Search of human proteins with 40556389

Search of human proteins with 40556389

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|40556389 zona pellucida binding protein 2 isoform 2 [Homo
sapiens]
         (338 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|40556389 zona pellucida binding protein 2 isoform 2 [Homo sap...   712   0.0  
gi|84875535 zona pellucida binding protein 2 isoform 1 [Homo sap...   651   0.0  
gi|229577315 zona pellucida binding protein isoform 2 [Homo sapi...   209   2e-54
gi|229577313 zona pellucida binding protein isoform 1 [Homo sapi...   207   1e-53
gi|110431348 deleted in colorectal carcinoma [Homo sapiens]            36   0.056
gi|109150416 peroxidasin [Homo sapiens]                                35   0.12 
gi|126517478 peroxidasin homolog-like [Homo sapiens]                   33   0.28 
gi|157426829 leucine rich repeat and Ig domain containing 3 [Hom...    32   0.81 
gi|40217805 nucleolar protein 9 [Homo sapiens]                         32   0.81 
gi|190358539 mitochondrial glycerol 3-phosphate acyltransferase ...    31   1.4  
gi|20127422 Down syndrome cell adhesion molecule isoform CHD2-42...    31   1.4  
gi|237858679 neurofascin isoform 3 precursor [Homo sapiens]            31   1.8  
gi|237858677 neurofascin isoform 2 precursor [Homo sapiens]            31   1.8  
gi|89903008 neurofascin isoform 4 precursor [Homo sapiens]             31   1.8  
gi|237858682 neurofascin isoform 6 precursor [Homo sapiens]            31   1.8  
gi|237858680 neurofascin isoform 5 precursor [Homo sapiens]            31   1.8  
gi|237858675 neurofascin isoform 1 precursor [Homo sapiens]            31   1.8  
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ...    31   1.8  
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ...    31   1.8  
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ...    31   1.8  
gi|22749183 leucine rich repeat and Ig domain containing 2 [Homo...    29   5.2  
gi|169178458 PREDICTED: hemicentin 2 [Homo sapiens]                    29   6.8  
gi|239749684 PREDICTED: hemicentin 2 [Homo sapiens]                    29   6.8  
gi|169177000 PREDICTED: hemicentin 2 [Homo sapiens]                    29   6.8  
gi|143770880 laminin, beta 4 [Homo sapiens]                            29   6.8  
gi|169167609 PREDICTED: hypothetical protein [Homo sapiens]            28   8.9  
gi|55741571 leucine rich repeat and fibronectin type III domain ...    28   8.9  
gi|28373126 contactin 4 isoform c precursor [Homo sapiens]             28   8.9  
gi|28373122 contactin 4 isoform a precursor [Homo sapiens]             28   8.9  
gi|23200041 tumor necrosis factor receptor superfamily, member 1...    28   8.9  

>gi|40556389 zona pellucida binding protein 2 isoform 2 [Homo
           sapiens]
          Length = 338

 Score =  712 bits (1837), Expect = 0.0
 Identities = 338/338 (100%), Positives = 338/338 (100%)

Query: 1   MMRTCVLLSAVLWCLTGVQCPRFTLFNKKGFIYGKTGQPDKIYVELHQNSPVLICMDFKL 60
           MMRTCVLLSAVLWCLTGVQCPRFTLFNKKGFIYGKTGQPDKIYVELHQNSPVLICMDFKL
Sbjct: 1   MMRTCVLLSAVLWCLTGVQCPRFTLFNKKGFIYGKTGQPDKIYVELHQNSPVLICMDFKL 60

Query: 61  SKKEIVDPTYLWIGPNEKTLTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAET 120
           SKKEIVDPTYLWIGPNEKTLTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAET
Sbjct: 61  SKKEIVDPTYLWIGPNEKTLTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAET 120

Query: 121 QEEKTVKKRYDFMVFAYREPDYSYQMAVRFTTRSCIGRYNDVFFRVLKKILDSLISDLSC 180
           QEEKTVKKRYDFMVFAYREPDYSYQMAVRFTTRSCIGRYNDVFFRVLKKILDSLISDLSC
Sbjct: 121 QEEKTVKKRYDFMVFAYREPDYSYQMAVRFTTRSCIGRYNDVFFRVLKKILDSLISDLSC 180

