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Search of human proteins with 41350335
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|41350335 transcription elongation factor A (SII), 3 [Homo
sapiens]
(348 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|41350335 transcription elongation factor A (SII), 3 [Homo sap... 701 0.0
gi|4507385 transcription elongation factor A protein 2 isoform a... 343 2e-94
gi|5803191 transcription elongation factor A 1 isoform 1 [Homo s... 339 2e-93
gi|239749424 PREDICTED: hypothetical protein XP_002347041 [Homo ... 323 2e-88
gi|38505156 transcription elongation factor A protein 2 isoform ... 309 3e-84
gi|45439355 transcription elongation factor A 1 isoform 2 [Homo ... 304 7e-83
gi|154146187 TFIIS central domain-containing protein 1 [Homo sap... 137 2e-32
gi|7662018 PHD finger protein 3 [Homo sapiens] 69 5e-12
gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens] 59 5e-09
gi|71044477 death inducer-obliterator 1 isoform b [Homo sapiens] 59 5e-09
gi|28558977 mediator complex subunit 26 [Homo sapiens] 50 4e-06
gi|208022641 elongin A [Homo sapiens] 50 4e-06
gi|7706499 DNA directed RNA polymerase III polypeptide K [Homo s... 49 7e-06
gi|38373682 pleckstrin homology domain containing family G membe... 43 5e-04
gi|111154084 pleckstrin homology domain containing family G memb... 43 5e-04
gi|111154088 pleckstrin homology domain containing family G memb... 43 5e-04
gi|111154080 pleckstrin homology domain containing family G memb... 43 5e-04
gi|111154078 pleckstrin homology domain containing family G memb... 43 5e-04
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot... 42 0.001
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot... 42 0.001
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi... 42 0.001
gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap... 42 0.001
gi|23308505 hypothetical protein LOC127428 [Homo sapiens] 41 0.001
gi|47271475 SPOC domain containing 1 [Homo sapiens] 41 0.001
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 40 0.002
gi|8923106 zinc finger, CCHC domain containing 10 [Homo sapiens] 40 0.003
gi|53692189 adipocyte enhancer binding protein 1 precursor [Homo... 40 0.004
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot... 40 0.004
gi|169166499 PREDICTED: similar to ribonucleic acid binding prot... 40 0.004
gi|113415498 PREDICTED: similar to ribonucleic acid binding prot... 40 0.004
>gi|41350335 transcription elongation factor A (SII), 3 [Homo
sapiens]
Length = 348
Score = 701 bits (1808), Expect = 0.0
Identities = 348/348 (100%), Positives = 348/348 (100%)
Query: 1 MGQEEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCS 60
MGQEEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCS
Sbjct: 1 MGQEEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCS 60
Query: 61 DKEVVSLAKVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKK 120
DKEVVSLAKVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKK
Sbjct: 61 DKEVVSLAKVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKK 120
Query: 121 REDPKTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPC 180
REDPKTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPC
Sbjct: 121 REDPKTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPC 180
Query: 181 YLTGDSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRS 240
YLTGDSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRS
Sbjct: 181 YLTGDSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRS 240
