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Search of human proteins with 40548378
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|40548378 syndecan 2 precursor [Homo sapiens]
(201 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|40548378 syndecan 2 precursor [Homo sapiens] 393 e-110
gi|38201675 syndecan 4 precursor [Homo sapiens] 108 3e-24
gi|187960059 syndecan 3 [Homo sapiens] 82 2e-16
gi|55749480 syndecan 1 precursor [Homo sapiens] 69 2e-12
gi|29568086 syndecan 1 precursor [Homo sapiens] 69 2e-12
gi|54792056 lung type-I cell membrane-associated glycoprotein is... 34 0.073
gi|156630992 OTU domain containing 4 protein isoform 3 [Homo sap... 34 0.096
gi|40807496 OTU domain containing 4 protein isoform 1 [Homo sapi... 34 0.096
gi|157427673 neurexin 3 isoform 3 precursor [Homo sapiens] 33 0.16
gi|41350305 neurexin 3 isoform 2 precursor [Homo sapiens] 33 0.16
gi|21070969 neurexin 3 isoform 1 precursor [Homo sapiens] 33 0.16
gi|8923771 ELG protein isoform b [Homo sapiens] 33 0.16
gi|166295179 ELG protein isoform a [Homo sapiens] 33 0.16
gi|83367077 mucin 16 [Homo sapiens] 32 0.36
gi|4758248 ephrin-B1 precursor [Homo sapiens] 32 0.47
gi|21237808 SWI/SNF-related matrix-associated actin-dependent re... 32 0.47
gi|21237805 SWI/SNF-related matrix-associated actin-dependent re... 32 0.47
gi|194363725 SWI/SNF-related matrix-associated actin-dependent r... 32 0.47
gi|208609951 neurexin 1 isoform alpha2 precursor [Homo sapiens] 31 0.62
gi|21070967 neurexin 1 isoform beta precursor [Homo sapiens] 31 0.62
gi|14149613 neurexin 1 isoform alpha1 precursor [Homo sapiens] 31 0.62
gi|12408649 X-ray repair cross complementing protein 4 isoform 1... 31 0.81
gi|4507945 X-ray repair cross complementing protein 4 isoform 1 ... 31 0.81
gi|222136684 prickle homolog 1 [Homo sapiens] 30 1.1
gi|222136682 prickle homolog 1 [Homo sapiens] 30 1.1
gi|222136680 prickle homolog 1 [Homo sapiens] 30 1.1
gi|222136678 prickle homolog 1 [Homo sapiens] 30 1.1
gi|54792060 lung type-I cell membrane-associated glycoprotein is... 30 1.1
gi|45238858 WD repeat domain 44 protein [Homo sapiens] 30 1.1
gi|46240864 sperm associated antigen 17 [Homo sapiens] 30 1.1
>gi|40548378 syndecan 2 precursor [Homo sapiens]
Length = 201
Score = 393 bits (1010), Expect = e-110
Identities = 201/201 (100%), Positives = 201/201 (100%)
Query: 1 MRRAWILLTLGLVACVSAESRAELTSDKDMYLDNSSIEEASGVYPIDDDDYASASGSGAD 60
