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Search of human proteins with 42542396
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|42542396 leucine rich repeat containing 23 isoform a [Homo
sapiens]
(343 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|206725447 leucine rich repeat containing 23 isoform a [Homo s... 684 0.0
gi|42542396 leucine rich repeat containing 23 isoform a [Homo sa... 684 0.0
gi|5901898 leucine rich repeat containing 23 isoform b [Homo sap... 508 e-144
gi|21389483 leucine-rich repeats and guanylate kinase domain con... 142 6e-34
gi|55743114 leucine rich repeat containing 49 [Homo sapiens] 93 4e-19
gi|4506013 protein phosphatase 1, regulatory subunit 7 [Homo sap... 87 2e-17
gi|87298937 centrosomal protein 110kDa [Homo sapiens] 80 3e-15
gi|239752518 PREDICTED: similar to leucine rich repeat containin... 77 2e-14
gi|194272228 leucine rich repeat containing 48 isoform b [Homo s... 67 2e-11
gi|194272226 leucine rich repeat containing 48 isoform b [Homo s... 67 2e-11
gi|194272224 leucine rich repeat containing 48 isoform a [Homo s... 67 2e-11
gi|194272222 leucine rich repeat containing 48 isoform a [Homo s... 67 2e-11
gi|117414162 sodium channel associated protein 2 isoform a [Homo... 66 4e-11
gi|4826651 hypothetical protein LOC755 [Homo sapiens] 63 4e-10
gi|31621309 leucine rich repeat containing 6 [Homo sapiens] 62 7e-10
gi|66472382 nischarin [Homo sapiens] 60 3e-09
gi|50593002 small nuclear ribonucleoprotein polypeptide A' [Homo... 59 5e-09
gi|153792305 leucine rich repeat containing 58 [Homo sapiens] 59 5e-09
gi|21687175 leucine rich transmembrane and 0-methyltransferase d... 57 2e-08
gi|164607156 axonemal dynein light chain 1 [Homo sapiens] 57 2e-08
gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 fami... 57 3e-08
gi|4505047 lumican precursor [Homo sapiens] 56 5e-08
gi|16904383 leucine rich repeat containing 7 [Homo sapiens] 56 5e-08
gi|223718151 leucine rich transmembrane and 0-methyltransferase ... 55 9e-08
gi|238908508 leucine-rich repeat and death domain-containing pro... 55 1e-07
gi|118442828 beta-tubulin cofactor E [Homo sapiens] 55 1e-07
gi|4507375 beta-tubulin cofactor E [Homo sapiens] 55 1e-07
gi|210147571 acidic (leucine-rich) nuclear phosphoprotein 32 fam... 55 1e-07
gi|5453880 acidic (leucine-rich) nuclear phosphoprotein 32 famil... 54 2e-07
gi|5454088 acidic (leucine-rich) nuclear phosphoprotein 32 famil... 54 2e-07
>gi|206725447 leucine rich repeat containing 23 isoform a [Homo
sapiens]
Length = 343
Score = 684 bits (1765), Expect = 0.0
Identities = 343/343 (100%), Positives = 343/343 (100%)
Query: 1 MSDEDDLEDSEPDQDDSEKEEDEKETEEGEDYRKEGEEFPEEWLPTPLTEDMMKEGLSLL 60
MSDEDDLEDSEPDQDDSEKEEDEKETEEGEDYRKEGEEFPEEWLPTPLTEDMMKEGLSLL
Sbjct: 1 MSDEDDLEDSEPDQDDSEKEEDEKETEEGEDYRKEGEEFPEEWLPTPLTEDMMKEGLSLL 60
Query: 61 CKTGNGLAHAYVKLEVKERDLTDIYLLRSYIHLRYVDISENHLTDLSPLNYLTHLLWLKA 120
CKTGNGLAHAYVKLEVKERDLTDIYLLRSYIHLRYVDISENHLTDLSPLNYLTHLLWLKA
Sbjct: 61 CKTGNGLAHAYVKLEVKERDLTDIYLLRSYIHLRYVDISENHLTDLSPLNYLTHLLWLKA 120
Query: 121 DGNRLRSAQMNELPYLQIASFAYNQITDTEGISHPRLETLNLKGNSIHMVTGLDPEKLIS 180
DGNRLRSAQMNELPYLQIASFAYNQITDTEGISHPRLETLNLKGNSIHMVTGLDPEKLIS
Sbjct: 121 DGNRLRSAQMNELPYLQIASFAYNQITDTEGISHPRLETLNLKGNSIHMVTGLDPEKLIS 180
Query: 181 LHTVELRGNQLESTLGINLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGF 240
LHTVELRGNQLESTLGINLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGF
Sbjct: 181 LHTVELRGNQLESTLGINLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGF 240
Query: 241 SREMKSLQYLNLRGNMVANLGELAKLRDLPKLRALVLLDNPCTDETSYRQEALVQMPYLE 300
SREMKSLQYLNLRGNMVANLGELAKLRDLPKLRALVLLDNPCTDETSYRQEALVQMPYLE
Sbjct: 241 SREMKSLQYLNLRGNMVANLGELAKLRDLPKLRALVLLDNPCTDETSYRQEALVQMPYLE 300
Query: 301 RLDKEFYEEEERAEADVIRQRLKEEKEQEPEPQRDLEPEQSLI 343
RLDKEFYEEEERAEADVIRQRLKEEKEQEPEPQRDLEPEQSLI
Sbjct: 301 RLDKEFYEEEERAEADVIRQRLKEEKEQEPEPQRDLEPEQSLI 343
>gi|42542396 leucine rich repeat containing 23 isoform a [Homo
sapiens]
Length = 343
Score = 684 bits (1765), Expect = 0.0
Identities = 343/343 (100%), Positives = 343/343 (100%)
Query: 1 MSDEDDLEDSEPDQDDSEKEEDEKETEEGEDYRKEGEEFPEEWLPTPLTEDMMKEGLSLL 60
MSDEDDLEDSEPDQDDSEKEEDEKETEEGEDYRKEGEEFPEEWLPTPLTEDMMKEGLSLL
Sbjct: 1 MSDEDDLEDSEPDQDDSEKEEDEKETEEGEDYRKEGEEFPEEWLPTPLTEDMMKEGLSLL 60
Query: 61 CKTGNGLAHAYVKLEVKERDLTDIYLLRSYIHLRYVDISENHLTDLSPLNYLTHLLWLKA 120
CKTGNGLAHAYVKLEVKERDLTDIYLLRSYIHLRYVDISENHLTDLSPLNYLTHLLWLKA
Sbjct: 61 CKTGNGLAHAYVKLEVKERDLTDIYLLRSYIHLRYVDISENHLTDLSPLNYLTHLLWLKA 120
Query: 121 DGNRLRSAQMNELPYLQIASFAYNQITDTEGISHPRLETLNLKGNSIHMVTGLDPEKLIS 180
DGNRLRSAQMNELPYLQIASFAYNQITDTEGISHPRLETLNLKGNSIHMVTGLDPEKLIS
Sbjct: 121 DGNRLRSAQMNELPYLQIASFAYNQITDTEGISHPRLETLNLKGNSIHMVTGLDPEKLIS 180
Query: 181 LHTVELRGNQLESTLGINLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGF 240
LHTVELRGNQLESTLGINLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGF
Sbjct: 181 LHTVELRGNQLESTLGINLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGF 240
Query: 241 SREMKSLQYLNLRGNMVANLGELAKLRDLPKLRALVLLDNPCTDETSYRQEALVQMPYLE 300
SREMKSLQYLNLRGNMVANLGELAKLRDLPKLRALVLLDNPCTDETSYRQEALVQMPYLE
Sbjct: 241 SREMKSLQYLNLRGNMVANLGELAKLRDLPKLRALVLLDNPCTDETSYRQEALVQMPYLE 300
Query: 301 RLDKEFYEEEERAEADVIRQRLKEEKEQEPEPQRDLEPEQSLI 343
RLDKEFYEEEERAEADVIRQRLKEEKEQEPEPQRDLEPEQSLI