Query: 241 RISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKT 300
RISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKT
Sbjct: 241 RISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKT 300
Query: 301 GGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 348
GGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC
Sbjct: 301 GGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 348
>gi|4507385 transcription elongation factor A protein 2 isoform a
[Homo sapiens]
Length = 299
Score = 343 bits (879), Expect = 2e-94
Identities = 179/348 (51%), Positives = 244/348 (70%), Gaps = 50/348 (14%)
Query: 1 MGQEEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCS 60
MG+EEE+ RIA++L+KMV +K+ EGA+DLL++L + +++ LLQ+TR+G++VN +RK S
Sbjct: 2 MGKEEEIARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQSS 61
Query: 61 DKEVVSLAKVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKK 120
D+EV++LAK LIK+WK+LLD+ AK +E+G G+ P
Sbjct: 62 DEEVIALAKSLIKSWKKLLDA------------SDAKARERG---------RGMPLPTSS 100
Query: 121 REDPKTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPC 180
R+ AS +P + S+ + E P+ PS+P TF P
Sbjct: 101 RD--------------ASEAP--------DPSRKRPELPRAPSTPRITTFP-------PV 131
Query: 181 YLTGDSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRS 240
+T D+VR+KC EML+AAL+ D D+ G +C++++++IE+ I++++ +TDMKY+NRVRS
Sbjct: 132 PVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRS 191
Query: 241 RISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKT 300
RISNLKD +NP LRRNVL GAI+ IA MT+EEMASDEL+E+R AMT+EAIREHQMA+T
Sbjct: 192 RISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMART 251
Query: 301 GGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 348
GGT TDLF C KC+KKNCTY QVQTRS+DEPMTTFV+CNECGNRWKFC
Sbjct: 252 GGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC 299
>gi|5803191 transcription elongation factor A 1 isoform 1 [Homo
sapiens]
Length = 301
Score = 339 bits (869), Expect = 2e-93
Identities = 182/345 (52%), Positives = 230/345 (66%), Gaps = 45/345 (13%)
Query: 4 EEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCSDKE 63
E+E++R AKK++KMV +KN GALDLLK+L + M+++LLQ+TRIG++VN +RK +D+E
Sbjct: 2 EDEVVRFAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEE 61
Query: 64 VVSLAKVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKKRED 123
V SLAK LIK+WK+LLD P K +++E A + E + E+ S R+D
Sbjct: 62 VTSLAKSLIKSWKKLLDGPSTEKDLDEKKKEPAITSQNSPEA---REESTSSGNVSNRKD 118
Query: 124 PKTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPCYLT 183
RD+ SS P+ PS T
Sbjct: 119 ETNARDTY-----VSSFPRAPS-------------------------------------T 136
Query: 184 GDSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRSRIS 243
DSVR KC EML+AAL+ DDY G + +++ S+IE+ IYQE+++TDMKY+NRVRSRIS
Sbjct: 137 SDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRIS 196
Query: 244 NLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGT 303
NLKD +NP LR+NVL G I L A+MTAEEMASDEL+E+R +T+EAIREHQMAKTGGT
Sbjct: 197 NLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGT 256
Query: 304 TTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 348
TDLF C KCKKKNCTY QVQTRSADEPMTTFV+CNECGNRWKFC
Sbjct: 257 QTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 301
>gi|239749424 PREDICTED: hypothetical protein XP_002347041 [Homo
sapiens]
Length = 287
Score = 323 bits (827), Expect = 2e-88
Identities = 175/332 (52%), Positives = 218/332 (65%), Gaps = 45/332 (13%)
Query: 17 MVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWK 76
