Guide to the Human Genome
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Name: RALGPS1 Sequence: fasta or formatted (557aa) NCBI GI: 7662070
Description:

Ral GEF with PH domain and SH3 binding motif 1

Referenced in:

Ras

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         33           2
 C cysteine            1.4          8           1
 D aspartate           4.5         25           2
 E glutamate           5.6         31           2
 F phenylalanine       3.1         17           1
 G glycine             4.8         27           1
 H histidine           2.3         13           1
 I isoleucine          4.3         24           2
 K lysine              6.8         38           2
 L leucine            11.0         61           2
 M methionine          2.5         14           2
 N asparagine          3.8         21           2
 P proline             5.9         33           2
 Q glutamine           3.1         17           1
 R arginine            5.7         32           2
 S serine             13.5         75           4
 T threonine           5.0         28           2
 V valine              6.1         34           2
 W tryptophan          1.3          7           1
 Y tyrosine            3.4         19           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Ral GEF with PH domain and SH3 binding motif 1 
RALGPS2               0.614   Ral GEF with PH domain and SH3 binding motif 2 [Homo...
RGL3                  0.092   ral guanine nucleotide dissociation stimulator-like...
RGL3                  0.092   ral guanine nucleotide dissociation stimulator-like...
RASGRF2               0.090   Ras protein-specific guanine nucleotide-releasing fa...
RASGRF1               0.090   Ras protein-specific guanine nucleotide-releasing f...
RASGRF1               0.090   Ras protein-specific guanine nucleotide-releasing fa...
RASGRF1               0.090   Ras protein-specific guanine nucleotide-releasing fa...
RALGDS                0.087   ral guanine nucleotide dissociation stimulator isofo...
RALGDS                0.087   ral guanine nucleotide dissociation stimulator isof...
SOS1                  0.081   son of sevenless homolog 1 
RGL1                  0.078   ral guanine nucleotide dissociation stimulator-like ...
RGL2                  0.071   ral guanine nucleotide dissociation stimulator-like 2...
SOS2                  0.070   son of sevenless homolog 2 
RGL4                  0.070   ral guanine nucleotide dissociation stimulator-like ...
RAPGEF1               0.067   guanine nucleotide-releasing factor 2 isoform b [Hom...
RAPGEF1               0.067   guanine nucleotide-releasing factor 2 isoform a [Hom...
RAPGEF4               0.057   Rap guanine nucleotide exchange factor (GEF) 4 isof...
RAPGEF4               0.057   Rap guanine nucleotide exchange factor (GEF) 4 isof...
RAPGEF5               0.057   Rap guanine nucleotide exchange factor (GEF) 5 [Hom...
RASGRP3               0.057   RAS guanyl releasing protein 3 (calcium and DAG-reg...
RASGRP3               0.057   RAS guanyl releasing protein 3 (calcium and DAG-regu...
RASGRP3               0.057   RAS guanyl releasing protein 3 (calcium and DAG-regul...
RAPGEF2               0.056   Rap guanine nucleotide exchange factor 2 
RAPGEFL1              0.054   Rap guanine nucleotide exchange factor (GEF)-like 1 [...
RASGRP2               0.053   RAS guanyl releasing protein 2 
RASGRP2               0.053   RAS guanyl releasing protein 2 
RASGRP2               0.053   RAS guanyl releasing protein 2 
RAPGEF3               0.049   Rap guanine nucleotide exchange factor 3 isoform b ...
RAPGEF3               0.049   Rap guanine nucleotide exchange factor 3 isoform b [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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