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Search of human proteins with 40807471
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|40807471 transcription termination factor, RNA polymerase II
[Homo sapiens]
(1162 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|40807471 transcription termination factor, RNA polymerase II ... 2325 0.0
gi|21071052 helicase-like transcription factor [Homo sapiens] 257 4e-68
gi|21071054 helicase-like transcription factor [Homo sapiens] 257 4e-68
gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription facto... 174 6e-43
gi|6912622 RAD54 homolog B [Homo sapiens] 173 7e-43
gi|164419749 SWI/SNF-related matrix-associated actin-dependent r... 168 3e-41
gi|58331268 excision repair protein ERCC6-like [Homo sapiens] 166 9e-41
gi|21071044 SWI/SNF-related matrix-associated actin-dependent re... 160 5e-39
gi|58219008 RAD26L hypothetical protein [Homo sapiens] 156 9e-38
gi|216548193 RAD54-like protein [Homo sapiens] 153 8e-37
gi|216548186 RAD54-like protein [Homo sapiens] 153 8e-37
gi|21071058 SWI/SNF-related matrix-associated actin-dependent re... 152 2e-36
gi|4557565 excision repair cross-complementing rodent repair def... 150 9e-36
gi|190358534 SWI/SNF-related, matrix-associated actin-dependent ... 149 2e-35
gi|21914927 helicase, lymphoid-specific [Homo sapiens] 148 3e-35
gi|190358536 SWI/SNF-related, matrix-associated actin-dependent ... 146 1e-34
gi|190358532 SWI/SNF-related, matrix-associated actin-dependent ... 146 1e-34
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 142 2e-33
gi|114326455 chromodomain helicase DNA binding protein 8 [Homo s... 136 1e-31
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 134 4e-31
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa... 132 2e-30
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 131 3e-30
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 131 3e-30
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 131 3e-30
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 131 3e-30
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 131 3e-30
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 131 3e-30
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 131 3e-30
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 130 6e-30
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 130 6e-30
>gi|40807471 transcription termination factor, RNA polymerase II [Homo
sapiens]
Length = 1162
Score = 2325 bits (6025), Expect = 0.0
Identities = 1162/1162 (100%), Positives = 1162/1162 (100%)
Query: 1 MEEVRCPEHGTFCFLKTGVRDGPNKGKSFYVCRADTCSFVRATDIPVSHCLLHEDFVVEL 60
MEEVRCPEHGTFCFLKTGVRDGPNKGKSFYVCRADTCSFVRATDIPVSHCLLHEDFVVEL
Sbjct: 1 MEEVRCPEHGTFCFLKTGVRDGPNKGKSFYVCRADTCSFVRATDIPVSHCLLHEDFVVEL 60
Query: 61 QGLLLPQDKKEYRLFFRCIRSKAEGKRWCGSIPWQDPDSKEHSVSNKSQHASETFHHSSN 120
QGLLLPQDKKEYRLFFRCIRSKAEGKRWCGSIPWQDPDSKEHSVSNKSQHASETFHHSSN
Sbjct: 61 QGLLLPQDKKEYRLFFRCIRSKAEGKRWCGSIPWQDPDSKEHSVSNKSQHASETFHHSSN 120
Query: 121 WLRNPFKVLDKNQEPALWKQLIKGEGEEKKADKKQREKGDQLFDQKKEQKPEMMEKDLSS 180
WLRNPFKVLDKNQEPALWKQLIKGEGEEKKADKKQREKGDQLFDQKKEQKPEMMEKDLSS
Sbjct: 121 WLRNPFKVLDKNQEPALWKQLIKGEGEEKKADKKQREKGDQLFDQKKEQKPEMMEKDLSS 180
Query: 181 GLVPKKKQSVVQEKKQEEGAEIQCEAETGGTHKRDFSEIKSQQCQGNELTRPSASSQEKS 240
GLVPKKKQSVVQEKKQEEGAEIQCEAETGGTHKRDFSEIKSQQCQGNELTRPSASSQEKS
Sbjct: 181 GLVPKKKQSVVQEKKQEEGAEIQCEAETGGTHKRDFSEIKSQQCQGNELTRPSASSQEKS 240
Query: 241 SGKSQDVQRESEPLREKVTQLLPQNVHSHNSISKPQKGGPLNKEYTNWEAKETKAKDGPS 300
SGKSQDVQRESEPLREKVTQLLPQNVHSHNSISKPQKGGPLNKEYTNWEAKETKAKDGPS
Sbjct: 241 SGKSQDVQRESEPLREKVTQLLPQNVHSHNSISKPQKGGPLNKEYTNWEAKETKAKDGPS 300
Query: 301 IQATQKSLPQGHFQERPETHSVPAPGGPAAQAAPAAPGLSLGEGREAATSSDDEEEDDVV 360
IQATQKSLPQGHFQERPETHSVPAPGGPAAQAAPAAPGLSLGEGREAATSSDDEEEDDVV
Sbjct: 301 IQATQKSLPQGHFQERPETHSVPAPGGPAAQAAPAAPGLSLGEGREAATSSDDEEEDDVV 360
Query: 361 FVSSKPGSPLLFDSTLDLETKENLQFPDRSVQRKVSPASGVSKKVEPSDPVARRVYLTTQ 420
FVSSKPGSPLLFDSTLDLETKENLQFPDRSVQRKVSPASGVSKKVEPSDPVARRVYLTTQ
Sbjct: 361 FVSSKPGSPLLFDSTLDLETKENLQFPDRSVQRKVSPASGVSKKVEPSDPVARRVYLTTQ 420
Query: 421 LKQKKSTLASVNIQALPDKGQKLIKQIQELEEVLSGLTLSPEQGTNEKSNSQVPQQSHFT 480
LKQKKSTLASVNIQALPDKGQKLIKQIQELEEVLSGLTLSPEQGTNEKSNSQVPQQSHFT
Sbjct: 421 LKQKKSTLASVNIQALPDKGQKLIKQIQELEEVLSGLTLSPEQGTNEKSNSQVPQQSHFT 480
Query: 481 KTTTGPPHLVPPQPLPRRGTQPVGSLELKSACQVTAGGSSQCYRGHTNQDHVHAVWKITS 540
KTTTGPPHLVPPQPLPRRGTQPVGSLELKSACQVTAGGSSQCYRGHTNQDHVHAVWKITS
Sbjct: 481 KTTTGPPHLVPPQPLPRRGTQPVGSLELKSACQVTAGGSSQCYRGHTNQDHVHAVWKITS 540
Query: 541 EAIGQLHRSLESCPGETVVAEDPAGLKVPLLLHQKQALAWLLWRESQKPQGGILADDMGL 600
EAIGQLHRSLESCPGETVVAEDPAGLKVPLLLHQKQALAWLLWRESQKPQGGILADDMGL
Sbjct: 541 EAIGQLHRSLESCPGETVVAEDPAGLKVPLLLHQKQALAWLLWRESQKPQGGILADDMGL 600
Query: 601 GKTLTMIALILTQKNQEKKEEKEKSTALTWLSKDDSCDFTSHGTLIICPASLIHHWKNEV 660
GKTLTMIALILTQKNQEKKEEKEKSTALTWLSKDDSCDFTSHGTLIICPASLIHHWKNEV
Sbjct: 601 GKTLTMIALILTQKNQEKKEEKEKSTALTWLSKDDSCDFTSHGTLIICPASLIHHWKNEV 660
Query: 661 EKRVNSNKLRVYLYHGPNRDSRARVLSTYDIVITTYSLVAKEIPTNKQEAEIPGANLNVE 720
EKRVNSNKLRVYLYHGPNRDSRARVLSTYDIVITTYSLVAKEIPTNKQEAEIPGANLNVE
Sbjct: 661 EKRVNSNKLRVYLYHGPNRDSRARVLSTYDIVITTYSLVAKEIPTNKQEAEIPGANLNVE 720
Query: 721 GTSTPLLRIAWARIILDEAHNVKNPRVQTSIAVCKLQACARWAVTGTPIQNNLLDMYSLL 780
GTSTPLLRIAWARIILDEAHNVKNPRVQTSIAVCKLQACARWAVTGTPIQNNLLDMYSLL
Sbjct: 721 GTSTPLLRIAWARIILDEAHNVKNPRVQTSIAVCKLQACARWAVTGTPIQNNLLDMYSLL 780
Query: 781 KFLRCSPFDEFNLWRSQVDNGSKKGGERLSILTKSLLLRRTKDQLDSTGRPLVILPQRKF 840
KFLRCSPFDEFNLWRSQVDNGSKKGGERLSILTKSLLLRRTKDQLDSTGRPLVILPQRKF
Sbjct: 781 KFLRCSPFDEFNLWRSQVDNGSKKGGERLSILTKSLLLRRTKDQLDSTGRPLVILPQRKF 840
Query: 841 QLHHLKLSEDEETVYNVFFARSRSALQSYLKRHESRGNQSGRSPNNPFSRVALEFGSEEP 900
QLHHLKLSEDEETVYNVFFARSRSALQSYLKRHESRGNQSGRSPNNPFSRVALEFGSEEP
Sbjct: 841 QLHHLKLSEDEETVYNVFFARSRSALQSYLKRHESRGNQSGRSPNNPFSRVALEFGSEEP 900
Query: 901 RHSEAADSPRSSTVHILSQLLRLRQCCCHLSLLKSALDPMELKGEGLVLSLEEQLSALTL 960
RHSEAADSPRSSTVHILSQLLRLRQCCCHLSLLKSALDPMELKGEGLVLSLEEQLSALTL
Sbjct: 901 RHSEAADSPRSSTVHILSQLLRLRQCCCHLSLLKSALDPMELKGEGLVLSLEEQLSALTL 960
Query: 961 SELRDSEPSSTVSLNGTFFKMELFEGMRESTKISSLLAELEAIQRNSASQKSVIVSQWTN 1020
SELRDSEPSSTVSLNGTFFKMELFEGMRESTKISSLLAELEAIQRNSASQKSVIVSQWTN
Sbjct: 961 SELRDSEPSSTVSLNGTFFKMELFEGMRESTKISSLLAELEAIQRNSASQKSVIVSQWTN 1020
Query: 1021 MLKVVALHLKKHGLTYATIDGSVNPKQRMDLVEAFNHSRGPQVMLISLLAGGVGLNLTGG 1080
MLKVVALHLKKHGLTYATIDGSVNPKQRMDLVEAFNHSRGPQVMLISLLAGGVGLNLTGG
Sbjct: 1021 MLKVVALHLKKHGLTYATIDGSVNPKQRMDLVEAFNHSRGPQVMLISLLAGGVGLNLTGG 1080
Query: 1081 NHLFLLDMHWNPSLEDQACDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQV 1140
NHLFLLDMHWNPSLEDQACDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQV
Sbjct: 1081 NHLFLLDMHWNPSLEDQACDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQV 1140
Query: 1141 LSGSGESVTKLTLADLRVLFGI 1162
LSGSGESVTKLTLADLRVLFGI
Sbjct: 1141 LSGSGESVTKLTLADLRVLFGI 1162
>gi|21071052 helicase-like transcription factor [Homo sapiens]
Length = 1009
Score = 257 bits (657), Expect = 4e-68
Identities = 175/580 (30%), Positives = 288/580 (49%), Gaps = 110/580 (18%)
Query: 618 KKEEKEKSTALTWLSKDDSCDFTSHGTLIICPASLIHHWKNEVEKRVNSN-KLRVYLYHG 676
KK+ +K SK + TLIICP S++ +W ++ + + S+ L Y+Y+G
Sbjct: 452 KKKMLKKGACAVEGSKKTDVEERPRTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYG 511
Query: 677 PNRDSRARVLSTYDIVITTYSLVAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAWARIIL 736
P+R +LS DIV+TTY+++ + T +PL I W R+IL
Sbjct: 512 PDRIREPALLSKQDIVLTTYNILTHDYGTKGD---------------SPLHSIRWLRVIL 556
Query: 737 DEAHNVKNPRVQTSIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRS 796
DE H ++NP Q + AV L++ RW +TGTPIQN+L D++SLL FL+ PF + W
Sbjct: 557 DEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLLSFLKLKPFIDREWWHR 616
Query: 797 QVDN----GSKKGGERLSILTKSLLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEE 852
+ G + G RL L K++ LRRTK G+P++ LP+RK + H+ LS++E
Sbjct: 617 TIQRPVTMGDEGGLRRLQSLIKNITLRRTKTS-KIKGKPVLELPERKVFIQHITLSDEER 675
Query: 853 TVYNVFFARSRSALQSYLKRHESRGNQSGRSPNNPFSRVALEFGSEEPRHSEAADSPRSS 912
+Y R+ + Y G+ +++
Sbjct: 676 KIYQSVKNEGRATIGRYFNE-----------------------GTVLAHYAD-------- 704
Query: 913 TVHILSQLLRLRQCCCHLSLLKSALD---------PMELKGE-----GLVLSLEEQ---- 954
+L LLRLRQ CCH LL +A+ P EL+ + L+LS
Sbjct: 705 ---VLGLLLRLRQICCHTYLLTNAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEECA 761
Query: 955 --LSALTL----------------SELRDSEPSSTVSL------NGTFFKMELFEGMRES 990
L +LT+ +++ +P + L + E R+S
Sbjct: 762 ICLDSLTVPVITHCAHVFCKPCICQVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDS 821
Query: 991 TK-----------ISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYATI 1039
K I++L+ L +++ + + KS++VSQ+T L ++ + LK G + +
Sbjct: 822 EKKSDMEWTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRL 881
Query: 1040 DGSVNPKQRMDLVEAFNHSR--GPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQ 1097
DGS+ K+R++ ++ F ++ P +ML+SL AGGVGLNL+ + +FL+D WNP+ EDQ
Sbjct: 882 DGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQ 941
Query: 1098 ACDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLA 1137
DR +R+GQ+++V+I +F+ + +VEE +L++Q KK++LA
Sbjct: 942 CFDRCHRLGQKQEVIITKFIVKDSVEENMLKIQNKKRELA 981
Score = 59.3 bits (142), Expect = 2e-08
Identities = 43/113 (38%), Positives = 56/113 (49%), Gaps = 33/113 (29%)