MV +KN GALDLLK+L + M+++LLQ+TRIG++VN +RK +D+EV SLAK LIK+WK
Sbjct: 1 MVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWK 60
Query: 77 RLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKKREDPKTRRDSVDSKSS 136
+LLD P K +++E A + E + E+ S R+D RD+
Sbjct: 61 KLLDGPSTEKDLDEKKKEPAITSQNSPEA---REESTSSGNVSNRKDETNARDTY----- 112
Query: 137 ASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPCYLTGDSVRDKCVEMLS 196
SS P+ PS T DSVR KC EML+
Sbjct: 113 VSSFPRAPS-------------------------------------TSDSVRLKCREMLA 135
Query: 197 AALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRN 256
AAL+ DDY G + +++ S+IE+ IYQE+++TDMKY+NRVRSRISNLKD +NP LR+N
Sbjct: 136 AALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKN 195
Query: 257 VLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKK 316
VL G I L A+MTAEEMASDEL+E+R +T+EAIREHQMAKTGGT TDLF C KCKKK
Sbjct: 196 VLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKK 255
Query: 317 NCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 348
NCTY QVQTRSADEPMTTFV+CNECGNRWKFC
Sbjct: 256 NCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 287
>gi|38505156 transcription elongation factor A protein 2 isoform b
[Homo sapiens]
Length = 272
Score = 309 bits (791), Expect = 3e-84
Identities = 163/322 (50%), Positives = 221/322 (68%), Gaps = 50/322 (15%)
Query: 27 LDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRLLDSPGPPK 86
+DLL++L + +++ LLQ+TR+G++VN +RK SD+EV++LAK LIK+WK+LLD+
Sbjct: 1 MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLLDA----- 55
Query: 87 GEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKKREDPKTRRDSVDSKSSASSSPKRPSV 146
AK +E+G G+ P R+ AS +P
Sbjct: 56 -------SDAKARERG---------RGMPLPTSSRD--------------ASEAP----- 80
Query: 147 ERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPCYLTGDSVRDKCVEMLSAALKADDDYK 206
+ S+ + E P+ PS+P TF P +T D+VR+KC EML+AAL+ D D+
Sbjct: 81 ---DPSRKRPELPRAPSTPRITTFP-------PVPVTCDAVRNKCREMLTAALQTDHDHV 130
Query: 207 DYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGL 266
G +C++++++IE+ I++++ +TDMKY+NRVRSRISNLKD +NP LRRNVL GAI+
Sbjct: 131 AIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQ 190
Query: 267 IAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGTTTDLFQCSKCKKKNCTYNQVQTR 326
IA MT+EEMASDEL+E+R AMT+EAIREHQMA+TGGT TDLF C KC+KKNCTY QVQTR
Sbjct: 191 IAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTR 250
Query: 327 SADEPMTTFVLCNECGNRWKFC 348
S+DEPMTTFV+CNECGNRWKFC
Sbjct: 251 SSDEPMTTFVVCNECGNRWKFC 272
>gi|45439355 transcription elongation factor A 1 isoform 2 [Homo
sapiens]
Length = 280
Score = 304 bits (779), Expect = 7e-83
Identities = 170/345 (49%), Positives = 213/345 (61%), Gaps = 66/345 (19%)
Query: 4 EEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCSDKE 63
E+E++R AKK++KMV +KN +TRIG++VN +RK +D+E
Sbjct: 2 EDEVVRFAKKMDKMVQKKNA---------------------STRIGMSVNAIRKQSTDEE 40
Query: 64 VVSLAKVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKKRED 123
V SLAK LIK+WK+LLD P K +++E A + E + E+ S R+D
Sbjct: 41 VTSLAKSLIKSWKKLLDGPSTEKDLDEKKKEPAITSQNSPEA---REESTSSGNVSNRKD 97
Query: 124 PKTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPCYLT 183
RD+ SS P+ PS T
Sbjct: 98 ETNARDTY-----VSSFPRAPS-------------------------------------T 115
Query: 184 GDSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRSRIS 243
DSVR KC EML+AAL+ DDY G + +++ S+IE+ IYQE+++TDMKY+NRVRSRIS
Sbjct: 116 SDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRIS 175