MRRAWILLTLGLVACVSAESRAELTSDKDMYLDNSSIEEASGVYPIDDDDYASASGSGAD
Sbjct: 1 MRRAWILLTLGLVACVSAESRAELTSDKDMYLDNSSIEEASGVYPIDDDDYASASGSGAD 60
Query: 61 EDVESPELTTSRPLPKILLTSAAPKVETTTLNIQNKIPAQTKSPEETDKEKVHLSDSERK 120
EDVESPELTTSRPLPKILLTSAAPKVETTTLNIQNKIPAQTKSPEETDKEKVHLSDSERK
Sbjct: 61 EDVESPELTTSRPLPKILLTSAAPKVETTTLNIQNKIPAQTKSPEETDKEKVHLSDSERK 120
Query: 121 MDPAEEDTNVYTEKHSDSLFKRTEVLAAVIAGGVIGFLFAIFLILLLVYRMRKKDEGSYD 180
MDPAEEDTNVYTEKHSDSLFKRTEVLAAVIAGGVIGFLFAIFLILLLVYRMRKKDEGSYD
Sbjct: 121 MDPAEEDTNVYTEKHSDSLFKRTEVLAAVIAGGVIGFLFAIFLILLLVYRMRKKDEGSYD 180
Query: 181 LGERKPSSAAYQKAPTKEFYA 201
LGERKPSSAAYQKAPTKEFYA
Sbjct: 181 LGERKPSSAAYQKAPTKEFYA 201
>gi|38201675 syndecan 4 precursor [Homo sapiens]
Length = 198
Score = 108 bits (270), Expect = 3e-24
Identities = 71/170 (41%), Positives = 98/170 (57%), Gaps = 19/170 (11%)
Query: 41 SGVYPIDDDDYASASGSGADEDVESPELTTSRPLPKILLTSAAPKVETTTLNIQNKIPAQ 100
SG P D+D G G + D EL+ S L + + P+V + + N IP +
Sbjct: 39 SGALPDDED----VVGPGQESD--DFELSGSGDLDDLEDSMIGPEVVHPLVPLDNHIPER 92
Query: 101 TKSPEETDKEKVHLSDSE---RKMDPAEEDTNVYTEKHSDS------LFKRTEVLAAVIA 151
S + E L ++E +++ P EE +V + S +F+RTEVLAA+I
Sbjct: 93 AGSGSQVPTEPKKLEENEVIPKRISPVEESEDVSNKVSMSSTVQGSNIFERTEVLAALIV 152
Query: 152 GGVIGFLFAIFLILLLVYRMRKKDEGSYDLGERKPSSAAYQKAPTKEFYA 201
GG++G LFA+FLILLL+YRM+KKDEGSYDLG +KP Y+KAPT EFYA
Sbjct: 153 GGIVGILFAVFLILLLMYRMKKKDEGSYDLG-KKP---IYKKAPTNEFYA 198
>gi|187960059 syndecan 3 [Homo sapiens]
Length = 442
Score = 82.4 bits (202), Expect = 2e-16
Identities = 59/162 (36%), Positives = 83/162 (51%), Gaps = 13/162 (8%)
Query: 53 SASGSGADEDVESPE--LTTSRPLPKILLTSAA------PKVETTTLNIQNKIPAQTKSP 104
+A G +PE LTT R P++ ++ P+ ETT + N++ A +
Sbjct: 281 TAPGPTEVAQTPTPETFLTTIRDEPEVPVSGGPSGDFELPEEETTQPDTANEVVAVGGAA 340
Query: 105 EETDKEKVHLSDSERK----MDPAEEDTNVYTEKHSDSLFKRTEVLAAVIAGGVIGFLFA 160
+ L R +D A + + + S+ +R EVL AVI GGV+G LFA
Sbjct: 341 AKASSPPGTLPKGARPGPGLLDNAIDSGSSAAQLPQKSILERKEVLVAVIVGGVVGALFA 400
Query: 161 IFLILLLVYRMRKKDEGSYDLGERKPSSAAYQKA-PTKEFYA 201
FL+ LL+YRM+KKDEGSY L E K +S YQK +EFYA
Sbjct: 401 AFLVTLLIYRMKKKDEGSYTLEEPKQASVTYQKPDKQEEFYA 442
>gi|55749480 syndecan 1 precursor [Homo sapiens]
Length = 310
Score = 69.3 bits (168), Expect = 2e-12
Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 136 SDSLFKRTEVLAAVIAGGVIGFLFAIFLILLLVYRMRKKDEGSYDLGERKPSSAAYQKAP 195
S L R EVL VIAGG++G +FA+ L+ ++YRM+KKDEGSY L E K ++ + P
Sbjct: 243 SQGLLDRKEVLGGVIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQKP 302
