 bits (564), Expect = 2e-58
Identities = 99/145 (68%), Positives = 108/145 (74%)
Query: 1 MSSKDFFACGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNC 60
MSS + F CG SGHWAR CP GG GR GRG Q S++L CY CGESG AK+C
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC 60
Query: 61 VLLGNICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQKCYSCGKLGH 120
L + CYNCGR GHIAKDCK+PKRER Q CY CG+ GHLARDCD EQKCYSCG+ GH
Sbjct: 61 DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGH 120
Query: 121 IQKDCAQVKCYRCGEIGHVAINCSK 145
IQKDC +VKCYRCGE GHVAINCSK
Sbjct: 121 IQKDCTKVKCYRCGETGHVAINCSK 145
Score = 35.0 bits (79), Expect = 0.029
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 7 FACGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNCVL 62
++CG GH + C + R G G + S T CY CGESG A+ C +
Sbjct: 113 YSCGEFGHIQKDCTKVKC--YRCGETGHVAINCSKTSEVNCYRCGESGHLARECTI 166
>gi|187608738 zinc finger protein 9 isoform 4 [Homo sapiens]
Length = 172
Score = 218 bits (555), Expect = 2e-57
Identities = 99/147 (67%), Positives = 109/147 (74%), Gaps = 2/147 (1%)
Query: 1 MSSKDFFACGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNC 60
MSS + F CG SGHWAR CP GG GR GRG Q S++L CY CGESG AK+C
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC 60
Query: 61 VLLGNI--CYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQKCYSCGKL 118
L ++ CYNCGR GHIAKDCK+PKRER Q CY CG+ GHLARDCD EQKCYSCG+
Sbjct: 61 DLQEDVEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEF 120
Query: 119 GHIQKDCAQVKCYRCGEIGHVAINCSK 145
GHIQKDC +VKCYRCGE GHVAINCSK
Sbjct: 121 GHIQKDCTKVKCYRCGETGHVAINCSK 147
Score = 35.0 bits (79), Expect = 0.029
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 7 FACGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNCVL 62
++CG GH + C + R G G + S T CY CGESG A+ C +
Sbjct: 115 YSCGEFGHIQKDCTKVKC--YRCGETGHVAINCSKTSEVNCYRCGESGHLARECTI 168
>gi|187608744 zinc finger protein 9 isoform 5 [Homo sapiens]
Length = 171
Score = 217 bits (552), Expect = 4e-57
Identities = 99/146 (67%), Positives = 108/146 (73%), Gaps = 1/146 (0%)
Query: 1 MSSKDFFACGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNC 60
MSS + F CG SGHWAR CP GG GR GRG Q S++L CY CGESG AK+C
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC 60
Query: 61 VLLGN-ICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQKCYSCGKLG 119
L + CYNCGR GHIAKDCK+PKRER Q CY CG+ GHLARDCD EQKCYSCG+ G
Sbjct: 61 DLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFG 120
Query: 120 HIQKDCAQVKCYRCGEIGHVAINCSK 145
HIQKDC +VKCYRCGE GHVAINCSK
Sbjct: 121 HIQKDCTKVKCYRCGETGHVAINCSK 146
Score = 35.0 bits (79), Expect = 0.029
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 7 FACGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNCVL 62
++CG GH + C + R G G + S T CY CGESG A+ C +
Sbjct: 114 YSCGEFGHIQKDCTKVKC--YRCGETGHVAINCSKTSEVNCYRCGESGHLARECTI 167
>gi|4827071 zinc finger protein 9 isoform 3 [Homo sapiens]
Length = 177
Score = 216 bits (551), Expect = 5e-57
Identities = 101/152 (66%), Positives = 110/152 (72%), Gaps = 7/152 (4%)
Query: 1 MSSKDFFACGHSGHWARGCPRGGAGGR--RGGGHG-----RGSQCGSTTLSYTCYCCGES 53
MSS + F CG SGHWAR CP GG GR R G G RG Q S++L CY CGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES 60
Query: 54 GRNAKNCVLLGNICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQKCY 113
G AK+C L + CYNCGR GHIAKDCK+PKRER Q CY CG+ GHLARDCD EQKCY
Sbjct: 61 GHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCY 120
Query: 114 SCGKLGHIQKDCAQVKCYRCGEIGHVAINCSK 145
SCG+ GHIQKDC +VKCYRCGE GHVAINCSK
Sbjct: 121 SCGEFGHIQKDCTKVKCYRCGETGHVAINCSK 152
Score = 35.0 bits (79), Expect = 0.029
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 7 FACGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNCVL 62
++CG GH + C + R G G + S T CY CGESG A+ C +
Sbjct: 120 YSCGEFGHIQKDCTKVKC--YRCGETGHVAINCSKTSEVNCYRCGESGHLARECTI 173
>gi|187608726 zinc finger protein 9 isoform 1 [Homo sapiens]
Length = 179
Score = 213 bits (542), Expect = 6e-56
Identities = 101/154 (65%), Positives = 111/154 (72%), Gaps = 9/154 (5%)
Query: 1 MSSKDFFACGHSGHWARGCPRGGAGGR--RGGGHG-----RGSQCGSTTLSYTCYCCGES 53
MSS + F CG SGHWAR CP GG GR R G G RG Q S++L CY CGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES 60
Query: 54 GRNAKNCVLLGNI--CYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQK 111
G AK+C L ++ CYNCGR GHIAKDCK+PKRER Q CY CG+ GHLARDCD EQK