Query: 532 VHAVWKITSEAI----GQLHRSLESCPGETVVAEDPAGLKVPLLLHQKQALAWLLWRESQ 587
VHA ++T+E + +L L+ +T E ++ PLL HQKQALAW++ RE+
Sbjct: 199 VHAAVQMTTEQLKTEFDKLFEDLKE-DDKTHEMEPAEAIETPLLPHQKQALAWMVSRENS 257
Query: 588 KP----------------------------QGGILADDMGLGKTLTMIALILT 612
K GGILADDMGLGKTLT IA+ILT
Sbjct: 258 KELPPFWEQRNDLYYNTITNFSEKDRPENVHGGILADDMGLGKTLTAIAVILT 310
>gi|21071054 helicase-like transcription factor [Homo sapiens]
Length = 1009
Score = 257 bits (657), Expect = 4e-68
Identities = 175/580 (30%), Positives = 288/580 (49%), Gaps = 110/580 (18%)
Query: 618 KKEEKEKSTALTWLSKDDSCDFTSHGTLIICPASLIHHWKNEVEKRVNSN-KLRVYLYHG 676
KK+ +K SK + TLIICP S++ +W ++ + + S+ L Y+Y+G
Sbjct: 452 KKKMLKKGACAVEGSKKTDVEERPRTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYG 511
Query: 677 PNRDSRARVLSTYDIVITTYSLVAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAWARIIL 736
P+R +LS DIV+TTY+++ + T +PL I W R+IL
Sbjct: 512 PDRIREPALLSKQDIVLTTYNILTHDYGTKGD---------------SPLHSIRWLRVIL 556
Query: 737 DEAHNVKNPRVQTSIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRS 796
DE H ++NP Q + AV L++ RW +TGTPIQN+L D++SLL FL+ PF + W
Sbjct: 557 DEGHAIRNPNAQQTKAVLDLESERRWVLTGTPIQNSLKDLWSLLSFLKLKPFIDREWWHR 616
Query: 797 QVDN----GSKKGGERLSILTKSLLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEE 852
+ G + G RL L K++ LRRTK G+P++ LP+RK + H+ LS++E
Sbjct: 617 TIQRPVTMGDEGGLRRLQSLIKNITLRRTKTS-KIKGKPVLELPERKVFIQHITLSDEER 675
Query: 853 TVYNVFFARSRSALQSYLKRHESRGNQSGRSPNNPFSRVALEFGSEEPRHSEAADSPRSS 912
+Y R+ + Y G+ +++
Sbjct: 676 KIYQSVKNEGRATIGRYFNE-----------------------GTVLAHYAD-------- 704
Query: 913 TVHILSQLLRLRQCCCHLSLLKSALD---------PMELKGE-----GLVLSLEEQ---- 954
+L LLRLRQ CCH LL +A+ P EL+ + L+LS
Sbjct: 705 ---VLGLLLRLRQICCHTYLLTNAVSSNGPSGNDTPEELRKKLIRKMKLILSSGSDEECA 761
Query: 955 --LSALTL----------------SELRDSEPSSTVSL------NGTFFKMELFEGMRES 990
L +LT+ +++ +P + L + E R+S
Sbjct: 762 ICLDSLTVPVITHCAHVFCKPCICQVIQNEQPHAKCPLCRNDIHEDNLLECPPEELARDS 821
Query: 991 TK-----------ISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYATI 1039
K I++L+ L +++ + + KS++VSQ+T L ++ + LK G + +
Sbjct: 822 EKKSDMEWTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPLKASGFVFTRL 881
Query: 1040 DGSVNPKQRMDLVEAFNHSR--GPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQ 1097
DGS+ K+R++ ++ F ++ P +ML+SL AGGVGLNL+ + +FL+D WNP+ EDQ
Sbjct: 882 DGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLMDPAWNPAAEDQ 941
Query: 1098 ACDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLA 1137
DR +R+GQ+++V+I +F+ + +VEE +L++Q KK++LA
Sbjct: 942 CFDRCHRLGQKQEVIITKFIVKDSVEENMLKIQNKKRELA 981
Score = 59.3 bits (142), Expect = 2e-08
Identities = 43/113 (38%), Positives = 56/113 (49%), Gaps = 33/113 (29%)
Query: 532 VHAVWKITSEAI----GQLHRSLESCPGETVVAEDPAGLKVPLLLHQKQALAWLLWRESQ 587
VHA ++T+E + +L L+ +T E ++ PLL HQKQALAW++ RE+
Sbjct: 199 VHAAVQMTTEQLKTEFDKLFEDLKE-DDKTHEMEPAEAIETPLLPHQKQALAWMVSRENS 257
Query: 588 KP----------------------------QGGILADDMGLGKTLTMIALILT 612
K GGILADDMGLGKTLT IA+ILT
Sbjct: 258 KELPPFWEQRNDLYYNTITNFSEKDRPENVHGGILADDMGLGKTLTAIAVILT 310
>gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription
factor-associated, 170kDa [Homo sapiens]
Length = 1849
Score = 174 bits (440), Expect = 6e-43
Identities = 166/621 (26%), Positives = 270/621 (43%), Gaps = 104/621 (16%)
Query: 563 PAGLKVPLLLHQKQALAWLLWRESQKPQGGILADDMGLGKTLTMIALILTQKNQEKKEEK 622
P + L +Q+ + WL + K G IL DDMGLGKTL I ++ +E
Sbjct: 1259 PVPINAELRKYQQDGVNWLAFLNKYKLHG-ILCDDMGLGKTLQSICILAGDHCHRAQEYA 1317
Query: 623 EKSTALTWLSKDDSCDFTSHGTLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPNRDSR 682
A + +L++CP +L HW +EV K + L Y GP + R
Sbjct: 1318 RSKLA----------ECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTE-R 1366
Query: 683 ARV---LSTYDIVITTYSLVAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAWARIILDEA 739
R+ + +++++ +Y +V +I + I + ILDE
Sbjct: 1367 IRLQHQVKRHNLIVASYDVVRNDIDFFRN--------------------IKFNYCILDEG 1406
Query: 740 HNVKNPRVQTSIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQV- 798
H +KN + + S AV +L A R ++GTPIQNN+L+++SL FL + ++
Sbjct: 1407 HVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYG 1466
Query: 799 -------DNGSKKGGERLSILTKS--------LLLRRTKDQLDSTGRPLVILPQRKFQLH 843
D S + +L LLRR K+ + L LP + Q +
Sbjct: 1467 KPILASRDARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDV------LQDLPPKIIQDY 1520
Query: 844 HLKLSEDEETVYNVFFARSRSALQSYLKRHESRGNQSGRSPNNPFSRVALEFGSEEPRHS 903
+ LS + +Y F A+SR+ + S L +E+P+
Sbjct: 1521 YCTLSPLQVQLYEDF-AKSRAKCDV----------------DETVSSATLSEETEKPK-- 1561
Query: 904 EAADSPRSSTVHILSQLLRLRQCCCHLSLLKSALDPMELKGEGLVLSLEEQLSALTLSEL 963
+T H+ L LR+ C H +L+ + P E K L+++ S L
Sbjct: 1562 ------LKATGHVFQALQYLRKLCNHPALVLTPQHP-EFKTTAEKLAVQN-------SSL 1607
Query: 964 RDSEPSSTVS-LNGTFFKMELFEGMRESTKISSLLAELEAIQRNSASQKSVIVSQWTNML 1022
D + + +S L L G + S++A+ + +I Q +ML
Sbjct: 1608 HDIQHAPKLSALKQLLLDCGLGNGSTSESGTESVVAQ----------HRILIFCQLKSML 1657
Query: 1023 KVVALHLKKHGL---TYATIDGSVNPKQRMDLVEAFNHSRGPQVMLISLLAGGVGLNLTG 1079
+V L K L TY +DGS+ P QR +V FN+ V+L++ GG+GLNLTG
Sbjct: 1658 DIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTG 1717
Query: 1080 GNHLFLLDMHWNPSLEDQACDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQ 1139
+ + ++ WNP + QA DR +R+GQ++ V ++R + GT+EEKI+ LQ+ K ++A
Sbjct: 1718 ADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANT 1777
Query: 1140 VLSGSGESVTKLTLADLRVLF 1160
V+S S+ + L LF
Sbjct: 1778 VISQENSSLQSMGTDQLLDLF 1798
>gi|6912622 RAD54 homolog B [Homo sapiens]
Length = 910
Score = 173 bits (439), Expect = 7e-43
Identities = 163/599 (27%), Positives = 258/599 (43%), Gaps = 121/599 (20%)
Query: 573 HQKQALAWL----LWRESQKPQGGILADDMGLGKTLTMIALILTQKNQEKKEEKEKSTAL 628
HQK+ + +L + G ILAD+MGLGKTL I+LI T + Q K
Sbjct: 299 HQKEGIIFLYECVMGMRMNGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGGKP----- 353
Query: 629 TWLSKDDSCDFTSHGTLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPNRDSRARVLST 688
TLI+ P SL+++WK E +K + S +++++ ++
Sbjct: 354 -----------VIKKTLIVTPGSLVNNWKKEFQKWLGSERIKIFTVDQDHKVEEFIKSIF 402
Query: 689 YDIVITTYSLVAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAWARIILDEAHNVKNPRVQ 748
Y ++I +Y ++ + + K I + +I DE H +KN ++
Sbjct: 403 YSVLIISYEMLLRSLDQIKN--------------------IKFDLLICDEGHRLKNSAIK 442
Query: 749 TSIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRS------------ 796
T+ A+ L R +TGTPIQN+L + ++L+ F+ + +R
Sbjct: 443 TTTALISLSCEKRIILTGTPIQNDLQEFFALIDFVNPGILGSLSSYRKIYEEPIILSREP 502
Query: 797 QVDNGSKKGGER----LSILTKSLLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEE 852
K+ GER L+ LT +LRRT++ ++ LP +
Sbjct: 503 SASEEEKELGERRAAELTCLTGLFILRRTQEIINK------YLPPK-------------- 542
Query: 853 TVYNVFFARSRSALQSYLKRHESRGNQSGRSPNNPFSRVALEFGSEEPRHSEAADSPRSS 912
+ NV F R ALQ L R + N+ R L+ E H
Sbjct: 543 -IENVVFCRP-GALQIELYR---------KLLNSQVVRFCLQGLLENSPH---------- 581
Query: 913 TVHILSQLLRLRQCCCHLSLLKSALDPMELKGEGLVLSLEEQLSALTLSELRDSEPSSTV 972
L + L++ C H LL +++ E++ S+ S +
Sbjct: 582 ----LICIGALKKLCNHPCLLFNSIK-------------EKECSSTCDKNEEKSLYKGLL 624
Query: 973 SLNGTFFKMELFEGMRESTKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKH 1032
S+ + LF +ES K+ L L I ++K V+VS +T L ++ K+H
Sbjct: 625 SVFPADYNPLLFTE-KESGKLQVLSKLLAVIHELRPTEKVVLVSNYTQTLNILQEVCKRH 683
Query: 1033 GLTYATIDGSVNPKQRMDLVEAFNHSRGPQ-VMLISLLAGGVGLNLTGGNHLFLLDMHWN 1091
G Y +DG QR +V+ FN + L+S AGGVGLNL GG+HL L D+ WN
Sbjct: 684 GYAYTRLDGQTPISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNLIGGSHLILYDIDWN 743
Query: 1092 PSLEDQACDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSGSGESVTK 1150
P+ + QA R++R GQ+ V I+R + GT+EEKI Q Q ++KQ L G+ +TK
Sbjct: 744 PATDIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQRQ-----ISKQGLCGAVVDLTK 797
>gi|164419749 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform b [Homo sapiens]
Length = 1042
Score = 168 bits (425), Expect = 3e-41
Identities = 155/584 (26%), Positives = 255/584 (43%), Gaps = 141/584 (24%)
Query: 569 PLLLHQKQALAWLLWRESQKPQGGILADDMGLGKTLTMIALILTQKNQEKKEEKEKSTAL 628
PL +Q + L WL+ + GILAD+MGLGKTL IAL+ K+
Sbjct: 182 PLRDYQIRGLNWLI-SLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPH----- 235
Query: 629 TWLSKDDSCDFTSHGTLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPNRDSRARVL-- 686
+++ P S +H+W NE ++ V S LRV + G ++D+RA +
Sbjct: 236 ----------------MVLVPKSTLHNWMNEFKRWVPS--LRVICFVG-DKDARAAFIRD 276
Query: 687 ----STYDIVITTYSLVAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAWARIILDEAHNV 742
+D+ +T+Y +V KE K + W +++DEAH +
Sbjct: 277 EMMPGEWDVCVTSYEMVIKEKSVFK--------------------KFHWRYLVIDEAHRI 316
Query: 743 KNPRVQTSIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPF---DEFNLWRSQVD 799
KN + + S V + ++ R +TGTP+QNNL ++++LL FL F D+F+ W +
Sbjct: 317 KNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKN 376
Query: 800 -NGSKKGGERLSILTKSLLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYNVF 858
G +K ERL + K LLRR K ++ + LP +K +L LS+ + Y
Sbjct: 377 CLGDQKLVERLHAVLKPFLLRRIKTDVEKS------LPPKKEIKIYLGLSKMQREWYTKI 430
Query: 859 FARSRSALQSYLKRHESRGNQSGRSPNNPFSRVALEFGSEEPRHSEAADSPRSSTVHILS 918
+ L S S + + +L+
Sbjct: 431 LMKDIDVLNS---------------------------------------SGKMDKMRLLN 451