Sbjct: 301 RLDKEFYEEEERAEADVIRQRLKEEKEQEPEPQRDLEPEQSLI 343
>gi|5901898 leucine rich repeat containing 23 isoform b [Homo
sapiens]
Length = 312
Score = 508 bits (1309), Expect = e-144
Identities = 253/253 (100%), Positives = 253/253 (100%)
Query: 1 MSDEDDLEDSEPDQDDSEKEEDEKETEEGEDYRKEGEEFPEEWLPTPLTEDMMKEGLSLL 60
MSDEDDLEDSEPDQDDSEKEEDEKETEEGEDYRKEGEEFPEEWLPTPLTEDMMKEGLSLL
Sbjct: 1 MSDEDDLEDSEPDQDDSEKEEDEKETEEGEDYRKEGEEFPEEWLPTPLTEDMMKEGLSLL 60
Query: 61 CKTGNGLAHAYVKLEVKERDLTDIYLLRSYIHLRYVDISENHLTDLSPLNYLTHLLWLKA 120
CKTGNGLAHAYVKLEVKERDLTDIYLLRSYIHLRYVDISENHLTDLSPLNYLTHLLWLKA
Sbjct: 61 CKTGNGLAHAYVKLEVKERDLTDIYLLRSYIHLRYVDISENHLTDLSPLNYLTHLLWLKA 120
Query: 121 DGNRLRSAQMNELPYLQIASFAYNQITDTEGISHPRLETLNLKGNSIHMVTGLDPEKLIS 180
DGNRLRSAQMNELPYLQIASFAYNQITDTEGISHPRLETLNLKGNSIHMVTGLDPEKLIS
Sbjct: 121 DGNRLRSAQMNELPYLQIASFAYNQITDTEGISHPRLETLNLKGNSIHMVTGLDPEKLIS 180
Query: 181 LHTVELRGNQLESTLGINLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGF 240
LHTVELRGNQLESTLGINLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGF
Sbjct: 181 LHTVELRGNQLESTLGINLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGF 240
Query: 241 SREMKSLQYLNLR 253
SREMKSLQYLNLR
Sbjct: 241 SREMKSLQYLNLR 253
>gi|21389483 leucine-rich repeats and guanylate kinase domain
containing [Homo sapiens]
Length = 825
Score = 142 bits (357), Expect = 6e-34
Identities = 99/303 (32%), Positives = 163/303 (53%), Gaps = 6/303 (1%)
Query: 16 DSEKEEDEKETEEGEDYRKEGEEFP-EEWLPTPLTEDMMKEGLSLLCKTGNGLAHAYVKL 74
DS+ +ED+ E E G + E E EE L E+ + + L L ++G+G Y+ L
Sbjct: 73 DSDGDEDQGEGEAGSEESSESEMLNLEEEFDGVLREEAVAKALHHLGRSGSGTEQVYLNL 132
Query: 75 EVKERDLTDIYLLRSYIHLRYVDISENHLTDLSPLNYLTHLLWLKADGNRLRSAQMNELP 134
+ +L D+ +L Y+HL+ +D+S N + DLS ++ + +LL L A N L + + P
Sbjct: 133 TLSGCNLIDVSILCGYVHLQKLDLSANKIEDLSCVSCMPYLLELNASQNNLTTFFNFKPP 192
Query: 135 -YLQIASFAYNQITDTEGIS-HPRLETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLE 192
L+ A F++NQI++ +S + L L L GN I ++GL E +L + L N++
Sbjct: 193 KNLKKADFSHNQISEICDLSAYHALTKLILDGNEIEEISGL--EMCNNLIHLSLANNKIT 250
Query: 193 STLGINLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGFSREMKSLQYLNL 252
+ G+N +K L L+ N ++ + GLEDL L L L NQI +L G L+ +NL
Sbjct: 251 TINGLNKLPIKILCLSNNQIEMITGLEDLKALQNLDLSHNQISSLQGLENH-DLLEVINL 309
Query: 253 RGNMVANLGELAKLRDLPKLRALVLLDNPCTDETSYRQEALVQMPYLERLDKEFYEEEER 312
N +A L E+ +++LP LR L LL+NP +++ Y + + L LD++ + EE+
Sbjct: 310 EDNKIAELREIEYIKNLPILRVLNLLENPIQEKSEYWFFVIFMLLRLTELDQKKIKVEEK 369
Query: 313 AEA 315
A
Sbjct: 370 VSA 372
>gi|55743114 leucine rich repeat containing 49 [Homo sapiens]
Length = 686
Score = 92.8 bits (229), Expect = 4e-19
Identities = 81/272 (29%), Positives = 129/272 (47%), Gaps = 27/272 (9%)
Query: 73 KLEVKERDLTDIYLLRSYIHLRYVDISENHLTDLSPLNYLTHLLWLKADGNRLRSAQMNE 132
+L ++ + LT ++ HLR ++ N +T + ++ L L+ L
Sbjct: 94 RLSLERQKLTVCPIINGEDHLRLLNFQHNFITRIQNISNLQKLISL-------------- 139
Query: 133 LPYLQIASFAYNQITDTEGISHPR-LETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQL 191
NQI + G+S R L L L N I ++ L E L SL ++L GNQ+
Sbjct: 140 -------DLYDNQIEEISGLSTLRCLRVLLLGKNRIKKISNL--ENLKSLDVLDLHGNQI 190
Query: 192 ESTLGIN-LPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGFSREMKSLQYL 250
IN L +L+ L LA+N L V+ L L +LT L+LR NQI + + LQ+L
Sbjct: 191 TKIENINHLCELRVLNLARNFLSHVDNLNGLDSLTELNLRHNQITFVRDVDN-LPCLQHL 249
Query: 251 NLRGNMVANLGELAKLRDLPKLRALVLLDNPCTDETSYRQEALVQMPYLERLDKEFYEEE 310
L N +++ ++ L D L + NP E+ Y+ L M L +LD + EE
Sbjct: 250 FLSFNNISSFDSVSCLADSSSLSDITFDGNPIAQESWYKHTVLQNMMQLRQLDMKRITEE 309
Query: 311 ERAEADVIRQRLKEEKEQEPEPQRDLEPEQSL 342
ER A V+ ++ +EEK++E Q L+ ++ L
Sbjct: 310 ERRMASVLAKK-EEEKKRESHKQSLLKEKKRL 340
>gi|4506013 protein phosphatase 1, regulatory subunit 7 [Homo
sapiens]
Length = 360
Score = 87.4 bits (215), Expect = 2e-17
Identities = 88/340 (25%), Positives = 151/340 (44%), Gaps = 41/340 (12%)
Query: 2 SDEDDLEDSEPDQDDSEKEEDEKETEEGEDYRKEGEEFPEEWLPTPLTEDMMK------- 54
S+E E+ + + E+ ++GE+ GEE PEE P+ + +
Sbjct: 24 SEESGDEEGKKHSSGIVADLSEQSLKDGEE---RGEEDPEEEHELPVDMETINLDRDAED 80
Query: 55 -----------EGLSLLCKTGN-----GLAHAYVKLE----VKERDLTD-----IYLLRS 89
EG +L K L LE ++E DL D I L +
Sbjct: 81 VDLNHYRIGKIEGFEVLKKVKTLCLRQNLIKCIENLEELQSLRELDLYDNQIKKIENLEA 140
Query: 90 YIHLRYVDISENHLTDLSPLNYLTHLLWLKADGNRLRSAQ-MNELPYLQIASFAYNQITD 148
L +DIS N L ++ ++ LT L L N++ + ++ L LQ+ N+I
Sbjct: 141 LTELEILDISFNLLRNIEGVDKLTRLKKLFLVNNKISKIENLSNLHQLQMLELGSNRIRA 200
Query: 149 TEGISH-PRLETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLESTLGI-NLPKLKNLY 206
E I LE+L L N I + LD L +L + ++ N+L G+ NL L+ LY
Sbjct: 201 IENIDTLTNLESLFLGKNKITKLQNLDA--LTNLTVLSMQSNRLTKIEGLQNLVNLRELY 258
Query: 207 LAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGFSREMKSLQYLNLRGNMVANLGELAKL 266
L+ N ++ +EGLE+ + LT L + N+I + S + LQ + N++ + +L +L
Sbjct: 259 LSHNGIEVIEGLENNNKLTMLDIASNRIKKIENIS-HLTELQEFWMNDNLLESWSDLDEL 317
Query: 267 RDLPKLRALVLLDNPCTDETSYRQEALVQMPYLERLDKEF 306
+ L + L NP + YR++ ++ +P + ++D F
Sbjct: 318 KGARSLETVYLERNPLQKDPQYRRKVMLALPSVRQIDATF 357
>gi|87298937 centrosomal protein 110kDa [Homo sapiens]
Length = 2325
Score = 80.1 bits (196), Expect = 3e-15
Identities = 54/164 (32%), Positives = 95/164 (57%), Gaps = 7/164 (4%)
Query: 176 EKLISLHTVELRGNQLESTLGIN-LPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQI 234