Query: 244 NLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGT 303
NLKD +NP LR+NVL G I L A+MTAEEMASDEL+E+R +T+EAIREHQMAKTGGT
Sbjct: 176 NLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGT 235
Query: 304 TTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC 348
TDLF C KCKKKNCTY QVQTRSADEPMTTFV+CNECGNRWKFC
Sbjct: 236 QTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC 280
>gi|154146187 TFIIS central domain-containing protein 1 [Homo
sapiens]
Length = 381
Score = 137 bits (344), Expect = 2e-32
Identities = 106/361 (29%), Positives = 171/361 (47%), Gaps = 34/361 (9%)
Query: 1 MGQEEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCS 60
M + ++ A +E++++++N E + L +L + ++ + LQ T + AV V K+C
Sbjct: 31 MSDKNQIAARASLIEQLMSKRNFEDLGNHLTELETIYVTKEHLQETDVVRAVYRVLKNCP 90
Query: 61 DKEVVSLAKVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPE-AGLS-PPR 118
+ AK L+ WK + + KA+ K K E +G S P
Sbjct: 91 SVALKKKAKCLLSKWKAVYK----------QTHSKARNSPKLFPVRGNKEENSGPSHDPS 140
Query: 119 KKREDPKTRRDSVDSKSSASSSPKRPSVERSNSSKSKAE--SPKTPSSPLTPTFASSMCL 176
+ +S+ S+ A S R+ K K E P S T S L
Sbjct: 141 QNETLGICSSNSLSSQDVAKLSEMIVPENRAIQLKPKEEHFGDGDPES----TGKRSSEL 196
Query: 177 LAPCYLTGDSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRN 236
L P +R KC+E+L AAL + + A EIE+H++ KY+
Sbjct: 197 LDPT----TPMRTKCIELLYAALTSSSTDQPKADLWQNFAREIEEHVFTLYSKNIKKYKT 252
Query: 237 RVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQ 296
+RS+++NLK+PRN L++N+LSG S A+MT EMA+ EL++LR + T+ I+EH
Sbjct: 253 CIRSKVANLKNPRNSHLQQNLLSGTTSPREFAEMTVMEMANKELKQLRASYTESCIQEHY 312
Query: 297 MAKT-GGTTTDLFQCSKCKKKNCTY-----------NQVQTRSADEPMTTFVLCNECGNR 344
+ + GT T+ +C +C+K NC + V+ + DE M T+V+CNECG +
Sbjct: 313 LPQVIDGTQTNKIKCRRCEKYNCKVTVIDRGTLFLPSWVRNSNPDEQMMTYVICNECGEQ 372
Query: 345 W 345
W
Sbjct: 373 W 373
>gi|7662018 PHD finger protein 3 [Homo sapiens]
Length = 2039
Score = 69.3 bits (168), Expect = 5e-12
Identities = 55/214 (25%), Positives = 96/214 (44%), Gaps = 5/214 (2%)
Query: 86 KGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKKREDPKTRRDSVDSKSSASSSPKRPS 145
K E GE R + ++ ++ P + P R + + + + +S+ + +
Sbjct: 831 KRESGEGRNSSDCRDNEIKKWQLAPLRKMGQPVLPRRSSEEKSEKIPKESTTVTCTGEKA 890
Query: 146 VERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPCYLTGDSVRDKCVEMLSAALKADDDY 205
+ K + + K L A+S + + SVR ++L L D +
Sbjct: 891 SKPGTHEKQEMKKKKVEKGVLNVHPAASASKPSADQIR-QSVRHSLKDILMKRL-TDSNL 948
Query: 206 KDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAG 265
K K+A++IE ++ + TD KY+N+ RS + NLKDP+N L + VL G ++
Sbjct: 949 KVPEEKAAKVATKIEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPD 1008
Query: 266 LIAKMTAEEMASDEL---RELRNAMTQEAIREHQ 296
+ +M+ EE+AS EL R N T E I + Q
Sbjct: 1009 HLIRMSPEELASKELAAWRRRENRHTIEMIEKEQ 1042
>gi|71044479 death inducer-obliterator 1 isoform c [Homo sapiens]
Length = 2240
Score = 59.3 bits (142), Expect = 5e-09
Identities = 60/240 (25%), Positives = 91/240 (37%), Gaps = 21/240 (8%)
Query: 82 PGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKKREDPKTRRDSVDSKSSASSSP 141
PG G++ R KK + P P K PK S S AS++
Sbjct: 553 PGSAVGKQPAPRNLVPKKSSFANVAAATPAIKKPPSGFKGTIPKRPWLSATPSSGASAAR 612
Query: 142 KRPSVERSNSSKSK-----------AESPKTPSSPLTPTF-----ASSMCLLAPCYLTGD 185
+ + ++ SK P PS P+ A S P
Sbjct: 613 QAGPAPAAATAASKKFPGSAALVGAVRKPVVPSVPMASPAPGRLGAMSAAPSQPNSQIRQ 672
Query: 186 SVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRSRISNL 245
++R E+L + DD K+A IE ++ + TD +Y+++ RS + NL