Query: 919 QLLRLRQCCCHLSLLKSALDPMELKGEGLVLSLEEQLSALTLSELRDSEPSSTVSLNGTF 978
L++LR+CC H L A +P G + +E + VS +G
Sbjct: 452 ILMQLRKCCNHPYLFDGA-EP------GPPYTTDEHI----------------VSNSG-- 486
Query: 979 FKMELFEGMRESTKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYAT 1038
+ + LLA+L+ + +I SQ T +L ++ + G Y
Sbjct: 487 ----------KMVVLDKLLAKLK-----EQGSRVLIFSQMTRLLDILEDYCMWRGYEYCR 531
Query: 1039 IDGSVNPKQRMDLVEAFNHSRGPQ-VMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQ 1097
+DG ++R + +EAFN + + ++S AGG+G+NL + + L D WNP ++ Q
Sbjct: 532 LDGQTPHEEREEAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQ 591
Query: 1098 ACDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVL 1141
A DR +R+GQ+K V + R + + TVEE+I++ E K L V+
Sbjct: 592 AMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVI 635
>gi|58331268 excision repair protein ERCC6-like [Homo sapiens]
Length = 1250
Score = 166 bits (421), Expect = 9e-41
Identities = 164/612 (26%), Positives = 261/612 (42%), Gaps = 96/612 (15%)
Query: 570 LLLHQKQALAWL--LWRESQKPQGGILADDMGLGKTLTMIALILTQKNQEKKEEKEKSTA 627
L HQK+ +A+L L+R+ +K GGILADDMGLGKT+ +IA
Sbjct: 96 LFEHQKEGIAFLYSLYRDGRK--GGILADDMGLGKTVQIIA------------------- 134
Query: 628 LTWLSKDDSCDFTSHGTLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPNRDSRARVLS 687
+LS +H L+I P +LI+ W E K +RV +HGP++D R R L+
Sbjct: 135 --FLSGMFDASLVNH-VLLIMPTNLINTWVKEFIKWTPG--MRVKTFHGPSKDERTRNLN 189
Query: 688 TYD----IVITTYSLVAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAWARIILDEAHNVK 743
++ITTY ++ I +Q + G W +ILDEAH +K
Sbjct: 190 RIQQRNGVIITTYQML---INNWQQLSSFRGQEF------------VWDYVILDEAHKIK 234
Query: 744 NPRVQTSIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQVDNGSK 803
+++I + A R +TGTPIQNNL +++SL F GS
Sbjct: 235 TSSTKSAICARAIPASNRLLLTGTPIQNNLQELWSLFDF---------------ACQGSL 279
Query: 804 KGGERLSILTKSLLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYNVFFARSR 863
G + + + R +++ + G + K+SE+ + +F R
Sbjct: 280 LGTLKTFKMEYENPITRAREKDATPGEKAL----------GFKISENLMAIIKPYFLR-- 327
Query: 864 SALQSYLKRHESRGNQSGRSPNNPFSRVALEFGSEEPRH-----------SEAADSPRSS 912
+ +++ +S ++ + NP E S ++ E S
Sbjct: 328 -RTKEDVQKKKSSNPEARLNEKNPDVDAICEMPSLSRKNDLIIWIRLVPLQEEIYRKFVS 386
Query: 913 TVHILSQLLRLRQCCCHLSLLKSALD-PMELKGEGLVLSLEEQLSALTLSELRDSEPSST 971
HI L+ R L +LK D P L L L + + + E S
Sbjct: 387 LDHIKELLMETRSPLAELGVLKKLCDHPRLLSARACCLL---NLGTFSAQDGNEGEDSPD 443
Query: 972 VSLNGTFFKMELFEGMRESTKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKK 1031
V L M ES K+ L+ L+ ++ ++++ SQ +L ++ LK
Sbjct: 444 VDHIDQVTDDTL---MEESGKMIFLMDLLKRLR--DEGHQTLVFSQSRQILNIIERLLKN 498
Query: 1032 HGLTYATIDGSV-NPKQRMDLVEAFNHSRGPQVMLISLLAGGVGLNLTGGNHLFLLDMHW 1090
IDG+V + +R + F ++ V L++ GGVGL LT + + D W
Sbjct: 499 RHFKTLRIDGTVTHLLEREKRINLFQQNKDYSVFLLTTQVGGVGLTLTAATRVVIFDPSW 558
Query: 1091 NPSLEDQACDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSGSGESVTK 1150
NP+ + QA DR+YR+GQ+++VV++R + GTVEEKI + Q K L +Q
Sbjct: 559 NPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGEKKNPFRY 618
Query: 1151 LTLADLRVLFGI 1162
+ +LR LF I
Sbjct: 619 FSKQELRELFTI 630
>gi|21071044 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform a [Homo sapiens]
Length = 1054
Score = 160 bits (406), Expect = 5e-39
Identities = 156/596 (26%), Positives = 255/596 (42%), Gaps = 153/596 (25%)
Query: 569 PLLLHQKQALAWLLWRESQKPQGGILADDMGLGKTLTMIALILTQKNQEKKEEKEKSTAL 628
PL +Q + L WL+ + GILAD+MGLGKTL IAL+ K+
Sbjct: 182 PLRDYQIRGLNWLI-SLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPH----- 235
Query: 629 TWLSKDDSCDFTSHGTLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPNRDSRARVL-- 686
+++ P S +H+W NE ++ V S LRV + G ++D+RA +
Sbjct: 236 ----------------MVLVPKSTLHNWMNEFKRWVPS--LRVICFVG-DKDARAAFIRD 276
Query: 687 ----STYDIVITTYSLVAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAWARIILDEAHNV 742
+D+ +T+Y +V KE K + W +++DEAH +
Sbjct: 277 EMMPGEWDVCVTSYEMVIKEKSVFK--------------------KFHWRYLVIDEAHRI 316
Query: 743 KNPRVQTSIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPF---DEFNLWRSQVD 799
KN + + S V + ++ R +TGTP+QNNL ++++LL FL F D+F+ W +
Sbjct: 317 KNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKN 376
Query: 800 -NGSKKGGERLSILTKSLLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYNVF 858
G +K ERL + K LLRR K ++ + LP +K +L LS+ + Y
Sbjct: 377 CLGDQKLVERLHAVLKPFLLRRIKTDVEKS------LPPKKEIKIYLGLSKMQREWYTKI 430
Query: 859 FARSRSALQSYLKRHESRGNQSGRSPNNPFSRVALEFGSEEPRHSEAADSPRSSTVHILS 918
+ L S S + + +L+
Sbjct: 431 LMKDIDVLNS---------------------------------------SGKMDKMRLLN 451
Query: 919 QLLRLRQCCCHLSLLKSALDPMELKGEGLVLSLEEQLSALTLSELRDSEPSSTVSLNGTF 978
L++LR+CC H L A +P G + +E + VS +G
Sbjct: 452 ILMQLRKCCNHPYLFDGA-EP------GPPYTTDEHI----------------VSNSG-- 486
Query: 979 FKMELFEGMRESTKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYAT 1038
+ + LLA+L+ + +I SQ T +L ++ + G Y
Sbjct: 487 ----------KMVVLDKLLAKLK-----EQGSRVLIFSQMTRLLDILEDYCMWRGYEYCR 531
Query: 1039 IDGSVNPKQRMD------------LVEAFNHSRGPQ-VMLISLLAGGVGLNLTGGNHLFL 1085
+DG ++R D +EAFN + + ++S AGG+G+NL + + L
Sbjct: 532 LDGQTPHEEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVIL 591
Query: 1086 LDMHWNPSLEDQACDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVL 1141
D WNP ++ QA DR +R+GQ+K V + R + + TVEE+I++ E K L V+
Sbjct: 592 YDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVI 647
>gi|58219008 RAD26L hypothetical protein [Homo sapiens]
Length = 712
Score = 156 bits (395), Expect = 9e-38
Identities = 150/576 (26%), Positives = 264/576 (45%), Gaps = 82/576 (14%)
Query: 591 GGILADDMGLGKTLTMI---ALILTQKN-QEKKEEKEKSTALTWLSKDDSCDFTSHGTLI 646
G IL DDMGLGKT+ +I A +L +K +E E L + K+ LI
Sbjct: 154 GCILGDDMGLGKTVQVISFLAAVLHKKGTREDIENNMPEFLLRSMKKEPLSSTAKKMFLI 213
Query: 647 ICPASLIHHWKNEVEKRVNSNKLRVYLYHGPNRDSRA-RVLSTY-DIVITTYSLVAKEIP 704
+ P S++++WK+E++ RV + HG +D+ RV +I +TTY + +
Sbjct: 214 VAPLSVLYNWKDELD---TWGYFRVTVLHGNRKDNELIRVKQRKCEIALTTYETLRLCLD 270
Query: 705 TNKQEAEIPGANLNVEGTSTPLLRIAWARIILDEAHNVKNPRVQTSIAVCKLQACARWAV 764
L + W+ +I+DEAH +KNP+ + + + L+ R +
Sbjct: 271 E--------------------LNSLEWSAVIVDEAHRIKNPKARVTEVMKALKCNVRIGL 310
Query: 765 TGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQ----VDNGSK------------KGGER 808
TGT +QNN+ +++ ++ + ++ Q V++G + K +R
Sbjct: 311 TGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEHGQRHTATKRELATGRKAMQR 370
Query: 809 LSILTKSLLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYNVFFARSRSALQS 868
L+ LRRTK + LP+++ ++ + L++ ++ VY L
Sbjct: 371 LAKKMSGWFLRRTKTLIKDQ------LPKKEDRMVYCSLTDFQKAVYQTVLETEDVTL-- 422
Query: 869 YLKRHESRGNQSGRSPNNPFSRVALEFGSEEPRHSEAADSPRSSTVHILSQLLRLRQCCC 928
L+ E +SG+ N + H E T++ LS L L++
Sbjct: 423 ILQSSEPCTCRSGQKRRNCCYKTN--------SHGETV-----KTLY-LSYLTVLQKVAN 468
Query: 929 HLSLLKSALDPMELKGEGLVLSLEEQLSALTLSELRDSEPSSTVSLNGTFFKMELFEGMR 988
H++LL++A + E L+ + +Q+ + ++ S+ ++ E +
Sbjct: 469 HVALLQAASTSKQQ--ETLIKRICDQVFSRFPDFVQKSKDAA----------FETLSDPK 516
Query: 989 ESTKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYATIDGSVNPKQR 1048
S K+ L L ++N K ++ S T +L V+ + GL Y +DGS ++R
Sbjct: 517 YSGKMKVLQQLLNHCRKNR--DKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEER 574
Query: 1049 MDLVEAFNHSRGPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQQ 1108
+ +V+ FN ++ + L+S +AGG+GLN G N + L D WNP+ + QA DR YR+GQ
Sbjct: 575 LKIVKEFNSTQDVNICLVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQC 634
Query: 1109 KDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSGS 1144
+DV + R + GTVEE I+ L++ K V+ GS
Sbjct: 635 RDVKVLRLISLGTVEE-IMYLRQIYKQQLHCVVVGS 669
>gi|216548193 RAD54-like protein [Homo sapiens]
Length = 747
Score = 153 bits (387), Expect = 8e-37
Identities = 171/655 (26%), Positives = 273/655 (41%), Gaps = 159/655 (24%)
Query: 545 QLHRSLESCPGETVVAEDPAGLKVPLLLHQKQALAWLLW-----RESQKPQGGILADDMG 599
QL E P VV DP KV L HQ++ + +L W R G I+AD+MG
Sbjct: 131 QLKLDKEKLPVHVVV--DPILSKV-LRPHQREGVKFL-WECVTSRRIPGSHGCIMADEMG 186
Query: 600 LGKTLTMIALILT--QKNQEKKEEKEKSTALTWLSKDDSCDFTSHGTLIICPASLIHHWK 657
LGKTL I L+ T +++ E K E +K+ +++ P+SL+ +W
Sbjct: 187 LGKTLQCITLMWTLLRQSPECKPEIDKA-------------------VVVSPSSLVKNWY 227
Query: 658 NEVEKRVNSNKLRVYLYHGPNRDSRARVLSTYDIVITTYSLVAKEIPTNKQEAEIPGANL 717
NEV K + +++ G ++D + L + N++ A +
Sbjct: 228 NEVGKWLGG-RIQPLAIDGGSKDEIDQKLEGF---------------MNQRGARV----- 266
Query: 718 NVEGTSTPLLRIAWAR---------------IILDEAHNVKNPRVQTSIAVCKLQACARW 762
S+P+L I++ +I DE H +KN QT A+ L R
Sbjct: 267 -----SSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRV 321
Query: 763 AVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQVDNGSKKGG-------------ERL 809
++GTPIQN+LL+ +SL+ F+ + ++ + KG ERL
Sbjct: 322 LISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEERL 381
Query: 810 SILTKSL---LLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYNVFFARSRSAL 866
LT + L+RRT D L LP + Q+ +L+ + +Y F +++ A
Sbjct: 382 RELTSIVNRCLIRRTSDILSK------YLPVKIEQVVCCRLTPLQTELYKRFLRQAKPA- 434
Query: 867 QSYLKRHESRGNQSGRSPNNPFSRVALEFGSEEPRHSEAADSPRSSTVHILSQLLRLRQC 926
E + S V LS + L++
Sbjct: 435 ------------------------------------EELLEGKMS--VSSLSSITSLKKL 456
Query: 927 CCHLSLLKSALDPMELKGEGLVLSLEEQLSALTLSELRDSEPSSTVSLNGTFFKMELFEG 986
C H +L+ D + +G V AL L S + L+G ++
Sbjct: 457 CNHPALI---YDKCVEEEDGFV-------GALDLFPPGYSSKALEPQLSGKMLVLDY--- 503