EK + L + L N + ++ L KL+ L L+ N + K+EG+E++ NL L+L N+I
Sbjct: 122 EKCVKLEVLNLSYNLIGKIEKLDKLLKLRELNLSYNKISKIEGIENMCNLQKLNLAGNEI 181
Query: 235 DTLSGF-SREMKSLQYLNLRGNMVANLGELAKLRDLPKLRALVLLDNPCTDETSYRQEAL 293
+ + + +++KSL+ LNL+GN +++L +++KL+ L L +L+L++NP Y Q +
Sbjct: 182 EHIPVWLGKKLKSLRVLNLKGNKISSLQDISKLKPLQDLISLILVENPVVTLPHYLQFTI 241
Query: 294 VQMPYLERLDKEFYEEEERAEADVIRQRLKEEKEQEPEPQRDLE 337
+ LE L+ + ++R EA R L+E + E RDLE
Sbjct: 242 FHLRSLESLEGQPVTTQDRQEA-FERFSLEEVERLE----RDLE 280
Score = 47.0 bits (110), Expect = 2e-05
Identities = 60/223 (26%), Positives = 98/223 (43%), Gaps = 27/223 (12%)
Query: 129 QMNELPYLQIASFAYNQITDTEGISHP-RLETLNLKGNSIHMVTGLDPEKLISLHTVELR 187
++++L L+ + +YN+I+ EGI + L+ LNL GN I + +KL SL + L+
Sbjct: 142 KLDKLLKLRELNLSYNKISKIEGIENMCNLQKLNLAGNEIEHIPVWLGKKLKSLRVLNLK 201
Query: 188 GNQLESTLGIN----LPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGFSRE 243
GN++ S I+ L L +L L +N V L T HLR +++L G
Sbjct: 202 GNKISSLQDISKLKPLQDLISLILVEN---PVVTLPHYLQFTIFHLR--SLESLEGQPVT 256
Query: 244 MKSLQYLNLRGNMVANLGELAKL-RDLPK------------LRALVLLDNPCTDETSYRQ 290
+ Q R +L E+ +L RDL K R L + N S ++
Sbjct: 257 TQDRQEAFER----FSLEEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDKLNKSLKE 312
Query: 291 EALVQMPYLERLDKEFYEEEERAEADVIRQRLKEEKEQEPEPQ 333
EA++Q E L + + E + I +K+ E E +
Sbjct: 313 EAMLQKQSCEELKSDLNTKNELLKQKTIELTRACQKQYELEQE 355
>gi|239752518 PREDICTED: similar to leucine rich repeat containing
50, partial [Homo sapiens]
Length = 489
Score = 77.0 bits (188), Expect = 2e-14
Identities = 55/164 (33%), Positives = 87/164 (53%), Gaps = 3/164 (1%)
Query: 180 SLHTVELRGNQLESTLGIN-LPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLS 238
+L ++L GNQ+ IN L +L+ L LA+N L V+ L L +LT L+LR NQI +
Sbjct: 4 NLDVLDLHGNQITKIENINHLCELRVLNLARNFLSHVDNLNGLDSLTELNLRHNQITFVR 63
Query: 239 GFSREMKSLQYLNLRGNMVANLGELAKLRDLPKLRALVLLDNPCTDETSYRQEALVQMPY 298
+ LQ+L L N +++ ++ L D L + NP E+ Y+ L M
Sbjct: 64 DVDN-LPCLQHLFLSFNNISSFDSVSCLADSSSLSDITFDGNPIAQESWYKHTVLQNMMQ 122
Query: 299 LERLDKEFYEEEERAEADVIRQRLKEEKEQEPEPQRDLEPEQSL 342
L +LD + EEER A V+ ++ +EEK++E Q L+ ++ L
Sbjct: 123 LRQLDMKRITEEERRMASVLAKK-EEEKKRESHKQSLLKEKKRL 165
>gi|194272228 leucine rich repeat containing 48 isoform b [Homo
sapiens]
Length = 457
Score = 67.4 bits (163), Expect = 2e-11
Identities = 60/199 (30%), Positives = 94/199 (47%), Gaps = 5/199 (2%)
Query: 145 QITDTEGISHPRLETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLESTLGI-NLPKLK 203
Q+ EGI + +L L +I + L + +L ++L N +E G+ NL L
Sbjct: 33 QLAKQEGILFKDVLSLQLDFRNILRIDNL--WQFENLRKLQLDNNIIEKIEGLENLAHLV 90
Query: 204 NLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGFSREMKSLQYLNLRGNMVANLGEL 263
L L+ N ++ +EGL+ L NL L L +N+I + +K LQ L+L N + N+ +
Sbjct: 91 WLDLSFNNIETIEGLDTLVNLEDLSLFNNRISKIDSLDALVK-LQVLSLGNNRIDNMMNI 149
Query: 264 AKLRDLPKLRALVLLDNPCTDETSYRQEALVQMPYLERLDKEFYEEEERAEADVIRQ-RL 322
LR LR L L NP ++ Y+ +P L LD ++ + A+ Q +
Sbjct: 150 IYLRRFKCLRTLSLSRNPISEAEDYKMFICAYLPDLMYLDYRRIDDHTKKLAEAKHQYSI 209
Query: 323 KEEKEQEPEPQRDLEPEQS 341
E K QE Q LE EQ+
Sbjct: 210 DELKHQENLMQAQLEDEQA 228
Score = 40.8 bits (94), Expect = 0.002
Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 37/186 (19%)
Query: 45 PTPLTEDMMK---------EGLSLLCKTGNGLAHAYVKLEVKERDLTDIYLLRSYIHLRY 95
P + +DM+K E L K L + L++ R++ I L + +LR
Sbjct: 10 PRVMDDDMLKLAVGDQGPQEEAGQLAKQEGILFKDVLSLQLDFRNILRIDNLWQFENLRK 69
Query: 96 VDISENHLTDLSPLNYLTHLLWLKADGNRLRSAQMNELPYLQIASFAYNQITDTEGI-SH 154
+ + N + + L L HL+WL ++N I EG+ +
Sbjct: 70 LQLDNNIIEKIEGLENLAHLVWL---------------------DLSFNNIETIEGLDTL 108
Query: 155 PRLETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLESTLGI----NLPKLKNLYLAQN 210
LE L+L N I + LD L+ L + L N++++ + I L+ L L++N
Sbjct: 109 VNLEDLSLFNNRISKIDSLD--ALVKLQVLSLGNNRIDNMMNIIYLRRFKCLRTLSLSRN 166
Query: 211 MLKKVE 216
+ + E
Sbjct: 167 PISEAE 172
>gi|194272226 leucine rich repeat containing 48 isoform b [Homo
sapiens]
Length = 457
Score = 67.4 bits (163), Expect = 2e-11
Identities = 60/199 (30%), Positives = 94/199 (47%), Gaps = 5/199 (2%)
Query: 145 QITDTEGISHPRLETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLESTLGI-NLPKLK 203
Q+ EGI + +L L +I + L + +L ++L N +E G+ NL L
Sbjct: 33 QLAKQEGILFKDVLSLQLDFRNILRIDNL--WQFENLRKLQLDNNIIEKIEGLENLAHLV 90
Query: 204 NLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGFSREMKSLQYLNLRGNMVANLGEL 263
L L+ N ++ +EGL+ L NL L L +N+I + +K LQ L+L N + N+ +
Sbjct: 91 WLDLSFNNIETIEGLDTLVNLEDLSLFNNRISKIDSLDALVK-LQVLSLGNNRIDNMMNI 149
Query: 264 AKLRDLPKLRALVLLDNPCTDETSYRQEALVQMPYLERLDKEFYEEEERAEADVIRQ-RL 322
LR LR L L NP ++ Y+ +P L LD ++ + A+ Q +
Sbjct: 150 IYLRRFKCLRTLSLSRNPISEAEDYKMFICAYLPDLMYLDYRRIDDHTKKLAEAKHQYSI 209
Query: 323 KEEKEQEPEPQRDLEPEQS 341
E K QE Q LE EQ+
Sbjct: 210 DELKHQENLMQAQLEDEQA 228
Score = 40.8 bits (94), Expect = 0.002
Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 37/186 (19%)
Query: 45 PTPLTEDMMK---------EGLSLLCKTGNGLAHAYVKLEVKERDLTDIYLLRSYIHLRY 95
P + +DM+K E L K L + L++ R++ I L + +LR
Sbjct: 10 PRVMDDDMLKLAVGDQGPQEEAGQLAKQEGILFKDVLSLQLDFRNILRIDNLWQFENLRK 69
Query: 96 VDISENHLTDLSPLNYLTHLLWLKADGNRLRSAQMNELPYLQIASFAYNQITDTEGI-SH 154
+ + N + + L L HL+WL ++N I EG+ +
Sbjct: 70 LQLDNNIIEKIEGLENLAHLVWL---------------------DLSFNNIETIEGLDTL 108