Query: 196 TK--EFYA 201
TK EFYA
Sbjct: 303 TKQEEFYA 310
>gi|29568086 syndecan 1 precursor [Homo sapiens]
Length = 310
Score = 69.3 bits (168), Expect = 2e-12
Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 136 SDSLFKRTEVLAAVIAGGVIGFLFAIFLILLLVYRMRKKDEGSYDLGERKPSSAAYQKAP 195
S L R EVL VIAGG++G +FA+ L+ ++YRM+KKDEGSY L E K ++ + P
Sbjct: 243 SQGLLDRKEVLGGVIAGGLVGLIFAVCLVGFMLYRMKKKDEGSYSLEEPKQANGGAYQKP 302
Query: 196 TK--EFYA 201
TK EFYA
Sbjct: 303 TKQEEFYA 310
>gi|54792056 lung type-I cell membrane-associated glycoprotein
isoform a [Homo sapiens]
Length = 238
Score = 34.3 bits (77), Expect = 0.073
Identities = 40/152 (26%), Positives = 59/152 (38%), Gaps = 22/152 (14%)
Query: 38 EEASGVYPIDDDDYASASGS----GADEDVESPELTTSRPLPKILLTSAAPKVETTTLNI 93
E AS P DD + G GA++DV +P + R + A T + I
Sbjct: 97 EGASTGQPEDDTETTGLEGGVAMPGAEDDVVTPGTSEDRYKSGLTTLVATSVNSVTGIRI 156
Query: 94 QN------KIPAQTKSPEETDKEKVHLSDSERKMDPAEEDTNVYTEKHSDSLFKRTEVLA 147
++ + AQ +SP T V S S K+D DT EK S
Sbjct: 157 EDLPTSESTVHAQEQSPSAT-ASNVATSHSTEKVDG---DTQTTVEKDGLS--------T 204
Query: 148 AVIAGGVIGFLFAIFLILLLVYRMRKKDEGSY 179
+ G ++G L AI I ++ + +K G Y
Sbjct: 205 VTLVGIIVGVLLAIGFIGAIIVVVMRKMSGRY 236
>gi|156630992 OTU domain containing 4 protein isoform 3 [Homo
sapiens]
Length = 1049
Score = 33.9 bits (76), Expect = 0.096
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 23 ELTSDKDMYLDNSSIE---EASGVYPIDDDDYASASGSGADEDVESPELTTSRPLPKILL 79
E DKD +S ++ E S + I DD YA+ S + +E P +P + L
Sbjct: 445 EERKDKDSIHGHSQLDKRPEPSTLENITDDKYATVSSPSKSKKLECPSPAEQKPAEHVSL 504
Query: 80 TSAAPKVETTTLNIQNKIPA 99
++ AP + + +++ +P+
Sbjct: 505 SNPAPLLVSPEVHLTPAVPS 524
>gi|40807496 OTU domain containing 4 protein isoform 1 [Homo
sapiens]
Length = 1048
Score = 33.9 bits (76), Expect = 0.096
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 23 ELTSDKDMYLDNSSIE---EASGVYPIDDDDYASASGSGADEDVESPELTTSRPLPKILL 79
E DKD +S ++ E S + I DD YA+ S + +E P +P + L
Sbjct: 444 EERKDKDSIHGHSQLDKRPEPSTLENITDDKYATVSSPSKSKKLECPSPAEQKPAEHVSL 503
Query: 80 TSAAPKVETTTLNIQNKIPA 99
++ AP + + +++ +P+
Sbjct: 504 SNPAPLLVSPEVHLTPAVPS 523
>gi|157427673 neurexin 3 isoform 3 precursor [Homo sapiens]
Length = 459
Score = 33.1 bits (74), Expect = 0.16
Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 2/120 (1%)
Query: 66 PELTTSRPLPKILLTSAAPKVETTTLNIQNKIPAQTKSPEETDKEKVHLSDSERKMDPAE 125
PE++T+ + + + +T +IQ S E + ++ + +P E