Query: 181 HVIEPSYKCHSVEIPEHGLIHELFIAFQVNPFAPGWKGACNGSVDCEDTTNHNILQARDR 240
           HVIEPSYKCHSVEIPEHGLIHELFIAFQVNPFAPGWKGACNGSVDCEDTTNHNILQARDR
Sbjct: 181 HVIEPSYKCHSVEIPEHGLIHELFIAFQVNPFAPGWKGACNGSVDCEDTTNHNILQARDR 240

Query: 241 IEDFFRSQAYIFYHNFNKTLPAMHFVDHSLQVVRLDSCRPGFGKNERLHSNCASCCVVCS 300
           IEDFFRSQAYIFYHNFNKTLPAMHFVDHSLQVVRLDSCRPGFGKNERLHSNCASCCVVCS
Sbjct: 241 IEDFFRSQAYIFYHNFNKTLPAMHFVDHSLQVVRLDSCRPGFGKNERLHSNCASCCVVCS 300

Query: 301 PATFSPDVNVTCQTCVSVLTYGAKSCPQTSNKNQQYED 338
           PATFSPDVNVTCQTCVSVLTYGAKSCPQTSNKNQQYED
Sbjct: 301 PATFSPDVNVTCQTCVSVLTYGAKSCPQTSNKNQQYED 338


>gi|84875535 zona pellucida binding protein 2 isoform 1 [Homo
           sapiens]
          Length = 316

 Score =  651 bits (1680), Expect = 0.0
 Identities = 316/338 (93%), Positives = 316/338 (93%), Gaps = 22/338 (6%)

Query: 1   MMRTCVLLSAVLWCLTGVQCPRFTLFNKKGFIYGKTGQPDKIYVELHQNSPVLICMDFKL 60
           MMRTCVLLSAVLWCLTG                      DKIYVELHQNSPVLICMDFKL
Sbjct: 1   MMRTCVLLSAVLWCLTG----------------------DKIYVELHQNSPVLICMDFKL 38

Query: 61  SKKEIVDPTYLWIGPNEKTLTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAET 120
           SKKEIVDPTYLWIGPNEKTLTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAET
Sbjct: 39  SKKEIVDPTYLWIGPNEKTLTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAET 98

Query: 121 QEEKTVKKRYDFMVFAYREPDYSYQMAVRFTTRSCIGRYNDVFFRVLKKILDSLISDLSC 180
           QEEKTVKKRYDFMVFAYREPDYSYQMAVRFTTRSCIGRYNDVFFRVLKKILDSLISDLSC
Sbjct: 99  QEEKTVKKRYDFMVFAYREPDYSYQMAVRFTTRSCIGRYNDVFFRVLKKILDSLISDLSC 158

Query: 181 HVIEPSYKCHSVEIPEHGLIHELFIAFQVNPFAPGWKGACNGSVDCEDTTNHNILQARDR 240
           HVIEPSYKCHSVEIPEHGLIHELFIAFQVNPFAPGWKGACNGSVDCEDTTNHNILQARDR
Sbjct: 159 HVIEPSYKCHSVEIPEHGLIHELFIAFQVNPFAPGWKGACNGSVDCEDTTNHNILQARDR 218

Query: 241 IEDFFRSQAYIFYHNFNKTLPAMHFVDHSLQVVRLDSCRPGFGKNERLHSNCASCCVVCS 300
           IEDFFRSQAYIFYHNFNKTLPAMHFVDHSLQVVRLDSCRPGFGKNERLHSNCASCCVVCS
Sbjct: 219 IEDFFRSQAYIFYHNFNKTLPAMHFVDHSLQVVRLDSCRPGFGKNERLHSNCASCCVVCS 278

Query: 301 PATFSPDVNVTCQTCVSVLTYGAKSCPQTSNKNQQYED 338
           PATFSPDVNVTCQTCVSVLTYGAKSCPQTSNKNQQYED
Sbjct: 279 PATFSPDVNVTCQTCVSVLTYGAKSCPQTSNKNQQYED 316