Query: 155 PRLETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLESTLGI----NLPKLKNLYLAQN 210
LE L+L N I + LD L+ L + L N++++ + I L+ L L++N
Sbjct: 109 VNLEDLSLFNNRISKIDSLD--ALVKLQVLSLGNNRIDNMMNIIYLRRFKCLRTLSLSRN 166
Query: 211 MLKKVE 216
+ + E
Sbjct: 167 PISEAE 172
>gi|194272224 leucine rich repeat containing 48 isoform a [Homo
sapiens]
Length = 523
Score = 67.4 bits (163), Expect = 2e-11
Identities = 60/199 (30%), Positives = 94/199 (47%), Gaps = 5/199 (2%)
Query: 145 QITDTEGISHPRLETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLESTLGI-NLPKLK 203
Q+ EGI + +L L +I + L + +L ++L N +E G+ NL L
Sbjct: 33 QLAKQEGILFKDVLSLQLDFRNILRIDNL--WQFENLRKLQLDNNIIEKIEGLENLAHLV 90
Query: 204 NLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGFSREMKSLQYLNLRGNMVANLGEL 263
L L+ N ++ +EGL+ L NL L L +N+I + +K LQ L+L N + N+ +
Sbjct: 91 WLDLSFNNIETIEGLDTLVNLEDLSLFNNRISKIDSLDALVK-LQVLSLGNNRIDNMMNI 149
Query: 264 AKLRDLPKLRALVLLDNPCTDETSYRQEALVQMPYLERLDKEFYEEEERAEADVIRQ-RL 322
LR LR L L NP ++ Y+ +P L LD ++ + A+ Q +
Sbjct: 150 IYLRRFKCLRTLSLSRNPISEAEDYKMFICAYLPDLMYLDYRRIDDHTKKLAEAKHQYSI 209
Query: 323 KEEKEQEPEPQRDLEPEQS 341
E K QE Q LE EQ+
Sbjct: 210 DELKHQENLMQAQLEDEQA 228
Score = 40.8 bits (94), Expect = 0.002
Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 37/186 (19%)
Query: 45 PTPLTEDMMK---------EGLSLLCKTGNGLAHAYVKLEVKERDLTDIYLLRSYIHLRY 95
P + +DM+K E L K L + L++ R++ I L + +LR
Sbjct: 10 PRVMDDDMLKLAVGDQGPQEEAGQLAKQEGILFKDVLSLQLDFRNILRIDNLWQFENLRK 69
Query: 96 VDISENHLTDLSPLNYLTHLLWLKADGNRLRSAQMNELPYLQIASFAYNQITDTEGI-SH 154
+ + N + + L L HL+WL ++N I EG+ +
Sbjct: 70 LQLDNNIIEKIEGLENLAHLVWL---------------------DLSFNNIETIEGLDTL 108
Query: 155 PRLETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLESTLGI----NLPKLKNLYLAQN 210
LE L+L N I + LD L+ L + L N++++ + I L+ L L++N
Sbjct: 109 VNLEDLSLFNNRISKIDSLD--ALVKLQVLSLGNNRIDNMMNIIYLRRFKCLRTLSLSRN 166
Query: 211 MLKKVE 216
+ + E
Sbjct: 167 PISEAE 172
>gi|194272222 leucine rich repeat containing 48 isoform a [Homo
sapiens]
Length = 523
Score = 67.4 bits (163), Expect = 2e-11
Identities = 60/199 (30%), Positives = 94/199 (47%), Gaps = 5/199 (2%)
Query: 145 QITDTEGISHPRLETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLESTLGI-NLPKLK 203
Q+ EGI + +L L +I + L + +L ++L N +E G+ NL L
Sbjct: 33 QLAKQEGILFKDVLSLQLDFRNILRIDNL--WQFENLRKLQLDNNIIEKIEGLENLAHLV 90
Query: 204 NLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGFSREMKSLQYLNLRGNMVANLGEL 263
L L+ N ++ +EGL+ L NL L L +N+I + +K LQ L+L N + N+ +
Sbjct: 91 WLDLSFNNIETIEGLDTLVNLEDLSLFNNRISKIDSLDALVK-LQVLSLGNNRIDNMMNI 149
Query: 264 AKLRDLPKLRALVLLDNPCTDETSYRQEALVQMPYLERLDKEFYEEEERAEADVIRQ-RL 322
LR LR L L NP ++ Y+ +P L LD ++ + A+ Q +
Sbjct: 150 IYLRRFKCLRTLSLSRNPISEAEDYKMFICAYLPDLMYLDYRRIDDHTKKLAEAKHQYSI 209
Query: 323 KEEKEQEPEPQRDLEPEQS 341
E K QE Q LE EQ+
Sbjct: 210 DELKHQENLMQAQLEDEQA 228
Score = 40.8 bits (94), Expect = 0.002
Identities = 43/186 (23%), Positives = 76/186 (40%), Gaps = 37/186 (19%)
Query: 45 PTPLTEDMMK---------EGLSLLCKTGNGLAHAYVKLEVKERDLTDIYLLRSYIHLRY 95
P + +DM+K E L K L + L++ R++ I L + +LR
Sbjct: 10 PRVMDDDMLKLAVGDQGPQEEAGQLAKQEGILFKDVLSLQLDFRNILRIDNLWQFENLRK 69
Query: 96 VDISENHLTDLSPLNYLTHLLWLKADGNRLRSAQMNELPYLQIASFAYNQITDTEGI-SH 154
+ + N + + L L HL+WL ++N I EG+ +
Sbjct: 70 LQLDNNIIEKIEGLENLAHLVWL---------------------DLSFNNIETIEGLDTL 108
Query: 155 PRLETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLESTLGI----NLPKLKNLYLAQN 210
LE L+L N I + LD L+ L + L N++++ + I L+ L L++N
Sbjct: 109 VNLEDLSLFNNRISKIDSLD--ALVKLQVLSLGNNRIDNMMNIIYLRRFKCLRTLSLSRN 166
Query: 211 MLKKVE 216
+ + E
Sbjct: 167 PISEAE 172
>gi|117414162 sodium channel associated protein 2 isoform a [Homo
sapiens]
Length = 1032
Score = 66.2 bits (160), Expect = 4e-11
Identities = 54/156 (34%), Positives = 80/156 (51%), Gaps = 11/156 (7%)
Query: 157 LETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLESTLGIN-LPKLKNLYLAQNMLKKV 215
L +NL N+I + +D + +L ++L NQ+ G+N L KL L L+ N++ KV
Sbjct: 45 LHAVNLHCNNISKIEAID--HIWNLQHLDLSSNQISRIEGLNTLTKLCTLNLSCNLITKV 102
Query: 216 EGLEDLSNLTTLHLRDNQIDTLSG---FSREMKSLQYLNLRGNMVANLGELAK-LRDLPK 271
EGLE+L NLT L++ N ID LSG L+Y++L N + ++ L + + L
Sbjct: 103 EGLEELINLTRLNVSYNHIDDLSGLIPLHGIKHKLRYIDLHSNRIDSIHHLLQCMVGLHF 162
Query: 272 LRALVLL----DNPCTDETSYRQEALVQMPYLERLD 303
L L+L DNP YR L +P L LD
Sbjct: 163 LTNLILEKDGDDNPVCRLPGYRAVILQTLPQLRILD 198
Score = 28.5 bits (62), Expect = 9.1
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 81 LTDIYLLRSYIHLRYVDISENHLTDLS---PLNYLTH-LLWLKADGNRLRSAQMNELPYL 136
+T + L I+L +++S NH+ DLS PL+ + H L ++ NR+ S + L +
Sbjct: 99 ITKVEGLEELINLTRLNVSYNHIDDLSGLIPLHGIKHKLRYIDLHSNRIDSIH-HLLQCM 157
Query: 137 QIASFAYNQITDTEGISHP 155
F N I + +G +P
Sbjct: 158 VGLHFLTNLILEKDGDDNP 176
>gi|4826651 hypothetical protein LOC755 [Homo sapiens]
Length = 256
Score = 62.8 bits (151), Expect = 4e-10
Identities = 46/139 (33%), Positives = 69/139 (49%), Gaps = 9/139 (6%)
Query: 199 LPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGFSREMKSLQYLNLRGNMVA 258
L ++ L + L + +++ +L + L N I TL SR + L L LR N +
Sbjct: 17 LHSVRKLNCWGSRLTDISICQEMPSLEVITLSVNSISTLEPVSR-CQRLSELYLRRNRIP 75
Query: 259 NLGELAKLRDLPKLRALVLLDNPC--TDETSYRQEALVQMPYLERLDKEFYEEEERAEAD 316
+L EL L+ LP+LR L L +NPC T YR L +P L++LD + EEE + A
