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Search of human proteins with 41281591
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|41281591 muscleblind-like 1 isoform a [Homo sapiens]
(382 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|41281591 muscleblind-like 1 isoform a [Homo sapiens] 776 0.0
gi|46411164 muscleblind-like 1 isoform b [Homo sapiens] 743 0.0
gi|46411166 muscleblind-like 1 isoform c [Homo sapiens] 732 0.0
gi|46411174 muscleblind-like 1 isoform g [Homo sapiens] 680 0.0
gi|46411172 muscleblind-like 1 isoform f [Homo sapiens] 576 e-164
gi|46411170 muscleblind-like 1 isoform e [Homo sapiens] 566 e-161
gi|21464125 muscleblind-like 2 isoform 1 [Homo sapiens] 556 e-159
gi|46411168 muscleblind-like 1 isoform d [Homo sapiens] 533 e-152
gi|46411180 muscleblind-like 2 isoform 3 [Homo sapiens] 481 e-136
gi|19387844 muscleblind-like 3 isoform G [Homo sapiens] 480 e-135
gi|30315649 muscleblind-like 3 isoform R [Homo sapiens] 444 e-125
gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens] 46 5e-05
gi|14249452 zinc finger CCCH-type containing 10 [Homo sapiens] 44 2e-04
gi|193788659 cleavage and polyadenylation specific factor 4-like... 44 3e-04
gi|91208418 transcription elongation regulator 1 isoform 2 [Homo... 39 0.010
gi|21327715 transcription elongation regulator 1 isoform 1 [Homo... 39 0.010
gi|4507961 zinc finger protein 36, C3H type, homolog [Homo sapiens] 37 0.023
gi|239747212 PREDICTED: hypothetical protein XP_002346939 [Homo ... 37 0.030
gi|41349472 PR domain containing 16 isoform 2 [Homo sapiens] 37 0.030
gi|41349470 PR domain containing 16 isoform 1 [Homo sapiens] 37 0.030
gi|24308458 Lix1 homolog (mouse) like [Homo sapiens] 37 0.030
gi|5032243 makorin ring finger protein 3 [Homo sapiens] 37 0.030
gi|125987603 cleavage and polyadenylation specific factor 4, 30k... 37 0.039
gi|5729939 cleavage and polyadenylation specific factor 4, 30kDa... 37 0.039
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 36 0.051
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 36 0.051
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 36 0.051
gi|13540521 basic helix-loop-helix domain containing, class B, 3... 36 0.051
gi|28872796 CCAAT/enhancer binding protein beta [Homo sapiens] 36 0.066
gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein ... 36 0.066
>gi|41281591 muscleblind-like 1 isoform a [Homo sapiens]
Length = 382
Score = 776 bits (2003), Expect = 0.0
Identities = 382/382 (100%), Positives = 382/382 (100%)
Query: 1 MAVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGR 60
MAVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGR
Sbjct: 1 MAVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGR 60
Query: 61 CSRENCKYLHPPPHLKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFSV 120
CSRENCKYLHPPPHLKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFSV
Sbjct: 61 CSRENCKYLHPPPHLKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFSV 120
Query: 121 APSLATNASAAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAAAAAAQKLMRTD 180
APSLATNASAAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAAAAAAQKLMRTD
Sbjct: 121 APSLATNASAAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAAAAAAQKLMRTD 180
Query: 181 RLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPP 240
RLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPP
Sbjct: 181 RLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPP 240
Query: 241 AHLQAKIKAAQYQVNQAAAAQAAATAAAMGIPQAVLPPLPKRPALEKTNGATAVFNTGIF 300
AHLQAKIKAAQYQVNQAAAAQAAATAAAMGIPQAVLPPLPKRPALEKTNGATAVFNTGIF
Sbjct: 241 AHLQAKIKAAQYQVNQAAAAQAAATAAAMGIPQAVLPPLPKRPALEKTNGATAVFNTGIF 300
Query: 301 QYQQALANMQLQQHTAFLPPGSILCMTPATSVVPMVHGATPATVSAATTSATSVPFAATA 360
QYQQALANMQLQQHTAFLPPGSILCMTPATSVVPMVHGATPATVSAATTSATSVPFAATA
Sbjct: 301 QYQQALANMQLQQHTAFLPPGSILCMTPATSVVPMVHGATPATVSAATTSATSVPFAATA 360
Query: 361 TANQIPIISAEHLTSHKYVTQM 382
TANQIPIISAEHLTSHKYVTQM
Sbjct: 361 TANQIPIISAEHLTSHKYVTQM 382
>gi|46411164 muscleblind-like 1 isoform b [Homo sapiens]
Length = 370
Score = 743 bits (1919), Expect = 0.0