Query: 987 MRESTKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYATIDGSVNPK 1046
+ A+ R+ +S K V+VS +T L + + Y +DG+++ K
Sbjct: 504 -------------ILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIK 550
Query: 1047 QRMDLVEAFNHSRGPQ-VMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRV 1105
+R +VE FN P V ++S AGG GLNL G N L + D WNP+ ++QA R++R
Sbjct: 551 KRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRD 610
Query: 1106 GQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSGSGESVTKLTLADLRVLF 1160
GQ+K I+R + GT+EEKI Q Q KK L+ V+ + +L +L+ LF
Sbjct: 611 GQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGELKELF 665
>gi|216548186 RAD54-like protein [Homo sapiens]
Length = 747
Score = 153 bits (387), Expect = 8e-37
Identities = 171/655 (26%), Positives = 273/655 (41%), Gaps = 159/655 (24%)
Query: 545 QLHRSLESCPGETVVAEDPAGLKVPLLLHQKQALAWLLW-----RESQKPQGGILADDMG 599
QL E P VV DP KV L HQ++ + +L W R G I+AD+MG
Sbjct: 131 QLKLDKEKLPVHVVV--DPILSKV-LRPHQREGVKFL-WECVTSRRIPGSHGCIMADEMG 186
Query: 600 LGKTLTMIALILT--QKNQEKKEEKEKSTALTWLSKDDSCDFTSHGTLIICPASLIHHWK 657
LGKTL I L+ T +++ E K E +K+ +++ P+SL+ +W
Sbjct: 187 LGKTLQCITLMWTLLRQSPECKPEIDKA-------------------VVVSPSSLVKNWY 227
Query: 658 NEVEKRVNSNKLRVYLYHGPNRDSRARVLSTYDIVITTYSLVAKEIPTNKQEAEIPGANL 717
NEV K + +++ G ++D + L + N++ A +
Sbjct: 228 NEVGKWLGG-RIQPLAIDGGSKDEIDQKLEGF---------------MNQRGARV----- 266
Query: 718 NVEGTSTPLLRIAWAR---------------IILDEAHNVKNPRVQTSIAVCKLQACARW 762
S+P+L I++ +I DE H +KN QT A+ L R
Sbjct: 267 -----SSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRV 321
Query: 763 AVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQVDNGSKKGG-------------ERL 809
++GTPIQN+LL+ +SL+ F+ + ++ + KG ERL
Sbjct: 322 LISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILKGRDAAASEADRQLGEERL 381
Query: 810 SILTKSL---LLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYNVFFARSRSAL 866
LT + L+RRT D L LP + Q+ +L+ + +Y F +++ A
Sbjct: 382 RELTSIVNRCLIRRTSDILSK------YLPVKIEQVVCCRLTPLQTELYKRFLRQAKPA- 434
Query: 867 QSYLKRHESRGNQSGRSPNNPFSRVALEFGSEEPRHSEAADSPRSSTVHILSQLLRLRQC 926
E + S V LS + L++
Sbjct: 435 ------------------------------------EELLEGKMS--VSSLSSITSLKKL 456
Query: 927 CCHLSLLKSALDPMELKGEGLVLSLEEQLSALTLSELRDSEPSSTVSLNGTFFKMELFEG 986
C H +L+ D + +G V AL L S + L+G ++
Sbjct: 457 CNHPALI---YDKCVEEEDGFV-------GALDLFPPGYSSKALEPQLSGKMLVLDY--- 503
Query: 987 MRESTKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYATIDGSVNPK 1046
+ A+ R+ +S K V+VS +T L + + Y +DG+++ K
Sbjct: 504 -------------ILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIK 550
Query: 1047 QRMDLVEAFNHSRGPQ-VMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRV 1105
+R +VE FN P V ++S AGG GLNL G N L + D WNP+ ++QA R++R
Sbjct: 551 KRAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRD 610
Query: 1106 GQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSGSGESVTKLTLADLRVLF 1160
GQ+K I+R + GT+EEKI Q Q KK L+ V+ + +L +L+ LF
Sbjct: 611 GQKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGELKELF 665
>gi|21071058 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a5 [Homo sapiens]
Length = 1052
Score = 152 bits (384), Expect = 2e-36
Identities = 145/580 (25%), Positives = 238/580 (41%), Gaps = 141/580 (24%)
Query: 573 HQKQALAWLLWRESQKPQGGILADDMGLGKTLTMIALILTQKNQEKKEEKEKSTALTWLS 632
+Q + L WL+ + GILAD+MGLGKTL I+L+ K+
Sbjct: 183 YQVRGLNWLI-SLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPH--------- 232
Query: 633 KDDSCDFTSHGTLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPNRDSRARVLST---- 688
+++ P S +H+W +E ++ V + LR G A V
Sbjct: 233 ------------MVLVPKSTLHNWMSEFKRWVPT--LRSVCLIGDKEQRAAFVRDVLLPG 278
Query: 689 -YDIVITTYSLVAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAWARIILDEAHNVKNPRV 747
+D+ +T+Y ++ KE K + W +++DEAH +KN +
Sbjct: 279 EWDVCVTSYEMLIKEKSVFK--------------------KFNWRYLVIDEAHRIKNEKS 318
Query: 748 QTSIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPF---DEFNLWRSQVDN--GS 802
+ S V + + R +TGTP+QNNL +++SLL FL F D+F+ W +N G
Sbjct: 319 KLSEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSW-FDTNNCLGD 377
Query: 803 KKGGERLSILTKSLLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYNVFFARS 862
+K ERL ++ + LLRR K ++ + LP +K ++ LS+ + Y +
Sbjct: 378 QKLVERLHMVLRPFLLRRIKADVEKS------LPPKKEVKIYVGLSKMQREWYTRILMKD 431
Query: 863 RSALQSYLKRHESRGNQSGRSPNNPFSRVALEFGSEEPRHSEAADSPRSSTVHILSQLLR 922
L S K + R +L+ L++
Sbjct: 432 IDILNSAGKMDKMR---------------------------------------LLNILMQ 452
Query: 923 LRQCCCHLSLLKSALDPMELKGEGLVLSLEEQLSALTLSELRDSEPSSTVSLNGTFFKME 982
LR+CC H L A EP + + M
Sbjct: 453 LRKCCNHPYLFDGA------------------------------EPGPPYTTD-----MH 477
Query: 983 LFEGMRESTKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYATIDGS 1042
L + + LL +L+ + +I SQ T +L ++ + Y +DG
Sbjct: 478 LVTNSGKMVVLDKLLPKLK-----EQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQ 532
Query: 1043 VNPKQRMDLVEAFNHSRGPQ-VMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDR 1101
+R D + A+N + V ++S AGG+G+NL + + L D WNP ++ QA DR
Sbjct: 533 TPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDR 592
Query: 1102 IYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVL 1141
+R+GQ K V + RF+ + TVEE+I++ E K L V+
Sbjct: 593 AHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVI 632
>gi|4557565 excision repair cross-complementing rodent repair
deficiency, complementation group 6 [Homo sapiens]
Length = 1493
Score = 150 bits (378), Expect = 9e-36
Identities = 144/611 (23%), Positives = 245/611 (40%), Gaps = 143/611 (23%)
Query: 560 AEDPAGLKVP------LLLHQKQALAWLLWRESQKPQGGILADDMGLGKTLTMIALILTQ 613
AE G KVP L +Q+ + WL W + GGIL D+MGLGKT+ +IA +
Sbjct: 491 AEFDEGFKVPGFLFKKLFKYQQTGVRWL-WELHCQQAGGILGDEMGLGKTIQIIAFLAGL 549
Query: 614 KNQEKKEEKEKSTALTWLSKDDSCDFTSHG-TLIICPASLIHHWKNEVEKRVNSNKLRVY 672
+ + ++ + F G T+I+CP +++H W E ++ +
Sbjct: 550 SYSKIR------------TRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVAIL 597
Query: 673 LYHGPNRDSRARVLST----YDIVITTYSLVAKEIPTNKQEAEIPGANLNVEGTSTPLLR 728
G + +++ + I+IT+YS + + R
Sbjct: 598 HETGSYTHKKEKLIRDVAHCHGILITSYSYIRL--------------------MQDDISR 637
Query: 729 IAWARIILDEAHNVKNPRVQTSIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPF 788
W +ILDE H ++NP ++A + + R ++G+P+QNNL +++SL F+
Sbjct: 638 YDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKL 697
Query: 789 DEFNLWRSQ----VDNGSKKGGERLSILT------------KSLLLRRTKDQLDSTGRPL 832
++ Q + G + + T LLRR K + +
Sbjct: 698 GTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSDVKMS---- 753
Query: 833 VILPQRKFQLHHLKLSEDEETVYNVFFARSRSALQSYLKRHESRGNQSGRSPNNPFSRVA 892
+ LP + Q+ +L++++ VY Q+++ E +G
Sbjct: 754 LSLPDKNEQVLFCRLTDEQHKVY-----------QNFVDSKEVYRILNGE---------- 792
Query: 893 LEFGSEEPRHSEAADSPRSSTVHILSQLLRLRQCCCHLSLLKSALDPMELKGEGLVLSLE 952
+ I S L+ LR+ C H L P LKG
Sbjct: 793 ---------------------MQIFSGLIALRKICNHPDLFSGG--PKNLKG-------- 821
Query: 953 EQLSALTLSELRDSEPSSTVSLNGTFFKMELFEGMRESTKISSLLAELEAIQR--NSASQ 1010
L D E L E K S + +E++ + + Q
Sbjct: 822 ----------LPDDE---------------LEEDQFGYWKRSGKMIVVESLLKIWHKQGQ 856
Query: 1011 KSVIVSQWTNMLKVVALHLKKHGLTYATIDGSVNPKQRMDLVEAFNHSRGPQVMLISLLA 1070
+ ++ SQ ML ++ + L+ TY +DG+ R L+ +N V L++
Sbjct: 857 RVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNEDTSIFVFLLTTRV 916
Query: 1071 GGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQ 1130
GG+G+NLTG N + + D WNPS + QA +R +R+GQ+K V ++R + GT+EEKI Q
Sbjct: 917 GGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQ 976
Query: 1131 EKKKDLAKQVL 1141
K+ L +VL
Sbjct: 977 IFKQFLTNRVL 987
>gi|190358534 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform b [Homo sapiens]
Length = 1026
Score = 149 bits (375), Expect = 2e-35
Identities = 155/602 (25%), Positives = 260/602 (43%), Gaps = 108/602 (17%)
Query: 561 EDPAGLKVPLLL--HQKQALAWLLWRESQKPQGGILADDMGLGKTLTMIALILTQKNQEK 618
E P+ L L L +QK L WL GILAD+MGLGKT+ IA
Sbjct: 486 EQPSILNQSLSLKPYQKVGLNWLALVHKHG-LNGILADEMGLGKTIQAIAF--------- 535
Query: 619 KEEKEKSTALTWLSKDDSCDFTSHGTLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPN 678
L +L ++ + + LI+ PAS I +W EV + L+V Y+G +
Sbjct: 536 ---------LAYLYQEGN----NGPHLIVVPASTIDNWLREVNLWCPT--LKVLCYYG-S 579
Query: 679 RDSRARV-------LSTYDIVITTYSLVAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAW 731
++ R ++ Y++++TTY+ I ++ + LN
Sbjct: 580 QEERKQIRFNIHSRYEDYNVIVTTYNCA---ISSSDDRSLFRRLKLNYA----------- 625
Query: 732 ARIILDEAHNVKNPRVQTSIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEF 791
I DE H +KN + + A R +TGTP+QNNLL++ SLL F+ F
Sbjct: 626 ---IFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSS 682
Query: 792 NLWRSQVDNGSKKGGERLSI-----------LTKSLLLRRTKDQLDSTGRPLVILPQRKF 840
++ + K + SI + K +LRR K+++ L LP +K
Sbjct: 683 TSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEV------LKQLPPKKD 736
Query: 841 QLHHLKLSEDEETVYNVFFARSRSALQSYLKRHESRG--NQSGRSPNNPFSRVALEFGSE 898
++ +SE +E +Y F R + ++ + K E Q + N+P
Sbjct: 737 RIELCAMSEKQEQLYLGLFNRLKKSINNLEKNTEMCNVMMQLRKMANHPLLH-------- 788
Query: 899 EPRHSEAADSPRSSTVHILSQLLRLRQCCCHLSLLKSALDPMELKGEGLVLSLEEQLSAL 958
R A+ + +SQL+ C + +L E + + + +L L
Sbjct: 789 --RQYYTAEKLKE-----MSQLMLKEPTHCEAN--------PDLIFEDMEVMTDFELHVL 833