Sbjct: 305 PEMSTTVMETTTTMATTTTRKNRSTASIQPTSDDLVSSAECSSDDEDFVECEPSTANPTE 364
Query: 126 EDTNVYTEKHSDSLFKRTEVLAAVIAGGVIGFLFAIFLILLLVYRMRKKDEGSYDLGERK 185
+ + + + + ++ G V I ++L +Y+ R +DEGSY + E +
Sbjct: 365 P--GIRRVPGASEVIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYQVDETR 422
>gi|41350305 neurexin 3 isoform 2 precursor [Homo sapiens]
Length = 432
Score = 33.1 bits (74), Expect = 0.16
Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 5/123 (4%)
Query: 66 PELTTSRPLPKILLTSAAPKVETTTLNIQNKIPAQTKSPE--ETDKEKVHLSDSE-RKMD 122
PE++T+ + + + +T +IQ S E D++ V S R +
Sbjct: 275 PEMSTTVMETTTTMATTTTRKNRSTASIQPTSDDLVSSAECSSDDEDFVECEPSTGRSAN 334
Query: 123 PAEEDTNVYTEKHSDSLFKRTEVLAAVIAGGVIGFLFAIFLILLLVYRMRKKDEGSYDLG 182
P E + + + + + ++ G V I ++L +Y+ R +DEGSY +
Sbjct: 335 PTEP--GIRRVPGASEVIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYQVD 392
Query: 183 ERK 185
E +
Sbjct: 393 ETR 395
>gi|21070969 neurexin 3 isoform 1 precursor [Homo sapiens]
Length = 1061
Score = 33.1 bits (74), Expect = 0.16
Identities = 22/120 (18%), Positives = 49/120 (40%), Gaps = 2/120 (1%)
Query: 66 PELTTSRPLPKILLTSAAPKVETTTLNIQNKIPAQTKSPEETDKEKVHLSDSERKMDPAE 125
PE++T+ + + + +T +IQ S E + ++ + +P E
Sbjct: 907 PEMSTTVMETTTTMATTTTRKNRSTASIQPTSDDLVSSAECSSDDEDFVECEPSTANPTE 966
Query: 126 EDTNVYTEKHSDSLFKRTEVLAAVIAGGVIGFLFAIFLILLLVYRMRKKDEGSYDLGERK 185
+ + + + + ++ G V I ++L +Y+ R +DEGSY + E +
Sbjct: 967 P--GIRRVPGASEVIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYQVDETR 1024
>gi|8923771 ELG protein isoform b [Homo sapiens]
Length = 340
Score = 33.1 bits (74), Expect = 0.16
Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 22/124 (17%)
Query: 19 ESRAELTSDKDMYLDNSSIEEASGVYPI-------DDDDYASASGSGADE---DVESPEL 68
E E D+DM D+ + E P +SAS S +DE D+E +
Sbjct: 72 EEEEEEEEDQDMDADDRVVVEYHEELPALKQPRERSASRRSSASSSDSDEMDYDLELKMI 131
Query: 69 TTSRPLPKILLTSAAPKVETTTLNIQNKIPAQT------------KSPEETDKEKVHLSD 116
+T P + +T A +VE+ NI+N + A + K P E + HL D
Sbjct: 132 STPSPKKSMKMTMYADEVESQLKNIRNSMRADSVSSSNIKNRIGNKLPPEKFADVRHLLD 191
Query: 117 SERK 120
+R+
Sbjct: 192 EKRQ 195
>gi|166295179 ELG protein isoform a [Homo sapiens]
Length = 620
Score = 33.1 bits (74), Expect = 0.16
Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 22/124 (17%)
Query: 19 ESRAELTSDKDMYLDNSSIEEASGVYPI-------DDDDYASASGSGADE---DVESPEL 68
E E D+DM D+ + E P +SAS S +DE D+E +
Sbjct: 352 EEEEEEEEDQDMDADDRVVVEYHEELPALKQPRERSASRRSSASSSDSDEMDYDLELKMI 411
