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Search of human proteins with 42476206
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|42476206 receptor accessory protein 2 [Homo sapiens]
(252 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|42476206 receptor accessory protein 2 [Homo sapiens] 500 e-142
gi|12597657 receptor accessory protein 1 [Homo sapiens] 263 1e-70
gi|20149695 receptor accessory protein 4 [Homo sapiens] 249 1e-66
gi|47679089 receptor accessory protein 3 [Homo sapiens] 245 2e-65
gi|115430112 receptor accessory protein 5 [Homo sapiens] 100 2e-21
gi|19923919 receptor accessory protein 6 [Homo sapiens] 80 2e-15
gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f... 33 0.31
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 33 0.31
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 33 0.31
gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b ... 33 0.31
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ... 33 0.31
gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c ... 33 0.31
gi|24307909 ral guanine nucleotide dissociation stimulator isofo... 32 0.40
gi|108796058 ral guanine nucleotide dissociation stimulator isof... 32 0.40
gi|31044432 LEM domain containing 2 isoform 1 [Homo sapiens] 32 0.40
gi|48255931 hepatoma-derived growth factor-related protein 2 iso... 32 0.40
gi|14249158 hepatoma-derived growth factor-related protein 2 iso... 32 0.40
gi|14790190 spen homolog, transcriptional regulator [Homo sapiens] 32 0.53
gi|153945728 microtubule-associated protein 1B [Homo sapiens] 32 0.53
gi|239753786 PREDICTED: hypothetical protein LOC100129786 [Homo ... 31 0.90
gi|169167301 PREDICTED: hypothetical protein LOC100129786 [Homo ... 31 0.90
gi|169166477 PREDICTED: hypothetical protein LOC100129786 [Homo ... 31 0.90
gi|247301334 non-protein coding RNA 153 isoform 3 [Homo sapiens] 31 1.2
gi|247301318 non-protein coding RNA 153 isoform 2 [Homo sapiens] 31 1.2
gi|118150654 non-protein coding RNA 153 isoform 1 [Homo sapiens] 31 1.2
gi|151301171 RNA polymerase II transcription factor TAFII140 [Ho... 31 1.2
gi|27894378 chloride intracellular channel 6 [Homo sapiens] 30 1.5
gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo sa... 30 2.0
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 30 2.0
gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens] 30 2.0
>gi|42476206 receptor accessory protein 2 [Homo sapiens]
Length = 252
Score = 500 bits (1288), Expect = e-142
Identities = 252/252 (100%), Positives = 252/252 (100%)
Query: 1 MVSWIISRLVVLIFGTLYPAYSSYKAVKTKNVKEYVKWMMYWIVFAFFTTAETLTDIVLS 60