>gi|229577315 zona pellucida binding protein isoform 2 [Homo
           sapiens]
          Length = 350

 Score =  209 bits (533), Expect = 2e-54
 Identities = 118/320 (36%), Positives = 173/320 (54%), Gaps = 28/320 (8%)

Query: 18  VQCPR-FTLFNKKGFIYGKTGQPDKIYVELHQNSPVLICMDFKLSKKEIVDPTYLWIGPN 76
           V+ PR F L      I G T  P K YV LHQ SP ++C+  +L   E++DP++ W GP 
Sbjct: 47  VRLPRAFRLTKDSVKIVGSTSFPVKAYVMLHQKSPHVLCVTQQLRNAELIDPSFQWYGPK 106

Query: 77  EKTLTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAETQEEKTVKKRYDFMVFA 136
            K ++ N    IT TG L+ ++F E +SG+YTC L YK     T EE   + +  + ++A
Sbjct: 107 GKVVSENRTAQITSTGSLVFQNFEESMSGIYTCFLEYK----PTVEEIVKRLQLKYAIYA 162

Query: 137 YREPDYSYQMAVRFTTRSCIGRYNDVFFRVLKKILDSLISDLSCHVIEPSYKCHSVEIPE 196
           YREP Y YQ   R+    C   YN  F + L +IL  L+ DLSC +     +CH V++  
Sbjct: 163 YREPHYYYQFTARYHAAPCNSIYNISFEKKLLQILSKLLLDLSCEISLLKSECHRVKMQR 222

Query: 197 HGLIHELFIAFQVNPFAPGWKGACNGSVDCED----TTNHN------ILQARDRIEDFFR 246
            GL +ELF AF V+            S+D E      T+HN      + +A++ IE FF 
Sbjct: 223 AGLQNELFFAFSVS------------SLDTEKGPKRCTDHNCEPYKRLFKAKNLIERFFN 270

Query: 247 SQAYIFYHNFNKTLPAMHFVDHSLQVVRLDSCRPGFGKNERLHSNCASCCVVCSPATFSP 306
            Q  I      + LP +++++ +LQ+V ++ C PG+G N + H  C  CCV+CSP +++P
Sbjct: 271 QQVEILGRRAEQ-LPQIYYIEGTLQMVWINRCFPGYGMNVQQHPKCPECCVICSPGSYNP 329

Query: 307 DVNVTCQTCVSVLTYGAKSC 326
              + C  C S L YGAK+C
Sbjct: 330 RDGIHCLQCNSSLVYGAKTC 349


>gi|229577313 zona pellucida binding protein isoform 1 [Homo
           sapiens]
          Length = 351

 Score =  207 bits (526), Expect = 1e-53
 Identities = 119/321 (37%), Positives = 174/321 (54%), Gaps = 29/321 (9%)

Query: 18  VQCPR-FTLFNKKGFIYGKTGQPDKIYVELHQNSPVLICMDFKLSKKEIVDPTYLWIGPN 76
           V+ PR F L      I G T  P K YV LHQ SP ++C+  +L   E++DP++ W GP 
Sbjct: 47  VRLPRAFRLTKDSVKIVGSTSFPVKAYVMLHQKSPHVLCVTQQLRNAELIDPSFQWYGPK 106

Query: 77  EKTLTGNNRI-NITETGQLMVKDFLEPLSGLYTCTLSYKTVKAETQEEKTVKKRYDFMVF 135
            K ++  NR   IT TG L+ ++F E +SG+YTC L YK     T EE   + +  + ++
Sbjct: 107 GKVVSVENRTAQITSTGSLVFQNFEESMSGIYTCFLEYKP----TVEEIVKRLQLKYAIY 162

Query: 136 AYREPDYSYQMAVRFTTRSCIGRYNDVFFRVLKKILDSLISDLSCHVIEPSYKCHSVEIP 195
           AYREP Y YQ   R+    C   YN  F + L +IL  L+ DLSC +     +CH V++ 
Sbjct: 163 AYREPHYYYQFTARYHAAPCNSIYNISFEKKLLQILSKLLLDLSCEISLLKSECHRVKMQ 222