Sbjct: 673 NIRRSLKEILWKRVNDSDDLIMTENEVGKIALHIEKEMFNLFQVTDNRYKSKYRSIMFNL 732
Query: 246 KDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDEL-----RELRNAMTQEAIREHQMAKT 300
KDP+N GL VL IS + ++ EE+ S EL R R+ M ++ KT
Sbjct: 733 KDPKNQGLFHRVLREEISLAKLVRLKPEELVSKELSTWKERPARSVMESRTKLHNESKKT 792
>gi|71044477 death inducer-obliterator 1 isoform b [Homo sapiens]
Length = 1189
Score = 59.3 bits (142), Expect = 5e-09
Identities = 60/240 (25%), Positives = 91/240 (37%), Gaps = 21/240 (8%)
Query: 82 PGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKKREDPKTRRDSVDSKSSASSSP 141
PG G++ R KK + P P K PK S S AS++
Sbjct: 553 PGSAVGKQPAPRNLVPKKSSFANVAAATPAIKKPPSGFKGTIPKRPWLSATPSSGASAAR 612
Query: 142 KRPSVERSNSSKSK-----------AESPKTPSSPLTPTF-----ASSMCLLAPCYLTGD 185
+ + ++ SK P PS P+ A S P
Sbjct: 613 QAGPAPAAATAASKKFPGSAALVGAVRKPVVPSVPMASPAPGRLGAMSAAPSQPNSQIRQ 672
Query: 186 SVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRSRISNL 245
++R E+L + DD K+A IE ++ + TD +Y+++ RS + NL
Sbjct: 673 NIRRSLKEILWKRVNDSDDLIMTENEVGKIALHIEKEMFNLFQVTDNRYKSKYRSIMFNL 732
Query: 246 KDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDEL-----RELRNAMTQEAIREHQMAKT 300
KDP+N GL VL IS + ++ EE+ S EL R R+ M ++ KT
Sbjct: 733 KDPKNQGLFHRVLREEISLAKLVRLKPEELVSKELSTWKERPARSVMESRTKLHNESKKT 792
>gi|28558977 mediator complex subunit 26 [Homo sapiens]
Length = 600
Score = 49.7 bits (117), Expect = 4e-06
Identities = 31/127 (24%), Positives = 61/127 (48%), Gaps = 14/127 (11%)
Query: 9 RIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLA 68
R+ + ++ +N L+++ L ++ + L+ TR+G +N VRK ++E+ A
Sbjct: 14 RLLQAIDPQSNIRNMVAVLEVISSLEKYPITKEALEETRLGKLINDVRKKTKNEELAKRA 73
Query: 69 KVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECS------DWKPEAGLSPPRKKRE 122
K L+++W++L+ E + E A + G S + +PE G + P +
Sbjct: 74 KKLLRSWQKLI--------EPAHQHEAALRGLAGATGSANGGAHNCRPEVGAAGPPRSIH 125
Query: 123 DPKTRRD 129
D K+R D
Sbjct: 126 DLKSRND 132
>gi|208022641 elongin A [Homo sapiens]
Length = 798
Score = 49.7 bits (117), Expect = 4e-06
Identities = 44/173 (25%), Positives = 75/173 (43%), Gaps = 19/173 (10%)
Query: 5 EELLRIAKKLE-KMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCSDKE 63
E L++ +KL+ ++ A + + L LKKL + +++ +L T +G VN +RKH +
Sbjct: 30 ESALQVVEKLQARLAANPDPKKLLKYLKKLSTLPITVDILAETGVGKTVNSLRKH---EH 86
Query: 64 VVSLAKVLIKNWKRLLD-----SPGPPKGEKGEEREK---AKKKEKGLE---CSDWKPEA 112
V S A+ L+ WK+L+ P EK R++ A +KE+ +E WK
Sbjct: 87 VGSFARDLVAQWKKLVPVERNAEPDEQDFEKSNSRKRPRDALQKEEEMEGDYQETWKATG 146
Query: 113 GLSPPRKKREDPKTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSP 165
S R+ + ++ S +R R + SP S P
Sbjct: 147 SRSYSPDHRQKKHRKLSELERPHKVSHGHER----RDERKRCHRMSPTYSSDP 195
>gi|7706499 DNA directed RNA polymerase III polypeptide K [Homo
sapiens]
Length = 108
Score = 48.9 bits (115), Expect = 7e-06
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 310 CSKCKKKNCTYNQVQTRSADEPMTTFVLC--NECGNRWK 346
C KC+ + Q+QTRSADEPMTTF C +CG+RW+
Sbjct: 69 CPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWR 107
>gi|38373682 pleckstrin homology domain containing family G member 5
isoform a [Homo sapiens]
Length = 1006
Score = 42.7 bits (99), Expect = 5e-04
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 11/135 (8%)
Query: 81 SPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKKREDPKTRRDSVDSKSSASSS 140
+P P G++G+ E+ K K L +P AG PP +R D ++RR+S+D +
Sbjct: 147 APAKP-GDEGKV-EQGMKDSKSLSLPILRP-AGTGPPALERVDAQSRRESLDILA----- 198
Query: 141 PKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPCYLTGDSVRDKCVEMLSAALK 200
