Guide to the Human Genome
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Search of human proteins with 39930473

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|39930473 ligand dependent nuclear receptor corepressor [Homo
sapiens]
         (433 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|39930473 ligand dependent nuclear receptor corepressor [Homo ...   858   0.0  
gi|33667089 ligand dependent nuclear receptor corepressor-like [...    55   9e-08
gi|239743293 PREDICTED: mucin 12 [Homo sapiens]                        39   0.009
gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo ...    39   0.009
gi|239758148 PREDICTED: similar to mucin 11 [Homo sapiens]             38   0.016
gi|239752490 PREDICTED: similar to Mucin-12 [Homo sapiens]             38   0.016
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot...    37   0.027
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot...    37   0.027
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi...    37   0.027
gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap...    37   0.027
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot...    37   0.035
gi|169166499 PREDICTED: similar to ribonucleic acid binding prot...    37   0.035
gi|113415498 PREDICTED: similar to ribonucleic acid binding prot...    37   0.035
gi|88973230 PREDICTED: similar to ribonucleic acid binding prote...    37   0.035
gi|154816198 transcription elongation factor B polypeptide 3C-li...    36   0.078
gi|156938279 transcription elongation factor B polypeptide 3C [H...    36   0.078
gi|91982772 mucin 17 [Homo sapiens]                                    35   0.10 
gi|161019170 mucin 5AC [Homo sapiens]                                  35   0.17 
gi|195972805 myocyte enhancer factor 2A isoform 4 [Homo sapiens]       35   0.17 
gi|195972803 myocyte enhancer factor 2A isoform 3 [Homo sapiens]       35   0.17 
gi|195972801 myocyte enhancer factor 2A isoform 2 [Homo sapiens]       35   0.17 
gi|195972799 myocyte enhancer factor 2A isoform 1 [Homo sapiens]       35   0.17 
gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]       35   0.17 
gi|28559039 mediator complex subunit 1 [Homo sapiens]                  35   0.17 
gi|16507200 ubiquitin specific protease 28 [Homo sapiens]              35   0.17 
gi|171460948 TSC22 domain family, member 1 isoform 1 [Homo sapiens]    35   0.17 
gi|7662184 zinc finger homeobox 1b [Homo sapiens]                      34   0.30 
gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapi...    34   0.30 
gi|19913398 smoothelin isoform a [Homo sapiens]                        34   0.30 
gi|169234723 lin-54 homolog isoform b [Homo sapiens]                   33   0.39 

>gi|39930473 ligand dependent nuclear receptor corepressor [Homo
           sapiens]
          Length = 433

 Score =  858 bits (2216), Expect = 0.0
 Identities = 433/433 (100%), Positives = 433/433 (100%)

Query: 1   MQRMIQQFAAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMAD 60
           MQRMIQQFAAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMAD
Sbjct: 1   MQRMIQQFAAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMAD 60

Query: 61  QDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYR 120
           QDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYR
Sbjct: 61  QDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYR 120

Query: 121 PDGLRSGDGVPPRSLQDGTREGFGHSTSLKVPLARSLQISEELLSRNQLSTAASLGPSGL 180
           PDGLRSGDGVPPRSLQDGTREGFGHSTSLKVPLARSLQISEELLSRNQLSTAASLGPSGL
Sbjct: 121 PDGLRSGDGVPPRSLQDGTREGFGHSTSLKVPLARSLQISEELLSRNQLSTAASLGPSGL 180

Query: 181 QNHGQHLILSREASWAKPHYEFNLSRMKFRGNGALSNISDLPFLAENSAFPKMALQAKQD 240
           QNHGQHLILSREASWAKPHYEFNLSRMKFRGNGALSNISDLPFLAENSAFPKMALQAKQD
Sbjct: 181 QNHGQHLILSREASWAKPHYEFNLSRMKFRGNGALSNISDLPFLAENSAFPKMALQAKQD 240

Query: 241 GKKDVSHSSPVDLKIPQVRGMDLSWESRTGDQYSYSSLVMGSQTESALSKKLRAILPKQS 300
           GKKDVSHSSPVDLKIPQVRGMDLSWESRTGDQYSYSSLVMGSQTESALSKKLRAILPKQS
Sbjct: 241 GKKDVSHSSPVDLKIPQVRGMDLSWESRTGDQYSYSSLVMGSQTESALSKKLRAILPKQS 300