Sbjct: 61 GHLAKDCDLQEDVEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQK 120
Query: 112 CYSCGKLGHIQKDCAQVKCYRCGEIGHVAINCSK 145
CYSCG+ GHIQKDC +VKCYRCGE GHVAINCSK
Sbjct: 121 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSK 154
Score = 35.0 bits (79), Expect = 0.029
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 7 FACGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNCVL 62
++CG GH + C + R G G + S T CY CGESG A+ C +
Sbjct: 122 YSCGEFGHIQKDCTKVKC--YRCGETGHVAINCSKTSEVNCYRCGESGHLARECTI 175
>gi|187608732 zinc finger protein 9 isoform 2 [Homo sapiens]
Length = 178
Score = 212 bits (539), Expect = 1e-55
Identities = 101/153 (66%), Positives = 110/153 (71%), Gaps = 8/153 (5%)
Query: 1 MSSKDFFACGHSGHWARGCPRGGAGGR--RGGGHG-----RGSQCGSTTLSYTCYCCGES 53
MSS + F CG SGHWAR CP GG GR R G G RG Q S++L CY CGES
Sbjct: 1 MSSNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGES 60
Query: 54 GRNAKNCVLLGN-ICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQKC 112
G AK+C L + CYNCGR GHIAKDCK+PKRER Q CY CG+ GHLARDCD EQKC
Sbjct: 61 GHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKC 120
Query: 113 YSCGKLGHIQKDCAQVKCYRCGEIGHVAINCSK 145
YSCG+ GHIQKDC +VKCYRCGE GHVAINCSK
Sbjct: 121 YSCGEFGHIQKDCTKVKCYRCGETGHVAINCSK 153
Score = 35.0 bits (79), Expect = 0.029
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 7 FACGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNCVL 62
++CG GH + C + R G G + S T CY CGESG A+ C +
Sbjct: 121 YSCGEFGHIQKDCTKVKC--YRCGETGHVAINCSKTSEVNCYRCGESGHLARECTI 174
>gi|110815844 zinc finger, CCHC domain containing 7 [Homo sapiens]
Length = 543
Score = 52.8 bits (125), Expect = 1e-07
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 66 ICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQKCYSCGKLGH--IQK 123
IC NC + GH++K+C P++ RR C+ C R GHL C + C L H + +
Sbjct: 242 ICRNCDKRGHLSKNCPLPRKVRR--CFLCSRRGHLLYSCPAPLCEYCPVPKMLDHSCLFR 299
Query: 124 DCAQVKCYRCGEIGHVAINCSK 145
+C RC +GH C++
Sbjct: 300 HSWDKQCDRCHMLGHYTDACTE 321
Score = 38.1 bits (87), Expect = 0.003
Identities = 30/134 (22%), Positives = 43/134 (32%), Gaps = 42/134 (31%)
Query: 40 STTLSYTCYCCGESGRNAKNCVLLGNI--CYNCGRSGHIAKDCKDP-------------- 83
S + C C + G +KNC L + C+ C R GH+ C P
Sbjct: 236 SANKNIICRNCDKRGHLSKNCPLPRKVRRCFLCSRRGHLLYSCPAPLCEYCPVPKMLDHS 295
Query: 84 ---KRERRQHCYTCGRLGHLARDCDR-------------QKEQK----------CYSCGK 117
+ + C C LGH C K+ K CY C +
Sbjct: 296 CLFRHSWDKQCDRCHMLGHYTDACTEIWRQYHLTTKPGPPKKPKTPSRPSALAYCYHCAQ 355
Query: 118 LGHIQKDCAQVKCY 131
GH +C + + Y
Sbjct: 356 KGHYGHECPEREVY 369
>gi|196259805 zinc finger, CCHC domain containing 9 [Homo sapiens]
Length = 271
Score = 51.6 bits (122), Expect = 3e-07
Identities = 33/99 (33%), Positives = 44/99 (44%), Gaps = 18/99 (18%)
Query: 47 CYCCGESGRNAKNC-VLLGN------ICYNCGRSGHIAKDCK---DPKRERRQH--CYTC 94
C+ C + G +C L N ICY CG + H CK DP C+ C
Sbjct: 130 CFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFVC 189
Query: 95 GRLGHLARDC-DRQK-----EQKCYSCGKLGHIQKDCAQ 127
G +GHL+R C D K C CG + H++KDC +
Sbjct: 190 GEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPE 228
Score = 48.1 bits (113), Expect = 3e-06
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 24/104 (23%)
Query: 66 ICYNCGRSGHIAKDCKDPKRERRQH-----CYTCGRLGHLARDCDRQKE--------QKC 112
+C++C + GH DC P Q CY CG H C + + KC
Sbjct: 129 VCFHCRKPGHGIADC--PAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKC 186
Query: 113 YSCGKLGHIQKDCAQVK---------CYRCGEIGHVAINCSKAR 147
+ CG++GH+ + C C CG + H+ +C +++
Sbjct: 187 FVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPESQ 230
Score = 43.5 bits (101), Expect = 8e-05
Identities = 31/124 (25%), Positives = 44/124 (35%), Gaps = 27/124 (21%)
Query: 7 FACGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNCVL---- 62
F C GH CP G G CY CG + C
Sbjct: 131 FHCRKPGHGIADCPAALENQDMGTG--------------ICYRCGSTEHEITKCKAKVDP 176
Query: 63 -LGNI----CYNCGRSGHIAKDCKDPKRERRQH---CYTCGRLGHLARDC-DRQKEQKCY 113
LG C+ CG GH+++ C D + C CG + HL +DC + Q ++
Sbjct: 177 ALGEFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPESQNSERMV 236
Query: 114 SCGK 117
+ G+
Sbjct: 237 TVGR 240
Score = 41.2 bits (95), Expect = 4e-04
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 28/91 (30%)
Query: 81 KDPKRERRQH-----------CYTCGRLGHLARDCDRQKEQK------CYSCGKLGH-IQ 122
KD +RE R+ C+ C + GH DC E + CY CG H I
Sbjct: 109 KDSRREGRRLKRQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEIT 168