Identities = 370/382 (96%), Positives = 370/382 (96%), Gaps = 12/382 (3%)
Query: 1 MAVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGR 60
MAVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGR
Sbjct: 1 MAVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGR 60
Query: 61 CSRENCKYLHPPPHLKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFSV 120
CSRENCKYLHPPPHLKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFSV
Sbjct: 61 CSRENCKYLHPPPHLKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFSV 120
Query: 121 APSLATNASAAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAAAAAAQKLMRTD 180
APSLATNASAAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAAAAAAQKLMRTD
Sbjct: 121 APSLATNASAAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAAAAAAQKLMRTD 180
Query: 181 RLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPP 240
RLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPP
Sbjct: 181 RLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPP 240
Query: 241 AHLQAKIKAAQYQVNQAAAAQAAATAAAMGIPQAVLPPLPKRPALEKTNGATAVFNTGIF 300
AHLQAKIKAAQYQVNQAAAAQAAATAAAMGIPQAVLPPLPKRPALEKTNGATAVFNTGIF
Sbjct: 241 AHLQAKIKAAQYQVNQAAAAQAAATAAAMGIPQAVLPPLPKRPALEKTNGATAVFNTGIF 300
Query: 301 QYQQALANMQLQQHTAFLPPGSILCMTPATSVVPMVHGATPATVSAATTSATSVPFAATA 360
QYQQALANMQLQQHTAFLPP VPMVHGATPATVSAATTSATSVPFAATA
Sbjct: 301 QYQQALANMQLQQHTAFLPP------------VPMVHGATPATVSAATTSATSVPFAATA 348
Query: 361 TANQIPIISAEHLTSHKYVTQM 382
TANQIPIISAEHLTSHKYVTQM
Sbjct: 349 TANQIPIISAEHLTSHKYVTQM 370
>gi|46411166 muscleblind-like 1 isoform c [Homo sapiens]
Length = 388
Score = 732 bits (1890), Expect = 0.0
Identities = 370/400 (92%), Positives = 370/400 (92%), Gaps = 30/400 (7%)
Query: 1 MAVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGR 60
MAVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGR
Sbjct: 1 MAVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGR 60
Query: 61 CSRENCKYLHPPPHLKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFSV 120
CSRENCKYLHPPPHLKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFSV
Sbjct: 61 CSRENCKYLHPPPHLKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFSV 120
Query: 121 APSLATNASAAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAAAAAAQKLMRTD 180
APSLATNASAAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAAAAAAQKLMRTD
Sbjct: 121 APSLATNASAAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAAAAAAQKLMRTD 180
Query: 181 RLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPP 240
RLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPP
Sbjct: 181 RLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPP 240
Query: 241 AHLQAKIKAAQYQVNQAAAAQAAATAAAM------------------GIPQAVLPPLPKR 282
AHLQAKIKAAQYQVNQAAAAQAAATAAAM GIPQAVLPPLPKR
Sbjct: 241 AHLQAKIKAAQYQVNQAAAAQAAATAAAMTQSAVKSLKRPLEATFDLGIPQAVLPPLPKR 300
Query: 283 PALEKTNGATAVFNTGIFQYQQALANMQLQQHTAFLPPGSILCMTPATSVVPMVHGATPA 342
PALEKTNGATAVFNTGIFQYQQALANMQLQQHTAFLPP VPMVHGATPA
Sbjct: 301 PALEKTNGATAVFNTGIFQYQQALANMQLQQHTAFLPP------------VPMVHGATPA 348
Query: 343 TVSAATTSATSVPFAATATANQIPIISAEHLTSHKYVTQM 382
TVSAATTSATSVPFAATATANQIPIISAEHLTSHKYVTQM
Sbjct: 349 TVSAATTSATSVPFAATATANQIPIISAEHLTSHKYVTQM 388
>gi|46411174 muscleblind-like 1 isoform g [Homo sapiens]
Length = 342
Score = 680 bits (1755), Expect = 0.0
Identities = 332/332 (100%), Positives = 332/332 (100%)
Query: 1 MAVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGR 60
MAVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGR
Sbjct: 1 MAVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGR 60
Query: 61 CSRENCKYLHPPPHLKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFSV 120
CSRENCKYLHPPPHLKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFSV
Sbjct: 61 CSRENCKYLHPPPHLKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFSV 120
Query: 121 APSLATNASAAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAAAAAAQKLMRTD 180
APSLATNASAAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAAAAAAQKLMRTD
Sbjct: 121 APSLATNASAAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAAAAAAQKLMRTD 180
Query: 181 RLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPP 240
RLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPP
Sbjct: 181 RLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPP 240
Query: 241 AHLQAKIKAAQYQVNQAAAAQAAATAAAMGIPQAVLPPLPKRPALEKTNGATAVFNTGIF 300
AHLQAKIKAAQYQVNQAAAAQAAATAAAMGIPQAVLPPLPKRPALEKTNGATAVFNTGIF
Sbjct: 241 AHLQAKIKAAQYQVNQAAAAQAAATAAAMGIPQAVLPPLPKRPALEKTNGATAVFNTGIF 300
Query: 301 QYQQALANMQLQQHTAFLPPGSILCMTPATSV 332
QYQQALANMQLQQHTAFLPPGSILCMTPATSV
Sbjct: 301 QYQQALANMQLQQHTAFLPPGSILCMTPATSV 332
>gi|46411172 muscleblind-like 1 isoform f [Homo sapiens]
Length = 340
Score = 576 bits (1484), Expect = e-164
Identities = 301/382 (78%), Positives = 308/382 (80%), Gaps = 42/382 (10%)
Query: 1 MAVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGR 60
MAVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGR
Sbjct: 1 MAVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGR 60
Query: 61 CSRENCKYLHPPPHLKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFSV 120
CSRENCKYLHPPPHLKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFSV
Sbjct: 61 CSRENCKYLHPPPHLKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFSV 120
Query: 121 APSLATNASAAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAAAAAAQKLMRTD 180
APSLATNASAAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAAAAAAQKLMRTD
Sbjct: 121 APSLATNASAAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAAAAAAQKLMRTD 180
Query: 181 RLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPP 240
RLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPP
Sbjct: 181 RLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPP 240
Query: 241 AHLQAKIKAAQYQVNQAAAAQAAATAAAMGIPQAVLPPLPKRPALEKTNGATAVFNTGIF 300
AHLQAKIKAAQYQVNQAAAAQAAATAAAM P + P P +
Sbjct: 241 AHLQAKIKAAQYQVNQAAAAQAAATAAAM-FPWCTVLRQPLCPQQQ-------------- 285
Query: 301 QYQQALANMQLQQHTAFLPPGSILCMTPATSVVPMVHGATPATVSAATTSATSVPFAATA 360
Q ++Q Q T +P ++ ATS P AA
Sbjct: 286 HLPQVFPSLQQPQPT------------------------SPILDASTLLGATSCPAAA-- 319
Query: 361 TANQIPIISAEHLTSHKYVTQM 382
IPIISAEHLTSHKYVTQM
Sbjct: 320 -GKMIPIISAEHLTSHKYVTQM 340
>gi|46411170 muscleblind-like 1 isoform e [Homo sapiens]
Length = 314
Score = 566 bits (1458), Expect = e-161
Identities = 295/382 (77%), Positives = 301/382 (78%), Gaps = 68/382 (17%)
Query: 1 MAVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGR 60
MAVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGR
Sbjct: 1 MAVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGR 60
Query: 61 CSRENCKYLHPPPHLKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFSV 120
CSRENCKYLHPPPHLKTQLEINGRNN L QQ +A
Sbjct: 61 CSRENCKYLHPPPHLKTQLEINGRNN---------LIQQKNMA----------------- 94
Query: 121 APSLATNASAAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAAAAAAQKLMRTD 180
+ A+ + A ++ G P PV
Sbjct: 95 ------------------------MLAQQMQLANAMMPGAPLQPV--------------- 115
Query: 181 RLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPP 240
VCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPP
Sbjct: 116 ---VCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPP 172
Query: 241 AHLQAKIKAAQYQVNQAAAAQAAATAAAMGIPQAVLPPLPKRPALEKTNGATAVFNTGIF 300
AHLQAKIKAAQYQVNQAAAAQAAATAAAMGIPQAVLPPLPKRPALEKTNGATAVFNTGIF
Sbjct: 173 AHLQAKIKAAQYQVNQAAAAQAAATAAAMGIPQAVLPPLPKRPALEKTNGATAVFNTGIF 232
Query: 301 QYQQALANMQLQQHTAFLPPGSILCMTPATSVVPMVHGATPATVSAATTSATSVPFAATA 360
QYQQALANMQLQQHTAFLPPGSILCMTPATSVVPMVHGATPATVSAATTSATSVPFAATA
Sbjct: 233 QYQQALANMQLQQHTAFLPPGSILCMTPATSVVPMVHGATPATVSAATTSATSVPFAATA 292
Query: 361 TANQIPIISAEHLTSHKYVTQM 382
TANQIPIISAEHLTSHKYVTQM
Sbjct: 293 TANQIPIISAEHLTSHKYVTQM 314
>gi|21464125 muscleblind-like 2 isoform 1 [Homo sapiens]
Length = 367
Score = 556 bits (1434), Expect = e-159
Identities = 281/370 (75%), Positives = 307/370 (82%), Gaps = 11/370 (2%)
Query: 1 MAVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGR 60
MA++V P+RDTKWLTLEVCR+FQRGTCSR D ECKFAHP KSCQVENGRVIACFDSLKGR
Sbjct: 1 MALNVAPVRDTKWLTLEVCRQFQRGTCSRSDEECKFAHPPKSCQVENGRVIACFDSLKGR 60
Query: 61 CSRENCKYLHPPPHLKTQLEINGRNNLIQQKN-MAMLAQQMQLANAMMPGAPLQPVPMFS 119
CSRENCKYLHPP HLKTQLEINGRNNLIQQK AMLAQQMQ M PG PL PVP F