Sbjct: 76 SLAELFYLKGLPRLRVLWLAENPCCGTSPHRYRMTVLRTLPRLQKLDNQAVTEEELSRA- 134
Query: 317 VIRQRLKEEKEQEPEPQRD 335
L E +E P+R+
Sbjct: 135 -----LSEGEEITAAPERE 148
>gi|31621309 leucine rich repeat containing 6 [Homo sapiens]
Length = 466
Score = 62.0 bits (149), Expect = 7e-10
Identities = 46/168 (27%), Positives = 79/168 (47%), Gaps = 7/168 (4%)
Query: 178 LISLHTVELRGNQLESTLGIN--LPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQID 235
+ SL + L ++E I+ LK LYL N++ K+E + L L L+L N I+
Sbjct: 20 IFSLEELSLHQQEIERLEHIDKWCRDLKILYLQNNLIGKIENVSKLKKLEYLNLALNNIE 79
Query: 236 TLSGFSREMKSLQYLNLRGNMVANLGELAKLRDLPKLRALVLLDNPCTDETSYRQEALVQ 295
+ + L L+L N + L + L+ L+ L L+ NPC YR+ +
Sbjct: 80 KIENLEG-CEELAKLDLTVNFIGELSSIKNLQHNIHLKELFLMGNPCASFDHYREFVVAT 138
Query: 296 MPYLERLDKEFYEEEERAEA----DVIRQRLKEEKEQEPEPQRDLEPE 339
+P L+ LD + E ER +A VI +++E+++ + L+ E
Sbjct: 139 LPQLKWLDGKEIEPSERIKALQDYSVIEPQIREQEKDHCLKRAKLKEE 186
>gi|66472382 nischarin [Homo sapiens]
Length = 1504
Score = 60.1 bits (144), Expect = 3e-09
Identities = 55/189 (29%), Positives = 90/189 (47%), Gaps = 36/189 (19%)
Query: 155 PRLETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLESTLGIN--LPKLKNLYLAQNML 212
P++E L+L N + +V L + L +L ++L N+L S G++ L +K L LA N+L
Sbjct: 310 PKIEFLDLSHNGLLVVDNL--QHLYNLVHLDLSYNKLSSLEGLHTKLGNIKTLNLAGNLL 367
Query: 213 KKVEGLEDLSNLTTLHLRDNQIDTLSGFSREMKSLQYLNLRGNMVANLGELAKLRDLPKL 272
+ + GL L +L L LRDN+I+ + E+ + LP L
Sbjct: 368 ESLSGLHKLYSLVNLDLRDNRIEQME-----------------------EVRSIGSLPCL 404
Query: 273 RALVLLDNPCTDETSYRQEALVQMPYLER-----LDKEFYEEEERAEADVIR--QRLKEE 325
+ LL+NP + YR + L Q + ER LD E+E +V++ Q+ KE
Sbjct: 405 EHVSLLNNPLSIIPDYRTKVLAQ--FGERASEVCLDDTVTTEKELDTVEVLKAIQKAKEV 462
Query: 326 KEQEPEPQR 334
K + P++
Sbjct: 463 KSKLSNPEK 471
Score = 41.6 bits (96), Expect = 0.001
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 31/127 (24%)
Query: 93 LRYVDISENHLTDLSPLNYLTHLLWLKADGNRLRSAQMNELPYLQIASFAYNQITDTEGI 152
+ ++D+S N L + L +L +L+ L +YN+++ EG+
Sbjct: 312 IEFLDLSHNGLLVVDNLQHLYNLVHL---------------------DLSYNKLSSLEGL 350
Query: 153 SHPRL---ETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLESTLGI----NLPKLKNL 205
H +L +TLNL GN + ++GL KL SL ++LR N++E + +LP L+++
Sbjct: 351 -HTKLGNIKTLNLAGNLLESLSGL--HKLYSLVNLDLRDNRIEQMEEVRSIGSLPCLEHV 407
Query: 206 YLAQNML 212
L N L
Sbjct: 408 SLLNNPL 414
>gi|50593002 small nuclear ribonucleoprotein polypeptide A' [Homo
sapiens]
Length = 255
Score = 59.3 bits (142), Expect = 5e-09
Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 3/136 (2%)
Query: 184 VELRGNQLE--STLGINLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLS-GF 240
++LRG ++ LG L + + + N ++K++G L L TL + +N+I + G
Sbjct: 24 LDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGL 83
Query: 241 SREMKSLQYLNLRGNMVANLGELAKLRDLPKLRALVLLDNPCTDETSYRQEALVQMPYLE 300
+ + L L L N + LG+L L L L L +L NP T++ YR + ++P +
Sbjct: 84 DQALPCLTELILTNNSLVELGDLDPLASLKSLTYLSILRNPVTNKKHYRLYVIYKVPQVR 143
Query: 301 RLDKEFYEEEERAEAD 316
LD + + +ER EA+
Sbjct: 144 VLDFQKVKLKERQEAE 159
>gi|153792305 leucine rich repeat containing 58 [Homo sapiens]
Length = 371
Score = 59.3 bits (142), Expect = 5e-09
Identities = 71/245 (28%), Positives = 110/245 (44%), Gaps = 22/245 (8%)
Query: 43 WLPTPLTEDMMKEGLSLLCKTGNGLAHAYVKLEVKERDLTDI--YLLRSYIHLRYVDISE 100
W ++ + ++ L + G A ++L + L + L + HL+ +D+S
Sbjct: 18 WSRLSVSTETLESELEARGEERRGAREALLRLLLPHNRLVSLPRALGSGFPHLQLLDVSG 77
Query: 101 NHLTDLSP-LNYLTHLLWLKADGNRLRSAQMNELPYLQIASFAYNQITDTEGISHPRLET 159
N LT L P L L L L A NRL P A + + + L+
Sbjct: 78 NALTALGPELLALRGLRTLLAKNNRLGG------PSALPKGLAQSPLCRS-------LQV 124
Query: 160 LNLKGNSIHMVTGLDPEKLISLHTVELRGNQLESTLG--INLPKLKNLYLAQNMLKKV-E 216
LNL GN V E L +L T+ L GNQL+S NL L+ LYL N +K++
Sbjct: 125 LNLSGNCFQEVPASLLE-LRALQTLSLGGNQLQSIPAEIENLQSLECLYLGGNFIKEIPP 183
Query: 217 GLEDLSNLTTLHLRDNQIDTLSGFSREMKSLQYLNLRGNMVANLGELAKLRDLPKLRALV 276
L +L +L L L DN+I ++ ++ SL+ L+L N++ L ++ +L L L
Sbjct: 184 ELGNLPSLNYLVLCDNKIQSIPPQLSQLHSLRSLSLHNNLLTYLPR--EILNLIHLEELS 241
Query: 277 LLDNP 281
L NP
Sbjct: 242 LRGNP 246
>gi|21687175 leucine rich transmembrane and 0-methyltransferase
domain containing isoform 1 [Homo sapiens]
Length = 192
Score = 57.0 bits (136), Expect = 2e-08
Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 6/171 (3%)
Query: 160 LNLKGNSIHMVTGL---DPEKLISLHTVELRGNQLESTLGINLPKLKNLYLAQNMLKKVE 216
L+ SIH++ L +P + G L +L +N L +L + ++
Sbjct: 16 LDYSFRSIHVIQDLVNEEPRTGLRPLKRSKSGKSLTQSLWLNNNVLNDLRDFNQVASQL- 74
Query: 217 GLEDLSNLTTLHLRDNQIDTLSGFSREMKSLQYLNLRGNMVANLGELAKLRDLPKLRALV 276
LE NL + L N + ++ +L L L GN + LGE+ KL LP+LR+L
Sbjct: 75 -LEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHGNSIQRLGEVNKLAVLPRLRSLT 133
Query: 277 LLDNPCTDETSYRQEALVQMPYLERLDKEFYEEEERAEADV-IRQRLKEEK 326
L NP +E YRQ L + + D + +R A+V R +K +K
Sbjct: 134 LHGNPMEEEKGYRQYVLCTLSRITTFDFSGVTKADRTTAEVWKRMNIKPKK 184
>gi|164607156 axonemal dynein light chain 1 [Homo sapiens]
Length = 190
Score = 57.0 bits (136), Expect = 2e-08
Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 7/132 (5%)
Query: 178 LISLHTVELRGNQLESTLGIN-LPKLKNLYLAQNMLKKVEGLEDLSN-LTTLHLRDNQID 235
L + + L N +E +N L L+ L L +N +K + GLE + + L L + N I+
Sbjct: 47 LANCEKLSLSTNCIEKIANLNGLKNLRILSLGRNNIKNLNGLEAVGDTLEELWISYNFIE 106
Query: 236 TLSGFSREMKSLQYLNLRGNMVANLGELAKLRDLPKLRALVLLDNPCTD----ETSYRQE 291