Query: 123 KDCAQV----------KCYRCGEIGHVAINC 143
K A+V KC+ CGE+GH++ +C
Sbjct: 169 KCKAKVDPALGEFPFAKCFVCGEMGHLSRSC 199
>gi|196259803 zinc finger, CCHC domain containing 9 [Homo sapiens]
Length = 271
Score = 51.6 bits (122), Expect = 3e-07
Identities = 33/99 (33%), Positives = 44/99 (44%), Gaps = 18/99 (18%)
Query: 47 CYCCGESGRNAKNC-VLLGN------ICYNCGRSGHIAKDCK---DPKRERRQH--CYTC 94
C+ C + G +C L N ICY CG + H CK DP C+ C
Sbjct: 130 CFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFVC 189
Query: 95 GRLGHLARDC-DRQK-----EQKCYSCGKLGHIQKDCAQ 127
G +GHL+R C D K C CG + H++KDC +
Sbjct: 190 GEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPE 228
Score = 48.1 bits (113), Expect = 3e-06
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 24/104 (23%)
Query: 66 ICYNCGRSGHIAKDCKDPKRERRQH-----CYTCGRLGHLARDCDRQKE--------QKC 112
+C++C + GH DC P Q CY CG H C + + KC
Sbjct: 129 VCFHCRKPGHGIADC--PAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKC 186
Query: 113 YSCGKLGHIQKDCAQVK---------CYRCGEIGHVAINCSKAR 147
+ CG++GH+ + C C CG + H+ +C +++
Sbjct: 187 FVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPESQ 230
Score = 43.5 bits (101), Expect = 8e-05
Identities = 31/124 (25%), Positives = 44/124 (35%), Gaps = 27/124 (21%)
Query: 7 FACGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNCVL---- 62
F C GH CP G G CY CG + C
Sbjct: 131 FHCRKPGHGIADCPAALENQDMGTG--------------ICYRCGSTEHEITKCKAKVDP 176
Query: 63 -LGNI----CYNCGRSGHIAKDCKDPKRERRQH---CYTCGRLGHLARDC-DRQKEQKCY 113
LG C+ CG GH+++ C D + C CG + HL +DC + Q ++
Sbjct: 177 ALGEFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPESQNSERMV 236
Query: 114 SCGK 117
+ G+
Sbjct: 237 TVGR 240
Score = 41.2 bits (95), Expect = 4e-04
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 28/91 (30%)
Query: 81 KDPKRERRQH-----------CYTCGRLGHLARDCDRQKEQK------CYSCGKLGH-IQ 122
KD +RE R+ C+ C + GH DC E + CY CG H I
Sbjct: 109 KDSRREGRRLKRQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEIT 168
Query: 123 KDCAQV----------KCYRCGEIGHVAINC 143
K A+V KC+ CGE+GH++ +C
Sbjct: 169 KCKAKVDPALGEFPFAKCFVCGEMGHLSRSC 199
>gi|14150027 zinc finger, CCHC domain containing 9 [Homo sapiens]
Length = 271
Score = 51.6 bits (122), Expect = 3e-07
Identities = 33/99 (33%), Positives = 44/99 (44%), Gaps = 18/99 (18%)
Query: 47 CYCCGESGRNAKNC-VLLGN------ICYNCGRSGHIAKDCK---DPKRERRQH--CYTC 94
C+ C + G +C L N ICY CG + H CK DP C+ C
Sbjct: 130 CFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFVC 189
Query: 95 GRLGHLARDC-DRQK-----EQKCYSCGKLGHIQKDCAQ 127
G +GHL+R C D K C CG + H++KDC +
Sbjct: 190 GEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPE 228
Score = 48.1 bits (113), Expect = 3e-06
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 24/104 (23%)
Query: 66 ICYNCGRSGHIAKDCKDPKRERRQH-----CYTCGRLGHLARDCDRQKE--------QKC 112
+C++C + GH DC P Q CY CG H C + + KC
Sbjct: 129 VCFHCRKPGHGIADC--PAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKC 186
Query: 113 YSCGKLGHIQKDCAQVK---------CYRCGEIGHVAINCSKAR 147
+ CG++GH+ + C C CG + H+ +C +++
Sbjct: 187 FVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPESQ 230
Score = 43.5 bits (101), Expect = 8e-05
Identities = 31/124 (25%), Positives = 44/124 (35%), Gaps = 27/124 (21%)
Query: 7 FACGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNCVL---- 62
F C GH CP G G CY CG + C
Sbjct: 131 FHCRKPGHGIADCPAALENQDMGTG--------------ICYRCGSTEHEITKCKAKVDP 176
Query: 63 -LGNI----CYNCGRSGHIAKDCKDPKRERRQH---CYTCGRLGHLARDC-DRQKEQKCY 113
LG C+ CG GH+++ C D + C CG + HL +DC + Q ++
Sbjct: 177 ALGEFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPESQNSERMV 236
Query: 114 SCGK 117
+ G+
Sbjct: 237 TVGR 240
Score = 41.2 bits (95), Expect = 4e-04
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 28/91 (30%)
Query: 81 KDPKRERRQH-----------CYTCGRLGHLARDCDRQKEQK------CYSCGKLGH-IQ 122
KD +RE R+ C+ C + GH DC E + CY CG H I
Sbjct: 109 KDSRREGRRLKRQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEIT 168
Query: 123 KDCAQV----------KCYRCGEIGHVAINC 143
K A+V KC+ CGE+GH++ +C
Sbjct: 169 KCKAKVDPALGEFPFAKCFVCGEMGHLSRSC 199
>gi|29648305 zinc finger, CCHC domain containing 3 [Homo sapiens]
Length = 403
Score = 46.2 bits (108), Expect = 1e-05
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Query: 91 CYTCGRLGHLARDCDRQKEQKCYSCGKLGHIQKDCAQ-VKCYRCGEIGHVAINCSKA 146
C+ CG H++ C + +C+ CG+ GH+ C + + C CG+ GH C KA