Sbjct: 61 CSRENCKYLHPPTHLKTQLEINGRNNLIQQKTAAAMLAQQMQF---MFPGTPLHPVPTFP 117
Query: 120 VAPSLATNASAAAFNPYLGPVSP--SLVPAEILPTAPMLVTGNPGVPVPAAAAAAAQKLM 177
V P++ TN +A +F PYL PV+P LVP EILPT P++V G+P V VP + A QKL+
Sbjct: 118 VGPAIGTN-TAISFAPYLAPVTPGVGLVPTEILPTTPVIVPGSPPVTVP--GSTATQKLL 174
Query: 178 RTDRLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYF 237
RTD+LEVCRE+QRGNC RGE DCRFAHPADSTMIDT+DNTVTVCMDYIKGRC REKCKYF
Sbjct: 175 RTDKLEVCREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIKGRCMREKCKYF 234
Query: 238 HPPAHLQAKIKAAQYQVNQAA-AAQAAATAA-AMGIPQAVLPPLPKRPALEKTNGATAVF 295
HPPAHLQAKIKAAQ+Q NQAA AAQAAA AA M P L PLPKR ALEK+NG +AVF
Sbjct: 235 HPPAHLQAKIKAAQHQANQAAVAAQAAAAAATVMAFPPGALHPLPKRQALEKSNGTSAVF 294
Query: 296 NTGIFQYQQALANMQLQQHTAFLPPGSILCMTPATSVVPMVHGATPATVSAATTSATSVP 355
N + YQQAL + QLQQH AF+P GS+LCMTPATS+VPM+H AT ATVSAATT ATSVP
Sbjct: 295 NPSVLHYQQALTSAQLQQHAAFIPTGSVLCMTPATSIVPMMHSATSATVSAATTPATSVP 354
Query: 356 FAATATANQI 365
FAATATANQI
Sbjct: 355 FAATATANQI 364
>gi|46411168 muscleblind-like 1 isoform d [Homo sapiens]
Length = 302
Score = 533 bits (1374), Expect = e-152
Identities = 283/382 (74%), Positives = 289/382 (75%), Gaps = 80/382 (20%)
Query: 1 MAVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGR 60
MAVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGR
Sbjct: 1 MAVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGR 60
Query: 61 CSRENCKYLHPPPHLKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFSV 120
CSRENCKYLHPPPHLKTQLEINGRNN L QQ +A
Sbjct: 61 CSRENCKYLHPPPHLKTQLEINGRNN---------LIQQKNMA----------------- 94
Query: 121 APSLATNASAAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAAAAAAQKLMRTD 180
+ A+ + A ++ G P PV
Sbjct: 95 ------------------------MLAQQMQLANAMMPGAPLQPV--------------- 115
Query: 181 RLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPP 240
VCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPP
Sbjct: 116 ---VCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPP 172
Query: 241 AHLQAKIKAAQYQVNQAAAAQAAATAAAMGIPQAVLPPLPKRPALEKTNGATAVFNTGIF 300
AHLQAKIKAAQYQVNQAAAAQAAATAAAMGIPQAVLPPLPKRPALEKTNGATAVFNTGIF
Sbjct: 173 AHLQAKIKAAQYQVNQAAAAQAAATAAAMGIPQAVLPPLPKRPALEKTNGATAVFNTGIF 232
Query: 301 QYQQALANMQLQQHTAFLPPGSILCMTPATSVVPMVHGATPATVSAATTSATSVPFAATA 360
QYQQALANMQLQQHTAFLPP VPMVHGATPATVSAATTSATSVPFAATA
Sbjct: 233 QYQQALANMQLQQHTAFLPP------------VPMVHGATPATVSAATTSATSVPFAATA 280
Query: 361 TANQIPIISAEHLTSHKYVTQM 382
TANQIPIISAEHLTSHKYVTQM
Sbjct: 281 TANQIPIISAEHLTSHKYVTQM 302
>gi|46411180 muscleblind-like 2 isoform 3 [Homo sapiens]
Length = 361
Score = 481 bits (1238), Expect = e-136
Identities = 242/324 (74%), Positives = 265/324 (81%), Gaps = 11/324 (3%)
Query: 1 MAVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGR 60
MA++V P+RDTKWLTLEVCR+FQRGTCSR D ECKFAHP KSCQVENGRVIACFDSLKGR
Sbjct: 1 MALNVAPVRDTKWLTLEVCRQFQRGTCSRSDEECKFAHPPKSCQVENGRVIACFDSLKGR 60
Query: 61 CSRENCKYLHPPPHLKTQLEINGRNNLIQQKN-MAMLAQQMQLANAMMPGAPLQPVPMFS 119
CSRENCKYLHPP HLKTQLEINGRNNLIQQK AMLAQQMQ M PG PL PVP F
Sbjct: 61 CSRENCKYLHPPTHLKTQLEINGRNNLIQQKTAAAMLAQQMQF---MFPGTPLHPVPTFP 117
Query: 120 VAPSLATNASAAAFNPYLGPVSP--SLVPAEILPTAPMLVTGNPGVPVPAAAAAAAQKLM 177
V P++ TN +A +F PYL PV+P LVP EILPT P++V G+P V VP + A QKL+
Sbjct: 118 VGPAIGTN-TAISFAPYLAPVTPGVGLVPTEILPTTPVIVPGSPPVTVP--GSTATQKLL 174
Query: 178 RTDRLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYF 237
RTD+LEVCRE+QRGNC RGE DCRFAHPADSTMIDT+DNTVTVCMDYIKGRC REKCKYF
Sbjct: 175 RTDKLEVCREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIKGRCMREKCKYF 234
Query: 238 HPPAHLQAKIKAAQYQVNQAA-AAQAAATAA-AMGIPQAVLPPLPKRPALEKTNGATAVF 295
HPPAHLQAKIKAAQ+Q NQAA AAQAAA AA M P L PLPKR ALEK+NG +AVF
Sbjct: 235 HPPAHLQAKIKAAQHQANQAAVAAQAAAAAATVMAFPPGALHPLPKRQALEKSNGTSAVF 294
Query: 296 NTGIFQYQQALANMQLQQHTAFLP 319
N + YQQAL + QLQQH AF+P
Sbjct: 295 NPSVLHYQQALTSAQLQQHAAFIP 318
>gi|19387844 muscleblind-like 3 isoform G [Homo sapiens]
Length = 354
Score = 480 bits (1235), Expect = e-135
Identities = 238/365 (65%), Positives = 280/365 (76%), Gaps = 16/365 (4%)
Query: 2 AVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGRC 61