MVSWIISRLVVLIFGTLYPAYSSYKAVKTKNVKEYVKWMMYWIVFAFFTTAETLTDIVLS
Sbjct: 1 MVSWIISRLVVLIFGTLYPAYSSYKAVKTKNVKEYVKWMMYWIVFAFFTTAETLTDIVLS 60
Query: 61 WFPFYFELKIAFVIWLLSPYTKGSSVLYRKFVHPTLSNKEKEIDEYITQARDKSYETMMR 120
WFPFYFELKIAFVIWLLSPYTKGSSVLYRKFVHPTLSNKEKEIDEYITQARDKSYETMMR
Sbjct: 61 WFPFYFELKIAFVIWLLSPYTKGSSVLYRKFVHPTLSNKEKEIDEYITQARDKSYETMMR 120
Query: 121 VGKRGLNLAANAAVTAAAKGVLSEKLRSFSMQDLTLIRDEDALPLQRPDGRLRPSPGSLL 180
VGKRGLNLAANAAVTAAAKGVLSEKLRSFSMQDLTLIRDEDALPLQRPDGRLRPSPGSLL
Sbjct: 121 VGKRGLNLAANAAVTAAAKGVLSEKLRSFSMQDLTLIRDEDALPLQRPDGRLRPSPGSLL 180
Query: 181 DTIEDLGDDPALSLRSSTNPADSRTEASEDDMGDKAPKRAKPIKKAPKAEPLASKTLKTR 240
DTIEDLGDDPALSLRSSTNPADSRTEASEDDMGDKAPKRAKPIKKAPKAEPLASKTLKTR
Sbjct: 181 DTIEDLGDDPALSLRSSTNPADSRTEASEDDMGDKAPKRAKPIKKAPKAEPLASKTLKTR 240
Query: 241 PKKKTSGGGDSA 252
PKKKTSGGGDSA
Sbjct: 241 PKKKTSGGGDSA 252
>gi|12597657 receptor accessory protein 1 [Homo sapiens]
Length = 201
Score = 263 bits (671), Expect = 1e-70
Identities = 133/180 (73%), Positives = 151/180 (83%), Gaps = 7/180 (3%)
Query: 1 MVSWIISRLVVLIFGTLYPAYSSYKAVKTKNVKEYVKWMMYWIVFAFFTTAETLTDIVLS 60
MVSWIISRLVVLIFGTLYPAY SYKAVK+K++KEYVKWMMYWI+FA FTTAET TDI L
Sbjct: 1 MVSWIISRLVVLIFGTLYPAYYSYKAVKSKDIKEYVKWMMYWIIFALFTTAETFTDIFLC 60
Query: 61 WFPFYFELKIAFVIWLLSPYTKGSSVLYRKFVHPTLSNKEKEIDEYITQARDKSYETMMR 120
WFPFY+ELKIAFV WLLSPYTKGSS+LYRKFVHPTLS+KEKEID+ + QA+D+SY+ ++
Sbjct: 61 WFPFYYELKIAFVAWLLSPYTKGSSLLYRKFVHPTLSSKEKEIDDCLVQAKDRSYDALVH 120
Query: 121 VGKRGLNLAANAAVTAAAK--GVLSEKLRSFSMQDLTLIRDEDALPLQRPDGRLRPSPGS 178
GKRGLN+AA AAV AA+K G LSE+LRSFSMQDLT IR + A P G P PGS
Sbjct: 121 FGKRGLNVAATAAVMAASKGQGALSERLRSFSMQDLTTIRGDGA---PAPSG--PPPPGS 175
>gi|20149695 receptor accessory protein 4 [Homo sapiens]
Length = 257
Score = 249 bits (637), Expect = 1e-66
Identities = 134/259 (51%), Positives = 171/259 (66%), Gaps = 23/259 (8%)
Query: 1 MVSWIISRLVVLIFGTLYPAYSSYKAVKTKNVKEYVKWMMYWIVFAFFTTAETLTDIVLS 60
MVSW+I RLVVL+FG L PAY+SYKAVKTKN++EYV+WMMYWIVFA F AE +TDI +S
Sbjct: 1 MVSWMICRLVVLVFGMLCPAYASYKAVKTKNIREYVRWMMYWIVFALFMAAEIVTDIFIS 60
Query: 61 WFPFYFELKIAFVIWLLSPYTKGSSVLYRKFVHPTLSNKEKEIDEYITQARDKSYETMMR 120
WFPFY+E+K+AFV+WLLSPYTKG+S+LYRKFVHP+LS EKEID YI QA+++SYET++
Sbjct: 61 WFPFYYEIKMAFVLWLLSPYTKGASLLYRKFVHPSLSRHEKEIDAYIVQAKERSYETVLS 120
Query: 121 VGKRGLNLAANAAVTAAAK--GVLSEKLRSFSMQDLTLIRD------------EDALPLQ 166
GKRGLN+AA+AAV AA K G L+ +LRSFSMQDL I D ED + +
Sbjct: 121 FGKRGLNIAASAAVQAATKSQGALAGRLRSFSMQDLRSISDAPAPAYHDPLYLEDQVSHR 180
Query: 167 RPDGRLRPSPGSLLDTIEDLGDDPALSLRSSTNPADSRTEASEDDMGDKAPKRAKPIKKA 226