P R N S+ E+ P TP+ S + TGDS +++ S
Sbjct: 199 ---PGRRRKNMSEFLGEASIPGQEPPTPSSCSLPSGSSGSTNTGDSWKNRAASRFSGFFS 255
Query: 201 ADDDYKDYGVNCDKM 215
+ +G DKM
Sbjct: 256 SGPSTSAFGREVDKM 270
>gi|111154084 pleckstrin homology domain containing family G member
5 isoform b [Homo sapiens]
Length = 1083
Score = 42.7 bits (99), Expect = 5e-04
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 11/135 (8%)
Query: 81 SPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKKREDPKTRRDSVDSKSSASSS 140
+P P G++G+ E+ K K L +P AG PP +R D ++RR+S+D +
Sbjct: 224 APAKP-GDEGKV-EQGMKDSKSLSLPILRP-AGTGPPALERVDAQSRRESLDILA----- 275
Query: 141 PKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPCYLTGDSVRDKCVEMLSAALK 200
P R N S+ E+ P TP+ S + TGDS +++ S
Sbjct: 276 ---PGRRRKNMSEFLGEASIPGQEPPTPSSCSLPSGSSGSTNTGDSWKNRAASRFSGFFS 332
Query: 201 ADDDYKDYGVNCDKM 215
+ +G DKM
Sbjct: 333 SGPSTSAFGREVDKM 347
>gi|111154088 pleckstrin homology domain containing family G member
5 isoform a [Homo sapiens]
Length = 1006
Score = 42.7 bits (99), Expect = 5e-04
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 11/135 (8%)
Query: 81 SPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKKREDPKTRRDSVDSKSSASSS 140
+P P G++G+ E+ K K L +P AG PP +R D ++RR+S+D +
Sbjct: 147 APAKP-GDEGKV-EQGMKDSKSLSLPILRP-AGTGPPALERVDAQSRRESLDILA----- 198
Query: 141 PKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPCYLTGDSVRDKCVEMLSAALK 200
P R N S+ E+ P TP+ S + TGDS +++ S
Sbjct: 199 ---PGRRRKNMSEFLGEASIPGQEPPTPSSCSLPSGSSGSTNTGDSWKNRAASRFSGFFS 255
Query: 201 ADDDYKDYGVNCDKM 215
+ +G DKM
Sbjct: 256 SGPSTSAFGREVDKM 270
>gi|111154080 pleckstrin homology domain containing family G member
5 isoform a [Homo sapiens]
Length = 1006
Score = 42.7 bits (99), Expect = 5e-04
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 11/135 (8%)
Query: 81 SPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKKREDPKTRRDSVDSKSSASSS 140
+P P G++G+ E+ K K L +P AG PP +R D ++RR+S+D +
Sbjct: 147 APAKP-GDEGKV-EQGMKDSKSLSLPILRP-AGTGPPALERVDAQSRRESLDILA----- 198
Query: 141 PKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPCYLTGDSVRDKCVEMLSAALK 200
P R N S+ E+ P TP+ S + TGDS +++ S
Sbjct: 199 ---PGRRRKNMSEFLGEASIPGQEPPTPSSCSLPSGSSGSTNTGDSWKNRAASRFSGFFS 255
Query: 201 ADDDYKDYGVNCDKM 215
+ +G DKM
Sbjct: 256 SGPSTSAFGREVDKM 270
>gi|111154078 pleckstrin homology domain containing family G member
5 isoform c [Homo sapiens]
Length = 1062
Score = 42.7 bits (99), Expect = 5e-04
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 11/135 (8%)
Query: 81 SPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKKREDPKTRRDSVDSKSSASSS 140
+P P G++G+ E+ K K L +P AG PP +R D ++RR+S+D +
Sbjct: 203 APAKP-GDEGKV-EQGMKDSKSLSLPILRP-AGTGPPALERVDAQSRRESLDILA----- 254
Query: 141 PKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPCYLTGDSVRDKCVEMLSAALK 200
P R N S+ E+ P TP+ S + TGDS +++ S
Sbjct: 255 ---PGRRRKNMSEFLGEASIPGQEPPTPSSCSLPSGSSGSTNTGDSWKNRAASRFSGFFS 311
Query: 201 ADDDYKDYGVNCDKM 215
+ +G DKM
Sbjct: 312 SGPSTSAFGREVDKM 326
>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 6 [Homo sapiens]
Length = 305
Score = 41.6 bits (96), Expect = 0.001
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 66 SLAKVLIKNWKRLLDSPGPPKG-EKGEEREKAKKKEKGLECSDWKPEAGLSPPRKKREDP 124
SL V N K +P P K ++ +E+ K + K+KG + + G RK+R
Sbjct: 10 SLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSAS 69
Query: 125 KTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASS 173