AV+V IRDTKWLTLEVCREFQRGTCSR D +CKFAHP + C VENGRV+ACFDSLKGRC
Sbjct: 3 AVNVALIRDTKWLTLEVCREFQRGTCSRADADCKFAHPPRVCHVENGRVVACFDSLKGRC 62
Query: 62 SRENCKYLHPPPHLKTQLEINGRNNLIQQKN-MAMLAQQMQLANAMMPGAPLQPVPMFSV 120
+RENCKYLHPPPHLKTQLEINGRNNLIQQK AM AQQMQL M+ A + + F +
Sbjct: 63 TRENCKYLHPPPHLKTQLEINGRNNLIQQKTAAAMFAQQMQL---MLQNAQMSSLGSFPM 119
Query: 121 APSLATNASAAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAAAAAAQKLMRTD 180
PS+ N AFNPY+ LVPAE++P P+L+ GNP + +P A KLMR+D
Sbjct: 120 TPSIPAN-PPMAFNPYIPHPGMGLVPAELVPNTPVLIPGNPPLAMP---GAVGPKLMRSD 175
Query: 181 RLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPP 240
+LEVCRE+QRGNC RGENDCR+AHP D++MI+ +DNTVT+CMDYIKGRCSREKCKYFHPP
Sbjct: 176 KLEVCREFQRGNCTRGENDCRYAHPTDASMIEASDNTVTICMDYIKGRCSREKCKYFHPP 235
Query: 241 AHLQAKIKAAQYQVNQAAAAQAAATAAAMGIPQAVLPPLPKRPALEKTNGATAVFNTGIF 300
AHLQA++KAA +Q+N +A A+AM + L +PKR ALEK NGAT VFN +F
Sbjct: 236 AHLQARLKAAHHQMNHSA-------ASAMALQPGTLQLIPKRSALEKPNGATPVFNPTVF 288
Query: 301 QYQQALANMQLQQHTAFLPPGSILCMTPATSVVPMVHGATPATVSAATTSATSVPFAATA 360
QQAL N+QL Q AF+P G ILCM PA+++VPM+HGATP TVSAATT ATSVPFAA
Sbjct: 289 HCQQALTNLQLPQ-PAFIPAGPILCMAPASNIVPMMHGATPTTVSAATTPATSVPFAAPT 347
Query: 361 TANQI 365
T NQ+
Sbjct: 348 TGNQL 352
>gi|30315649 muscleblind-like 3 isoform R [Homo sapiens]
Length = 334
Score = 444 bits (1142), Expect = e-125
Identities = 226/382 (59%), Positives = 268/382 (70%), Gaps = 51/382 (13%)
Query: 2 AVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGRC 61
AV+V IRDTKWLTLEVCREFQRGTCSR D +CKFAHP + C VENGRV+ACFDSLKGRC
Sbjct: 3 AVNVALIRDTKWLTLEVCREFQRGTCSRADADCKFAHPPRVCHVENGRVVACFDSLKGRC 62
Query: 62 SRENCKYLHPPPHLKTQLEINGRNNLIQQKN-MAMLAQQMQLANAMMPGAPLQPVPMFSV 120
+RENCKYLHPPPHLKTQLEINGRNNLIQQK AM AQQMQL M+ A + + F +
Sbjct: 63 TRENCKYLHPPPHLKTQLEINGRNNLIQQKTAAAMFAQQMQL---MLQNAQMSSLGSFPM 119
Query: 121 APSLATNASAAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAAAAAAQKLMRTD 180
PS+ N AFNPY+ LVPAE++P P+L+ GNP + +P A KLMR+D
Sbjct: 120 TPSIPAN-PPMAFNPYIPHPGMGLVPAELVPNTPVLIPGNPPLAMP---GAVGPKLMRSD 175
Query: 181 RLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPP 240
+LEVCRE+QRGNC RGENDCR+AHP D++MI+ +DNTVT+CMDYIKGRCSREKCKYFHPP
Sbjct: 176 KLEVCREFQRGNCTRGENDCRYAHPTDASMIEASDNTVTICMDYIKGRCSREKCKYFHPP 235
Query: 241 AHLQAKIKAAQYQVNQAAAAQAAATAAAMGIPQAVLPPLPKRPALEKTNGATAVFNTGIF 300
AHLQA++KAA +Q+N +AA+
Sbjct: 236 AHLQARLKAAHHQMNHSAAS---------------------------------------- 255
Query: 301 QYQQALANMQLQQHTAFLPPGSILCMTPATSVVPMVHGATPATVSAATTSATSVPFAATA 360
AL N+QL Q AF+P G ILCM PA+++VPM+HGATP TVSAATT ATSVPFAA
Sbjct: 256 --AMALTNLQLPQ-PAFIPAGPILCMAPASNIVPMMHGATPTTVSAATTPATSVPFAAPT 312
Query: 361 TANQIPIISAEHLTSHKYVTQM 382
T NQIP +S + L S +V+QM
Sbjct: 313 TGNQIPQLSIDELNSSMFVSQM 334
>gi|155722994 zinc finger CCCH-type containing 3 [Homo sapiens]
Length = 948
Score = 46.2 bits (108), Expect = 5e-05
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 18 VCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGRCSRENCKYLH 70
VC F RGTC + D C F+H V ++ C LKG CS NC Y H
Sbjct: 699 VCTRFVRGTCKKTDGTCPFSH-----HVSKEKMPVCSYFLKGICSNSNCPYSH 746
Score = 42.0 bits (97), Expect = 0.001
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 180 DRLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHP 239
+++ VC + RG C + + C F+H + + VC ++KG CS C Y H
Sbjct: 695 EKVAVCTRFVRGTCKKTDGTCPFSH-------HVSKEKMPVCSYFLKGICSNSNCPYSHV 747
Query: 240 PAHLQAKI 247
+A++
Sbjct: 748 YVSRKAEV 755
Score = 29.3 bits (64), Expect = 6.2
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 16 LEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIACFDSLKGRCS-RENCKYLH 70
+ VC F +G CS ++ C ++H S + E C D LKG C CK H
Sbjct: 726 MPVCSYFLKGICS--NSNCPYSHVYVSRKAE-----VCSDFLKGYCPLGAKCKKKH 774
>gi|14249452 zinc finger CCCH-type containing 10 [Homo sapiens]
Length = 434
Score = 44.3 bits (103), Expect = 2e-04
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 184 VCREYQRGNCNRGENDCRFAHP--ADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPPA 241
+CR++ R C RG+ CR+ HP ++ + + + N C D+ CSR C++ H
Sbjct: 41 ICRDFLRNVCKRGKR-CRYRHPDMSEVSNLGVSKNEFIFCHDFQNKECSRPNCRFIHGSK 99
