Guide to the Human Genome
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Name: RASGEF1C Sequence: fasta or formatted (466aa) NCBI GI: 40255197
Description:

RasGEF domain family, member 1C

Referenced in:

Ras

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         37           2
 C cysteine            2.4         11           1
 D aspartate           3.9         18           1
 E glutamate           7.7         36           2
 F phenylalanine       5.4         25           2
 G glycine             4.5         21           1
 H histidine           2.8         13           1
 I isoleucine          5.2         24           2
 K lysine              6.2         29           3
 L leucine            11.2         52           2
 M methionine          1.7          8           1
 N asparagine          3.0         14           1
 P proline             6.7         31           3
 Q glutamine           4.9         23           3
 R arginine            5.6         26           1
 S serine              6.7         31           2
 T threonine           5.6         26           1
 V valine              4.7         22           2
 W tryptophan          1.1          5           1
 Y tyrosine            3.0         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RasGEF domain family, member 1C 
RASGEF1B              0.653   RasGEF domain family, member 1B 
RASGEF1A              0.506   RasGEF domain family, member 1A 
RAPGEF2               0.083   Rap guanine nucleotide exchange factor 2 
RAPGEF6               0.075   PDZ domain-containing guanine nucleotide exchange fa...
RAPGEF4               0.072   Rap guanine nucleotide exchange factor (GEF) 4 isof...
RAPGEF4               0.072   Rap guanine nucleotide exchange factor (GEF) 4 isof...
RASGRF1               0.072   Ras protein-specific guanine nucleotide-releasing f...
RASGRF1               0.072   Ras protein-specific guanine nucleotide-releasing fa...
RASGRF1               0.072   Ras protein-specific guanine nucleotide-releasing fa...
RAPGEF3               0.067   Rap guanine nucleotide exchange factor 3 isoform b ...
RAPGEF3               0.067   Rap guanine nucleotide exchange factor 3 isoform b [...
RAPGEF3               0.067   Rap guanine nucleotide exchange factor 3 isoform a ...
RASGRF2               0.067   Ras protein-specific guanine nucleotide-releasing fa...
RASGRP1               0.063   RAS guanyl releasing protein 1 isoform b 
RASGRP1               0.063   RAS guanyl releasing protein 1 isoform a 
RAPGEF5               0.061   Rap guanine nucleotide exchange factor (GEF) 5 [Hom...
RGL2                  0.061   ral guanine nucleotide dissociation stimulator-like 2...
SOS1                  0.060   son of sevenless homolog 1 
RAPGEFL1              0.060   Rap guanine nucleotide exchange factor (GEF)-like 1 [...
RGL1                  0.058   ral guanine nucleotide dissociation stimulator-like ...
RASGRP3               0.055   RAS guanyl releasing protein 3 (calcium and DAG-regul...
RASGRP4               0.055   RAS guanyl releasing protein 4 isoform a 
RASGRP4               0.055   RAS guanyl releasing protein 4 isoform b 
RASGRP3               0.055   RAS guanyl releasing protein 3 (calcium and DAG-reg...
RASGRP3               0.055   RAS guanyl releasing protein 3 (calcium and DAG-regu...
RALGPS1               0.052   Ral GEF with PH domain and SH3 binding motif 1 
SOS2                  0.051   son of sevenless homolog 2 
RAPGEF1               0.051   guanine nucleotide-releasing factor 2 isoform b [Hom...
RAPGEF1               0.051   guanine nucleotide-releasing factor 2 isoform a [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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