Sbjct: 335 CFKCGSRTHMSGSCT---QDRCFRCGEEGHLSPYCRKGIVCNLCGKRGHAFAQCPKA 388
Score = 37.7 bits (86), Expect = 0.005
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 7/61 (11%)
Query: 46 TCYCCGESGRNAKNCVLLGNICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCD 105
TC+ CG + +C + C+ CG GH++ C+ + C CG+ GH C
Sbjct: 334 TCFKCGSRTHMSGSCTQ--DRCFRCGEEGHLSPYCR-----KGIVCNLCGKRGHAFAQCP 386
Query: 106 R 106
+
Sbjct: 387 K 387
>gi|13375938 lin-28 homolog [Homo sapiens]
Length = 209
Score = 43.9 bits (102), Expect = 6e-05
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 48 YCCGES----GRNAKNCVLLGNICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARD 103
+C G G++ + G+ CYNCG H AK+CK P + ++ C+ C + H+
Sbjct: 116 FCIGSERRPKGKSMQKRRSKGDRCYNCGGLDHHAKECKLPPQPKK--CHFCQSISHMVAS 173
Query: 104 CDRQKEQKCYSCGKLGHIQKD 124
C + +Q + GK + +++
Sbjct: 174 CPLKAQQGPSAQGKPTYFREE 194
Score = 38.5 bits (88), Expect = 0.003
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 106 RQKEQKCYSCGKLGHIQKDC----AQVKCYRCGEIGHVAINCS-KARPG 149
R K +CY+CG L H K+C KC+ C I H+ +C KA+ G
Sbjct: 133 RSKGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLKAQQG 181
>gi|57863250 zinc finger, CCHC domain containing 11 isoform c [Homo
sapiens]
Length = 1640
Score = 43.5 bits (101), Expect = 8e-05
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 15/81 (18%)
Query: 67 CYNCGRSGHIAKDCKDPKR---------------ERRQHCYTCGRLGHLARDCDRQKEQK 111
C CG+ GH KDC KR E+ R H RD ++ +
Sbjct: 1295 CRVCGKIGHYMKDCPKRKRLKKKDSEEEKEGNEEEKDSRDVLDPRDLHDTRDFRDPRDLR 1354
Query: 112 CYSCGKLGHIQKDCAQVKCYR 132
C+ CG GH++++C +VK R
Sbjct: 1355 CFICGDAGHVRRECPEVKLAR 1375
Score = 28.1 bits (61), Expect = 3.6
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 67 CYNCGRSGHIAKDCKDPKRERRQH 90
C+ CG +GH+ ++C + K R+++
Sbjct: 1355 CFICGDAGHVRRECPEVKLARQRN 1378
>gi|51972214 lin-28 homolog B [Homo sapiens]
Length = 250
Score = 41.6 bits (96), Expect = 3e-04
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 106 RQKEQKCYSCGKLGHIQKDCA----QVKCYRCGEIGHVAINCSKARPGQLLPLRQIPTSS 161
+ K +CY+CG L H K+C+ KC+ C I H+ NC + Q P SS
Sbjct: 123 KPKGDRCYNCGGLDHHAKECSLPPQPKKCHYCQSIMHMVANCPHKN------VAQPPASS 176
Query: 162 QGMSQ 166
QG +
Sbjct: 177 QGRQE 181
Score = 38.1 bits (87), Expect = 0.003
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 64 GNICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDC 104
G+ CYNCG H AK+C P + ++ C+ C + H+ +C
Sbjct: 126 GDRCYNCGGLDHHAKECSLPPQPKK--CHYCQSIMHMVANC 164
>gi|4508001 zinc finger protein 165 [Homo sapiens]
Length = 485
Score = 41.6 bits (96), Expect = 3e-04
Identities = 35/139 (25%), Positives = 50/139 (35%), Gaps = 26/139 (18%)
Query: 44 SYTCYCCGESGRNAKNC-----VLLGNICYNCGRSGHIAKDCKDPKRERRQH-------C 91
++ C CG++ R++ + G CY C G + D R RR H C
Sbjct: 343 THQCNECGKAFRHSSKLARHQRIHTGERCYECNECGKSFAESSDLTRHRRIHTGERPFGC 402
Query: 92 YTCGRL----GHLARDC---DRQKEQKCYSCGKLGHIQKDCAQ-------VKCYRCGEIG 137
CGR HL R R+K +C CGK + + K Y C E G
Sbjct: 403 KECGRAFNLNSHLIRHQRIHTREKPYECSECGKTFRVSSHLIRHFRIHTGEKPYECSECG 462
Query: 138 HVAINCSKARPGQLLPLRQ 156
S Q + +R+
Sbjct: 463 RAFSQSSNLSQHQRIHMRE 481
>gi|157952211 zinc finger protein 250 isoform b [Homo sapiens]
Length = 555
Score = 40.8 bits (94), Expect = 5e-04
Identities = 34/120 (28%), Positives = 47/120 (39%), Gaps = 10/120 (8%)
Query: 34 RGSQCGSTTLSYTCYCCGESGRNAKNCVLLGNICYNCGRSGHIAKDCKDPKRERRQHCYT 93
R Q S ++ T + SG CV G C+ GRS H+ + + E+ C
Sbjct: 170 REVQVLSQSMPLTPHQAVPSGERPYMCVECGK-CF--GRSSHLLQHQRIHTGEKPYVCSV 226
Query: 94 CGR-------LGHLARDCDRQKEQKCYSCGKLGHIQKDCAQVKCYRCGEIGHVAINCSKA 146
CG+ L R +K +C CGK + D AQ GE H + C KA
Sbjct: 227 CGKAFSQSSVLSKHRRIHTGEKPYECNECGKAFRVSSDLAQHHKIHTGEKPHECLECRKA 286
Score = 28.9 bits (63), Expect = 2.1
Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 19/121 (15%)
Query: 45 YTCYCCGESGRNAKNCVLLGNI--------CYNCGRS----GHIAKDCKDPKRERRQHCY 92
Y C CG++ R + + I C C ++ H+ + + ER C
Sbjct: 250 YECNECGKAFRVSSDLAQHHKIHTGEKPHECLECRKAFTQLSHLIQHQRIHTGERPYVCP 309
Query: 93 TCGRLGH---LARDCDR----QKEQKCYSCGKLGHIQKDCAQVKCYRCGEIGHVAINCSK 145
CG+ + + R R +K +C CGK +++ Q + GE + C K
Sbjct: 310 LCGKAFNHSTVLRSHQRVHTGEKPHRCNECGKTFSVKRTLLQHQRIHTGEKPYTCSECGK 369
Query: 146 A 146
A
Sbjct: 370 A 370
Score = 28.1 bits (61), Expect = 3.6
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 14/67 (20%)
Query: 86 ERRQHCYTCGR-------LGHLARDCDRQKEQKCYSCGKL----GHI---QKDCAQVKCY 131
E+ C CG+ L + R +K CY CGK H+ Q+ K Y