Query: 69 TTSRPLPKILLTSAAPKVETTTLNIQNKIPAQT------------KSPEETDKEKVHLSD 116
+T P + +T A +VE+ NI+N + A + K P E + HL D
Sbjct: 412 STPSPKKSMKMTMYADEVESQLKNIRNSMRADSVSSSNIKNRIGNKLPPEKFADVRHLLD 471
Query: 117 SERK 120
+R+
Sbjct: 472 EKRQ 475
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 32.0 bits (71), Expect = 0.36
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 65 SPELTT---SRPLPKILLTSAAPKVETTTLNIQNKIPAQTKSPEETDKEKVHLSDSERKM 121
SP +T+ S LPK + T+ +P T ++ SPE T +LS + ++
Sbjct: 6808 SPAMTSPPVSSTLPKTIHTTPSPMTSLLTPSLVMTTDTLGTSPEPTTSSPPNLSSTSHEI 6867
Query: 122 DPAEEDTNVYTEKHSDSLFKRTEV 145
+EDT H + T V
Sbjct: 6868 LTTDEDTTAIEAMHPSTSTAATNV 6891
Score = 28.1 bits (61), Expect = 5.2
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 34 NSSIEEASGVYPIDDDDYASASGSGADEDVESPELTTSRPLPKILLTSAAPKVETTTLNI 93
+S + + +P ++ S S A SPE++T+ + S +P++ +T N
Sbjct: 3171 SSQAAQGNSTWPAPAEETGS---SPAGTSPGSPEMSTTLKIMSSKEPSISPEIRSTVRNS 3227
Query: 94 QNKIPAQTKSPEETDKEKVHLSDS 117
K P +T P ET E V L +
Sbjct: 3228 PWKTP-ETTVPMETTVEPVTLQST 3250
Score = 27.7 bits (60), Expect = 6.9
Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 13/115 (11%)
Query: 31 YLDNSSIEEASGVYPIDDDDYASASGSGADEDVESPELTTSRPLPKILLTSAAPKVETTT 90
++ +EE S + + S S + SPE S PLP +T+ V TT
Sbjct: 5619 WMTTPPVEETSSGFSLMSPSMTSPSPVSST----SPESIPSSPLP---VTALLTSVLVTT 5671
Query: 91 LNIQNKIPAQTKSPEETDKEKVHLSDSERKMDPAEEDTNVYTEKHSDSLFKRTEV 145
N+ T SPE +LS ++ +DT +TE S+ T V
Sbjct: 5672 TNVLG-----TTSPEPVTSSPPNLSSPTQERLTTYKDT-AHTEAMHASMHTNTAV 5720
>gi|4758248 ephrin-B1 precursor [Homo sapiens]
Length = 346
Score = 31.6 bits (70), Expect = 0.47
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 15/118 (12%)
Query: 58 GADEDVESPE-LTTSRPLPKILLTSAAPKVETTTLNIQNKIPAQTKSPEETDKEKVHLSD 116
G D + +PE LTTSRP K T+ + + P S ++D + ++
Sbjct: 165 GQDPNAVTPEQLTTSRP----------SKEADNTVKMATQAPGSRGSLGDSDGKHETVNQ 214
Query: 117 SERKMDPAEEDTNVYTEKHSDSLFKRTEVLAAVIAGGVIGFLFAIFLILLLVYRMRKK 174
E+ A ++ + +S + + AAV AG VI L IFL +LL+ ++RK+
Sbjct: 215 EEKSGPGASGGSSGDPDGFFNS---KVALFAAVGAGCVIFLLIIIFLTVLLL-KLRKR 268
>gi|21237808 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c2 isoform b [Homo sapiens]
Length = 1130
Score = 31.6 bits (70), Expect = 0.47
Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 8/112 (7%)
Query: 39 EASGVYPIDDDDYASASGSGADEDVESPELTTSRPLPKILLTSAAPKVETTTLNIQNKIP 98
E+SG+ D+ SG DE + T + PK I+ +
Sbjct: 767 ESSGIAGTTSDEPERIEESGNDEARVEGQATDEKKEPKEPREGGGA--------IEEEAK 818
