Guide to the Human Genome
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Name: XRCC4 Sequence: fasta or formatted (334aa) NCBI GI: 12408649
Description:

X-ray repair cross complementing protein 4 isoform 1

Referenced in:

DNases, Recombination, and DNA Repair

Other entries for this name:
alt prot [336aa] X-ray repair cross complementing protein 4 isoform 2
alt mRNA [334aa] X-ray repair cross complementing protein 4 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         21           2
 C cysteine            1.5          5           1
 D aspartate           6.6         22           2
 E glutamate          12.6         42           2
 F phenylalanine       3.6         12           3
 G glycine             3.6         12           1
 H histidine           1.8          6           1
 I isoleucine          5.1         17           2
 K lysine              8.1         27           2
 L leucine             9.3         31           2
 M methionine          2.1          7           1
 N asparagine          4.8         16           1
 P proline             3.0         10           1
 Q glutamine           3.9         13           1
 R arginine            5.4         18           2
 S serine              9.9         33           2
 T threonine           5.4         18           1
 V valine              4.5         15           1
 W tryptophan          0.9          3           1
 Y tyrosine            1.8          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   X-ray repair cross complementing protein 4 isoform 1... 
XRCC4                 1.000   X-ray repair cross complementing protein 4 isoform 1 ...
XRCC4                 0.991   X-ray repair cross complementing protein 4 isoform 2...
CENPE                 0.028   centromere protein E 
EHMT2                 0.025   euchromatic histone-lysine N-methyltransferase 2 is...
RNF34                 0.020   ring finger protein 34 isoform 1 
RNF34                 0.020   ring finger protein 34 isoform 2 
EHMT2                 0.020   euchromatic histone-lysine N-methyltransferase 2 is...
PHLDB2                0.020   pleckstrin homology-like domain, family B, member 2...
PHLDB2                0.020   pleckstrin homology-like domain, family B, member 2...
PHLDB2                0.020   pleckstrin homology-like domain, family B, member 2...
PHLDB2                0.020   pleckstrin homology-like domain, family B, member 2 ...
TAF1L                 0.019   TBP-associated factor RNA polymerase 1-like 
KTN1                  0.019   kinectin 1 isoform b 
KTN1                  0.019   kinectin 1 isoform a 
KTN1                  0.019   kinectin 1 isoform c 
KTN1                  0.019   kinectin 1 isoform a 
IFT74                 0.019   coiled-coil domain containing 2 isoform b 
IFT74                 0.019   coiled-coil domain containing 2 isoform a 
IFT74                 0.019   coiled-coil domain containing 2 isoform a 
IFT74                 0.019   coiled-coil domain containing 2 isoform a 
CLIP1                 0.019   restin isoform b 
CLIP1                 0.019   restin isoform a 
KIF20B                0.019   M-phase phosphoprotein 1 
FSIP1                 0.019   fibrous sheath interacting protein 1 
ANKRD20A5             0.017   PREDICTED: ankyrin repeat domain 20 family, member ...
ANKRD20A5             0.017   PREDICTED: ankyrin repeat domain 20 family, member ...
MYH3                  0.017   myosin, heavy chain 3, skeletal muscle, embryonic [H...
TCHH                  0.017   trichohyalin 
LOC727832             0.016   golgi autoantigen, golgin subfamily a-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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