RP R DT ++ D R+ P + S+ + +K+
Sbjct: 181 RPPIGYRAGGLQDSDTEDECWSDTEAVPRAPARPREKPLIRSQS---------LRVVKRK 231
Query: 227 PKAEPLASKTLKTRPKKKT 245
P S++LK R +KKT
Sbjct: 232 PPVREGTSRSLKVRTRKKT 250
>gi|47679089 receptor accessory protein 3 [Homo sapiens]
Length = 255
Score = 245 bits (626), Expect = 2e-65
Identities = 131/258 (50%), Positives = 175/258 (67%), Gaps = 22/258 (8%)
Query: 1 MVSWIISRLVVLIFGTLYPAYSSYKAVKTKNVKEYVKWMMYWIVFAFFTTAETLTDIVLS 60
MVSW+ISR VVL+FG LYPAY SYKAVKTKNVKEYV+WMMYWIVFA +T ET+ D ++
Sbjct: 1 MVSWMISRAVVLVFGMLYPAYYSYKAVKTKNVKEYVRWMMYWIVFALYTVIETVADQTVA 60
Query: 61 WFPFYFELKIAFVIWLLSPYTKGSSVLYRKFVHPTLSNKEKEIDEYITQARDKSYETMMR 120
WFP Y+ELKIAFVIWLLSPYTKG+S++YRKF+HP LS+KE+EID+YI QA+++ YETM+
Sbjct: 61 WFPLYYELKIAFVIWLLSPYTKGASLIYRKFLHPLLSSKEREIDDYIVQAKERGYETMVN 120
Query: 121 VGKRGLNLAANAAVTAAAK--GVLSEKLRSFSMQDLTLIRDEDAL------PLQRPDGRL 172
G++GLNLAA AAVTAA K G ++E+LRSFSM DLT I+ ++ + PL +
Sbjct: 121 FGRQGLNLAATAAVTAAVKSQGAITERLRSFSMHDLTTIQGDEPVGQRPYQPLPEAKKKS 180
Query: 173 RPSPGSLLDTIEDLGDDPALSLRSSTNPADSRTEA--SEDDM----GDKAPKRAKPIKKA 226
+P+P E G + L+ D E S+++M G + + K +K
Sbjct: 181 KPAPS------ESAG--YGIPLKDGDEKTDEEAEGPYSDNEMLTHKGLRRSQSMKSVKTT 232
Query: 227 PKAEPLASKTLKTRPKKK 244
+ + +LK + KK+
Sbjct: 233 KGRKEVRYGSLKYKVKKR 250
>gi|115430112 receptor accessory protein 5 [Homo sapiens]
Length = 189
Score = 99.8 bits (247), Expect = 2e-21
Identities = 43/124 (34%), Positives = 73/124 (58%), Gaps = 1/124 (0%)
Query: 9 LVVLIFGTLYPAYSSYKAVKTKNVKEYVKWMMYWIVFAFFTTAETLTDIVLSWFPFYFEL 68
L+ + G YPAY S KA+++ N ++ +W+ YW+V+ F+ AE +DI LSWFPFY+ L
Sbjct: 57 LLCNLIGFGYPAYISIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDIFLSWFPFYYML 116
Query: 69 KIAFVIWLLSPY-TKGSSVLYRKFVHPTLSNKEKEIDEYITQARDKSYETMMRVGKRGLN 127
K F++W ++P + G+ +LY++ + P E ++D + +DK+ ET + K
Sbjct: 117 KCGFLLWCMAPSPSNGAELLYKRIIRPFFLKHESQMDSVVKDLKDKAKETADAITKEAKK 176
Query: 128 LAAN 131
N
Sbjct: 177 ATVN 180
>gi|19923919 receptor accessory protein 6 [Homo sapiens]
Length = 184
Score = 80.1 bits (196), Expect = 2e-15
Identities = 35/109 (32%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Query: 9 LVVLIFGTLYPAYSSYKAVKTKNVKEYVKWMMYWIVFAFFTTAETLTDIVLSWFPFYFEL 68
L+ + G +YPAY+S KA+++ + + W+ YW+V+A F AE +D++LSWFPFY+
Sbjct: 56 LLCNLIGFVYPAYASIKAIESPSKDDDTVWLTYWVVYALFGLAEFFSDLLLSWFPFYYVG 115
Query: 69 KIAFVIWLLSPYT-KGSSVLYRKFVHPTLSNKEKEIDEYITQARDKSYE 116
K AF+++ ++P G+ +LY++ V P +D + ++ +
Sbjct: 116 KCAFLLFCMAPRPWNGALMLYQRVVRPLFLRHHGAVDRIMNDLSGRALD 164
>gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f
[Homo sapiens]
Length = 1412