+ SS SSS S S+ S S + S ++ SS + + +SS
Sbjct: 70 SGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSS 118
>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 2 [Homo sapiens]
Length = 305
Score = 41.6 bits (96), Expect = 0.001
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 66 SLAKVLIKNWKRLLDSPGPPKG-EKGEEREKAKKKEKGLECSDWKPEAGLSPPRKKREDP 124
SL V N K +P P K ++ +E+ K + K+KG + + G RK+R
Sbjct: 10 SLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSAS 69
Query: 125 KTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASS 173
+ SS SSS S S+ S S + S ++ SS + + +SS
Sbjct: 70 SGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSS 118
>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 41.6 bits (96), Expect = 0.001
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 66 SLAKVLIKNWKRLLDSPGPPKG-EKGEEREKAKKKEKGLECSDWKPEAGLSPPRKKREDP 124
SL V N K +P P K ++ +E+ K + K+KG + + G RK+R
Sbjct: 10 SLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSAS 69
Query: 125 KTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASS 173
+ SS SSS S S+ S S + S ++ SS + + +SS
Sbjct: 70 SGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSS 118
>gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 41.6 bits (96), Expect = 0.001
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Query: 66 SLAKVLIKNWKRLLDSPGPPKG-EKGEEREKAKKKEKGLECSDWKPEAGLSPPRKKREDP 124
SL V N K +P P K ++ +E+ K + K+KG + + G RK+R
Sbjct: 10 SLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSAS 69
Query: 125 KTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASS 173
+ SS SSS S S+ S S + S ++ SS + + +SS
Sbjct: 70 SGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSS 118
>gi|23308505 hypothetical protein LOC127428 [Homo sapiens]
Length = 208
Score = 41.2 bits (95), Expect = 0.001
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 24 EGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWK 76
E ++ L++L S ++L++TRIG VN +RKH SD EV SLA+ + WK
Sbjct: 57 ENLVEALQELKKKIPSREVLKSTRIGHTVNKMRKH-SDSEVASLAREVYTEWK 108
>gi|47271475 SPOC domain containing 1 [Homo sapiens]
Length = 1216
Score = 41.2 bits (95), Expect = 0.001
Identities = 21/71 (29%), Positives = 42/71 (59%)
Query: 215 MASEIEDHIYQELKSTDMKYRNRVRSRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEE 274
+A+ IE ++ + T+ +Y+ + RS + NL+DPRN L V+ G ++ + +M++ +
Sbjct: 640 IAAGIEAALWDLTQGTNGRYKTKYRSLLFNLRDPRNLDLFLKVVHGDVTPYDLVRMSSMQ 699
Query: 275 MASDELRELRN 285
+A EL R+
Sbjct: 700 LAPQELARWRD 710
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 40.4 bits (93), Expect = 0.002
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 14/122 (11%)
Query: 29 LLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNWKRLLDSPGPPKGE 88
+L L +++ L+ V + K D+E+ LA VL+ +W ++ S
Sbjct: 94 ILLTLQHLPLTVDHLKQNNTAKLVKQLSKSSEDEELRKLASVLVSDWMAVIRS---QSST 150
Query: 89 KGEEREKAKKKEKGLECSDWKPEAGLS----------PPRKKREDPKTRRDSVDSKSSAS 138
+ E++K K+K++G + PE L+ P KKRE PK+ R + S +
Sbjct: 151 QPAEKDKKKRKDEG-KSRTTLPERPLTEVKAETRAEEAPEKKREKPKSLRTTAPSHAKFR 209
Query: 139 SS 140
S+
Sbjct: 210 ST 211
>gi|8923106 zinc finger, CCHC domain containing 10 [Homo sapiens]
Length = 170
Score = 40.0 bits (92), Expect = 0.003
Identities = 48/169 (28%), Positives = 73/169 (43%), Gaps = 15/169 (8%)
Query: 10 IAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCS-DKEVVSLA 68
+A + +++AR+ E K+ CQ ++ T G RK+ L
Sbjct: 1 MATPMHRLIARRQAEAN----KQHVRCQKCLEFGHWT---YECTGKRKYLHRPSRTAELK 53