Sbjct: 387 EKPYECSECGKTFSHRSTLMNHERIHTEEKPYACYECGKAFVQHSHLIQHQRVHTGEKPY 446
Query: 132 RCGEIGH 138
CGE GH
Sbjct: 447 VCGECGH 453
>gi|45387947 zinc finger protein 250 isoform a [Homo sapiens]
Length = 560
Score = 40.8 bits (94), Expect = 5e-04
Identities = 34/120 (28%), Positives = 47/120 (39%), Gaps = 10/120 (8%)
Query: 34 RGSQCGSTTLSYTCYCCGESGRNAKNCVLLGNICYNCGRSGHIAKDCKDPKRERRQHCYT 93
R Q S ++ T + SG CV G C+ GRS H+ + + E+ C
Sbjct: 175 REVQVLSQSMPLTPHQAVPSGERPYMCVECGK-CF--GRSSHLLQHQRIHTGEKPYVCSV 231
Query: 94 CGR-------LGHLARDCDRQKEQKCYSCGKLGHIQKDCAQVKCYRCGEIGHVAINCSKA 146
CG+ L R +K +C CGK + D AQ GE H + C KA
Sbjct: 232 CGKAFSQSSVLSKHRRIHTGEKPYECNECGKAFRVSSDLAQHHKIHTGEKPHECLECRKA 291
Score = 28.9 bits (63), Expect = 2.1
Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 19/121 (15%)
Query: 45 YTCYCCGESGRNAKNCVLLGNI--------CYNCGRS----GHIAKDCKDPKRERRQHCY 92
Y C CG++ R + + I C C ++ H+ + + ER C
Sbjct: 255 YECNECGKAFRVSSDLAQHHKIHTGEKPHECLECRKAFTQLSHLIQHQRIHTGERPYVCP 314
Query: 93 TCGRLGH---LARDCDR----QKEQKCYSCGKLGHIQKDCAQVKCYRCGEIGHVAINCSK 145
CG+ + + R R +K +C CGK +++ Q + GE + C K
Sbjct: 315 LCGKAFNHSTVLRSHQRVHTGEKPHRCNECGKTFSVKRTLLQHQRIHTGEKPYTCSECGK 374
Query: 146 A 146
A
Sbjct: 375 A 375
Score = 28.1 bits (61), Expect = 3.6
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 14/67 (20%)
Query: 86 ERRQHCYTCGR-------LGHLARDCDRQKEQKCYSCGKL----GHI---QKDCAQVKCY 131
E+ C CG+ L + R +K CY CGK H+ Q+ K Y
Sbjct: 392 EKPYECSECGKTFSHRSTLMNHERIHTEEKPYACYECGKAFVQHSHLIQHQRVHTGEKPY 451
Query: 132 RCGEIGH 138
CGE GH
Sbjct: 452 VCGECGH 458
>gi|57863246 zinc finger, CCHC domain containing 11 isoform b [Homo
sapiens]
Length = 1644
Score = 40.4 bits (93), Expect = 7e-04
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 23/87 (26%)
Query: 67 CYNCGRSGHIAKDCKDPKR---------------------ERRQHCYTCGRLGHLARDCD 105
C CG+ GH KDC PKR E+ R H RD
Sbjct: 1295 CRVCGKIGHYMKDC--PKRKSLLFRLKKKDSEEEKEGNEEEKDSRDVLDPRDLHDTRDFR 1352
Query: 106 RQKEQKCYSCGKLGHIQKDCAQVKCYR 132
++ +C+ CG GH++++C +VK R
Sbjct: 1353 DPRDLRCFICGDAGHVRRECPEVKLAR 1379
Score = 28.1 bits (61), Expect = 3.6
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 67 CYNCGRSGHIAKDCKDPKRERRQH 90
C+ CG +GH+ ++C + K R+++
Sbjct: 1359 CFICGDAGHVRRECPEVKLARQRN 1382
>gi|53292629 keratin associated protein 5-11 [Homo sapiens]
Length = 156
Score = 40.0 bits (92), Expect = 0.001
Identities = 39/139 (28%), Positives = 48/139 (34%), Gaps = 19/139 (13%)
Query: 9 CGHSGHWARGCPRGGAGGRRGG-GHGRGSQCGSTTLSYTCYC--------------CGES 53
CG SG GC GG G GG G G G CGS+ C C CG
Sbjct: 4 CGCSGGCGSGC--GGCGSGSGGCGSGCGG-CGSSCCVPICCCKPVCCCVPACSCSSCGSC 60
Query: 54 GRNAKNCVLLGNICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQKCY 113
G + C G+ CG G +C P C + ++ C Q
Sbjct: 61 GGSKGGCGSCGSSKGGCGSCGCSQSNCCKPCCS-SSGCGSFCCQSSCSKPCCCQSSCCQS 119
Query: 114 SCGKLGHIQKDCAQVKCYR 132
SC K Q C Q C++
Sbjct: 120 SCCKPCCCQSSCCQSSCFK 138
>gi|57863248 zinc finger, CCHC domain containing 11 isoform a [Homo
sapiens]
Length = 1645
Score = 40.0 bits (92), Expect = 0.001
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 24/88 (27%)
Query: 67 CYNCGRSGHIAKDCKDPKR----------------------ERRQHCYTCGRLGHLARDC 104
C CG+ GH KDC PKR E+ R H RD
Sbjct: 1295 CRVCGKIGHYMKDC--PKRKSSLLFRLKKKDSEEEKEGNEEEKDSRDVLDPRDLHDTRDF 1352
Query: 105 DRQKEQKCYSCGKLGHIQKDCAQVKCYR 132
++ +C+ CG GH++++C +VK R
Sbjct: 1353 RDPRDLRCFICGDAGHVRRECPEVKLAR 1380
Score = 28.1 bits (61), Expect = 3.6
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 67 CYNCGRSGHIAKDCKDPKRERRQH 90
C+ CG +GH+ ++C + K R+++
Sbjct: 1360 CFICGDAGHVRRECPEVKLARQRN 1383
>gi|224549000 zinc finger protein 480 [Homo sapiens]
Length = 535
Score = 39.7 bits (91), Expect = 0.001
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 18/89 (20%)
Query: 67 CYNCG----RSGHIAKDCKDPKRERRQHCYTCGRL-------GHLARDCDRQKEQKCYSC 115
C +CG R+ H+A+ C+ E+ C CG++ R R+K +C C
Sbjct: 233 CNSCGKVFSRNSHLAEHCRIHTGEKPYKCNVCGKVFSYNSNFARHQRIHTREKPYECNEC 292
Query: 116 GK-------LGHIQKDCAQVKCYRCGEIG 137
GK L Q+ A+ K Y+C E G
Sbjct: 293 GKVFSNNSYLARHQRIHAEEKPYKCNECG 321
Score = 30.8 bits (68), Expect = 0.56
Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 22/121 (18%)
Query: 48 YCCGESGRNAKNCVLLGNI-----------CYNCGRSGH----IAKDCKDPKRERRQHCY 92
Y C E G+ + L N C CG++ + + + K E+ C
Sbjct: 315 YKCNECGKGFSHKSSLANHWRIYTGEKPYKCDECGKAFYRIALLVRHQKIHTGEKPYKCN 374
Query: 93 TCGRL----GHLA---RDCDRQKEQKCYSCGKLGHIQKDCAQVKCYRCGEIGHVAINCSK 145