Score = 32.7 bits (73), Expect = 0.31
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 202 DSRTEASEDDMGDKAPKRAKPIKKAPKAEPLASKTLKTRPKK 243
DS++ + E D ++AP +AKP KAP+ AS K P+K
Sbjct: 332 DSQSSSEESDSEEEAPAQAKPSGKAPQVR-AASAPAKESPRK 372
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 32.7 bits (73), Expect = 0.31
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 202 DSRTEASEDDMGDKAPKRAKPIKKAPKAEPLASKTLKTRPKK 243
DS++ + E D ++AP +AKP KAP+ AS K P+K
Sbjct: 409 DSQSSSEESDSEEEAPAQAKPSGKAPQVR-AASAPAKESPRK 449
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 32.7 bits (73), Expect = 0.31
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 202 DSRTEASEDDMGDKAPKRAKPIKKAPKAEPLASKTLKTRPKK 243
DS++ + E D ++AP +AKP KAP+ AS K P+K
Sbjct: 409 DSQSSSEESDSEEEAPAQAKPSGKAPQVR-AASAPAKESPRK 449
>gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b
[Homo sapiens]
Length = 1411
Score = 32.7 bits (73), Expect = 0.31
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 202 DSRTEASEDDMGDKAPKRAKPIKKAPKAEPLASKTLKTRPKK 243
DS++ + E D ++AP +AKP KAP+ AS K P+K
Sbjct: 332 DSQSSSEESDSEEEAPAQAKPSGKAPQVR-AASAPAKESPRK 372
>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a
[Homo sapiens]
Length = 1450
Score = 32.7 bits (73), Expect = 0.31
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 202 DSRTEASEDDMGDKAPKRAKPIKKAPKAEPLASKTLKTRPKK 243
DS++ + E D ++AP +AKP KAP+ AS K P+K
Sbjct: 409 DSQSSSEESDSEEEAPAQAKPSGKAPQVR-AASAPAKESPRK 449
>gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c
[Homo sapiens]
Length = 958
Score = 32.7 bits (73), Expect = 0.31
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 202 DSRTEASEDDMGDKAPKRAKPIKKAPKAEPLASKTLKTRPKK 243
DS++ + E D ++AP +AKP KAP+ AS K P+K
Sbjct: 409 DSQSSSEESDSEEEAPAQAKPSGKAPQVR-AASAPAKESPRK 449
>gi|24307909 ral guanine nucleotide dissociation stimulator isoform
1 [Homo sapiens]
Length = 914
Score = 32.3 bits (72), Expect = 0.40
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 13/89 (14%)
Query: 154 LTLIRDEDALPLQRPDGRLRPSPGSLLDTIEDLGDDPALSLRSSTNPADSRTEASEDDMG 213
LT R +P P+ P+P P L + PA +A E +G
Sbjct: 277 LTPARAPSPVPAPAPEPEPAPTPA------------PGSELEVAPAPAPELQQAPEPAVG 324
Query: 214 -DKAPKRAKPIKKAPKAEPLASKTLKTRP 241
+ AP A ++ AP+ +P S+TL+ P
Sbjct: 325 LESAPAPALELEPAPEQDPAPSQTLELEP 353
>gi|108796058 ral guanine nucleotide dissociation stimulator isoform
2 [Homo sapiens]
Length = 859
Score = 32.3 bits (72), Expect = 0.40
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 13/89 (14%)
Query: 154 LTLIRDEDALPLQRPDGRLRPSPGSLLDTIEDLGDDPALSLRSSTNPADSRTEASEDDMG 213
LT R +P P+ P+P P L + PA +A E +G