Query: 196 EHGLIHELFIAFQVNPFAPGWKGACNGSVDCED----TTNHN------ILQARDRIEDFF 245
             GL +ELF AF V+            S+D E      T+HN      + +A++ IE FF
Sbjct: 223 RAGLQNELFFAFSVS------------SLDTEKGPKRCTDHNCEPYKRLFKAKNLIERFF 270

Query: 246 RSQAYIFYHNFNKTLPAMHFVDHSLQVVRLDSCRPGFGKNERLHSNCASCCVVCSPATFS 305
             Q  I      + LP +++++ +LQ+V ++ C PG+G N + H  C  CCV+CSP +++
Sbjct: 271 NQQVEILGRRAEQ-LPQIYYIEGTLQMVWINRCFPGYGMNVQQHPKCPECCVICSPGSYN 329

Query: 306 PDVNVTCQTCVSVLTYGAKSC 326
           P   + C  C S L YGAK+C
Sbjct: 330 PRDGIHCLQCNSSLVYGAKTC 350


>gi|110431348 deleted in colorectal carcinoma [Homo sapiens]
          Length = 1447

 Score = 35.8 bits (81), Expect = 0.056
 Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 5/86 (5%)

Query: 68  PTYLWIGPNEKTLTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAETQEEKTVK 127
           P++ W+   E     + + ++     L++ +  +  SG+YTC ++YK        E TV 
Sbjct: 269 PSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGMYTCVVTYKNENISASAELTVL 328

Query: 128 KRYDFM-----VFAYREPDYSYQMAV 148
               F+     ++AY   D  ++  V
Sbjct: 329 VPPWFLNHPSNLYAYESMDIEFECTV 354


>gi|109150416 peroxidasin [Homo sapiens]
          Length = 1479

 Score = 34.7 bits (78), Expect = 0.12
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)

Query: 68  PTYLWI-GPNEKTLTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAETQE 122
           P  +W+   NE ++  ++R+N+ + G LM+++  E   G+Y C       + +TQE
Sbjct: 275 PEIIWLRNNNELSMKTDSRLNLLDDGTLMIQNTQETDQGIYQCMAKNVAGEVKTQE 330



 Score = 30.0 bits (66), Expect = 3.1
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 4/80 (5%)

Query: 33  YGKTGQPDKIYVELHQNSPVLI--CMDFKLSKKEIVDPTYLWIGPNEKTLTGNNRINITE 90
           +G   +P   +V   QN+ VL+   +  + S      P   W   +   L  + R+NIT 
Sbjct: 336 FGSPARPT--FVIQPQNTEVLVGESVTLECSATGHPPPRISWTRGDRTPLPVDPRVNITP 393

Query: 91  TGQLMVKDFLEPLSGLYTCT 110
           +G L +++ ++  SG Y C+
Sbjct: 394 SGGLYIQNVVQGDSGEYACS 413


>gi|126517478 peroxidasin homolog-like [Homo sapiens]
          Length = 1463

 Score = 33.5 bits (75), Expect = 0.28
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 68  PTYLWIGPNEKT-LTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAETQ 121
           P  +WI  N    L  + R+N+ + G LM+++  E   G+Y C       +A+TQ
Sbjct: 263 PEIIWIHNNHSLDLEDDTRLNVFDDGTLMIRNTRESDQGVYQCMARNSAGEAKTQ 317


>gi|157426829 leucine rich repeat and Ig domain containing 3 [Homo
           sapiens]
          Length = 592

 Score = 32.0 bits (71), Expect = 0.81
 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 12/85 (14%)

Query: 68  PTYLWIGPNEK--TLTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYK----------T 115
           PT  W+ P  +  T T   R  +   G L ++D     SG YTC  S            T
Sbjct: 437 PTVAWVTPQHRPVTATSAGRARVLPGGTLEIQDARPQDSGTYTCVASNAGGNDTYFATLT 496