Query: 959 TLSELRDSEPSSTVSLNGTFFKMELFEGMRESTKISSLLAELEAIQRNSASQKSVIVSQW 1018
+N M+L + + +L+EL+ + V+ SQ+
Sbjct: 834 CKQYRH---------INNFQLDMDLILDSGKFRVLGCILSELK-----QKGDRVVLFSQF 879
Query: 1019 TNMLKVVALHLKKHGLTYATIDGSVNPKQRMDLVEAFNHSRGPQVMLISLLAGGVGLNLT 1078
T ML ++ + LK H Y +DG +R+ L++ FN V L+S AGG+G+NLT
Sbjct: 880 TMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLT 939
Query: 1079 GGNHLFLLDMHWNPSLEDQACDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAK 1138
N + L D+ NP + QA DR +RVGQ K+V++ + + +GT+EE +L++ ++K L +
Sbjct: 940 SANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKLEQ 999
Query: 1139 QV 1140
+
Sbjct: 1000 DM 1001
>gi|21914927 helicase, lymphoid-specific [Homo sapiens]
Length = 838
Score = 148 bits (373), Expect = 3e-35
Identities = 149/638 (23%), Positives = 263/638 (41%), Gaps = 138/638 (21%)
Query: 550 LESCPGETVVAEDPAGLKVPLLL-HQKQALAWL--LWRESQKPQGGILADDMGLGKTLTM 606
+ C G+ V + P ++ +Q + + WL LW GILAD+MGLGKT+
Sbjct: 202 VRKCNGQPVPFQQPKHFTGGVMRWYQVEGMEWLRMLWENGIN---GILADEMGLGKTVQC 258
Query: 607 IALILTQKNQEKKEEKEKSTALTWLSKDDSCDFTSHGTLIIC-PASLIHHWKNEVEKRVN 665
IA I + G ++C P S + +W E ++
Sbjct: 259 IATIALMIQRGVP-----------------------GPFLVCGPLSTLPNWMAEFKRFTP 295
Query: 666 SNKLRVYLYHGPNRD---------SRARVLSTYDIVITTYSLVAKEIPTNKQEAEIPGAN 716
+ LYHG + R L + +VIT++ + ++
Sbjct: 296 D--IPTMLYHGTQEERQKLVRNIYKRKGTLQIHPVVITSFEIAMRD-------------- 339
Query: 717 LNVEGTSTPLLRIAWARIILDEAHNVKNPRVQTSIAVCKLQACARWAVTGTPIQNNLLDM 776
L W +I+DE H +KN + + + + A + +TGTP+QNNL ++
Sbjct: 340 ------RNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSEL 393
Query: 777 YSLLKFLRCSPFDEFNLWRSQVDNGSKK-------GGER-------LSILTKSLLLRRTK 822
+SLL FL FD+ + S D S ER L + LLRR K
Sbjct: 394 WSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLK 453
Query: 823 DQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYNVFFARSRSALQSYLKRHESRGNQSGR 882
+ L + P+R+ ++ LS+ +E Y R+ + + ++ + +GR
Sbjct: 454 SDV-----ALEVPPKREVVVY-APLSKKQEIFYTAIVNRTIANMFGSSEKETIELSPTGR 507
Query: 883 SPN---------------NPFSRVALEFGSEEPRHSEAADS--PRSSTVHILSQ--LLRL 923
N ++ + E R + P S V++ Q ++ L
Sbjct: 508 PKRRTRKSINYSKIDDFPNELEKLISQIQPEVDRERAVVEVNIPVESEVNLKLQNIMMLL 567
Query: 924 RQCCCHLSLLKSALDPMELKGEGLVLSLEEQLSALTLSELRDSEPSSTVSLNGTFFKMEL 983
R+CC H L++ +DP+ + ++E+L V+ +G F ++
Sbjct: 568 RKCCNHPYLIEYPIDPVTQE-----FKIDEEL----------------VTNSGKFLILD- 605
Query: 984 FEGMRESTKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYATIDGSV 1043
+L EL+ K ++ SQ T+ML ++ + ++ +DGS+
Sbjct: 606 -----------RMLPELK-----KRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSM 649
Query: 1044 NPKQRMDLVEAFNHSRGPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIY 1103
+ +R + +FN + L+S AGG+G+NLT + + + D WNP + QA DR +
Sbjct: 650 SYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCH 709
Query: 1104 RVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVL 1141
R+GQ K VV++R V T+++KI++ K+ L K ++
Sbjct: 710 RIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLII 747
>gi|190358536 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 146 bits (369), Expect = 1e-34
Identities = 153/604 (25%), Positives = 260/604 (43%), Gaps = 110/604 (18%)
Query: 561 EDPAGLKVPLLL--HQKQALAWLLWRESQKPQGGILADDMGLGKTLTMIALILTQKNQEK 618
E P+ L L L +QK L WL GILAD+MGLGKT+ IA
Sbjct: 486 EQPSILNQSLSLKPYQKVGLNWLALVHKHG-LNGILADEMGLGKTIQAIAF--------- 535
Query: 619 KEEKEKSTALTWLSKDDSCDFTSHGTLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPN 678
L +L ++ + + LI+ PAS I +W EV + L+V Y+G +
Sbjct: 536 ---------LAYLYQEGN----NGPHLIVVPASTIDNWLREVNLWCPT--LKVLCYYG-S 579
Query: 679 RDSRARV-------LSTYDIVITTYSLVAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAW 731
++ R ++ Y++++TTY+ I ++ + LN
Sbjct: 580 QEERKQIRFNIHSRYEDYNVIVTTYNCA---ISSSDDRSLFRRLKLNYA----------- 625
Query: 732 ARIILDEAHNVKNPRVQTSIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEF 791
I DE H +KN + + A R +TGTP+QNNLL++ SLL F+ F
Sbjct: 626 ---IFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSS 682
Query: 792 NLWRSQVDNGSKKGGERLSI-----------LTKSLLLRRTKDQLDSTGRPLVILPQRKF 840
++ + K + SI + K +LRR K+++ L LP +K
Sbjct: 683 TSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEV------LKQLPPKKD 736
Query: 841 QLHHLKLSEDEETVYNVFFARSRSALQSYLKRHESRG----NQSGRSPNNPFSRVALEFG 896
++ +SE +E +Y F R + ++ + + + Q + N+P
Sbjct: 737 RIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQLRKMANHPLLH------ 790
Query: 897 SEEPRHSEAADSPRSSTVHILSQLLRLRQCCCHLSLLKSALDPMELKGEGLVLSLEEQLS 956
R A+ + +SQL+ C + +L E + + + +L
Sbjct: 791 ----RQYYTAEKLKE-----MSQLMLKEPTHCEAN--------PDLIFEDMEVMTDFELH 833
Query: 957 ALTLSELRDSEPSSTVSLNGTFFKMELFEGMRESTKISSLLAELEAIQRNSASQKSVIVS 1016
L +N M+L + + +L+EL+ + V+ S
Sbjct: 834 VLCKQYRH---------INNFQLDMDLILDSGKFRVLGCILSELK-----QKGDRVVLFS 879
Query: 1017 QWTNMLKVVALHLKKHGLTYATIDGSVNPKQRMDLVEAFNHSRGPQVMLISLLAGGVGLN 1076
Q+T ML ++ + LK H Y +DG +R+ L++ FN V L+S AGG+G+N
Sbjct: 880 QFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGIN 939
Query: 1077 LTGGNHLFLLDMHWNPSLEDQACDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDL 1136
LT N + L D+ NP + QA DR +RVGQ K+V++ + + +GT+EE +L++ ++K L
Sbjct: 940 LTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 999
Query: 1137 AKQV 1140
+ +
Sbjct: 1000 EQDM 1003
>gi|190358532 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 146 bits (369), Expect = 1e-34
Identities = 153/604 (25%), Positives = 260/604 (43%), Gaps = 110/604 (18%)
Query: 561 EDPAGLKVPLLL--HQKQALAWLLWRESQKPQGGILADDMGLGKTLTMIALILTQKNQEK 618
E P+ L L L +QK L WL GILAD+MGLGKT+ IA
Sbjct: 486 EQPSILNQSLSLKPYQKVGLNWLALVHKHG-LNGILADEMGLGKTIQAIAF--------- 535
Query: 619 KEEKEKSTALTWLSKDDSCDFTSHGTLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPN 678
L +L ++ + + LI+ PAS I +W EV + L+V Y+G +
Sbjct: 536 ---------LAYLYQEGN----NGPHLIVVPASTIDNWLREVNLWCPT--LKVLCYYG-S 579
Query: 679 RDSRARV-------LSTYDIVITTYSLVAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAW 731
++ R ++ Y++++TTY+ I ++ + LN
Sbjct: 580 QEERKQIRFNIHSRYEDYNVIVTTYNCA---ISSSDDRSLFRRLKLNYA----------- 625
Query: 732 ARIILDEAHNVKNPRVQTSIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEF 791
I DE H +KN + + A R +TGTP+QNNLL++ SLL F+ F
Sbjct: 626 ---IFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSS 682
Query: 792 NLWRSQVDNGSKKGGERLSI-----------LTKSLLLRRTKDQLDSTGRPLVILPQRKF 840
++ + K + SI + K +LRR K+++ L LP +K
Sbjct: 683 TSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVKEEV------LKQLPPKKD 736
Query: 841 QLHHLKLSEDEETVYNVFFARSRSALQSYLKRHESRG----NQSGRSPNNPFSRVALEFG 896
++ +SE +E +Y F R + ++ + + + Q + N+P
Sbjct: 737 RIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQLRKMANHPLLH------ 790
Query: 897 SEEPRHSEAADSPRSSTVHILSQLLRLRQCCCHLSLLKSALDPMELKGEGLVLSLEEQLS 956
R A+ + +SQL+ C + +L E + + + +L
Sbjct: 791 ----RQYYTAEKLKE-----MSQLMLKEPTHCEAN--------PDLIFEDMEVMTDFELH 833
Query: 957 ALTLSELRDSEPSSTVSLNGTFFKMELFEGMRESTKISSLLAELEAIQRNSASQKSVIVS 1016
L +N M+L + + +L+EL+ + V+ S
Sbjct: 834 VLCKQYRH---------INNFQLDMDLILDSGKFRVLGCILSELK-----QKGDRVVLFS 879
Query: 1017 QWTNMLKVVALHLKKHGLTYATIDGSVNPKQRMDLVEAFNHSRGPQVMLISLLAGGVGLN 1076
Q+T ML ++ + LK H Y +DG +R+ L++ FN V L+S AGG+G+N
Sbjct: 880 QFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGIN 939
Query: 1077 LTGGNHLFLLDMHWNPSLEDQACDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDL 1136
LT N + L D+ NP + QA DR +RVGQ K+V++ + + +GT+EE +L++ ++K L
Sbjct: 940 LTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKINQQKLKL 999
Query: 1137 AKQV 1140
+ +
Sbjct: 1000 EQDM 1003
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 142 bits (357), Expect = 2e-33
Identities = 147/608 (24%), Positives = 249/608 (40%), Gaps = 140/608 (23%)
Query: 548 RSLESCPGETVVAEDPA---GLKVPLLLHQKQALAWLLWRESQKPQGGILADDMGLGKTL 604
++L+ P + + PA G + L +Q + L WL K ILAD+MGLGKT+
Sbjct: 459 KALKQRPRFVALKKQPAYLGGENLELRDYQLEGLNWLA-HSWCKNNSVILADEMGLGKTI 517
Query: 605 TMIALILTQKNQEKKEEKEKSTALTWLSKDDSCDFTSHGT-LIICPASLIHHWKNEVEKR 663
I+ + +Q + +G LI+ P S + W+ E E
Sbjct: 518 QTISFLSYLFHQHQL----------------------YGPFLIVVPLSTLTSWQREFEIW 555
Query: 664 VNSNKLRVYLYHGPNRD---------SRARVLSTYDIVITTYSLVAKEIPTNKQEAEIPG 714
+ VY+ +R+ S+ + L ++ +ITTY ++ K+
Sbjct: 556 APEINVVVYIGDLMSRNTIREYEWIHSQTKRLK-FNALITTYEILLKD------------ 602
Query: 715 ANLNVEGTSTPLLRIAWARIILDEAHNVKNPRVQTSIAVCKLQACARWAVTGTPIQNNLL 774
T L I WA + +DEAH +KN + ++ R +TGTP+QN+L
Sbjct: 603 --------KTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLK 654
Query: 775 DMYSLLKFLRCSPFDEFNLWRSQVDNGSKKGGERLSILTKSLLLRRTKDQLDSTGRPLVI 834
+++SLL F+ F+ + + G + G + L + + LLRR K ++ +
Sbjct: 655 ELWSLLHFIMPEKFEFWEDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDVEKS------ 708
Query: 835 LPQRKFQLHHLKLSEDEETVYNVFFARSRSALQSYLKRHESRGNQSGRSPNNPFSRVALE 894
LP + Q+ +++S ++ Y R+ AL
Sbjct: 709 LPAKVEQILRVEMSALQKQYYKWILTRNYKAL---------------------------- 740
Query: 895 FGSEEPRHSEAADSPRSSTVHILSQLLRLRQCCCHLSLLKSALDPMELKGEGLVLSLEEQ 954
A R ST L+ ++ L++CC H L+K + G+ ++LSL
Sbjct: 741 -----------AKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEILLSLIRS 789
Query: 955 LSALTLSELRDSEPSSTVSLNGTFFKMELFEGMRESTKISSLLAELEAIQRNSASQKSVI 1014
L L + +L +RE + +I
Sbjct: 790 SGKLILLD-------------------KLLTRLRER------------------GNRVLI 812