Sbjct: 222 LTPARAPSPVPAPAPEPEPAPTPA------------PGSELEVAPAPAPELQQAPEPAVG 269
Query: 214 -DKAPKRAKPIKKAPKAEPLASKTLKTRP 241
+ AP A ++ AP+ +P S+TL+ P
Sbjct: 270 LESAPAPALELEPAPEQDPAPSQTLELEP 298
>gi|31044432 LEM domain containing 2 isoform 1 [Homo sapiens]
Length = 503
Score = 32.3 bits (72), Expect = 0.40
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 21/97 (21%)
Query: 151 MQDLTLIRDEDALPLQRPDGRLRPSPGSLLDTIEDLGDDPALSLRSSTNPADS---RTEA 207
+ DL L R+ AL Q PG + DT D+ + LR D R EA
Sbjct: 4 LSDLELRRELQALGFQ---------PGPITDTTRDVYRNKLRRLRGEARLRDEERLREEA 54
Query: 208 ---------SEDDMGDKAPKRAKPIKKAPKAEPLASK 235
E + + AP RA+P +P+AEP S+
Sbjct: 55 RPRGEERLREEARLREDAPLRARPAAASPRAEPWLSQ 91
>gi|48255931 hepatoma-derived growth factor-related protein 2
isoform 1 [Homo sapiens]
Length = 671
Score = 32.3 bits (72), Expect = 0.40
Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 19/169 (11%)
Query: 97 SNKEKEIDEYITQARDKSYETMMRVGKRGLNLAANAAVTAAAKGVLSEKLRSFSMQDLTL 156
S+ +K D + + K+ M V KR +++ + + SE+ S S +
Sbjct: 144 SDSDKSSDN--SGLKRKTPALKMSVSKRARKASSDLDQASVSP---SEEENSESSSESEK 198
Query: 157 IRDEDALPLQRP----------DGRLRPSPGSLLDTIEDLGDDPA----LSLRSSTNPAD 202
D+D P ++ GR + S D+ D A +++ S + +
Sbjct: 199 TSDQDFTPEKKAAVRAPRRGPLGGRKKKKAPSASDSDSKADSDGAKPEPVAMARSASSSS 258
Query: 203 SRTEASEDDMGDKAPKRAKPIKKAPKAEPLASKTLKTRPKKKTSGGGDS 251
S + +S+ D+ K P R + + P +P K RP +S DS
Sbjct: 259 SSSSSSDSDVSVKKPPRGRKPAEKPLPKPRGRKPKPERPPSSSSSDSDS 307
>gi|14249158 hepatoma-derived growth factor-related protein 2
isoform 2 [Homo sapiens]
Length = 670
Score = 32.3 bits (72), Expect = 0.40
Identities = 36/169 (21%), Positives = 66/169 (39%), Gaps = 19/169 (11%)
Query: 97 SNKEKEIDEYITQARDKSYETMMRVGKRGLNLAANAAVTAAAKGVLSEKLRSFSMQDLTL 156
S+ +K D + + K+ M V KR +++ + + SE+ S S +
Sbjct: 144 SDSDKSSDN--SGLKRKTPALKMSVSKRARKASSDLDQASVSP---SEEENSESSSESEK 198
Query: 157 IRDEDALPLQRP----------DGRLRPSPGSLLDTIEDLGDDPA----LSLRSSTNPAD 202
D+D P ++ GR + S D+ D A +++ S + +
Sbjct: 199 TSDQDFTPEKKAAVRAPRRGPLGGRKKKKAPSASDSDSKADSDGAKPEPVAMARSASSSS 258
Query: 203 SRTEASEDDMGDKAPKRAKPIKKAPKAEPLASKTLKTRPKKKTSGGGDS 251
S + +S+ D+ K P R + + P +P K RP +S DS
Sbjct: 259 SSSSSSDSDVSVKKPPRGRKPAEKPLPKPRGRKPKPERPPSSSSSDSDS 307
>gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]
Length = 3664
Score = 32.0 bits (71), Expect = 0.53
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 174 PSPGSLLDTIEDLGDDPALSLRSSTNPADSRTEASE------DDMGDKAPKRAKPIKKAP 227
P+PG+ E D S + + PA EA+E D D P + + AP
Sbjct: 1736 PTPGASFSQAESNVDPEPDSTQPLSKPAQKSEEANEPKAEKPDATADAEPDANQKAEAAP 1795