Query: 99 AQTKSPEETDKEKVHLSDSERKMDPAEEDTNVYTEKHSDSLFKRTEVLAAVI 150
+T + D+EK DSE++ + ++ D V EK + + EVL V+
Sbjct: 819 EKTSEAPKKDEEKGKEGDSEKESEKSDGDPIVDPEKEKEPKEGQEEVLKEVV 870
>gi|21237805 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c2 isoform a [Homo sapiens]
Length = 1214
Score = 31.6 bits (70), Expect = 0.47
Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 8/112 (7%)
Query: 39 EASGVYPIDDDDYASASGSGADEDVESPELTTSRPLPKILLTSAAPKVETTTLNIQNKIP 98
E+SG+ D+ SG DE + T + PK I+ +
Sbjct: 736 ESSGIAGTTSDEPERIEESGNDEARVEGQATDEKKEPKEPREGGGA--------IEEEAK 787
Query: 99 AQTKSPEETDKEKVHLSDSERKMDPAEEDTNVYTEKHSDSLFKRTEVLAAVI 150
+T + D+EK DSE++ + ++ D V EK + + EVL V+
Sbjct: 788 EKTSEAPKKDEEKGKEGDSEKESEKSDGDPIVDPEKEKEPKEGQEEVLKEVV 839
>gi|194363725 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c2 isoform c [Homo sapiens]
Length = 1152
Score = 31.6 bits (70), Expect = 0.47
Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 8/112 (7%)
Query: 39 EASGVYPIDDDDYASASGSGADEDVESPELTTSRPLPKILLTSAAPKVETTTLNIQNKIP 98
E+SG+ D+ SG DE + T + PK I+ +
Sbjct: 767 ESSGIAGTTSDEPERIEESGNDEARVEGQATDEKKEPKEPREGGGA--------IEEEAK 818
Query: 99 AQTKSPEETDKEKVHLSDSERKMDPAEEDTNVYTEKHSDSLFKRTEVLAAVI 150
+T + D+EK DSE++ + ++ D V EK + + EVL V+
Sbjct: 819 EKTSEAPKKDEEKGKEGDSEKESEKSDGDPIVDPEKEKEPKEGQEEVLKEVV 870
>gi|208609951 neurexin 1 isoform alpha2 precursor [Homo sapiens]
Length = 1547
Score = 31.2 bits (69), Expect = 0.62
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 136 SDSLFKRTEVLAAVIAGGVIGFLFAIFLILLLVYRMRKKDEGSYDLGERK---PSSAAYQ 192
S + + + ++ G V I ++L +Y+ R +DEGSY + E + +SA
Sbjct: 1460 SAEVIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYHVDESRNYISNSAQSN 1519
Query: 193 KAPTKE 198
A KE
Sbjct: 1520 GAVVKE 1525
>gi|21070967 neurexin 1 isoform beta precursor [Homo sapiens]
Length = 442
Score = 31.2 bits (69), Expect = 0.62
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 136 SDSLFKRTEVLAAVIAGGVIGFLFAIFLILLLVYRMRKKDEGSYDLGERK---PSSAAYQ 192
S + + + ++ G V I ++L +Y+ R +DEGSY + E + +SA
Sbjct: 355 SAEVIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYHVDESRNYISNSAQSN 414
Query: 193 KAPTKE 198
A KE
Sbjct: 415 GAVVKE 420
>gi|14149613 neurexin 1 isoform alpha1 precursor [Homo sapiens]
Length = 1477
Score = 31.2 bits (69), Expect = 0.62
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 136 SDSLFKRTEVLAAVIAGGVIGFLFAIFLILLLVYRMRKKDEGSYDLGERK---PSSAAYQ 192