CG++ HLA R +K KC CGK+ + + A+ + GE + C K
Sbjct: 375 ECGKVFIQNSHLAQHWRIHTGEKPYKCNECGKVFNQLSNLARHRRIHTGEKPYKCNECGK 434
Query: 146 A 146
A
Sbjct: 435 A 435
Score = 30.4 bits (67), Expect = 0.73
Identities = 25/91 (27%), Positives = 33/91 (36%), Gaps = 16/91 (17%)
Query: 45 YTCYCCGE-----SGRNAKNCVLLGNICYNCGRSGHIAKDCKDPKRERRQH-------CY 92
Y C CG+ SG +A + G Y C G + +R H C
Sbjct: 427 YKCNECGKAFSEYSGLSAHLVIHTGEKPYKCSECGKAFRHKLSLTNHQRIHTGERPYKCN 486
Query: 93 TCG----RLGHLARDCDRQKEQKCYSCGKLG 119
CG R+ HLAR +K Y C + G
Sbjct: 487 ECGKVFNRIAHLARHRKIHTGEKPYKCNECG 517
>gi|72384335 zinc finger protein 311 [Homo sapiens]
Length = 666
Score = 39.7 bits (91), Expect = 0.001
Identities = 32/119 (26%), Positives = 45/119 (37%), Gaps = 26/119 (21%)
Query: 45 YTCYCCGESGRNAKNCVLLGNI--------CYNCGR----SGHIAKDCKDPKRERRQHCY 92
Y C CCG++ + + + G I C CG+ S + K + ER C
Sbjct: 359 YKCNCCGKAFQFKHSLTIHGRIHTGEKPYECEECGKAFSGSSDLTKHIRIHTGERPYECS 418
Query: 93 TCGRLGHLARDCD-------RQKEQKCYSCGKLGHIQKDC-------AQVKCYRCGEIG 137
CGR + D R+K C CGK I+ + + K YRC E G
Sbjct: 419 KCGRAFSRSSDLSKHKRIHTREKHYGCPQCGKDFSIKAELTKHRRIHTEEKRYRCEECG 477
Score = 32.7 bits (73), Expect = 0.15
Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 8/116 (6%)
Query: 32 HGRGSQCGSTTLSYTCYCCGESGRNAK-NCVLLGNICYNCGRSGHIAKDCKDPKRERRQH 90
+ + SQC ++ + C G+N + L+ + + G H+ +C + R Q
Sbjct: 231 NSKHSQCNKVLIAQKLHECARCGKNFSWHSDLILHEQIHSGEKPHVCNECGKAFKTRNQ- 289
Query: 91 CYTCGRLGHLARDCDRQKEQKCYSCGKLGHIQKDCAQVKCYRCGEIGHVAINCSKA 146
+ R+ H +K C CGK + + + K GE H +C KA
Sbjct: 290 -LSMHRIIHTG-----EKPFNCTQCGKAFNSRSALCRHKKTHSGEKPHECRDCGKA 339
Score = 32.0 bits (71), Expect = 0.25
Identities = 30/129 (23%), Positives = 48/129 (37%), Gaps = 9/129 (6%)
Query: 18 GCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNCVLLGNICYNCGRSGHIA 77
GCP+ G + + + Y C CG++ R+ NC + + G +
Sbjct: 444 GCPQCGKDFSIKAELTKHRRIHTEEKRYRCEECGKAFRH--NCKRRAHEREHTGEKPYQC 501
Query: 78 KDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQKCYSCGKLGHIQKDCAQVKCYRCGEIG 137
+DC K + +HC T + H +K KC CGK + + + GE
Sbjct: 502 RDCG--KTFQDKHCLTIHQRIHTG-----EKPYKCLECGKAFSGKSNLTNHRRIHTGEKP 554
Query: 138 HVAINCSKA 146
H C A
Sbjct: 555 HKCEVCGMA 563
>gi|96303826 zinc finger protein 16 [Homo sapiens]
Length = 682
Score = 39.3 bits (90), Expect = 0.002
Identities = 38/147 (25%), Positives = 52/147 (35%), Gaps = 19/147 (12%)
Query: 19 CPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNCVL-----LGNICYNCGRS 73
C G RR + + S Y C CG++ R + N + G + CG
Sbjct: 323 CNECGKAFRRSSNLIQHQRIHSGEKPYVCSECGKAFRRSSNLIKHHRTHTGEKPFECGEC 382
Query: 74 G-------HIAKDCKDPKRERRQHCYTCG----RLGHLA---RDCDRQKEQKCYSCGKLG 119
G H+ K + E+ C CG R+ +L R +K KC CGK
Sbjct: 383 GKAFSQSAHLRKHQRVHTGEKPYECNDCGKPFSRVSNLIKHHRVHTGEKPYKCSDCGKAF 442
Query: 120 HIQKDCAQVKCYRCGEIGHVAINCSKA 146
Q + GE HV C KA
Sbjct: 443 SQSSSLIQHRRIHTGEKPHVCNVCGKA 469
Score = 30.8 bits (68), Expect = 0.56
Identities = 30/124 (24%), Positives = 45/124 (36%), Gaps = 23/124 (18%)
Query: 44 SYTCYCCGESGRNAKNCVL-------LGNICYNCGRSGHIAKDCKDPKRERRQHC----Y 92
S+ C CG++ ++N VL + Y C G + D R + H Y
Sbjct: 236 SFMCDDCGKTF--SQNSVLKNRHRSHMSEKAYQCSECGKAFRGHSDFSRHQSHHSSERPY 293
Query: 93 TCGRLGH-LARDCDRQKEQK---------CYSCGKLGHIQKDCAQVKCYRCGEIGHVAIN 142
C G +++ +K QK C CGK + Q + GE +V
Sbjct: 294 MCNECGKAFSQNSSLKKHQKSHMSEKPYECNECGKAFRRSSNLIQHQRIHSGEKPYVCSE 353
Query: 143 CSKA 146
C KA
Sbjct: 354 CGKA 357
Score = 26.9 bits (58), Expect = 8.0
Identities = 29/119 (24%), Positives = 43/119 (36%), Gaps = 26/119 (21%)
Query: 45 YTCYCCGESGRNAKNCVLLGNI--------CYNCG----RSGHIAKDCKDPKRERRQHCY 92
Y C CG++ ++ + + C+ CG RS ++ + E+ C
Sbjct: 489 YRCSVCGKAFSHSSALIQHQGVHTGDKPYACHECGKTFGRSSNLILHQRVHTGEKPYECT 548
Query: 93 TCGR-------LGHLARDCDRQKEQKCYSCGK-------LGHIQKDCAQVKCYRCGEIG 137
CG+ L R + K +C CGK L H QK K Y C E G
Sbjct: 549 ECGKTFSQSSTLIQHQRIHNGLKPHECNQCGKAFNRSSNLIHHQKVHTGEKPYTCVECG 607
>gi|38045954 zinc finger protein 16 [Homo sapiens]
Length = 682
Score = 39.3 bits (90), Expect = 0.002
Identities = 38/147 (25%), Positives = 52/147 (35%), Gaps = 19/147 (12%)
Query: 19 CPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNCVL-----LGNICYNCGRS 73
C G RR + + S Y C CG++ R + N + G + CG
Sbjct: 323 CNECGKAFRRSSNLIQHQRIHSGEKPYVCSECGKAFRRSSNLIKHHRTHTGEKPFECGEC 382
Query: 74 G-------HIAKDCKDPKRERRQHCYTCG----RLGHLA---RDCDRQKEQKCYSCGKLG 119
G H+ K + E+ C CG R+ +L R +K KC CGK