Query: 1015 VSQWTNMLKVVALHLKKHGLTYATIDGSVNPKQRMDLVEAFNHSRGPQV-MLISLLAGGV 1073
SQ ML ++A +L + +DGS+ + R ++ FN L+S AGG+
Sbjct: 813 FSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDFCFLLSTRAGGL 872
Query: 1074 GLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQEKK 1133
G+NL + + + D WNP + QA R +R+GQ+K V I+R V +GTVEE+I++ +KK
Sbjct: 873 GINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVEEEIIERAKKK 932
Query: 1134 KDLAKQVL 1141
L V+
Sbjct: 933 MVLDHLVI 940
>gi|114326455 chromodomain helicase DNA binding protein 8 [Homo
sapiens]
Length = 2302
Score = 136 bits (342), Expect = 1e-31
Identities = 143/599 (23%), Positives = 243/599 (40%), Gaps = 141/599 (23%)
Query: 573 HQKQALAWLLWRESQKPQGGILADDMGLGKTLTMIALILTQKNQEKKEEKEKSTALTWLS 632
+Q + + WLL+ + Q ILAD+MGLGKT+ IA + N
Sbjct: 535 YQLEGVNWLLFNWYNR-QNCILADEMGLGKTIQSIAFLQEVYN----------------- 576
Query: 633 KDDSCDFTSHGT-LIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPN------------- 678
HG L+I P S I +W+ E N + +YHG
Sbjct: 577 ------VGIHGPFLVIAPLSTITNWEREFNTWTEMNTI---VYHGSLASRQMIQQYEMYC 627
Query: 679 RDSRARVLS---TYDIVITTYSLVAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAWARII 735
+DSR R++ +D +ITT+ ++ + P L I W +I
Sbjct: 628 KDSRGRLIPGAYKFDALITTFEMILSDCPE--------------------LREIEWRCVI 667
Query: 736 LDEAHNVKNPRVQTSIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPF-DEFNLW 794
+DEAH +KN + ++ + + +TGTP+QN + +++SLL FL S F E
Sbjct: 668 IDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSQFPSESEFL 727
Query: 795 RSQVDNGSKKGGERLSILTKSLLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEETV 854
+ D +++ ++L + K ++LRR K+ ++ P ++ + ++L+ ++
Sbjct: 728 KDFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAP------KQETIIEVELTNIQKKY 781
Query: 855 YNVFFARSRSALQSYLKRHESRGNQSGRSPNNPFSRVALEFGSEEPRHSEAADSPRSSTV 914
Y ++ S L S+G PN
Sbjct: 782 YRAILEKNFSFL--------SKGAGHTNMPN----------------------------- 804
Query: 915 HILSQLLRLRQCCCHLSLLKSALDPMELKGEGLVLSLEEQLSALTLSELRDSEPSSTVSL 974
+L+ ++ LR+CC H L+ A EE++ L+E R++ +
Sbjct: 805 -LLNTMMELRKCCNHPYLINGA---------------EEKI----LTEFREA----CHII 840
Query: 975 NGTFFKMELFEGMRESTKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGL 1034
F + + I LL +L+A K +I SQ L ++ +L +
Sbjct: 841 PHDFHLQAMVRSAGKLVLIDKLLPKLKA-----GGHKVLIFSQMVRCLDILEDYLIQRRY 895
Query: 1035 TYATIDGSVNPKQRMDLVEAFNHSRGPQ-VMLISLLAGGVGLNLTGGNHLFLLDMHWNPS 1093
Y IDG V R ++ F+ + V L+ AGG+G+NLT + + D WNP
Sbjct: 896 LYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQ 955
Query: 1094 LEDQACDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVL---SGSGESVT 1149
+ QA R +R+GQ K V ++R + + E ++ K L K VL SG ++T
Sbjct: 956 NDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRDGNIT 1014
>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
sapiens]
Length = 1710
Score = 134 bits (338), Expect = 4e-31
Identities = 142/579 (24%), Positives = 237/579 (40%), Gaps = 135/579 (23%)
Query: 573 HQKQALAWLLWRESQKPQGGILADDMGLGKTLTMIALILTQKNQEKKEEKEKSTALTWLS 632
+Q L WL K ILAD+MGLGKT+ I+ L +L
Sbjct: 484 YQLNGLNWLA-HSWCKGNSCILADEMGLGKTIQTISF------------------LNYLF 524
Query: 633 KDDSCDFTSHGT-LIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPNRDSRARVLST--- 688
+ +G L++ P S + W+ E++ + VYL +R+ T
Sbjct: 525 HEHQL----YGPFLLVVPLSTLTSWQREIQTWASQMNAVVYLGDINSRNMIRTHEWTHHQ 580
Query: 689 -----YDIVITTYSLVAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAWARIILDEAHNVK 743
++I++TTY ++ K+ +A + G N WA I +DEAH +K
Sbjct: 581 TKRLKFNILLTTYEILLKD------KAFLGGLN--------------WAFIGVDEAHRLK 620
Query: 744 NPRVQTSIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQVDNGSK 803
N + ++ R +TGTP+QN+L +++SLL F+ F + + + G +
Sbjct: 621 NDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKGRE 680
Query: 804 KGGERLSILTKSLLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYNVFFARSR 863
G L + LLRR K ++ + LP + Q+ +++S ++ Y R+
Sbjct: 681 YGYASLHKELEPFLLRRVKKDVEKS------LPAKVEQILRMEMSALQKQYYKWILTRNY 734
Query: 864 SALQSYLKRHESRGNQSGRSPNNPFSRVALEFGSEEPRHSEAADSPRSSTVHILSQLLRL 923
AL S+G+ SG L+ ++ L
Sbjct: 735 KALSK-----GSKGSTSG----------------------------------FLNIMMEL 755
Query: 924 RQCCCHLSLLKSALDPMELKGEGLVLSLEEQLSALTLSELRDSEPSSTVSLNGTFFKMEL 983
++CC H L+K P + N + K E
Sbjct: 756 KKCCNHCYLIKP--------------------------------PDN----NEFYNKQEA 779
Query: 984 FEGMRESTKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYATIDGSV 1043
+ + S+ LL +L I+ + +I SQ ML ++A +LK + +DGS+
Sbjct: 780 LQHLIRSSGKLILLDKL-LIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSI 838
Query: 1044 NPKQRMDLVEAFNHSRGPQV-MLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRI 1102
+ R ++ FN L+S AGG+G+NL + + + D WNP + QA R
Sbjct: 839 KGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARA 898
Query: 1103 YRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVL 1141
+R+GQ+K V I+R V +G+VEE IL+ +KK L V+
Sbjct: 899 HRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVI 937
>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
sapiens]
Length = 1954
Score = 132 bits (331), Expect = 2e-30
Identities = 148/598 (24%), Positives = 246/598 (41%), Gaps = 122/598 (20%)
Query: 573 HQKQALAWLLWRESQKPQGGILADDMGLGKTLTMIALILTQKNQEKKEEKEKSTALTWLS 632
+Q + L WL + +Q ILAD+MGLGKT+ I + + KE K L
Sbjct: 703 YQLEGLNWLRFSWAQGTDT-ILADEMGLGKTVQTIVFLYSLY----KEGHSKGPYL---- 753
Query: 633 KDDSCDFTSHGTLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPNRDSRARVLSTYDIV 692
+ P S I +W+ E E + + V Y G +++SR+ +
Sbjct: 754 -------------VSAPLSTIINWEREFE--MWAPDFYVVTYTG-DKESRSVIRENEFSF 797
Query: 693 ITTYSLVAKEIPTNKQEAEIPGANLNVEGTSTPLLRI--------AWARIILDEAHNVKN 744
K++ K+E +I +V TS L+ I WA +++DEAH +KN
Sbjct: 798 EDNAIRSGKKVFRMKKEVQI---KFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKN 854
Query: 745 PRVQTSIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQVDNGSKK 804
+ + + + + +TGTP+QNNL +++ LL FL F+ + + + SK+
Sbjct: 855 NQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFADISKE 914
Query: 805 GG-ERLSILTKSLLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYNVFFARSR 863
++L L +LRR K + +P + + ++LS+ ++ Y R+
Sbjct: 915 DQIKKLHDLLGPHMLRRLKADVFKN------MPAKTELIVRVELSQMQKKYYKFILTRNF 968
Query: 864 SALQSYLKRHESRGNQSGRSPNNPFSRVALEFGSEEPRHSEAADSPRSSTVHILSQLLRL 923
AL S + GNQ V +L+ ++ L
Sbjct: 969 EALNS-----KGGGNQ----------------------------------VSLLNIMMDL 989
Query: 924 RQCCCHLSLLKSALDPMELKGEGLVLSLEEQLSALTLSELRDSEPSSTVSLNGTFFKMEL 983
++CC H L A + V NG++ L
Sbjct: 990 KKCCNHPYLFPVAA------------------------------VEAPVLPNGSYDGSSL 1019
Query: 984 FEGMRESTKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYATIDGSV 1043
+ + + +L +L + +I SQ T ML ++ L+ G Y IDG +
Sbjct: 1020 VKSSGKLMLLQKMLKKLR-----DEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGI 1074
Query: 1044 NPKQRMDLVEAFNHSRGPQV-MLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRI 1102
R + ++ FN Q L+S AGG+G+NL + + + D WNP + QA R
Sbjct: 1075 TGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRA 1134
Query: 1103 YRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQV----LSGSGESVTKLTLADL 1156
+R+GQ K V+I+RFV +VEE+I Q+ ++K L V L S+TK L D+
Sbjct: 1135 HRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDI 1192
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 131 bits (330), Expect = 3e-30
Identities = 143/580 (24%), Positives = 243/580 (41%), Gaps = 118/580 (20%)
Query: 573 HQKQALAWLLWRESQKPQGGILADDMGLGKTLTMIALILTQKNQEKKEEKEKSTALTWLS 632
+Q + L WL+ + GILAD+MGLGKT+ IALI T + K+
Sbjct: 757 YQIKGLEWLVSLYNNN-LNGILADEMGLGKTIQTIALI-TYLMEHKR------------- 801
Query: 633 KDDSCDFTSHGTLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPNRDSRARV----LST 688
+ LII P S + +W E +K S + Y G RA V
Sbjct: 802 -------INGPFLIIVPLSTLSNWAYEFDKWAPS--VVKVSYKGSPAARRAFVPQLRSGK 852
Query: 689 YDIVITTYSLVAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAWARIILDEAHNVKNPRVQ 748
+++++TTY + K+ L +I W +I+DE H +KN +
Sbjct: 853 FNVLLTTYEYIIKD--------------------KHILAKIRWKYMIVDEGHRMKNHHCK 892
Query: 749 -TSIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQVDNGSKKGGE 807
T + A R +TGTP+QN L ++++LL FL + F + + + GE
Sbjct: 893 LTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGE 952
Query: 808 RLSILTKS--LLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYNVFFARS--R 863
++ + + L++RR L R F L LK + + V +
Sbjct: 953 KVDLNEEETILIIRRLHKVL------------RPFLLRRLKKEVEAQLPEKVEYVIKCDM 1000
Query: 864 SALQSYLKRH-ESRGNQSGRSPNNPFSRVALEFGSEEPRHSEAADSPRSSTVHILSQLLR 922
SALQ L RH +++G V L GSE+ + + T +++ +++
Sbjct: 1001 SALQRVLYRHMQAKG-------------VLLTDGSEKDKKG------KGGTKTLMNTIMQ 1041
Query: 923 LRQCCCHLSLLKSALDPMELKGEGLVLSLEEQLSALTLSELRDSEPSSTVSLNGTFFKME 982
LR+ C H + + + S E L G ++
Sbjct: 1042 LRKICNHPYMFQHIEE-----------SFSEHLGFT----------------GGIVQGLD 1074
Query: 983 LFEGMRESTKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYATIDGS 1042
L+ + + +L +L A + K ++ Q T+++ ++ + G Y +DG+
Sbjct: 1075 LYRASGKFELLDRILPKLRA-----TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGT 1129
Query: 1043 VNPKQRMDLVEAFNHSRGPQ-VMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDR 1101
+ R L++ FN + L+S AGG+GLNL + + + D WNP + QA DR
Sbjct: 1130 TKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDR 1189