L G MK L+ L + N+V + E KL +LP L LV + NP + E ++ +E
Sbjct: 107 KLKGI-HIMKKLKILYMSNNLVKDWAEFVKLAELPCLEDLVFVGNPLEEKHSAENNWIEE 165
Query: 292 ALVQMPYLERLD 303
A ++P L++LD
Sbjct: 166 ATKRVPKLKKLD 177
>gi|13569879 acidic (leucine-rich) nuclear phosphoprotein 32 family,
member E isoform 1 [Homo sapiens]
Length = 268
Score = 56.6 bits (135), Expect = 3e-08
Identities = 46/146 (31%), Positives = 72/146 (49%), Gaps = 6/146 (4%)
Query: 201 KLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDT-LSGFSREMKSLQYLNLRGNMVAN 259
+L+ L +A L + L L+ L L L DN I L + + +L YLNL GN + +
Sbjct: 43 ELEFLSMANVELSSLARLPSLNKLRKLELSDNIISGGLEVLAEKCPNLTYLNLSGNKIKD 102
Query: 260 LGELAKLRDLPKLRALVLLDNPCTDETSYRQ---EALVQMPYLERLDKEFYEEEERAEAD 316
L + L++L L++L L + T+ YR+ E L Q+ YL+ D+E E + E D
Sbjct: 103 LSTVEALQNLKNLKSLDLFNCEITNLEDYRESIFELLQQITYLDGFDQEDNEAPDSEEED 162
Query: 317 VI--RQRLKEEKEQEPEPQRDLEPEQ 340
+ +EE+E E P E E+
Sbjct: 163 DEDGDEDDEEEEENEAGPPEGYEEEE 188
Score = 37.7 bits (86), Expect = 0.015
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 3 DEDDLEDSEPDQDDSEKEEDE-------KETEEGEDYRKEGEEFPEEWLPTPLTEDMMKE 55
D ++ +D + D+DD E+EE+E +E EE E+ E E+ E+ + L E +
Sbjct: 157 DSEEEDDEDGDEDDEEEEENEAGPPEGYEEEEEEEEEEDEDEDEDEDEAGSELGEGEEEV 216
Query: 56 GLSLLCK 62
GLS L K
Sbjct: 217 GLSYLMK 223
Score = 32.0 bits (71), Expect = 0.83
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 3 DEDDLEDSEPDQDDSEKEEDEKETEEGEDYRKEGEEFPEE 42
++++ DSE ++DD + +ED++E EE E EG E EE
Sbjct: 151 EDNEAPDSE-EEDDEDGDEDDEEEEENEAGPPEGYEEEEE 189
Score = 30.8 bits (68), Expect = 1.8
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 4 EDDLEDSEPDQDDSEKEEDEKETEE----GEDYRKEGEEFPEE 42
+++++D E D D E+ E+E+E EE GE +++ E+ EE
Sbjct: 223 KEEIQDEEDDDDYVEEGEEEEEEEEGGLRGEKRKRDAEDDGEE 265
Score = 29.6 bits (65), Expect = 4.1
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 15/55 (27%)
Query: 3 DEDDLEDSEPDQDDSEKE---------------EDEKETEEGEDYRKEGEEFPEE 42
+E++ ED + D+D++ E E+ ++ E+ +DY +EGEE EE
Sbjct: 191 EEEEDEDEDEDEDEAGSELGEGEEEVGLSYLMKEEIQDEEDDDDYVEEGEEEEEE 245
>gi|4505047 lumican precursor [Homo sapiens]
Length = 338
Score = 55.8 bits (133), Expect = 5e-08
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 12/123 (9%)
Query: 142 AYNQITDTEGI--SHPRLETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLESTLGINL 199
A+ +TD + + H LE +KG KL L + + N L ++G
Sbjct: 85 AFENVTDLQWLILDHNLLENSKIKGRVF--------SKLKQLKKLHINHNNLTESVGPLP 136
Query: 200 PKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQI--DTLSGFSREMKSLQYLNLRGNMV 257
L++L L N + K+ E L NLT +HL+ N++ D +S + +KSL+YL+L N +
Sbjct: 137 KSLEDLQLTHNKITKLGSFEGLVNLTFIHLQHNRLKEDAVSAAFKGLKSLEYLDLSFNQI 196
Query: 258 ANL 260
A L
Sbjct: 197 ARL 199
>gi|16904383 leucine rich repeat containing 7 [Homo sapiens]
Length = 1537
Score = 55.8 bits (133), Expect = 5e-08
Identities = 68/256 (26%), Positives = 116/256 (45%), Gaps = 26/256 (10%)
Query: 92 HLRYVDISENHLTDL-SPLNYLTHLLWLKADGNRLRSAQMN-----ELPYLQIASFAYNQ 145
+LR + + N L L + L L++L NR+ + M+ L L ++S Q
Sbjct: 208 NLRELWMDNNALQVLPGSIGKLKMLVYLDMSKNRIETVDMDISGCEALEDLLLSSNMLQQ 267
Query: 146 ITDTEGISHPRLETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLES---TLGINLPKL 202
+ D+ G+ +L TL + N + M+ L L + N+LES T+G L L
Sbjct: 268 LPDSIGLLK-KLTTLKVDDNQLTMLPNTIGN-LSLLEEFDCSCNELESLPSTIGY-LHSL 324
Query: 203 KNLYLAQNMLKKV-EGLEDLSNLTTLHLRDNQIDTLSGFSREMKSLQYLNLRGNMVANLG 261
+ L + +N L ++ + N+T + LR N+++ L +M+ L+ LNL N + NL
Sbjct: 325 RTLAVDENFLPELPREIGSCKNVTVMSLRSNKLEFLPEEIGQMQKLRVLNLSDNRLKNLP 384
Query: 262 -ELAKLRDLPKL-------RALVLLDNPCTDETSYRQEALVQMPYLERLDKEFYEEEERA 313
KL++L L +AL+ L ET R P R D++F ++
Sbjct: 385 FSFTKLKELAALWLSDNQSKALIPLQTEAHPETKQRVLTNYMFPQQPRGDEDF-----QS 439
Query: 314 EADVIRQRLKEEKEQE 329
++D L EE+ Q+
Sbjct: 440 DSDSFNPTLWEEQRQQ 455
>gi|223718151 leucine rich transmembrane and 0-methyltransferase
domain containing isoform 2 [Homo sapiens]
Length = 158
Score = 55.1 bits (131), Expect = 9e-08
Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 5/142 (3%)
Query: 160 LNLKGNSIHMVTGL---DPEKLISLHTVELRGNQLESTLGINLPKLKNLYLAQNMLKKVE 216
L+ SIH++ L +P + G L +L +N L +L + ++
Sbjct: 16 LDYSFRSIHVIQDLVNEEPRTGLRPLKRSKSGKSLTQSLWLNNNVLNDLRDFNQVASQL- 74
Query: 217 GLEDLSNLTTLHLRDNQIDTLSGFSREMKSLQYLNLRGNMVANLGELAKLRDLPKLRALV 276
LE NL + L N + ++ +L L L GN + LGE+ KL LP+LR+L
Sbjct: 75 -LEHPENLAWIDLSFNDLTSIDPVLTTFFNLSVLYLHGNSIQRLGEVNKLAVLPRLRSLT 133
Query: 277 LLDNPCTDETSYRQEALVQMPY 298
L NP +E YR V+MP+
Sbjct: 134 LHGNPMEEEKGYRVPGSVEMPH 155
>gi|238908508 leucine-rich repeat and death domain-containing
protein [Homo sapiens]
Length = 860
Score = 54.7 bits (130), Expect = 1e-07
Identities = 53/203 (26%), Positives = 100/203 (49%), Gaps = 12/203 (5%)
Query: 89 SYIHLRYVDISENHLTDL--SPLNYLT-HLLWLKADGNRLRSAQMNELPYLQIASFAYNQ 145
S I+L+Y+D+ +N + + S N ++ H+L L + ++ L LQ+ + NQ
Sbjct: 531 SLINLKYLDLGKNQIKKIPASISNMISLHVLILCCNKFETFPRELCTLENLQVLDLSENQ 590
Query: 146 IT--DTEGISHPRLETLNLKGNS-IHMVTGL-DPEKLISLHTVELRGNQLESTLG--INL 199
+ ++ + ++ LN N IH L + L L+ +++G +L G N+
Sbjct: 591 LQKISSDICNLKGIQKLNFSSNQFIHFPIELCQLQSLEQLNISQIKGRKLTRLPGELSNM 650
Query: 200 PKLKNLYLAQNMLKKV-EGLEDLSNLTTLHLRDNQIDTLSGFSREMKSLQYLNLRGNMVA 258
+LK L ++ N ++++ + +L NL +LH +NQI L + LQ LNL GN +
Sbjct: 651 TQLKELDISNNAIREIPRNIGELRNLVSLHAYNNQISYLPPSLLSLNDLQQLNLSGNNLT 710
