Guide to the Human Genome
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Name: RAPGEFL1 Sequence: fasta or formatted (456aa) NCBI GI: 7705939
Description:

Rap guanine nucleotide exchange factor (GEF)-like 1

Referenced in:

Ras

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         25           2
 C cysteine            2.4         11           1
 D aspartate           4.6         21           1
 E glutamate           9.2         42           3
 F phenylalanine       4.4         20           1
 G glycine             4.4         20           1
 H histidine           3.5         16           1
 I isoleucine          4.4         20           2
 K lysine              5.9         27           2
 L leucine            13.8         63           3
 M methionine          1.5          7           1
 N asparagine          3.1         14           1
 P proline             4.6         21           2
 Q glutamine           4.6         21           1
 R arginine            6.6         30           2
 S serine              6.1         28           3
 T threonine           4.4         20           1
 V valine              7.5         34           2
 W tryptophan          0.7          3           1
 Y tyrosine            2.9         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Rap guanine nucleotide exchange factor (GEF)-like 1 [... 
RAPGEF4               0.405   Rap guanine nucleotide exchange factor (GEF) 4 isof...
RAPGEF4               0.405   Rap guanine nucleotide exchange factor (GEF) 4 isof...
RAPGEF5               0.366   Rap guanine nucleotide exchange factor (GEF) 5 [Hom...
RAPGEF3               0.267   Rap guanine nucleotide exchange factor 3 isoform b ...
RAPGEF3               0.267   Rap guanine nucleotide exchange factor 3 isoform b [...
RAPGEF3               0.267   Rap guanine nucleotide exchange factor 3 isoform a ...
RAPGEF2               0.151   Rap guanine nucleotide exchange factor 2 
RAPGEF6               0.135   PDZ domain-containing guanine nucleotide exchange fa...
RAPGEF1               0.076   guanine nucleotide-releasing factor 2 isoform b [Hom...
RAPGEF1               0.076   guanine nucleotide-releasing factor 2 isoform a [Hom...
RASGRF2               0.075   Ras protein-specific guanine nucleotide-releasing fa...
RASGRP1               0.073   RAS guanyl releasing protein 1 isoform b 
RASGRP1               0.073   RAS guanyl releasing protein 1 isoform a 
RASGRF1               0.070   Ras protein-specific guanine nucleotide-releasing f...
RASGRF1               0.070   Ras protein-specific guanine nucleotide-releasing fa...
RASGRF1               0.070   Ras protein-specific guanine nucleotide-releasing fa...
RALGPS2               0.066   Ral GEF with PH domain and SH3 binding motif 2 [Homo...
RALGPS1               0.066   Ral GEF with PH domain and SH3 binding motif 1 
SOS1                  0.062   son of sevenless homolog 1 
RASGEF1B              0.062   RasGEF domain family, member 1B 
RASGEF1C              0.062   RasGEF domain family, member 1C 
RASGRP3               0.056   RAS guanyl releasing protein 3 (calcium and DAG-reg...
RASGRP3               0.056   RAS guanyl releasing protein 3 (calcium and DAG-regu...
RASGRP3               0.056   RAS guanyl releasing protein 3 (calcium and DAG-regul...
SOS2                  0.054   son of sevenless homolog 2 
RASGRP4               0.051   RAS guanyl releasing protein 4 isoform a 
RASGRP4               0.051   RAS guanyl releasing protein 4 isoform b 
RGL3                  0.048   ral guanine nucleotide dissociation stimulator-like...
RGL3                  0.048   ral guanine nucleotide dissociation stimulator-like...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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