Query: 228 KAEPLASKTLKTRP 241
+++P AS+ L+ P
Sbjct: 1796 ESQPPASEDLEVDP 1809
>gi|153945728 microtubule-associated protein 1B [Homo sapiens]
Length = 2468
Score = 32.0 bits (71), Expect = 0.53
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 196 SSTNPADSRTEASEDDMGDKAPKRAKP--IKKAPKAEPLASKTLKTRPKKKTS 246
S P+ + E +E D PK AK +KK K +P K K +PKK+ +
Sbjct: 609 SKEEPSPVKAEVAEKQATDVKPKAAKEKTVKKETKVKPEDKKEEKEKPKKEVA 661
>gi|239753786 PREDICTED: hypothetical protein LOC100129786 [Homo
sapiens]
Length = 210
Score = 31.2 bits (69), Expect = 0.90
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 167 RPDGRLRPSPGSLLDTIEDLGDDPALSLRSSTNPADSRTEASEDDMGDKAPKRAKPIKKA 226
+P R R SPG+ E G+ P S+R PA S E+ + ++A +A
Sbjct: 45 KPTHRARESPGNPRRARESPGNQPTQSMREPRTPAQSTRESWKPTHAEQA--------RA 96
Query: 227 PKAEPL-ASKTLKTRPKKKT 245
P+ + AS++ RP + T
Sbjct: 97 PETDQRGASESPGNRPTQST 116
Score = 29.3 bits (64), Expect = 3.4
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 171 RLRPSPGSLLDTIEDLGDDPALSLRSSTNPADSRTEA-SEDDMGDKAPKRAKPIKKAPKA 229
R R SPG+ E G+ P S R PA S E+ ++P + +++P
Sbjct: 7 RARESPGNPRRARESPGNQPTQSTREPRTPAQSTRESWKPTHRARESPGNPRRARESPGN 66
Query: 230 EPLASKTLKTRPKKKT 245
+P S P + T
Sbjct: 67 QPTQSMREPRTPAQST 82
>gi|169167301 PREDICTED: hypothetical protein LOC100129786 [Homo
sapiens]
Length = 210
Score = 31.2 bits (69), Expect = 0.90
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 167 RPDGRLRPSPGSLLDTIEDLGDDPALSLRSSTNPADSRTEASEDDMGDKAPKRAKPIKKA 226
+P R R SPG+ E G+ P S+R PA S E+ + ++A +A
Sbjct: 45 KPTHRARESPGNPRRARESPGNQPTQSMREPRTPAQSTRESWKPTHAEQA--------RA 96
Query: 227 PKAEPL-ASKTLKTRPKKKT 245
P+ + AS++ RP + T
Sbjct: 97 PETDQRGASESPGNRPTQST 116
Score = 29.3 bits (64), Expect = 3.4
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 171 RLRPSPGSLLDTIEDLGDDPALSLRSSTNPADSRTEA-SEDDMGDKAPKRAKPIKKAPKA 229
R R SPG+ E G+ P S R PA S E+ ++P + +++P
Sbjct: 7 RARESPGNPRRARESPGNQPTQSTREPRTPAQSTRESWKPTHRARESPGNPRRARESPGN 66
Query: 230 EPLASKTLKTRPKKKT 245
+P S P + T
Sbjct: 67 QPTQSMREPRTPAQST 82
>gi|169166477 PREDICTED: hypothetical protein LOC100129786 [Homo
sapiens]
Length = 210
Score = 31.2 bits (69), Expect = 0.90
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 9/80 (11%)
Query: 167 RPDGRLRPSPGSLLDTIEDLGDDPALSLRSSTNPADSRTEASEDDMGDKAPKRAKPIKKA 226
+P R R SPG+ E G+ P S+R PA S E+ + ++A +A
Sbjct: 45 KPTHRARESPGNPRRARESPGNQPTQSMREPRTPAQSTRESWKPTHAEQA--------RA 96
Query: 227 PKAEPL-ASKTLKTRPKKKT 245
P+ + AS++ RP + T
Sbjct: 97 PETDQRGASESPGNRPTQST 116
Score = 29.3 bits (64), Expect = 3.4