Query: 259 NLGELAKLRDLPKLRALVLLDNP 281
L + + ++ L+ + DNP
Sbjct: 711 ALP--SAIYNIFSLKEINFDDNP 731
Score = 36.6 bits (83), Expect = 0.034
Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 12/186 (6%)
Query: 105 DLSPLNYLTHLLWLKADGNRLRSAQMNELPYLQIASFAYNQITDTEG---ISHPRLETLN 161
D+ + Y+ +L K + A +L L+I S N ++ + H L LN
Sbjct: 159 DILKIKYVKYLYLDKNQIKTFQGADSGDLLGLEILSLQENGLSSLPSEIQLLH-NLRILN 217
Query: 162 LKGNSIHMVTGLDPEKLISLHTVELRGNQLE---STLGINLPKLKNLYLAQNMLKKV-EG 217
+ N I + + +L ++ + N +E S L L L+ L L +N L+ + +
Sbjct: 218 VSHNHISHIPK-EISQLGNIRQLFFYNNYIENFPSDLEC-LGNLEILSLGKNKLRHIPDT 275
Query: 218 LEDLSNLTTLHLRDNQIDTLSGFSREMKSLQYLNLRGNMVANLGELAKLRDLPKLRALVL 277
L L L L+L NQ+ T + L L+L GN++++L + ++R+L L L++
Sbjct: 276 LPSLKTLRVLNLEYNQLTTFPKALCFLPKLISLDLTGNLISSLPK--EIRELKNLETLLM 333
Query: 278 LDNPCT 283
N T
Sbjct: 334 DHNKLT 339
Score = 36.6 bits (83), Expect = 0.034
Identities = 43/181 (23%), Positives = 85/181 (46%), Gaps = 19/181 (10%)
Query: 93 LRYVDISENHLTDL-SPLNYLTHLLWLKADGNRLRSA--QMNELPYLQIASFAYNQIT-- 147
LR +++ N LT L +L L+ L GN + S ++ EL L+ +N++T
Sbjct: 282 LRVLNLEYNQLTTFPKALCFLPKLISLDLTGNLISSLPKEIRELKNLETLLMDHNKLTFL 341
Query: 148 DTEGISHPRLETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQLESTLGINLPK------ 201
E +++ L L N + +++ K+ + ELR L+ L N+P+
Sbjct: 342 AVEIFQLLKIKELQLADNKLEVIS----HKIENFR--ELRILILDKNLLKNIPEKISCCA 395
Query: 202 -LKNLYLAQNMLKKV-EGLEDLSNLTTLHLRDNQIDTLSGFSREMKSLQYLNLRGNMVAN 259
L+ L L+ N L ++ + + L+NL LH+ N + ++ + ++ L GN++ +
Sbjct: 396 MLECLSLSDNKLTELPKYIHKLNNLRKLHVNRNNMVKITDCISHLNNICSLEFSGNIITD 455
Query: 260 L 260
+
Sbjct: 456 V 456
>gi|118442828 beta-tubulin cofactor E [Homo sapiens]
Length = 527
Score = 54.7 bits (130), Expect = 1e-07
Identities = 72/269 (26%), Positives = 117/269 (43%), Gaps = 42/269 (15%)
Query: 92 HLRYVDISENHLTDLSPL----NYLTHLLWLKADGNRLR----SAQMNELPYLQIASFAY 143
++R VD+S+N L+ + + L HL L N+L+ S L L++
Sbjct: 154 NIRKVDLSKNLLSSWDEVIHIADQLRHLEVLNVSENKLKFPSGSVLTGTLSVLKVLVLNQ 213
Query: 144 NQITDTEGI----SHPRLETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQL----ESTL 195
IT E + P LE L L+ N+I ++ + L ++ ++L NQL + L
Sbjct: 214 TGITWAEVLRCVAGCPGLEELYLESNNI-FISERPTDVLQTVKLLDLSSNQLIDENQLYL 272
Query: 196 GINLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGFSREMKSLQYLNLRGN 255
+LP+L+ L L+ + +++LH D I + SL+YL + N
Sbjct: 273 IAHLPRLEQLILSD------------TGISSLHFPDAGIGCKTSM---FPSLKYLVVNDN 317
Query: 256 MVANLGELAKLRDLPKLRALVLLDNPCTDETSYRQEA----LVQMPYLERLDK--EFYEE 309
++ +L LP LRAL L NP T E + A + + L+ L+K EE
Sbjct: 318 QISQWSFFNELEKLPSLRALSCLRNPLTKEDKEAETARLLIIASIGQLKTLNKCEILPEE 377
Query: 310 EERAEADVIRQRLKEEKE----QEPEPQR 334
RAE D + E K+ ++PE R
Sbjct: 378 RRRAELDYRKAFGNEWKQAGGHKDPEKNR 406
>gi|4507375 beta-tubulin cofactor E [Homo sapiens]
Length = 527
Score = 54.7 bits (130), Expect = 1e-07
Identities = 72/269 (26%), Positives = 117/269 (43%), Gaps = 42/269 (15%)
Query: 92 HLRYVDISENHLTDLSPL----NYLTHLLWLKADGNRLR----SAQMNELPYLQIASFAY 143
++R VD+S+N L+ + + L HL L N+L+ S L L++
Sbjct: 154 NIRKVDLSKNLLSSWDEVIHIADQLRHLEVLNVSENKLKFPSGSVLTGTLSVLKVLVLNQ 213
Query: 144 NQITDTEGI----SHPRLETLNLKGNSIHMVTGLDPEKLISLHTVELRGNQL----ESTL 195
IT E + P LE L L+ N+I ++ + L ++ ++L NQL + L
Sbjct: 214 TGITWAEVLRCVAGCPGLEELYLESNNI-FISERPTDVLQTVKLLDLSSNQLIDENQLYL 272
Query: 196 GINLPKLKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQIDTLSGFSREMKSLQYLNLRGN 255
+LP+L+ L L+ + +++LH D I + SL+YL + N
Sbjct: 273 IAHLPRLEQLILSD------------TGISSLHFPDAGIGCKTSM---FPSLKYLVVNDN 317
Query: 256 MVANLGELAKLRDLPKLRALVLLDNPCTDETSYRQEA----LVQMPYLERLDK--EFYEE 309
++ +L LP LRAL L NP T E + A + + L+ L+K EE
Sbjct: 318 QISQWSFFNELEKLPSLRALSCLRNPLTKEDKEAETARLLIIASIGQLKTLNKCEILPEE 377
Query: 310 EERAEADVIRQRLKEEKE----QEPEPQR 334
RAE D + E K+ ++PE R
Sbjct: 378 RRRAELDYRKAFGNEWKQAGGHKDPEKNR 406
>gi|210147571 acidic (leucine-rich) nuclear phosphoprotein 32
family, member E isoform 3 [Homo sapiens]
Length = 220
Score = 54.7 bits (130), Expect = 1e-07
Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 207 LAQNMLKKVEGLEDLSNLTTLHLRDNQIDT-LSGFSREMKSLQYLNLRGNMVANLGELAK 265
+A L + L L+ L L L DN I L + + +L YLNL GN + +L +
Sbjct: 1 MANVELSSLARLPSLNKLRKLELSDNIISGGLEVLAEKCPNLTYLNLSGNKIKDLSTVEA 60
Query: 266 LRDLPKLRALVLLDNPCTDETSYRQ---EALVQMPYLERLDKEFYEEEERAEADVI--RQ 320
L++L L++L L + T+ YR+ E L Q+ YL+ D+E E + E D +
Sbjct: 61 LQNLKNLKSLDLFNCEITNLEDYRESIFELLQQITYLDGFDQEDNEAPDSEEEDDEDGDE 120
Query: 321 RLKEEKEQEPEPQRDLEPEQ 340
+EE+E E P E E+
Sbjct: 121 DDEEEEENEAGPPEGYEEEE 140
Score = 37.7 bits (86), Expect = 0.015
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 3 DEDDLEDSEPDQDDSEKEEDE-------KETEEGEDYRKEGEEFPEEWLPTPLTEDMMKE 55
D ++ +D + D+DD E+EE+E +E EE E+ E E+ E+ + L E +
Sbjct: 109 DSEEEDDEDGDEDDEEEEENEAGPPEGYEEEEEEEEEEDEDEDEDEDEAGSELGEGEEEV 168
Query: 56 GLSLLCK 62
GLS L K
Sbjct: 169 GLSYLMK 175
Score = 32.0 bits (71), Expect = 0.83
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 3 DEDDLEDSEPDQDDSEKEEDEKETEEGEDYRKEGEEFPEE 42
++++ DSE ++DD + +ED++E EE E EG E EE
Sbjct: 103 EDNEAPDSE-EEDDEDGDEDDEEEEENEAGPPEGYEEEEE 141
Score = 30.8 bits (68), Expect = 1.8
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 4 EDDLEDSEPDQDDSEKEEDEKETEE----GEDYRKEGEEFPEE 42
+++++D E D D E+ E+E+E EE GE +++ E+ EE