Query: 116 VKAETQEEKTVKKRYDFMVFAYREP 140
           V+ E    +T  + ++  + A R P
Sbjct: 497 VRPEPAANRTPGEAHNETLAALRAP 521


>gi|40217805 nucleolar protein 9 [Homo sapiens]
          Length = 702

 Score = 32.0 bits (71), Expect = 0.81
 Identities = 45/174 (25%), Positives = 65/174 (37%), Gaps = 39/174 (22%)

Query: 95  MVKDFLEPLSGLYTCTLSYKTVKAETQEEKTVKKRYDFMVFA--YREPDYSYQMAVRFTT 152
           +   +++ + GLYT        K++T   K   +R+    FA      D   +  V FT 
Sbjct: 445 LTPQYVDDMDGLYT--------KSKT---KMRNRRFRLAAFADALEFADEEKESPVEFTG 493

Query: 153 RSCIGRYNDVFFRVL-------KKILDSL-----ISDLSCHVIEPSYKCHSV---EIP-- 195
              IG Y D  FR+         KIL  L     +S L   + +P    HS+   ++P  
Sbjct: 494 HKLIGVYTDFAFRITPRNRESHNKILRDLSILSYLSQLQPPMPKPLSPLHSLTPYQVPFN 553

Query: 196 ------EHGLIHELFIAFQVNPFAPGWKGACNGSVDCEDTTNHNILQARDRIED 243
                  H  +    I + VN     W G C    D    TN  IL A+  I D
Sbjct: 554 AVALRITHSDVAPTHILYAVN---ASWVGLCKIQDDVRGYTNGPILLAQTPICD 604


>gi|190358539 mitochondrial glycerol 3-phosphate acyltransferase
           [Homo sapiens]
          Length = 828

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 12/91 (13%)

Query: 247 SQAYIFYHNFNKTLPAMHFVD--HSLQVVRLDSCRPGFGKNERLHSNCASCCVVCSPATF 304
           S A IF HNF+  +P   ++   H   + R +       +N  +++  A+ C+V +    
Sbjct: 733 SSAAIFVHNFSGPVPEPEYLQKLHKYLITRTE-------RNVAVYAESATYCLVKNAVKM 785

Query: 305 SPDVNV---TCQTCVSVLTYGAKSCPQTSNK 332
             D+ V   T Q  VSVL   +   PQ + +
Sbjct: 786 FKDIGVFKETKQKRVSVLELSSTFLPQCNRQ 816


>gi|20127422 Down syndrome cell adhesion molecule isoform CHD2-42
           precursor [Homo sapiens]
          Length = 2012

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 75  PNEKTLTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAETQEEKTVKKRYDFMV 134
           P  + +  N RI +   G L++K  +E  SG Y C +S   V A+  +   +  +   M+
Sbjct: 732 PQFQPIALNGRIQVLSNGSLLIKHVVEEDSGYYLCKVS-NDVGADVSKSMYLTVKIPAMI 790

Query: 135 FAY 137
            +Y
Sbjct: 791 TSY 793


>gi|237858679 neurofascin isoform 3 precursor [Homo sapiens]
          Length = 1174

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 17/60 (28%), Positives = 25/60 (41%)

Query: 68  PTYLWIGPNEKTLTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAETQEEKTVK 127
           PT  W    + +       ++ E G L +K   +   G+YTC  +    KAE Q    VK
Sbjct: 471 PTLRWFKNGQGSNLDGGNYHVYENGSLEIKMIRKEDQGIYTCVATNILGKAENQVRLEVK 530


>gi|237858677 neurofascin isoform 2 precursor [Homo sapiens]
          Length = 1189

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 17/60 (28%), Positives = 25/60 (41%)

Query: 68  PTYLWIGPNEKTLTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAETQEEKTVK 127
           PT  W    + +       ++ E G L +K   +   G+YTC  +    KAE Q    VK
Sbjct: 471 PTLRWFKNGQGSNLDGGNYHVYENGSLEIKMIRKEDQGIYTCVATNILGKAENQVRLEVK 530


>gi|89903008 neurofascin isoform 4 precursor [Homo sapiens]
          Length = 1169

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 17/60 (28%), Positives = 25/60 (41%)

Query: 68  PTYLWIGPNEKTLTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAETQEEKTVK 127
           PT  W    + +       ++ E G L +K   +   G+YTC  +    KAE Q    VK
Sbjct: 471 PTLRWFKNGQGSNLDGGNYHVYENGSLEIKMIRKEDQGIYTCVATNILGKAENQVRLEVK 530


>gi|237858682 neurofascin isoform 6 precursor [Homo sapiens]
          Length = 613

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 17/60 (28%), Positives = 25/60 (41%)

Query: 68  PTYLWIGPNEKTLTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAETQEEKTVK 127
           PT  W    + +       ++ E G L +K   +   G+YTC  +    KAE Q    VK
Sbjct: 454 PTLRWFKNGQGSNLDGGNYHVYENGSLEIKMIRKEDQGIYTCVATNILGKAENQVRLEVK 513


>gi|237858680 neurofascin isoform 5 precursor [Homo sapiens]
          Length = 619

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 17/60 (28%), Positives = 25/60 (41%)

Query: 68  PTYLWIGPNEKTLTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAETQEEKTVK 127
           PT  W    + +       ++ E G L +K   +   G+YTC  +    KAE Q    VK
Sbjct: 460 PTLRWFKNGQGSNLDGGNYHVYENGSLEIKMIRKEDQGIYTCVATNILGKAENQVRLEVK 519


>gi|237858675 neurofascin isoform 1 precursor [Homo sapiens]
          Length = 1240

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 17/60 (28%), Positives = 25/60 (41%)

Query: 68  PTYLWIGPNEKTLTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAETQEEKTVK 127
           PT  W    + +       ++ E G L +K   +   G+YTC  +    KAE Q    VK
Sbjct: 460 PTLRWFKNGQGSNLDGGNYHVYENGSLEIKMIRKEDQGIYTCVATNILGKAENQVRLEVK 519


>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
            sapiens]
          Length = 1650

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 48   QNSPVLICMDFKLSKKEIVDPTYLWIGPNEKTLTGNNRI--NITETGQLMV 96
            Q+SP   C D KL   E+ D  Y W+ PN+       R+  N T  G+  V
Sbjct: 1478 QDSPARTCQDLKLCHPELPDGEY-WVDPNQGCARDAFRVFCNFTAGGETCV 1527


>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
            sapiens]
          Length = 1629

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 48   QNSPVLICMDFKLSKKEIVDPTYLWIGPNEKTLTGNNRI--NITETGQLMV 96
            Q+SP   C D KL   E+ D  Y W+ PN+       R+  N T  G+  V
Sbjct: 1457 QDSPARTCQDLKLCHPELPDGEY-WVDPNQGCARDAFRVFCNFTAGGETCV 1506


>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
            sapiens]
          Length = 1736

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 48   QNSPVLICMDFKLSKKEIVDPTYLWIGPNEKTLTGNNRI--NITETGQLMV 96
            Q+SP   C D KL   E+ D  Y W+ PN+       R+  N T  G+  V
Sbjct: 1564 QDSPARTCQDLKLCHPELPDGEY-WVDPNQGCARDAFRVFCNFTAGGETCV 1613


>gi|22749183 leucine rich repeat and Ig domain containing 2 [Homo
           sapiens]
          Length = 606

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 68  PTYLWIGPNEKTLT--GNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAETQEEKT 125
           P   W+ P  + +T   N R  +   G L ++   +  SG+Y C  S            T
Sbjct: 440 PVISWVTPRRRFITTKSNGRATVLGDGTLEIRFAQDQDSGMYVCIASNAAGNDTFTASLT 499

Query: 126 VKK-RYDFMVFAYREPDY 142
           VK    D  ++A R P Y
Sbjct: 500 VKGFASDRFLYANRTPMY 517


>gi|169178458 PREDICTED: hemicentin 2 [Homo sapiens]
          Length = 3874

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 14/60 (23%), Positives = 25/60 (41%)

Query: 67   DPTYLWIGPNEKTLTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAETQEEKTV 126
            +P   W    +       +  I  +G+L+VK+     +G YTCT      +A  +   T+
Sbjct: 2875 EPNITWDKDGQPVSGAEGKFTIQPSGELLVKNLEGQDAGTYTCTAENAVGRARRRVHLTI 2934