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 171 RLRPSPGSLLDTIEDLGDDPALSLRSSTNPADSRTEA-SEDDMGDKAPKRAKPIKKAPKA 229
R R SPG+ E G+ P S R PA S E+ ++P + +++P
Sbjct: 7 RARESPGNPRRARESPGNQPTQSTREPRTPAQSTRESWKPTHRARESPGNPRRARESPGN 66
Query: 230 EPLASKTLKTRPKKKT 245
+P S P + T
Sbjct: 67 QPTQSMREPRTPAQST 82
>gi|247301334 non-protein coding RNA 153 isoform 3 [Homo sapiens]
Length = 540
Score = 30.8 bits (68), Expect = 1.2
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 11/113 (9%)
Query: 99 KEKEIDEYITQARDKSYETMMRVGK-RGLNLAANAAVTAAAKGVLSEKLRSFSMQDLTLI 157
K+ + + Q ++ +T V GLN+ + A T A + SE SFS
Sbjct: 435 KKATLQDNTNQTENRFQKTDASVSHLSGLNIGSGAFETKTANKIASEA--SFS------- 485
Query: 158 RDEDALPLQRPDGRLRPSPGSLLDTIEDLGDDPALSLRSSTNPADSRTEASED 210
+ PL R + + +P + + D DD + ++ P + T+ S+D
Sbjct: 486 -SSEGSPLSRHENKKKPVINLKSNALWDESDDSNSEIEAALRPRNHNTDDSDD 537
>gi|247301318 non-protein coding RNA 153 isoform 2 [Homo sapiens]
Length = 570
Score = 30.8 bits (68), Expect = 1.2
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 11/113 (9%)
Query: 99 KEKEIDEYITQARDKSYETMMRVGK-RGLNLAANAAVTAAAKGVLSEKLRSFSMQDLTLI 157
K+ + + Q ++ +T V GLN+ + A T A + SE SFS
Sbjct: 465 KKATLQDNTNQTENRFQKTDASVSHLSGLNIGSGAFETKTANKIASEA--SFS------- 515
Query: 158 RDEDALPLQRPDGRLRPSPGSLLDTIEDLGDDPALSLRSSTNPADSRTEASED 210
+ PL R + + +P + + D DD + ++ P + T+ S+D
Sbjct: 516 -SSEGSPLSRHENKKKPVINLKSNALWDESDDSNSEIEAALRPRNHNTDDSDD 567
>gi|118150654 non-protein coding RNA 153 isoform 1 [Homo sapiens]
Length = 673
Score = 30.8 bits (68), Expect = 1.2
Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 11/113 (9%)
Query: 99 KEKEIDEYITQARDKSYETMMRVGK-RGLNLAANAAVTAAAKGVLSEKLRSFSMQDLTLI 157
K+ + + Q ++ +T V GLN+ + A T A + SE SFS
Sbjct: 568 KKATLQDNTNQTENRFQKTDASVSHLSGLNIGSGAFETKTANKIASEA--SFS------- 618
Query: 158 RDEDALPLQRPDGRLRPSPGSLLDTIEDLGDDPALSLRSSTNPADSRTEASED 210
+ PL R + + +P + + D DD + ++ P + T+ S+D
Sbjct: 619 -SSEGSPLSRHENKKKPVINLKSNALWDESDDSNSEIEAALRPRNHNTDDSDD 670
>gi|151301171 RNA polymerase II transcription factor TAFII140 [Homo
sapiens]
Length = 929
Score = 30.8 bits (68), Expect = 1.2
Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 20/118 (16%)
Query: 151 MQDLTLIRDEDAL---PLQRPDG---------RLRPSPGSLLDTIEDLGDDPALSLRSST 198
+++ +I DE+ L PL P+ RL + G LD + +P S+ +
Sbjct: 164 LEEEEIINDENFLGKRPLDSPEAEELPAMKRPRLLSTKGDTLDVVLLEAREPLSSINTQK 223
Query: 199 NPADSRTEASEDDMGDKAPKRAKPIKKAP-------KAEPLASKTLKTRPKKKTSGGG 249
P + D D AP +P AP A+PL +K+ + K KTS G
Sbjct: 224 IPP-MLSPVHVQDSTDLAPPSPEPPMLAPVAKSQMPTAKPLETKSFTPKTKTKTSSPG 280
>gi|27894378 chloride intracellular channel 6 [Homo sapiens]