S + + + ++ G V I ++L +Y+ R +DEGSY + E + +SA
Sbjct: 1390 SAEVIRESSSTTGMVVGIVAAAALCILILLYAMYKYRNRDEGSYHVDESRNYISNSAQSN 1449
Query: 193 KAPTKE 198
A KE
Sbjct: 1450 GAVVKE 1455
>gi|12408649 X-ray repair cross complementing protein 4 isoform 1
[Homo sapiens]
Length = 334
Score = 30.8 bits (68), Expect = 0.81
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 22 AELTSDKDMYLDNSSIEEASGVYPIDDDDYASASGSGADEDVESPELTTSRPLPKILLTS 81
+E+T+D+D D S+ EE+ D ASA+ S D + S ++T P K
Sbjct: 219 SEMTADRDPVYDESTDEESEN--QTDLSGLASAAVSKDDSIISSLDVTDIAPSRK----- 271
Query: 82 AAPKVETTTLNIQNKIPAQTKSPEETDKEKVHLSDSERKMDPAEEDTNVYTEKHS 136
+ L + K+ Q +E +K L ++ +K + E+ ++ T ++S
Sbjct: 272 -RRQRMQRNLGTEPKMAPQENQLQEKEKPDSSLPETSKKEHISAENMSLETLRNS 325
>gi|4507945 X-ray repair cross complementing protein 4 isoform 1
[Homo sapiens]
Length = 334
Score = 30.8 bits (68), Expect = 0.81
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 8/115 (6%)
Query: 22 AELTSDKDMYLDNSSIEEASGVYPIDDDDYASASGSGADEDVESPELTTSRPLPKILLTS 81
+E+T+D+D D S+ EE+ D ASA+ S D + S ++T P K
Sbjct: 219 SEMTADRDPVYDESTDEESEN--QTDLSGLASAAVSKDDSIISSLDVTDIAPSRK----- 271
Query: 82 AAPKVETTTLNIQNKIPAQTKSPEETDKEKVHLSDSERKMDPAEEDTNVYTEKHS 136
+ L + K+ Q +E +K L ++ +K + E+ ++ T ++S
Sbjct: 272 -RRQRMQRNLGTEPKMAPQENQLQEKEKPDSSLPETSKKEHISAENMSLETLRNS 325
>gi|222136684 prickle homolog 1 [Homo sapiens]
Length = 831
Score = 30.4 bits (67), Expect = 1.1
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 29 DMYLDNSSIEEASGVYPIDDDDYASASGSGADEDVESPELTTSRPLPK 76
D L N + G+Y DDD + S+S S +D + E L P P+
Sbjct: 740 DYGLQNPGMNRFLGLYGEDDDSWCSSSSSSSDSEEEGYFLGQPIPQPR 787
>gi|222136682 prickle homolog 1 [Homo sapiens]
Length = 831
Score = 30.4 bits (67), Expect = 1.1
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 29 DMYLDNSSIEEASGVYPIDDDDYASASGSGADEDVESPELTTSRPLPK 76
D L N + G+Y DDD + S+S S +D + E L P P+
Sbjct: 740 DYGLQNPGMNRFLGLYGEDDDSWCSSSSSSSDSEEEGYFLGQPIPQPR 787
>gi|222136680 prickle homolog 1 [Homo sapiens]
Length = 831
Score = 30.4 bits (67), Expect = 1.1
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 29 DMYLDNSSIEEASGVYPIDDDDYASASGSGADEDVESPELTTSRPLPK 76
D L N + G+Y DDD + S+S S +D + E L P P+
Sbjct: 740 DYGLQNPGMNRFLGLYGEDDDSWCSSSSSSSDSEEEGYFLGQPIPQPR 787
>gi|222136678 prickle homolog 1 [Homo sapiens]
Length = 831
Score = 30.4 bits (67), Expect = 1.1
Identities = 16/48 (33%), Positives = 23/48 (47%)
Query: 29 DMYLDNSSIEEASGVYPIDDDDYASASGSGADEDVESPELTTSRPLPK 76