Sbjct: 383 GKAFSQSAHLRKHQRVHTGEKPYECNDCGKPFSRVSNLIKHHRVHTGEKPYKCSDCGKAF 442
Query: 120 HIQKDCAQVKCYRCGEIGHVAINCSKA 146
Q + GE HV C KA
Sbjct: 443 SQSSSLIQHRRIHTGEKPHVCNVCGKA 469
Score = 30.8 bits (68), Expect = 0.56
Identities = 30/124 (24%), Positives = 45/124 (36%), Gaps = 23/124 (18%)
Query: 44 SYTCYCCGESGRNAKNCVL-------LGNICYNCGRSGHIAKDCKDPKRERRQHC----Y 92
S+ C CG++ ++N VL + Y C G + D R + H Y
Sbjct: 236 SFMCDDCGKTF--SQNSVLKNRHRSHMSEKAYQCSECGKAFRGHSDFSRHQSHHSSERPY 293
Query: 93 TCGRLGH-LARDCDRQKEQK---------CYSCGKLGHIQKDCAQVKCYRCGEIGHVAIN 142
C G +++ +K QK C CGK + Q + GE +V
Sbjct: 294 MCNECGKAFSQNSSLKKHQKSHMSEKPYECNECGKAFRRSSNLIQHQRIHSGEKPYVCSE 353
Query: 143 CSKA 146
C KA
Sbjct: 354 CGKA 357
Score = 26.9 bits (58), Expect = 8.0
Identities = 29/119 (24%), Positives = 43/119 (36%), Gaps = 26/119 (21%)
Query: 45 YTCYCCGESGRNAKNCVLLGNI--------CYNCG----RSGHIAKDCKDPKRERRQHCY 92
Y C CG++ ++ + + C+ CG RS ++ + E+ C
Sbjct: 489 YRCSVCGKAFSHSSALIQHQGVHTGDKPYACHECGKTFGRSSNLILHQRVHTGEKPYECT 548
Query: 93 TCGR-------LGHLARDCDRQKEQKCYSCGK-------LGHIQKDCAQVKCYRCGEIG 137
CG+ L R + K +C CGK L H QK K Y C E G
Sbjct: 549 ECGKTFSQSSTLIQHQRIHNGLKPHECNQCGKAFNRSSNLIHHQKVHTGEKPYTCVECG 607
>gi|239753095 PREDICTED: similar to hCG1725380 [Homo sapiens]
Length = 583
Score = 38.9 bits (89), Expect = 0.002
Identities = 37/160 (23%), Positives = 54/160 (33%), Gaps = 26/160 (16%)
Query: 11 HSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGE-----SGRNAKNCVLLGN 65
H+G C G H + + + + C CG+ S + G
Sbjct: 414 HTGEKLYKCEECGKAFNHSSNHAKHKKIHTGQKPHKCEECGKAFNWFSYLTLHKRIHTGE 473
Query: 66 ICYNCGRSGHIAKDCKDPKRERRQH-------CYTCG----RLGHLA---RDCDRQKEQK 111
Y C G C + + +R H C CG R HL R +K K
Sbjct: 474 KPYKCDECGKAFNQCSNLTKHKRIHTGEKPYKCEECGKAFNRCSHLTEHKRIHTGEKPYK 533
Query: 112 CYSCGK-------LGHIQKDCAQVKCYRCGEIGHVAINCS 144
C CGK L + ++ + KCY+ E G +CS
Sbjct: 534 CEECGKVFISCSSLSNHKRIHTREKCYKSEECGKTFNHCS 573
Score = 29.3 bits (64), Expect = 1.6
Identities = 26/110 (23%), Positives = 39/110 (35%), Gaps = 23/110 (20%)
Query: 44 SYTCYCCGESGRNAKNCVLLGNICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARD 103
SY C CG++ R+ +C L +N E+ C CG++
Sbjct: 363 SYKCKQCGKAFRHC-SCFLEHETIHN---------------EEKHYKCKECGKVFKSFTS 406
Query: 104 CDR-------QKEQKCYSCGKLGHIQKDCAQVKCYRCGEIGHVAINCSKA 146
+K KC CGK + + A+ K G+ H C KA
Sbjct: 407 LSNHIIIHTGEKLYKCEECGKAFNHSSNHAKHKKIHTGQKPHKCEECGKA 456
Score = 28.1 bits (61), Expect = 3.6
Identities = 31/121 (25%), Positives = 43/121 (35%), Gaps = 22/121 (18%)
Query: 48 YCCGESGRNAKNCVLLGNI-----------CYNCGR----SGHIAKDCKDPKRERRQHCY 92
Y C E G+ K+ L N C CG+ S + AK K ++ C
Sbjct: 392 YKCKECGKVFKSFTSLSNHIIIHTGEKLYKCEECGKAFNHSSNHAKHKKIHTGQKPHKCE 451
Query: 93 TCGR-------LGHLARDCDRQKEQKCYSCGKLGHIQKDCAQVKCYRCGEIGHVAINCSK 145
CG+ L R +K KC CGK + + + K GE + C K
Sbjct: 452 ECGKAFNWFSYLTLHKRIHTGEKPYKCDECGKAFNQCSNLTKHKRIHTGEKPYKCEECGK 511
Query: 146 A 146
A
Sbjct: 512 A 512
>gi|122891874 keratin associated protein 5-5 [Homo sapiens]
Length = 237
Score = 38.9 bits (89), Expect = 0.002
Identities = 41/133 (30%), Positives = 46/133 (34%), Gaps = 20/133 (15%)
Query: 9 CGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNCVLLGNICY 68
CG SG GC GGR G G GS CG CG G C G+ C
Sbjct: 4 CGCSGGCGSGC-----GGRGSGCGGCGSGCGGCGSG-----CGGCGSGCGGCGGCGSGCA 53
Query: 69 NCGRSGH---IAKDCKDPK--RERRQHCYTCGRLGHLARDCDRQKEQKCYSCGKLGHIQK 123
CG G + C P C +CG+ G C K + C SCG
Sbjct: 54 GCGGCGSGCCVPVCCCKPMCCCVPACSCSSCGKGG--CGSCGGSK-RGCVSCGVSKGACG 110
Query: 124 DCAQVK--CYRCG 134
C K C CG
Sbjct: 111 SCGGSKGGCGSCG 123
Score = 28.5 bits (62), Expect = 2.8
Identities = 30/122 (24%), Positives = 35/122 (28%), Gaps = 17/122 (13%)
Query: 9 CGHSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGESGRNAKNCVLLGNICY 68
CG G RGC G G G GS+ G CG G + C G
Sbjct: 89 CGSCGGSKRGCVSCGVSKGACGSCG-GSKGG----------CGSCGGSKGGCGSCGGSKG 137
Query: 69 NCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQKCYSCGKLGHIQKDCAQV 128
CG G C + C C C + K Y C Q C +
Sbjct: 138 GCGSCGGSKGGCGSYGCSQSSCCKPCCCSSGCGSSCCQSSCCKPYCC------QSSCCKP 191
Query: 129 KC 130
C
Sbjct: 192 YC 193
>gi|239747658 PREDICTED: similar to hCG1725380 [Homo sapiens]
Length = 583
Score = 38.5 bits (88), Expect = 0.003
Identities = 37/160 (23%), Positives = 54/160 (33%), Gaps = 26/160 (16%)
Query: 11 HSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGE-----SGRNAKNCVLLGN 65
H+G C G H + + + + C CG+ S + G
