Guide to the Human Genome
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Name: RASGEF1A Sequence: fasta or formatted (481aa) NCBI GI: 117168263
Description:

RasGEF domain family, member 1A

Referenced in:

Ras

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         31           2
 C cysteine            2.3         11           2
 D aspartate           4.8         23           1
 E glutamate           6.7         32           2
 F phenylalanine       5.0         24           2
 G glycine             5.0         24           3
 H histidine           3.3         16           2
 I isoleucine          5.4         26           2
 K lysine              7.1         34           3
 L leucine            10.0         48           3
 M methionine          3.5         17           2
 N asparagine          3.5         17           1
 P proline             4.8         23           2
 Q glutamine           5.2         25           2
 R arginine            4.6         22           1
 S serine              7.5         36           2
 T threonine           5.4         26           2
 V valine              6.0         29           2
 W tryptophan          1.2          6           1
 Y tyrosine            2.3         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RasGEF domain family, member 1A 
RASGEF1B              0.574   RasGEF domain family, member 1B 
RASGEF1C              0.491   RasGEF domain family, member 1C 
RGL2                  0.076   ral guanine nucleotide dissociation stimulator-like 2...
RAPGEF2               0.075   Rap guanine nucleotide exchange factor 2 
RAPGEF6               0.073   PDZ domain-containing guanine nucleotide exchange fa...
RASGRF1               0.062   Ras protein-specific guanine nucleotide-releasing f...
RASGRF1               0.062   Ras protein-specific guanine nucleotide-releasing fa...
RASGRF1               0.062   Ras protein-specific guanine nucleotide-releasing fa...
RGL1                  0.059   ral guanine nucleotide dissociation stimulator-like ...
RASGRF2               0.057   Ras protein-specific guanine nucleotide-releasing fa...
RASGRP3               0.052   RAS guanyl releasing protein 3 (calcium and DAG-reg...
RASGRP3               0.052   RAS guanyl releasing protein 3 (calcium and DAG-regu...
RASGRP3               0.052   RAS guanyl releasing protein 3 (calcium and DAG-regul...
RAPGEF4               0.048   Rap guanine nucleotide exchange factor (GEF) 4 isof...
RAPGEF4               0.048   Rap guanine nucleotide exchange factor (GEF) 4 isof...
RASGRP1               0.048   RAS guanyl releasing protein 1 isoform b 
RASGRP1               0.048   RAS guanyl releasing protein 1 isoform a 
RAPGEF3               0.047   Rap guanine nucleotide exchange factor 3 isoform b ...
RAPGEF3               0.047   Rap guanine nucleotide exchange factor 3 isoform b [...
RAPGEF3               0.047   Rap guanine nucleotide exchange factor 3 isoform a ...
RASGRP2               0.047   RAS guanyl releasing protein 2 
RASGRP2               0.047   RAS guanyl releasing protein 2 
RASGRP2               0.047   RAS guanyl releasing protein 2 
RASGRP4               0.046   RAS guanyl releasing protein 4 isoform a 
RAPGEF5               0.046   Rap guanine nucleotide exchange factor (GEF) 5 [Hom...
RGL3                  0.045   ral guanine nucleotide dissociation stimulator-like...
RGL3                  0.045   ral guanine nucleotide dissociation stimulator-like...
RASGRP4               0.044   RAS guanyl releasing protein 4 isoform b 
RAPGEF1               0.043   guanine nucleotide-releasing factor 2 isoform b [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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