Query: 1102 IYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVL 1141
+R+GQQ +V + R +VEEKIL + K ++ ++V+
Sbjct: 1190 AHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI 1229
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 131 bits (330), Expect = 3e-30
Identities = 143/580 (24%), Positives = 243/580 (41%), Gaps = 118/580 (20%)
Query: 573 HQKQALAWLLWRESQKPQGGILADDMGLGKTLTMIALILTQKNQEKKEEKEKSTALTWLS 632
+Q + L WL+ + GILAD+MGLGKT+ IALI T + K+
Sbjct: 757 YQIKGLEWLVSLYNNN-LNGILADEMGLGKTIQTIALI-TYLMEHKR------------- 801
Query: 633 KDDSCDFTSHGTLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPNRDSRARV----LST 688
+ LII P S + +W E +K S + Y G RA V
Sbjct: 802 -------INGPFLIIVPLSTLSNWAYEFDKWAPS--VVKVSYKGSPAARRAFVPQLRSGK 852
Query: 689 YDIVITTYSLVAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAWARIILDEAHNVKNPRVQ 748
+++++TTY + K+ L +I W +I+DE H +KN +
Sbjct: 853 FNVLLTTYEYIIKD--------------------KHILAKIRWKYMIVDEGHRMKNHHCK 892
Query: 749 -TSIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQVDNGSKKGGE 807
T + A R +TGTP+QN L ++++LL FL + F + + + GE
Sbjct: 893 LTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGE 952
Query: 808 RLSILTKS--LLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYNVFFARS--R 863
++ + + L++RR L R F L LK + + V +
Sbjct: 953 KVDLNEEETILIIRRLHKVL------------RPFLLRRLKKEVEAQLPEKVEYVIKCDM 1000
Query: 864 SALQSYLKRH-ESRGNQSGRSPNNPFSRVALEFGSEEPRHSEAADSPRSSTVHILSQLLR 922
SALQ L RH +++G V L GSE+ + + T +++ +++
Sbjct: 1001 SALQRVLYRHMQAKG-------------VLLTDGSEKDKKG------KGGTKTLMNTIMQ 1041
Query: 923 LRQCCCHLSLLKSALDPMELKGEGLVLSLEEQLSALTLSELRDSEPSSTVSLNGTFFKME 982
LR+ C H + + + S E L G ++
Sbjct: 1042 LRKICNHPYMFQHIEE-----------SFSEHLGFT----------------GGIVQGLD 1074
Query: 983 LFEGMRESTKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYATIDGS 1042
L+ + + +L +L A + K ++ Q T+++ ++ + G Y +DG+
Sbjct: 1075 LYRASGKFELLDRILPKLRA-----TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGT 1129
Query: 1043 VNPKQRMDLVEAFNHSRGPQ-VMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDR 1101
+ R L++ FN + L+S AGG+GLNL + + + D WNP + QA DR
Sbjct: 1130 TKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDR 1189
Query: 1102 IYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVL 1141
+R+GQQ +V + R +VEEKIL + K ++ ++V+
Sbjct: 1190 AHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI 1229
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 131 bits (330), Expect = 3e-30
Identities = 143/580 (24%), Positives = 243/580 (41%), Gaps = 118/580 (20%)
Query: 573 HQKQALAWLLWRESQKPQGGILADDMGLGKTLTMIALILTQKNQEKKEEKEKSTALTWLS 632
+Q + L WL+ + GILAD+MGLGKT+ IALI T + K+
Sbjct: 757 YQIKGLEWLVSLYNNN-LNGILADEMGLGKTIQTIALI-TYLMEHKR------------- 801
Query: 633 KDDSCDFTSHGTLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPNRDSRARV----LST 688
+ LII P S + +W E +K S + Y G RA V
Sbjct: 802 -------INGPFLIIVPLSTLSNWAYEFDKWAPS--VVKVSYKGSPAARRAFVPQLRSGK 852
Query: 689 YDIVITTYSLVAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAWARIILDEAHNVKNPRVQ 748
+++++TTY + K+ L +I W +I+DE H +KN +
Sbjct: 853 FNVLLTTYEYIIKD--------------------KHILAKIRWKYMIVDEGHRMKNHHCK 892
Query: 749 -TSIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQVDNGSKKGGE 807
T + A R +TGTP+QN L ++++LL FL + F + + + GE
Sbjct: 893 LTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGE 952
Query: 808 RLSILTKS--LLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYNVFFARS--R 863
++ + + L++RR L R F L LK + + V +
Sbjct: 953 KVDLNEEETILIIRRLHKVL------------RPFLLRRLKKEVEAQLPEKVEYVIKCDM 1000
Query: 864 SALQSYLKRH-ESRGNQSGRSPNNPFSRVALEFGSEEPRHSEAADSPRSSTVHILSQLLR 922
SALQ L RH +++G V L GSE+ + + T +++ +++
Sbjct: 1001 SALQRVLYRHMQAKG-------------VLLTDGSEKDKKG------KGGTKTLMNTIMQ 1041
Query: 923 LRQCCCHLSLLKSALDPMELKGEGLVLSLEEQLSALTLSELRDSEPSSTVSLNGTFFKME 982
LR+ C H + + + S E L G ++
Sbjct: 1042 LRKICNHPYMFQHIEE-----------SFSEHLGFT----------------GGIVQGLD 1074
Query: 983 LFEGMRESTKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYATIDGS 1042
L+ + + +L +L A + K ++ Q T+++ ++ + G Y +DG+
Sbjct: 1075 LYRASGKFELLDRILPKLRA-----TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGT 1129
Query: 1043 VNPKQRMDLVEAFNHSRGPQ-VMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDR 1101
+ R L++ FN + L+S AGG+GLNL + + + D WNP + QA DR
Sbjct: 1130 TKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDR 1189
Query: 1102 IYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVL 1141
+R+GQQ +V + R +VEEKIL + K ++ ++V+
Sbjct: 1190 AHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI 1229
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 131 bits (330), Expect = 3e-30
Identities = 143/580 (24%), Positives = 243/580 (41%), Gaps = 118/580 (20%)
Query: 573 HQKQALAWLLWRESQKPQGGILADDMGLGKTLTMIALILTQKNQEKKEEKEKSTALTWLS 632
+Q + L WL+ + GILAD+MGLGKT+ IALI T + K+
Sbjct: 757 YQIKGLEWLVSLYNNN-LNGILADEMGLGKTIQTIALI-TYLMEHKR------------- 801
Query: 633 KDDSCDFTSHGTLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPNRDSRARV----LST 688
+ LII P S + +W E +K S + Y G RA V
Sbjct: 802 -------INGPFLIIVPLSTLSNWAYEFDKWAPS--VVKVSYKGSPAARRAFVPQLRSGK 852
Query: 689 YDIVITTYSLVAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAWARIILDEAHNVKNPRVQ 748
+++++TTY + K+ L +I W +I+DE H +KN +
Sbjct: 853 FNVLLTTYEYIIKD--------------------KHILAKIRWKYMIVDEGHRMKNHHCK 892
Query: 749 -TSIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQVDNGSKKGGE 807
T + A R +TGTP+QN L ++++LL FL + F + + + GE
Sbjct: 893 LTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGE 952
Query: 808 RLSILTKS--LLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYNVFFARS--R 863
++ + + L++RR L R F L LK + + V +
Sbjct: 953 KVDLNEEETILIIRRLHKVL------------RPFLLRRLKKEVEAQLPEKVEYVIKCDM 1000
Query: 864 SALQSYLKRH-ESRGNQSGRSPNNPFSRVALEFGSEEPRHSEAADSPRSSTVHILSQLLR 922
SALQ L RH +++G V L GSE+ + + T +++ +++
Sbjct: 1001 SALQRVLYRHMQAKG-------------VLLTDGSEKDKKG------KGGTKTLMNTIMQ 1041
Query: 923 LRQCCCHLSLLKSALDPMELKGEGLVLSLEEQLSALTLSELRDSEPSSTVSLNGTFFKME 982
LR+ C H + + + S E L G ++
Sbjct: 1042 LRKICNHPYMFQHIEE-----------SFSEHLGFT----------------GGIVQGLD 1074
Query: 983 LFEGMRESTKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYATIDGS 1042
L+ + + +L +L A + K ++ Q T+++ ++ + G Y +DG+
Sbjct: 1075 LYRASGKFELLDRILPKLRA-----TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGT 1129
Query: 1043 VNPKQRMDLVEAFNHSRGPQ-VMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDR 1101
+ R L++ FN + L+S AGG+GLNL + + + D WNP + QA DR
Sbjct: 1130 TKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDR 1189
Query: 1102 IYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVL 1141
+R+GQQ +V + R +VEEKIL + K ++ ++V+
Sbjct: 1190 AHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI 1229
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 131 bits (330), Expect = 3e-30
Identities = 143/580 (24%), Positives = 243/580 (41%), Gaps = 118/580 (20%)
Query: 573 HQKQALAWLLWRESQKPQGGILADDMGLGKTLTMIALILTQKNQEKKEEKEKSTALTWLS 632
+Q + L WL+ + GILAD+MGLGKT+ IALI T + K+
Sbjct: 757 YQIKGLEWLVSLYNNN-LNGILADEMGLGKTIQTIALI-TYLMEHKR------------- 801
Query: 633 KDDSCDFTSHGTLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPNRDSRARV----LST 688
+ LII P S + +W E +K S + Y G RA V
Sbjct: 802 -------INGPFLIIVPLSTLSNWAYEFDKWAPS--VVKVSYKGSPAARRAFVPQLRSGK 852
Query: 689 YDIVITTYSLVAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAWARIILDEAHNVKNPRVQ 748
+++++TTY + K+ L +I W +I+DE H +KN +
Sbjct: 853 FNVLLTTYEYIIKD--------------------KHILAKIRWKYMIVDEGHRMKNHHCK 892
Query: 749 -TSIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQVDNGSKKGGE 807
T + A R +TGTP+QN L ++++LL FL + F + + + GE
Sbjct: 893 LTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGE 952
Query: 808 RLSILTKS--LLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYNVFFARS--R 863
++ + + L++RR L R F L LK + + V +
Sbjct: 953 KVDLNEEETILIIRRLHKVL------------RPFLLRRLKKEVEAQLPEKVEYVIKCDM 1000
Query: 864 SALQSYLKRH-ESRGNQSGRSPNNPFSRVALEFGSEEPRHSEAADSPRSSTVHILSQLLR 922
SALQ L RH +++G V L GSE+ + + T +++ +++
Sbjct: 1001 SALQRVLYRHMQAKG-------------VLLTDGSEKDKKG------KGGTKTLMNTIMQ 1041
Query: 923 LRQCCCHLSLLKSALDPMELKGEGLVLSLEEQLSALTLSELRDSEPSSTVSLNGTFFKME 982
LR+ C H + + + S E L G ++
Sbjct: 1042 LRKICNHPYMFQHIEE-----------SFSEHLGFT----------------GGIVQGLD 1074
Query: 983 LFEGMRESTKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYATIDGS 1042
L+ + + +L +L A + K ++ Q T+++ ++ + G Y +DG+
Sbjct: 1075 LYRASGKFELLDRILPKLRA-----TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGT 1129
Query: 1043 VNPKQRMDLVEAFNHSRGPQ-VMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDR 1101
+ R L++ FN + L+S AGG+GLNL + + + D WNP + QA DR
Sbjct: 1130 TKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDR 1189
Query: 1102 IYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVL 1141
+R+GQQ +V + R +VEEKIL + K ++ ++V+
Sbjct: 1190 AHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI 1229
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 131 bits (330), Expect = 3e-30
Identities = 143/580 (24%), Positives = 243/580 (41%), Gaps = 118/580 (20%)
Query: 573 HQKQALAWLLWRESQKPQGGILADDMGLGKTLTMIALILTQKNQEKKEEKEKSTALTWLS 632
+Q + L WL+ + GILAD+MGLGKT+ IALI T + K+