>gi|239749684 PREDICTED: hemicentin 2 [Homo sapiens]
          Length = 5065

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 14/60 (23%), Positives = 25/60 (41%)

Query: 67   DPTYLWIGPNEKTLTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAETQEEKTV 126
            +P   W    +       +  I  +G+L+VK+     +G YTCT      +A  +   T+
Sbjct: 4066 EPNITWDKDGQPVSGAEGKFTIQPSGELLVKNLEGQDAGTYTCTAENAVGRARRRVHLTI 4125


>gi|169177000 PREDICTED: hemicentin 2 [Homo sapiens]
          Length = 3783

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 14/60 (23%), Positives = 25/60 (41%)

Query: 67   DPTYLWIGPNEKTLTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVKAETQEEKTV 126
            +P   W    +       +  I  +G+L+VK+     +G YTCT      +A  +   T+
Sbjct: 2784 EPNITWDKDGQPVSGAEGKFTIQPSGELLVKNLEGQDAGTYTCTAENAVGRARRRVHLTI 2843


>gi|143770880 laminin, beta 4 [Homo sapiens]
          Length = 1761

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 267  DHSLQVVRLDSCRPGFGKNER-LHSNCASCCVVCSPATFSPDVNVTCQTC 315
            ++++ V   +SC    G+  R LH+   + C +C P  +   +N TC+ C
Sbjct: 973  NNNIDVTDPESCSRVTGECLRCLHNTQGANCQLCKPGHYGSALNQTCRRC 1022


>gi|169167609 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 260

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 280 PGFGKNERLHSNCASCCVVC 299
           PG   + R H +C+SCC  C
Sbjct: 113 PGLSSSRRRHRHCSSCCCRC 132


>gi|55741571 leucine rich repeat and fibronectin type III domain
           containing 2 [Homo sapiens]
          Length = 789

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 60  LSKKEIVDPTYL--WIGPNEKTLTGNNRINITETGQLMVKDFLEPLSGLYTCTLSYKTVK 117
           L  K I DP+ L  W+ P+++ +  ++R  + + G L +       SG +TC  +    +
Sbjct: 308 LKCKAIGDPSPLIHWVAPDDRLVGNSSRTAVYDNGTLDIFITTSQDSGAFTCIAANAAGE 367

Query: 118 AETQEEKTV 126
           A    E ++
Sbjct: 368 ATAMVEVSI 376


>gi|28373126 contactin 4 isoform c precursor [Homo sapiens]
          Length = 698

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 68  PTYLWIGPNEKTLTGNNRINITETGQLMVKDFLEPLSGLYTC 109
           P Y W       L  N RI I+E G L + +  +  +G YTC
Sbjct: 109 PVYTW-KKGRDILKENERITISEDGNLRIINVTKSDAGSYTC 149


>gi|28373122 contactin 4 isoform a precursor [Homo sapiens]
          Length = 1026

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 68  PTYLWIGPNEKTLTGNNRINITETGQLMVKDFLEPLSGLYTC 109
           P Y W       L  N RI I+E G L + +  +  +G YTC
Sbjct: 437 PVYTW-KKGRDILKENERITISEDGNLRIINVTKSDAGSYTC 477


>gi|23200041 tumor necrosis factor receptor superfamily, member 14
           precursor [Homo sapiens]
          Length = 283

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 6/60 (10%)

Query: 278 CRPGFGKNERLHSNCASCCVVCSPATFSPDVN-----VTCQTCVSVLTYGA-KSCPQTSN 331
           C PG+   E       + C  C P T+   +N     + CQ C   +   A ++C +T N
Sbjct: 57  CSPGYRVKEACGELTGTVCEPCPPGTYIAHLNGLSKCLQCQMCDPAMGLRASRNCSRTEN 116


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.137    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,384,877
Number of Sequences: 37866
Number of extensions: 601500
Number of successful extensions: 1693
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1653
Number of HSP's gapped (non-prelim): 46
length of query: 338
length of database: 18,247,518
effective HSP length: 103
effective length of query: 235
effective length of database: 14,347,320
effective search space: 3371620200
effective search space used: 3371620200
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.