Sbjct: 414 HTGKKLYKCEECGKAFNHSSNHAKHKKIHTGQKPHKCEECGKAFNWFSYLTLHKRIHTGE 473
Query: 66 ICYNCGRSGHIAKDCKDPKRERRQH-------CYTCG----RLGHLA---RDCDRQKEQK 111
Y C G C + + +R H C CG R HL R +K K
Sbjct: 474 KPYKCDECGKAFNQCSNLTKHKRIHTGEKPYKCEECGKAFNRCSHLTEHKRIHTGEKPYK 533
Query: 112 CYSCGK-------LGHIQKDCAQVKCYRCGEIGHVAINCS 144
C CGK L + ++ + KCY+ E G +CS
Sbjct: 534 CEECGKVFISCSSLSNHKRIHTREKCYKSEECGKTFNHCS 573
Score = 29.3 bits (64), Expect = 1.6
Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 25/111 (22%)
Query: 44 SYTCYCCGESGRNAKNCVLLGNICYNCGRSGHIAKDCKDPKRERRQHCYTCGRL------ 97
SY C CG++ R+ +C L +N E+ C CG++
Sbjct: 363 SYKCKQCGKAFRHC-SCFLEHETIHN---------------EEKHYKCKECGKVFKSFTS 406
Query: 98 --GHLARDCDRQKEQKCYSCGKLGHIQKDCAQVKCYRCGEIGHVAINCSKA 146
H+ + K KC CGK + + A+ K G+ H C KA
Sbjct: 407 LSNHIIIHTGK-KLYKCEECGKAFNHSSNHAKHKKIHTGQKPHKCEECGKA 456
Score = 28.1 bits (61), Expect = 3.6
Identities = 31/121 (25%), Positives = 43/121 (35%), Gaps = 22/121 (18%)
Query: 48 YCCGESGRNAKNCVLLGNI-----------CYNCGR----SGHIAKDCKDPKRERRQHCY 92
Y C E G+ K+ L N C CG+ S + AK K ++ C
Sbjct: 392 YKCKECGKVFKSFTSLSNHIIIHTGKKLYKCEECGKAFNHSSNHAKHKKIHTGQKPHKCE 451
Query: 93 TCGR-------LGHLARDCDRQKEQKCYSCGKLGHIQKDCAQVKCYRCGEIGHVAINCSK 145
CG+ L R +K KC CGK + + + K GE + C K
Sbjct: 452 ECGKAFNWFSYLTLHKRIHTGEKPYKCDECGKAFNQCSNLTKHKRIHTGEKPYKCEECGK 511
Query: 146 A 146
A
Sbjct: 512 A 512
>gi|239741529 PREDICTED: similar to hCG1725380 [Homo sapiens]
Length = 583
Score = 38.5 bits (88), Expect = 0.003
Identities = 37/160 (23%), Positives = 54/160 (33%), Gaps = 26/160 (16%)
Query: 11 HSGHWARGCPRGGAGGRRGGGHGRGSQCGSTTLSYTCYCCGE-----SGRNAKNCVLLGN 65
H+G C G H + + + + C CG+ S + G
Sbjct: 414 HTGKKLYKCEECGKAFNHSSNHAKHKKIHTGQKPHKCEECGKAFNWFSYLTLHKRIHTGE 473
Query: 66 ICYNCGRSGHIAKDCKDPKRERRQH-------CYTCG----RLGHLA---RDCDRQKEQK 111
Y C G C + + +R H C CG R HL R +K K
Sbjct: 474 KPYKCDECGKAFNQCSNLTKHKRIHTGEKPYKCEECGKAFNRCSHLTEHKRIHTGEKPYK 533
Query: 112 CYSCGK-------LGHIQKDCAQVKCYRCGEIGHVAINCS 144
C CGK L + ++ + KCY+ E G +CS
Sbjct: 534 CEECGKVFISCSSLSNHKRIHTREKCYKSEECGKTFNHCS 573
Score = 29.3 bits (64), Expect = 1.6
Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 25/111 (22%)
Query: 44 SYTCYCCGESGRNAKNCVLLGNICYNCGRSGHIAKDCKDPKRERRQHCYTCGRL------ 97
SY C CG++ R+ +C L +N E+ C CG++
Sbjct: 363 SYKCKQCGKAFRHC-SCFLEHETIHN---------------EEKHYKCKECGKVFKSFTS 406
Query: 98 --GHLARDCDRQKEQKCYSCGKLGHIQKDCAQVKCYRCGEIGHVAINCSKA 146
H+ + K KC CGK + + A+ K G+ H C KA
Sbjct: 407 LSNHIIIHTGK-KLYKCEECGKAFNHSSNHAKHKKIHTGQKPHKCEECGKA 456
Score = 28.1 bits (61), Expect = 3.6
Identities = 31/121 (25%), Positives = 43/121 (35%), Gaps = 22/121 (18%)
Query: 48 YCCGESGRNAKNCVLLGNI-----------CYNCGR----SGHIAKDCKDPKRERRQHCY 92
Y C E G+ K+ L N C CG+ S + AK K ++ C
Sbjct: 392 YKCKECGKVFKSFTSLSNHIIIHTGKKLYKCEECGKAFNHSSNHAKHKKIHTGQKPHKCE 451
Query: 93 TCGR-------LGHLARDCDRQKEQKCYSCGKLGHIQKDCAQVKCYRCGEIGHVAINCSK 145
CG+ L R +K KC CGK + + + K GE + C K
Sbjct: 452 ECGKAFNWFSYLTLHKRIHTGEKPYKCDECGKAFNQCSNLTKHKRIHTGEKPYKCEECGK 511
Query: 146 A 146
A
Sbjct: 512 A 512
>gi|189571667 zinc finger protein 696 [Homo sapiens]
Length = 374
Score = 38.5 bits (88), Expect = 0.003
Identities = 40/148 (27%), Positives = 55/148 (37%), Gaps = 22/148 (14%)
Query: 10 GHSGHWARGCPRGGAGGRRGGG-HGRGSQCGSTTLSYTCYCCGESGRNAKNCVLLGNICY 68
G SG + P G G GG GR CG+ S+ C R+ + C
Sbjct: 98 GQSGLESDVPPNAGPGAEGGGSWKGRPFPCGACGRSFKCSSDAAKHRSIHSGEKPYE-CS 156
Query: 69 NCGR----SGHIAKDCKDPKRERRQHCYTCGR--------LGHLARDCDRQKEQKCYSCG 116
+CG+ S H+ + + ER C CG+ L H R +K C CG
Sbjct: 157 DCGKAFIHSSHVVRHQRAHSGERPYACAECGKAFGQSFNLLRH-QRVHTGEKPYACADCG 215
Query: 117 KLGHIQKDCAQ-------VKCYRCGEIG 137
K + D A+ + Y CGE G
Sbjct: 216 KAFGQRSDAAKHRRTHTGERLYACGECG 243
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.139 0.485
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,145,529
Number of Sequences: 37866
Number of extensions: 445322
Number of successful extensions: 5817
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 386
Number of HSP's that attempted gapping in prelim test: 3543
Number of HSP's gapped (non-prelim): 2050
length of query: 166
length of database: 18,247,518
effective HSP length: 95
effective length of query: 71
effective length of database: 14,650,248
effective search space: 1040167608
effective search space used: 1040167608
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.