D L N + G+Y DDD + S+S S +D + E L P P+
Sbjct: 740 DYGLQNPGMNRFLGLYGEDDDSWCSSSSSSSDSEEEGYFLGQPIPQPR 787
>gi|54792060 lung type-I cell membrane-associated glycoprotein
isoform c [Homo sapiens]
Length = 120
Score = 30.4 bits (67), Expect = 1.1
Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 18/128 (14%)
Query: 58 GADEDVESPELTTSRPLPKILLTSAAPKVETTTLNIQN------KIPAQTKSPEETDKEK 111
GA++DV +P + R + A T + I++ + AQ +SP T
Sbjct: 3 GAEDDVVTPGTSEDRYKSGLTTLVATSVNSVTGIRIEDLPTSESTVHAQEQSPSAT-ASN 61
Query: 112 VHLSDSERKMDPAEEDTNVYTEKHSDSLFKRTEVLAAVIAGGVIGFLFAIFLILLLVYRM 171
V S S K+D DT EK S + G ++G L AI I ++ +
Sbjct: 62 VATSHSTEKVDG---DTQTTVEKDGLS--------TVTLVGIIVGVLLAIGFIGAIIVVV 110
Query: 172 RKKDEGSY 179
+K G Y
Sbjct: 111 MRKMSGRY 118
>gi|45238858 WD repeat domain 44 protein [Homo sapiens]
Length = 913
Score = 30.4 bits (67), Expect = 1.1
Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 12/138 (8%)
Query: 23 ELTSDKDMYLDNSSIEEASGVYPIDDDDYASASGSGADEDVESPEL--TTSRPLPKILLT 80
EL D + S IEE+ V ++DD S +D+ SP + T +P +L
Sbjct: 54 ELKQDVSKKIIESIIEESQKVLQLEDDSLDSKGKELSDQATASPIVARTDLSNIPGLLAI 113
Query: 81 SAAPKVETTTLNIQNKIPAQTKSPEETDKEKVHLSDS--ERKMDPAEEDTNVYTEKHSDS 138
E+ QN T E + +K SD E+ +D + T + + +
Sbjct: 114 DQVLPEESQKAESQN-----TFEETELELKKCFPSDETCEKPVDETTKLTQTSSTEQLNV 168
Query: 139 LFKRTEVL---AAVIAGG 153
L TEVL A + GG
Sbjct: 169 LETETEVLNKEAVEVKGG 186
>gi|46240864 sperm associated antigen 17 [Homo sapiens]
Length = 2223
Score = 30.4 bits (67), Expect = 1.1
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 55 SGSGADEDVESPELTTSRPLPKILLTSAAPKVETTTLN-IQNKIPAQTKSPEETDKEKVH 113
S A ED + P+L T +P L + P + T + + KI + K P+E+ KE+ H
Sbjct: 1139 SNGMAPED-KDPDLETILNIPSALTPTVVPVIVTVPQSKAKGKIKGKEK-PKESLKEEEH 1196
Query: 114 LSDSERKMDPAEED 127
+ E+K + E +
Sbjct: 1197 PKEEEKKEEEVEPE 1210
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.128 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,372,695
Number of Sequences: 37866
Number of extensions: 324427
Number of successful extensions: 1480
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 1386
Number of HSP's gapped (non-prelim): 145
length of query: 201
length of database: 18,247,518
effective HSP length: 97
effective length of query: 104
effective length of database: 14,574,516
effective search space: 1515749664
effective search space used: 1515749664
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.