Sbjct: 175 KEEIQDEEDDDDYVEEGEEEEEEEEGGLRGEKRKRDAEDDGEE 217
Score = 29.6 bits (65), Expect = 4.1
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 15/55 (27%)
Query: 3 DEDDLEDSEPDQDDSEKE---------------EDEKETEEGEDYRKEGEEFPEE 42
+E++ ED + D+D++ E E+ ++ E+ +DY +EGEE EE
Sbjct: 143 EEEEDEDEDEDEDEAGSELGEGEEEVGLSYLMKEEIQDEEDDDDYVEEGEEEEEE 197
>gi|5453880 acidic (leucine-rich) nuclear phosphoprotein 32 family,
member A [Homo sapiens]
Length = 249
Score = 54.3 bits (129), Expect = 2e-07
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 3/127 (2%)
Query: 212 LKKVEGLEDLSNLTTLHLRDNQIDT-LSGFSREMKSLQYLNLRGNMVANLGELAKLRDLP 270
L + L L+ L L L DN++ L + + +L +LNL GN + +L + L+ L
Sbjct: 54 LTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLE 113
Query: 271 KLRALVLLDNPCTDETSYRQEALVQMPYLERLDKEFYEEEERAEADV--IRQRLKEEKEQ 328
L++L L + T+ YR+ +P L LD +++E ++D + L +E+E
Sbjct: 114 NLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYDRDDKEAPDSDAEGYVEGLDDEEED 173
Query: 329 EPEPQRD 335
E E + D
Sbjct: 174 EDEEEYD 180
Score = 37.0 bits (84), Expect = 0.026
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 1 MSDEDDLEDSEPDQDDS---EKEEDEKETEEGEDYRKEGEEFPEE 42
+ DE++ ED E +D+ E EEDE E EEGE+ GEE +E
Sbjct: 167 LDDEEEDEDEEEYDEDAQVVEDEEDEDEEEEGEEEDVSGEEEEDE 211
Score = 35.4 bits (80), Expect = 0.075
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 5 DDLEDSEPDQDDSEKEEDEK--ETEEGEDYRKEGEE 38
+ L+D E D+D+ E +ED + E EE ED +EGEE
Sbjct: 165 EGLDDEEEDEDEEEYDEDAQVVEDEEDEDEEEEGEE 200
Score = 32.7 bits (73), Expect = 0.48
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 3 DEDDLEDSEPDQDDSEKEEDEKETEEGE-DYRKEGEEFPEE 42
DED+ E+ E + E+EEDE+ +GE D ++ EE EE
Sbjct: 191 DEDEEEEGEEEDVSGEEEEDEEGYNDGEVDDEEDEEELGEE 231
Score = 31.6 bits (70), Expect = 1.1
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 3 DEDDLEDSEPDQD----DSEKEEDEKETEEGEDYRKEGEEFPE 41
+E+D ++ E D+D + E++EDE+E E ED E EE E
Sbjct: 170 EEEDEDEEEYDEDAQVVEDEEDEDEEEEGEEEDVSGEEEEDEE 212
>gi|5454088 acidic (leucine-rich) nuclear phosphoprotein 32 family,
member B [Homo sapiens]
Length = 251
Score = 54.3 bits (129), Expect = 2e-07
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 2/140 (1%)
Query: 202 LKNLYLAQNMLKKVEGLEDLSNLTTLHLRDNQI-DTLSGFSREMKSLQYLNLRGNMVANL 260
L+ L L L V L L L L L +N+I L + ++ +L +LNL GN + ++
Sbjct: 44 LEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDI 103
Query: 261 GELAKLRDLPKLRALVLLDNPCTDETSYRQEALVQMPYLERLDKEFYEEEERAEADVIRQ 320
L L+ L L++L L + T+ YR+ +P L LD E++E ++D
Sbjct: 104 STLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDSDAEVD 163
Query: 321 RLKEEKE-QEPEPQRDLEPE 339
+ EE+E +E E + D + E
Sbjct: 164 GVDEEEEDEEGEDEEDEDDE 183
Score = 36.6 bits (83), Expect = 0.034
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 3 DEDDLEDSEPDQDDSEKEEDEKETEEGEDYRKEGEEFPEE 42
+ED+ + E D+DD + EE+E + E+ ED EG+E +E
Sbjct: 169 EEDEEGEDEEDEDDEDGEEEEFDEEDDEDEDVEGDEDDDE 208
Score = 33.5 bits (75), Expect = 0.28
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 3 DEDDLEDSEPDQDDSEKEEDEKETEEGEDYRKEGEEFPEEW 43
DE+D +D + ++++ ++E+DE E EG++ E E EE+
Sbjct: 176 DEEDEDDEDGEEEEFDEEDDEDEDVEGDEDDDEVSEEEEEF 216
Score = 32.7 bits (73), Expect = 0.48
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 3 DEDDLE----DSEPDQDDSEKEEDEKETEEGEDYRK-EGEEFPEE 42
D +D E D+E D D E+E++E E EE ED E EEF EE
Sbjct: 149 DREDQEAPDSDAEVDGVDEEEEDEEGEDEEDEDDEDGEEEEFDEE 193
Score = 32.7 bits (73), Expect = 0.48
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 3 DEDDLEDSEPDQDDSEKEEDEKETEEGEDYRKEGEEFPEE 42
DE+D ED + + D+ + E E+E E G D E E+ EE
Sbjct: 191 DEEDDEDEDVEGDEDDDEVSEEEEEFGLDEEDEDEDEDEE 230
Score = 32.7 bits (73), Expect = 0.48
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 3 DEDDLEDSEPDQDDSEKEEDEKE---TEEGEDYRKEGEE 38
++D+ ED E D+DD E E+E+E EE ED ++ EE
Sbjct: 193 EDDEDEDVEGDEDDDEVSEEEEEFGLDEEDEDEDEDEEE 231
Score = 32.3 bits (72), Expect = 0.63
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 3 DEDDLEDSEPDQDDSEKE--EDEKETEEGEDYRKEGEEFPEE 42
D D ED E D+E + ++E+E EEGED E +E EE
Sbjct: 146 DGYDREDQEAPDSDAEVDGVDEEEEDEEGEDEEDEDDEDGEE 187
Score = 28.9 bits (63), Expect = 7.0
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 8/48 (16%)
Query: 3 DEDDLEDSEPDQD--------DSEKEEDEKETEEGEDYRKEGEEFPEE 42
DEDD E SE +++ D +++E+E+E +GE ++E ++ E+
Sbjct: 203 DEDDDEVSEEEEEFGLDEEDEDEDEDEEEEEGGKGEKRKRETDDEGED 250
Score = 28.5 bits (62), Expect = 9.1
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 6/46 (13%)
Query: 3 DEDDLEDSEPDQDDSEKEE------DEKETEEGEDYRKEGEEFPEE 42
D++D E+ E D++D E E+ D++ +EE E++ + E+ E+
Sbjct: 181 DDEDGEEEEFDEEDDEDEDVEGDEDDDEVSEEEEEFGLDEEDEDED 226
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.133 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,542,540
Number of Sequences: 37866
Number of extensions: 651525
Number of successful extensions: 13149
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 308
Number of HSP's that attempted gapping in prelim test: 6765
Number of HSP's gapped (non-prelim): 4488
length of query: 343
length of database: 18,247,518
effective HSP length: 103
effective length of query: 240
effective length of database: 14,347,320
effective search space: 3443356800
effective search space used: 3443356800
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.