Query: 242 HLQAKIKAAQYQVNQAAAAQAAATAAAMGIPQAVLP 277
+ K + + AA +G+ A LP
Sbjct: 100 EDEDGYK----KTGELPPRLRQKVAAGLGLSPADLP 131
Score = 43.5 bits (101), Expect = 3e-04
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 18 VCREFQRGTCSRPDTECKFAHPSKS----CQVENGRVIACFDSLKGRCSRENCKYLH 70
+CR+F R C R C++ HP S V I C D CSR NC+++H
Sbjct: 41 ICRDFLRNVCKR-GKRCRYRHPDMSEVSNLGVSKNEFIFCHDFQNKECSRPNCRFIH 96
Score = 30.8 bits (68), Expect = 2.1
Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 36/85 (42%)
Query: 185 CREYQRGNCNRGENDCRFAH------------------------------PADSTMIDTN 214
C ++Q C+R +CRF H PAD +
Sbjct: 79 CHDFQNKECSRP--NCRFIHGSKEDEDGYKKTGELPPRLRQKVAAGLGLSPAD---LPNG 133
Query: 215 DNTVTVCMDYIKGRCSR-EKCKYFH 238
V +C D++KG C R KCK+ H
Sbjct: 134 KEEVPICRDFLKGDCQRGAKCKFRH 158
>gi|193788659 cleavage and polyadenylation specific factor 4-like
[Homo sapiens]
Length = 179
Score = 43.5 bits (101), Expect = 3e-04
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 7 PIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIAC-FDSLKGRCSREN 65
P R + + VC+ + RG C + D CKF H Q + R+ C F S G CS +
Sbjct: 56 PFRHDRGEKMVVCKHWLRGLCKKGD-HCKFLH-----QYDLTRMPECYFYSKFGDCSNKE 109
Query: 66 CKYLHPPPHLKTQ 78
C +LH P K+Q
Sbjct: 110 CSFLHVKPAFKSQ 122
Score = 39.3 bits (90), Expect = 0.006
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 9/62 (14%)
Query: 178 RTDRLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIK-GRCSREKCKY 236
R +++ VC+ + RG C +G++ C+F H D T + C Y K G CS ++C +
Sbjct: 61 RGEKMVVCKHWLRGLCKKGDH-CKFLHQYDLTRMPE-------CYFYSKFGDCSNKECSF 112
Query: 237 FH 238
H
Sbjct: 113 LH 114
>gi|91208418 transcription elongation regulator 1 isoform 2 [Homo
sapiens]
Length = 1077
Score = 38.5 bits (88), Expect = 0.010
Identities = 64/271 (23%), Positives = 95/271 (35%), Gaps = 35/271 (12%)
Query: 106 MMPGAPLQPVPMFS---VAPSLATNASAAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPG 162
MM G P P P F P++ P +GP P L +P + PG
Sbjct: 55 MMRGPPPPPRPPFGRPPFDPNMPPMPPPGGIPPPMGP--PHLQRPPFMPPPMSSMPPPPG 112
Query: 163 VP----VPAAAAAAAQKLMRTDRLEVCREYQRGNC---NRGENDCRFAHPADSTMIDTND 215
+ +P A L T+ + V + G N + + P +I ++
Sbjct: 113 MMFPPGMPPVTAPGTPALPPTEEIWVENKTPDGKVYYYNARTRESAWTKPDGVKVIQQSE 172
Query: 216 NTVTVCMDYIKGRCSREKCKYFHPPAHLQAKIKA-AQYQVNQAAAAQAAATAAAMGIPQA 274
T + A +QA+ +A AQ Q A AQA A A A QA
Sbjct: 173 LTPMLAAQ-----------------AQVQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQA 215
Query: 275 VLPPLPKRPALEKTNGATAVFNTGIFQYQ-QALANMQLQQHTAFLPPGSILCMTPATSVV 333
+ A + Q Q Q A +Q Q A P S +PA +V
Sbjct: 216 QAQAQAQAQAQAQAQAQAQAQAQAQAQVQAQVQAQVQAQAVGASTPTTS----SPAPAVS 271
Query: 334 PMVHGATPATVSAATTSATSVPFAATATANQ 364
+TP++ ++ TT+ATSV + Q
Sbjct: 272 TSTSSSTPSSTTSTTTTATSVAQTVSTPTTQ 302
>gi|21327715 transcription elongation regulator 1 isoform 1 [Homo
sapiens]
Length = 1098
Score = 38.5 bits (88), Expect = 0.010
Identities = 64/271 (23%), Positives = 95/271 (35%), Gaps = 35/271 (12%)
Query: 106 MMPGAPLQPVPMFS---VAPSLATNASAAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPG 162
MM G P P P F P++ P +GP P L +P + PG
Sbjct: 55 MMRGPPPPPRPPFGRPPFDPNMPPMPPPGGIPPPMGP--PHLQRPPFMPPPMSSMPPPPG 112
Query: 163 VP----VPAAAAAAAQKLMRTDRLEVCREYQRGNC---NRGENDCRFAHPADSTMIDTND 215
+ +P A L T+ + V + G N + + P +I ++
Sbjct: 113 MMFPPGMPPVTAPGTPALPPTEEIWVENKTPDGKVYYYNARTRESAWTKPDGVKVIQQSE 172
Query: 216 NTVTVCMDYIKGRCSREKCKYFHPPAHLQAKIKA-AQYQVNQAAAAQAAATAAAMGIPQA 274
T + A +QA+ +A AQ Q A AQA A A A QA
Sbjct: 173 LTPMLAAQ-----------------AQVQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQA 215
Query: 275 VLPPLPKRPALEKTNGATAVFNTGIFQYQ-QALANMQLQQHTAFLPPGSILCMTPATSVV 333
+ A + Q Q Q A +Q Q A P S +PA +V
Sbjct: 216 QAQAQAQAQAQAQAQAQAQAQAQAQAQVQAQVQAQVQAQAVGASTPTTS----SPAPAVS 271
Query: 334 PMVHGATPATVSAATTSATSVPFAATATANQ 364
+TP++ ++ TT+ATSV + Q
Sbjct: 272 TSTSSSTPSSTTSTTTTATSVAQTVSTPTTQ 302
>gi|4507961 zinc finger protein 36, C3H type, homolog [Homo sapiens]
Length = 326
Score = 37.4 bits (85), Expect = 0.023
Identities = 43/170 (25%), Positives = 64/170 (37%), Gaps = 31/170 (18%)
Query: 2 AVSVTPIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENG----RVIACFD-S 56
