Guide to the Human Genome
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Name: CLUL1 Sequence: fasta or formatted (466aa) NCBI GI: 40316926
Description:

clusterin-like 1 (retinal)

Referenced in:

Crystallins and Other Eye Proteins
Lipoproteins

Other entries for this name:
alt mRNA [466aa] clusterin-like 1 (retinal)
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.3         20           1
 C cysteine            3.2         15           1
 D aspartate           5.6         26           1
 E glutamate          10.7         50           4
 F phenylalanine       6.2         29           2
 G glycine             2.8         13           2
 H histidine           2.8         13           1
 I isoleucine          5.6         26           2
 K lysine              7.9         37           2
 L leucine             9.7         45           2
 M methionine          3.2         15           2
 N asparagine          4.3         20           2
 P proline             4.1         19           2
 Q glutamine           6.2         29           2
 R arginine            3.4         16           1
 S serine              7.5         35           2
 T threonine           4.9         23           2
 V valine              4.5         21           2
 W tryptophan          1.5          7           1
 Y tyrosine            1.5          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   clusterin-like 1 (retinal) 
CLUL1                 1.000   clusterin-like 1 (retinal) 
CLU                   0.141   clusterin isoform 2 
CLU                   0.141   clusterin isoform 1 
MYH13                 0.016   myosin, heavy polypeptide 13, skeletal muscle [Homo...
ANKRD30B              0.016   ankyrin repeat domain 30B 
UTRN                  0.015   utrophin 
GOLGA4                0.014   golgi autoantigen, golgin subfamily a, 4 
MYH3                  0.013   myosin, heavy chain 3, skeletal muscle, embryonic [H...
CCDC88A               0.013   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.013   coiled-coil domain containing 88A isoform 1 
KIF16B                0.013   kinesin-like motor protein C20orf23 
LOC400352             0.012   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.012   PREDICTED: similar to Putative golgin subfamily A m...
CIT                   0.012   citron 
GCC2                  0.012   GRIP and coiled-coil domain-containing 2 
DSP                   0.012   desmoplakin isoform II 
DSP                   0.012   desmoplakin isoform I 
DAAM1                 0.012   dishevelled-associated activator of morphogenesis 1 ...
CCDC68                0.011   coiled-coil domain containing 68 
CCDC68                0.011   coiled-coil domain containing 68 
FILIP1                0.011   filamin A interacting protein 1 
SMC3                  0.011   structural maintenance of chromosomes 3 
AMPH                  0.011   amphiphysin isoform 2 
AMPH                  0.011   amphiphysin isoform 1 
CENPF                 0.011   centromere protein F 
CEP290                0.010   centrosomal protein 290kDa 
LOC283685             0.010   PREDICTED: golgi autoantigen, golgin subfamily a-li...
UIMC1                 0.010   ubiquitin interaction motif containing 1 
NOL12                 0.010   nucleolar protein 12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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