Query: 69 KVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGL-ECSDWKPEAGLSPPRKKREDPKTR 127
K L + RLL GE ER+ KK+ K + S ++ S + E+ T
Sbjct: 54 KALKEKENRLLLQQSI--GETNVERKAKKKRSKSVTSSSSSSSDSSASDSSSESEETSTS 111
Query: 128 RDSVDS---KSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASS 173
S DS +SS+SSS S S+SS S ++S + SS T T +SS
Sbjct: 112 SSSEDSDTDESSSSSSSSASSTTSSSSSDSDSDSSSSSSSS-TSTDSSS 159
>gi|53692189 adipocyte enhancer binding protein 1 precursor [Homo
sapiens]
Length = 1158
Score = 39.7 bits (91), Expect = 0.004
Identities = 43/182 (23%), Positives = 70/182 (38%), Gaps = 14/182 (7%)
Query: 84 PPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRK-KREDPKTRRDSVDSKSSASSSPK 142
PP EK +++ K KK+KG + E PP+K K + PK + + A+ PK
Sbjct: 86 PP--EKTKDKGKKGKKDKGPKVPKESLEGSPRPPKKGKEKPPKATKKPKEKPPKATKKPK 143
Query: 143 R--PSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAPCYLTGDSVRDKCVEMLSAALK 200
P + K + K PS P A S L P ++ + A L
Sbjct: 144 EKPPKATKKPKEKPPKATKKPPSGKRPPILAPSETLEWPLPPPPSPGPEELPQEGGAPL- 202
Query: 201 ADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRSR-------ISNLKDPRNPGL 253
+++++ G A E + +E + + Y +++ I K PR P
Sbjct: 203 -SNNWQNPGEETHVEAREHQPEPEEETEQPTLDYNDQIEREDYEDFEYIRRQKQPRPPPS 261
Query: 254 RR 255
RR
Sbjct: 262 RR 263
>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 39.7 bits (91), Expect = 0.004
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 66 SLAKVLIKNWKRLLDSPGPPKG-EKGEEREKAKKKEKGLECSDWKPEAGLSPPRKKREDP 124
SL V N K +P P K ++ +E+ K + K+KG + + G RK+
Sbjct: 10 SLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSAS 69
Query: 125 KTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASS 173
+ SS SSS S S+ S S + S ++ SS + + +SS
Sbjct: 70 SGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSS 118
>gi|169166499 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 39.7 bits (91), Expect = 0.004
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 66 SLAKVLIKNWKRLLDSPGPPKG-EKGEEREKAKKKEKGLECSDWKPEAGLSPPRKKREDP 124
SL V N K +P P K ++ +E+ K + K+KG + + G RK+
Sbjct: 10 SLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSAS 69
Query: 125 KTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASS 173
+ SS SSS S S+ S S + S ++ SS + + +SS
Sbjct: 70 SGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSS 118
>gi|113415498 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 39.7 bits (91), Expect = 0.004
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 1/109 (0%)
Query: 66 SLAKVLIKNWKRLLDSPGPPKG-EKGEEREKAKKKEKGLECSDWKPEAGLSPPRKKREDP 124
SL V N K +P P K ++ +E+ K + K+KG + + G RK+
Sbjct: 10 SLLGVKENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSAS 69
Query: 125 KTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASS 173
+ SS SSS S S+ S S + S ++ SS + + +SS
Sbjct: 70 SGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSS 118
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.127 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,083,789
Number of Sequences: 37866
Number of extensions: 679004
Number of successful extensions: 5831
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 326
Number of HSP's that attempted gapping in prelim test: 4829
Number of HSP's gapped (non-prelim): 1193
length of query: 348
length of database: 18,247,518
effective HSP length: 103
effective length of query: 245
effective length of database: 14,347,320
effective search space: 3515093400
effective search space used: 3515093400
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.