A S TP R E+CR F R +C+FAH + N + C
Sbjct: 96 ATSTTPSR----YKTELCRTFSESGRCRYGAKCQFAHGLGELRQANRHPKYKTELCHKFY 151
Query: 57 LKGRCS-RENCKYLHPPPHLKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPV 115
L+GRC C ++H P +L + +L Q + + + G P
Sbjct: 152 LQGRCPYGSRCHFIHNP-----------SEDLAAPGHPPVLRQSISF-SGLPSGRRTSPP 199
Query: 116 PMFSVAPSLATNASAAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPV 165
P PSL S+++F+P P P LP +P + PG P+
Sbjct: 200 PPGLAGPSL----SSSSFSPSSSPPPPG-----DLPLSPSAFSAAPGTPL 240
Score = 29.6 bits (65), Expect = 4.7
Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 9/101 (8%)
Query: 146 PAEILPTAPMLVTGNPGVPVPAAAAAAAQKLMRTDRLEVCREY-QRGNCNRGENDCRFAH 204
P P AP L G P P + A + R + E+CR + + G C G C+FAH
Sbjct: 73 PPGFAPLAPRL--GPELSPSPTSPTATSTTPSRY-KTELCRTFSESGRCRYGAK-CQFAH 128
Query: 205 PADSTMIDTND---NTVTVCMDYIKGRCS-REKCKYFHPPA 241
T Y++GRC +C + H P+
Sbjct: 129 GLGELRQANRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPS 169
>gi|239747212 PREDICTED: hypothetical protein XP_002346939 [Homo
sapiens]
Length = 1158
Score = 37.0 bits (84), Expect = 0.030
Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 108 PGAPLQPVPMFSVA-PSLATNASAAAFNPYL--GPVSPSLVPAEILPTAPMLVTGNPGVP 164
PG PL P PM A PS + N ++ FN Y P SL + PT P L G PG+
Sbjct: 360 PGLPLTPSPMMDKAKPSPSLNHASLGFNEYFPSRPHPGSLPFSTAPPTFPALTPGFPGIF 419
Query: 165 VPA 167
P+
Sbjct: 420 PPS 422
>gi|41349472 PR domain containing 16 isoform 2 [Homo sapiens]
Length = 1256
Score = 37.0 bits (84), Expect = 0.030
Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 108 PGAPLQPVPMFSVA-PSLATNASAAAFNPYL--GPVSPSLVPAEILPTAPMLVTGNPGVP 164
PG PL P PM A PS + N ++ FN Y P SL + PT P L G PG+
Sbjct: 459 PGLPLTPSPMMDKAKPSPSLNHASLGFNEYFPSRPHPGSLPFSTAPPTFPALTPGFPGIF 518
Query: 165 VPA 167
P+
Sbjct: 519 PPS 521
>gi|41349470 PR domain containing 16 isoform 1 [Homo sapiens]
Length = 1275
Score = 37.0 bits (84), Expect = 0.030
Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 108 PGAPLQPVPMFSVA-PSLATNASAAAFNPYL--GPVSPSLVPAEILPTAPMLVTGNPGVP 164
PG PL P PM A PS + N ++ FN Y P SL + PT P L G PG+
Sbjct: 459 PGLPLTPSPMMDKAKPSPSLNHASLGFNEYFPSRPHPGSLPFSTAPPTFPALTPGFPGIF 518
Query: 165 VPA 167
P+
Sbjct: 519 PPS 521
>gi|24308458 Lix1 homolog (mouse) like [Homo sapiens]
Length = 337
Score = 37.0 bits (84), Expect = 0.030
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 126 TNASAAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAAAAA 172
T A+AA P GP P P P P+L++G PG+P+P AA +
Sbjct: 29 TGAAAATATPPAGP--PPAPPPPAPPPPPLLLSGAPGLPLPPGAAGS 73
>gi|5032243 makorin ring finger protein 3 [Homo sapiens]
Length = 507
Score = 37.0 bits (84), Expect = 0.030
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 15/90 (16%)
Query: 119 SVAPSLATNASAAAFNPYLGPVSPSLVPAEI----LPTAPMLVTGNPGVPVPAAAAAAAQ 174
S AP A +A + P+ PV+P VPA + L AP G P+P+ ++
Sbjct: 41 SAAPDSALPHAARGWAPF--PVAP--VPAHLRRGGLRPAPASGGGAWPSPLPSRSSGIWT 96
Query: 175 KLMRTDRLEVCREYQRGNCNRGENDCRFAH 204
K + +CR Y G C GEN CR++H
Sbjct: 97 KQI------ICRYYIHGQCKEGEN-CRYSH 119
>gi|125987603 cleavage and polyadenylation specific factor 4, 30kDa
isoform 2 [Homo sapiens]
Length = 244
Score = 36.6 bits (83), Expect = 0.039
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 7 PIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIAC-FDSLKGRCSREN 65
P R VC+ + RG C + D +C+F H + + ++ C F S G CS +
Sbjct: 56 PFRHISGEKTVVCKHWLRGLCKKGD-QCEFLH-----EYDMTKMPECYFYSKFGECSNKE 109
Query: 66 CKYLHPPPHLK 76
C +LH P K
Sbjct: 110 CPFLHIDPESK 120
Score = 36.6 bits (83), Expect = 0.039
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 180 DRLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIK-GRCSREKCKYFH 238
++ VC+ + RG C +G+ C F H D T + C Y K G CS ++C + H
Sbjct: 63 EKTVVCKHWLRGLCKKGD-QCEFLHEYDMTKMPE-------CYFYSKFGECSNKECPFLH 114
>gi|5729939 cleavage and polyadenylation specific factor 4, 30kDa
isoform 1 [Homo sapiens]
Length = 269
Score = 36.6 bits (83), Expect = 0.039
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
Query: 7 PIRDTKWLTLEVCREFQRGTCSRPDTECKFAHPSKSCQVENGRVIAC-FDSLKGRCSREN 65
P R VC+ + RG C + D +C+F H + + ++ C F S G CS +