Length = 686
Score = 30.4 bits (67), Expect = 1.5
Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 30/106 (28%)
Query: 164 PLQRPDGRLRP---------------SPGSLLDTIEDLGDDPALSLRSSTNPADSRTEAS 208
P Q DG L P SPG L + + P + P D+R +A
Sbjct: 296 PQQSGDGSLSPQAEAIEVAAGESAGRSPGELAWDAAEEAEVPGVKGSEEAAPGDARADAG 355
Query: 209 EDDMGDKAPKRAKPIKKAPKAEPLASKTLKTR----PKKKTSGGGD 250
ED +GD P+ EP + + R P+++ + GG+
Sbjct: 356 EDRVGD-----------GPQQEPGEDEERRERSPEGPREEEAAGGE 390
>gi|148596949 nucleolar and coiled-body phosphoprotein 1 [Homo
sapiens]
Length = 699
Score = 30.0 bits (66), Expect = 2.0
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 196 SSTNPADSRTEASEDDMGDKAPKRAKPIKKAPKAEPLASKTLK--TRPKKKTSGGGDSA 252
+S++ + S + +S+D +KA A P K PK + +A +K T P +K+S DS+
Sbjct: 215 ASSSSSSSSSSSSDDSEEEKAA--ATPKKTVPKKQVVAKAPVKAATTPTRKSSSSEDSS 271
Score = 29.6 bits (65), Expect = 2.6
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Query: 194 LRSSTNPADSRTEASEDDMGDKAPKRAKPIKK--------APKAEPLASKTLKTRPKKK 244
++++T P ++ +SED D+ ++ KP+K P + P K+L T+P KK
Sbjct: 254 VKAATTPT-RKSSSSEDSSSDEEEEQKKPMKNKPGPYSSVPPPSAPPPKKSLGTQPPKK 311
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 30.0 bits (66), Expect = 2.0
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 165 LQRPDGRLRPSPGSLLDTI--EDLGD-DPALSLRSSTNPADSRTEASEDDM--GDKAPKR 219
L+ P GR+ P+ L DT+ + LG DP +L + P S D G P+
Sbjct: 4351 LEPPPGRVSPAAAQLADTLFSKGLGPWDPPDNLAETQKPEQSSLVPGHLDQVNGQVVPEA 4410
Query: 220 AK-PIKKAPKAEPLA 233
++ IK+ P+ EP A
Sbjct: 4411 SQLSIKQEPREEPCA 4425
>gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens]
Length = 2608
Score = 30.0 bits (66), Expect = 2.0
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
Query: 167 RPDGRLRPSPGSLLDTIEDLGDDPALSLRSSTNPADSRTEASEDDMGDK----------- 215
R +G PS G+ +E P PA E ED++G +
Sbjct: 1187 REEGEQGPSSGASSQVLEQRAGSPGALEDEGEQPAPEEDELEEDELGQQSMEDSEEDCGG 1246
Query: 216 APKRAKPIKKAPKAEPLASKTL 237
AP + P + P + L + T+
Sbjct: 1247 APDNSHPPRALPGLDALVAATI 1268
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.132 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,151,386
Number of Sequences: 37866
Number of extensions: 384533
Number of successful extensions: 1732
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 1644
Number of HSP's gapped (non-prelim): 131
length of query: 252
length of database: 18,247,518
effective HSP length: 100
effective length of query: 152
effective length of database: 14,460,918
effective search space: 2198059536
effective search space used: 2198059536
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.