Sbjct: 757 YQIKGLEWLVSLYNNN-LNGILADEMGLGKTIQTIALI-TYLMEHKR------------- 801
Query: 633 KDDSCDFTSHGTLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPNRDSRARV----LST 688
+ LII P S + +W E +K S + Y G RA V
Sbjct: 802 -------INGPFLIIVPLSTLSNWAYEFDKWAPS--VVKVSYKGSPAARRAFVPQLRSGK 852
Query: 689 YDIVITTYSLVAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAWARIILDEAHNVKNPRVQ 748
+++++TTY + K+ L +I W +I+DE H +KN +
Sbjct: 853 FNVLLTTYEYIIKD--------------------KHILAKIRWKYMIVDEGHRMKNHHCK 892
Query: 749 -TSIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQVDNGSKKGGE 807
T + A R +TGTP+QN L ++++LL FL + F + + + GE
Sbjct: 893 LTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGE 952
Query: 808 RLSILTKS--LLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYNVFFARS--R 863
++ + + L++RR L R F L LK + + V +
Sbjct: 953 KVDLNEEETILIIRRLHKVL------------RPFLLRRLKKEVEAQLPEKVEYVIKCDM 1000
Query: 864 SALQSYLKRH-ESRGNQSGRSPNNPFSRVALEFGSEEPRHSEAADSPRSSTVHILSQLLR 922
SALQ L RH +++G V L GSE+ + + T +++ +++
Sbjct: 1001 SALQRVLYRHMQAKG-------------VLLTDGSEKDKKG------KGGTKTLMNTIMQ 1041
Query: 923 LRQCCCHLSLLKSALDPMELKGEGLVLSLEEQLSALTLSELRDSEPSSTVSLNGTFFKME 982
LR+ C H + + + S E L G ++
Sbjct: 1042 LRKICNHPYMFQHIEE-----------SFSEHLGFT----------------GGIVQGLD 1074
Query: 983 LFEGMRESTKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYATIDGS 1042
L+ + + +L +L A + K ++ Q T+++ ++ + G Y +DG+
Sbjct: 1075 LYRASGKFELLDRILPKLRA-----TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGT 1129
Query: 1043 VNPKQRMDLVEAFNHSRGPQ-VMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDR 1101
+ R L++ FN + L+S AGG+GLNL + + + D WNP + QA DR
Sbjct: 1130 TKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDR 1189
Query: 1102 IYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVL 1141
+R+GQQ +V + R +VEEKIL + K ++ ++V+
Sbjct: 1190 AHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI 1229
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 131 bits (330), Expect = 3e-30
Identities = 143/580 (24%), Positives = 243/580 (41%), Gaps = 118/580 (20%)
Query: 573 HQKQALAWLLWRESQKPQGGILADDMGLGKTLTMIALILTQKNQEKKEEKEKSTALTWLS 632
+Q + L WL+ + GILAD+MGLGKT+ IALI T + K+
Sbjct: 757 YQIKGLEWLVSLYNNN-LNGILADEMGLGKTIQTIALI-TYLMEHKR------------- 801
Query: 633 KDDSCDFTSHGTLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPNRDSRARV----LST 688
+ LII P S + +W E +K S + Y G RA V
Sbjct: 802 -------INGPFLIIVPLSTLSNWAYEFDKWAPS--VVKVSYKGSPAARRAFVPQLRSGK 852
Query: 689 YDIVITTYSLVAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAWARIILDEAHNVKNPRVQ 748
+++++TTY + K+ L +I W +I+DE H +KN +
Sbjct: 853 FNVLLTTYEYIIKD--------------------KHILAKIRWKYMIVDEGHRMKNHHCK 892
Query: 749 -TSIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQVDNGSKKGGE 807
T + A R +TGTP+QN L ++++LL FL + F + + + GE
Sbjct: 893 LTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGE 952
Query: 808 RLSILTKS--LLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYNVFFARS--R 863
++ + + L++RR L R F L LK + + V +
Sbjct: 953 KVDLNEEETILIIRRLHKVL------------RPFLLRRLKKEVEAQLPEKVEYVIKCDM 1000
Query: 864 SALQSYLKRH-ESRGNQSGRSPNNPFSRVALEFGSEEPRHSEAADSPRSSTVHILSQLLR 922
SALQ L RH +++G V L GSE+ + + T +++ +++
Sbjct: 1001 SALQRVLYRHMQAKG-------------VLLTDGSEKDKKG------KGGTKTLMNTIMQ 1041
Query: 923 LRQCCCHLSLLKSALDPMELKGEGLVLSLEEQLSALTLSELRDSEPSSTVSLNGTFFKME 982
LR+ C H + + + S E L G ++
Sbjct: 1042 LRKICNHPYMFQHIEE-----------SFSEHLGFT----------------GGIVQGLD 1074
Query: 983 LFEGMRESTKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYATIDGS 1042
L+ + + +L +L A + K ++ Q T+++ ++ + G Y +DG+
Sbjct: 1075 LYRASGKFELLDRILPKLRA-----TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGT 1129
Query: 1043 VNPKQRMDLVEAFNHSRGPQ-VMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDR 1101
+ R L++ FN + L+S AGG+GLNL + + + D WNP + QA DR
Sbjct: 1130 TKAEDRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDR 1189
Query: 1102 IYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVL 1141
+R+GQQ +V + R +VEEKIL + K ++ ++V+
Sbjct: 1190 AHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI 1229
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 130 bits (328), Expect = 6e-30
Identities = 142/579 (24%), Positives = 240/579 (41%), Gaps = 116/579 (20%)
Query: 573 HQKQALAWLLWRESQKPQGGILADDMGLGKTLTMIALILTQKNQEKKEEKEKSTALTWLS 632
+Q Q L W++ + GILAD+MGLGKT+ IALI T + K+
Sbjct: 727 YQLQGLEWMVSLYNNN-LNGILADEMGLGKTIQTIALI-TYLMEHKR------------- 771
Query: 633 KDDSCDFTSHGTLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPNRDSRARVLST--YD 690
+ LII P S + +W E +K S Y R S L + ++
Sbjct: 772 -------LNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFN 824
Query: 691 IVITTYSLVAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAWARIILDEAHNVKNPRVQ-T 749
+++TTY + K+ L +I W +I+DE H +KN + T
Sbjct: 825 VLLTTYEYIIKD--------------------KHILAKIRWKYMIVDEGHRMKNHHCKLT 864
Query: 750 SIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQVDNGSKKGGERL 809
+ A R +TGTP+QN L ++++LL FL + F + + + GER+
Sbjct: 865 QVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERV 924
Query: 810 SILTKS--LLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYNVFFARS--RSA 865
+ + L++RR L R F L LK + + V + SA
Sbjct: 925 DLNEEETILIIRRLHKVL------------RPFLLRRLKKEVESQLPEKVEYVIKCDMSA 972
Query: 866 LQSYLKRH-ESRGNQSGRSPNNPFSRVALEFGSEEPRHSEAADSPRSSTVHILSQLLRLR 924
LQ L RH +++G + L GSE+ + + +T+ ++LR
Sbjct: 973 LQKILYRHMQAKG-------------ILLTDGSEKDKKGKGGAKTLMNTI------MQLR 1013
Query: 925 QCCCHLSLLKSALDPMELKGEGLVLSLEEQLSALTLSELRDSEPSSTVSLNGTFFKMELF 984
+ C H + + + +S NG EL+
Sbjct: 1014 KICNHPYMFQ---------------------------HIEESFAEHLGYSNGVINGAELY 1046
Query: 985 EGMRESTKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYATIDGSVN 1044
+ + +L +L A + + ++ Q T+++ ++ + Y +DG+
Sbjct: 1047 RASGKFELLDRILPKLRA-----TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTK 1101
Query: 1045 PKQRMDLVEAFNHSRGPQ--VMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRI 1102
+ R L++ FN G Q + L+S AGG+GLNL + + + D WNP + QA DR
Sbjct: 1102 SEDRAALLKKFNEP-GSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRA 1160
Query: 1103 YRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVL 1141
+R+GQQ +V + R +VEEKIL + K ++ ++V+
Sbjct: 1161 HRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI 1199
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 130 bits (328), Expect = 6e-30
Identities = 142/579 (24%), Positives = 240/579 (41%), Gaps = 116/579 (20%)
Query: 573 HQKQALAWLLWRESQKPQGGILADDMGLGKTLTMIALILTQKNQEKKEEKEKSTALTWLS 632
+Q Q L W++ + GILAD+MGLGKT+ IALI T + K+
Sbjct: 727 YQLQGLEWMVSLYNNN-LNGILADEMGLGKTIQTIALI-TYLMEHKR------------- 771
Query: 633 KDDSCDFTSHGTLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPNRDSRARVLST--YD 690
+ LII P S + +W E +K S Y R S L + ++
Sbjct: 772 -------LNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPAMRRSLVPQLRSGKFN 824
Query: 691 IVITTYSLVAKEIPTNKQEAEIPGANLNVEGTSTPLLRIAWARIILDEAHNVKNPRVQ-T 749
+++TTY + K+ L +I W +I+DE H +KN + T
Sbjct: 825 VLLTTYEYIIKD--------------------KHILAKIRWKYMIVDEGHRMKNHHCKLT 864
Query: 750 SIAVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLWRSQVDNGSKKGGERL 809
+ A R +TGTP+QN L ++++LL FL + F + + + GER+
Sbjct: 865 QVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGERV 924
Query: 810 SILTKS--LLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYNVFFARS--RSA 865
+ + L++RR L R F L LK + + V + SA
Sbjct: 925 DLNEEETILIIRRLHKVL------------RPFLLRRLKKEVESQLPEKVEYVIKCDMSA 972
Query: 866 LQSYLKRH-ESRGNQSGRSPNNPFSRVALEFGSEEPRHSEAADSPRSSTVHILSQLLRLR 924
LQ L RH +++G + L GSE+ + + +T+ ++LR
Sbjct: 973 LQKILYRHMQAKG-------------ILLTDGSEKDKKGKGGAKTLMNTI------MQLR 1013
Query: 925 QCCCHLSLLKSALDPMELKGEGLVLSLEEQLSALTLSELRDSEPSSTVSLNGTFFKMELF 984
+ C H + + + +S NG EL+
Sbjct: 1014 KICNHPYMFQ---------------------------HIEESFAEHLGYSNGVINGAELY 1046
Query: 985 EGMRESTKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYATIDGSVN 1044
+ + +L +L A + + ++ Q T+++ ++ + Y +DG+
Sbjct: 1047 RASGKFELLDRILPKLRA-----TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTK 1101
Query: 1045 PKQRMDLVEAFNHSRGPQ--VMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRI 1102
+ R L++ FN G Q + L+S AGG+GLNL + + + D WNP + QA DR
Sbjct: 1102 SEDRAALLKKFNEP-GSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRA 1160
Query: 1103 YRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVL 1141
+R+GQQ +V + R +VEEKIL + K ++ ++V+
Sbjct: 1161 HRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVI 1199
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.130 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,814,005
Number of Sequences: 37866
Number of extensions: 2379683
Number of successful extensions: 11406
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 417
Number of HSP's that attempted gapping in prelim test: 9600
Number of HSP's gapped (non-prelim): 1671
length of query: 1162
length of database: 18,247,518
effective HSP length: 113
effective length of query: 1049
effective length of database: 13,968,660
effective search space: 14653124340
effective search space used: 14653124340
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.