Sbjct: 56 PFRHISGEKTVVCKHWLRGLCKKGD-QCEFLH-----EYDMTKMPECYFYSKFGECSNKE 109
Query: 66 CKYLHPPPHLK 76
C +LH P K
Sbjct: 110 CPFLHIDPESK 120
Score = 36.6 bits (83), Expect = 0.039
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 180 DRLEVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIK-GRCSREKCKYFH 238
++ VC+ + RG C +G+ C F H D T + C Y K G CS ++C + H
Sbjct: 63 EKTVVCKHWLRGLCKKGD-QCEFLHEYDMTKMPE-------CYFYSKFGECSNKECPFLH 114
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 36.2 bits (82), Expect = 0.051
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 8/73 (10%)
Query: 106 MMPGAPLQPVPMFSVAP----SLATNASAAAFNPYLGP-VSPSLVPAEILPTAPMLVTGN 160
++P PL P P S +P S +NA+A + P L P VSPS P+ I P P++ +
Sbjct: 788 LLPTVPL-PAPSSSASPHPCPSPLSNATAQSPLPILSPTVSPS--PSPIPPVEPLMSAAS 844
Query: 161 PGVPVPAAAAAAA 173
PG P +++++++
Sbjct: 845 PGPPTLSSSSSSS 857
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 36.2 bits (82), Expect = 0.051
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 8/73 (10%)
Query: 106 MMPGAPLQPVPMFSVAP----SLATNASAAAFNPYLGP-VSPSLVPAEILPTAPMLVTGN 160
++P PL P P S +P S +NA+A + P L P VSPS P+ I P P++ +
Sbjct: 989 LLPTVPL-PAPSSSASPHPCPSPLSNATAQSPLPILSPTVSPS--PSPIPPVEPLMSAAS 1045
Query: 161 PGVPVPAAAAAAA 173
PG P +++++++
Sbjct: 1046 PGPPTLSSSSSSS 1058
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 36.2 bits (82), Expect = 0.051
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 8/73 (10%)
Query: 106 MMPGAPLQPVPMFSVAP----SLATNASAAAFNPYLGP-VSPSLVPAEILPTAPMLVTGN 160
++P PL P P S +P S +NA+A + P L P VSPS P+ I P P++ +
Sbjct: 989 LLPTVPL-PAPSSSASPHPCPSPLSNATAQSPLPILSPTVSPS--PSPIPPVEPLMSAAS 1045
Query: 161 PGVPVPAAAAAAA 173
PG P +++++++
Sbjct: 1046 PGPPTLSSSSSSS 1058
>gi|13540521 basic helix-loop-helix domain containing, class B, 3
[Homo sapiens]
Length = 482
Score = 36.2 bits (82), Expect = 0.051
Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 12/73 (16%)
Query: 109 GAPLQPVPMFSVAPS------LATNASAAAFNPYLGP--VSPSLVPAEILPTAPMLVTGN 160
GAP P P + AP L+ +A+AA P+L + L PA P+L
Sbjct: 334 GAPF-PQPAAAAAPFCLPFCFLSPSAAAAYVQPFLDKSGLEKYLYPAAAAAPFPLLY--- 389
Query: 161 PGVPVPAAAAAAA 173
PG+P PAAAAAAA
Sbjct: 390 PGIPAPAAAAAAA 402
>gi|28872796 CCAAT/enhancer binding protein beta [Homo sapiens]
Length = 345
Score = 35.8 bits (81), Expect = 0.066
Identities = 34/130 (26%), Positives = 48/130 (36%), Gaps = 7/130 (5%)
Query: 66 CKYLHPPPHLKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVPMFSVAPSLA 125
C L PPP +E+ N + + A + A A P A P P S+
Sbjct: 11 CLPLPPPPPAFKSMEVA---NFYYEADCLAAAYGGKAAPAAPPAARPGPRPPAGELGSIG 67
Query: 126 TNASAAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAAAAAAQKLMRTDRLEVC 185
+ A F+PYL P+ PA TA P P PA A++ +D
Sbjct: 68 DHERAIDFSPYLEPLGAPQAPAP--ATATDTFEAAPPAPAPAPASSGQHHDFLSDLFS-- 123
Query: 186 REYQRGNCNR 195
+Y NC +
Sbjct: 124 DDYGGKNCKK 133
>gi|4885193 AT rich interactive domain 3A (BRIGHT- like) protein
[Homo sapiens]
Length = 593
Score = 35.8 bits (81), Expect = 0.066
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 15/120 (12%)
Query: 67 KYLHP----------PPHLKTQLEINGRNNLIQQKNMAMLAQQMQLANAMMPGAPLQPVP 116
KYL+P P L+ ++ N R Q ++ A A+ M+ L P
Sbjct: 320 KYLYPYECEKRGLSNPNELQAAIDSNRREGRRQSFGGSLFAYSPGGAHGMLSSPKL---P 376
Query: 117 MFSVAPSLATNASAAAFNPYLGPVSPSLVPAEILPTAPMLVTGNPGVPVPAAA--AAAAQ 174
+ S+ + +TN S+ P + S +P + P+ + G+P V AAA AAAAQ
Sbjct: 377 VSSLGLAASTNGSSITPAPKIKKEEDSAIPITVPGRLPVSLAGHPVVAAQAAAVQAAAAQ 436
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.128 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,183,769
Number of Sequences: 37866
Number of extensions: 784312
Number of successful extensions: 4596
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 138
Number of HSP's that attempted gapping in prelim test: 4085
Number of HSP's gapped (non-prelim): 528
length of query: 382
length of database: 18,247,518
effective HSP length: 104
effective length of query: 278
effective length of database: 14,309,454
effective search space: 3978028212
effective search space used: 3978028212
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.