Guide to the Human Genome
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Name: CCDC137 Sequence: fasta or formatted (289aa) NCBI GI: 40548332
Description:

coiled-coil domain containing 137

Referenced in:

Coiled-Coil Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         26           2
 C cysteine            0.3          1           1
 D aspartate           2.4          7           1
 E glutamate           9.0         26           3
 F phenylalanine       2.1          6           1
 G glycine             5.5         16           2
 H histidine           1.4          4           1
 I isoleucine          2.4          7           1
 K lysine             12.1         35           3
 L leucine             7.3         21           2
 M methionine          2.1          6           1
 N asparagine          1.7          5           1
 P proline             7.6         22           2
 Q glutamine          10.7         31           3
 R arginine           12.5         36           2
 S serine              5.2         15           1
 T threonine           2.1          6           1
 V valine              5.5         16           2
 W tryptophan          0.3          1           1
 Y tyrosine            0.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coiled-coil domain containing 137 
TCHH                  0.055   trichohyalin 
GIGYF2                0.053   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.053   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.053   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.053   GRB10 interacting GYF protein 2 isoform b 
INCENP                0.053   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.053   inner centromere protein antigens 135/155kDa isofor...
ARGLU1                0.048   arginine and glutamate rich 1 
LOC100133599          0.041   PREDICTED: hypothetical protein 
TRDN                  0.037   triadin 
LOC100286959          0.035   PREDICTED: hypothetical protein XP_002343921 
CALD1                 0.035   caldesmon 1 isoform 1 
TAF3                  0.033   RNA polymerase II transcription factor TAFII140 [Ho...
CEP250                0.031   centrosomal protein 2 
LOC100133599          0.031   PREDICTED: hypothetical protein 
LOC283685             0.029   PREDICTED: golgi autoantigen, golgin subfamily a-li...
MSN                   0.029   moesin 
C2orf77               0.029   hypothetical protein LOC129881 
DNAJC2                0.029   DnaJ (Hsp40) homolog, subfamily C, member 2 isoform...
BAT2D1                0.029   HBxAg transactivated protein 2 
LOC645202             0.028   PREDICTED: hypothetical protein LOC645202 
SFRS12                0.028   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.028   splicing factor, arginine/serine-rich 12 isoform b [...
MAP7D2                0.028   MAP7 domain containing 2 
DEF6                  0.028   differentially expressed in FDCP 6 homolog 
EIF5B                 0.028   eukaryotic translation initiation factor 5B 
RBM25                 0.028   RNA binding motif protein 25 
MAP4K4                0.028   mitogen-activated protein kinase kinase kinase kinas...
LOC283767             0.026   golgi autoantigen, golgin subfamily a-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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