Query: 301 RKSMLDAGPDSWGSDAEQSTPGQPYPTSDQEGDPGSKQPRKKRGRYRQYNSEILEEAISV 360
           RKSMLDAGPDSWGSDAEQSTPGQPYPTSDQEGDPGSKQPRKKRGRYRQYNSEILEEAISV
Sbjct: 301 RKSMLDAGPDSWGSDAEQSTPGQPYPTSDQEGDPGSKQPRKKRGRYRQYNSEILEEAISV 360

Query: 361 VMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPPKKKMKLMRSEGPDVSVKIELDPQ 420
           VMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPPKKKMKLMRSEGPDVSVKIELDPQ
Sbjct: 361 VMSGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPPKKKMKLMRSEGPDVSVKIELDPQ 420

Query: 421 GEAAQSANESKNE 433
           GEAAQSANESKNE
Sbjct: 421 GEAAQSANESKNE 433


>gi|33667089 ligand dependent nuclear receptor corepressor-like
           [Homo sapiens]
          Length = 318

 Score = 55.5 bits (132), Expect = 9e-08
 Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 13/108 (12%)

Query: 1   MQRMIQQFAAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMAD 60
           M++MI+QFA EY SK+  TQ+       +N S      +  S    + Q       L  +
Sbjct: 161 MKKMIRQFAIEYISKSGKTQE------NRNGS------IGPSIVCKSIQMNQAENSLQEE 208

Query: 61  QDSPLDLTVRKSQSEPSEQ-DGVLDLSTKKSPCAGSTSLSHSPGCSST 107
           Q+ PLDLTV + Q + ++Q DGVLDLSTKK+      S    P   ++
Sbjct: 209 QEGPLDLTVNRMQEQNTQQGDGVLDLSTKKTSIKSEESSICDPSSENS 256


>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
          Length = 5478

 Score = 38.9 bits (89), Expect = 0.009
 Identities = 42/154 (27%), Positives = 61/154 (39%), Gaps = 17/154 (11%)

Query: 7    QFAAEYTSKNSSTQDPSQPNSTKNQSLPKAS---------PVTTSPTAATTQNPVLSKLL 57
            Q +  + S   ST     P+ST +  + +AS         P TT   A++T +P L    
Sbjct: 1076 QESTTFHSNPGSTHTTLFPDSTTSSGIVEASTRVHSSTGSPRTTLSPASST-SPGLQGES 1134

Query: 58   MADQDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPS 117
             A Q  P   +   + S PS     ++ ST      GST  +H P  S+T G+       
Sbjct: 1135 TAFQTHPA--STHTTPSPPSTATAPVEESTTYHRSPGSTPTTHFPASSTTSGHSEKSTIF 1192

Query: 118  QYRPDGLRSGDGVPPRSLQDGTREGFGHSTSLKV 151
               PD      G  P S    T  G G ST+ ++
Sbjct: 1193 HSSPD----ASGTTPSSAH-STTSGRGESTTSRI 1221



 Score = 38.9 bits (89), Expect = 0.009
 Identities = 42/154 (27%), Positives = 61/154 (39%), Gaps = 17/154 (11%)

Query: 7    QFAAEYTSKNSSTQDPSQPNSTKNQSLPKAS---------PVTTSPTAATTQNPVLSKLL 57
            Q +  + S   ST     P+ST +  + +AS         P TT   A++T +P L    
Sbjct: 2159 QESTTFHSSPGSTHTTLFPDSTTSSGIVEASTRVHSSTGSPRTTLSPASST-SPGLQGES 2217

Query: 58   MADQDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPS 117
             A Q  P   +   + S PS     ++ ST      GST  +H P  S+T G+       
Sbjct: 2218 TAFQTHPA--STHTTPSPPSTATAPVEESTTYHRSPGSTPTTHFPASSTTSGHSEKSTIF 2275

Query: 118  QYRPDGLRSGDGVPPRSLQDGTREGFGHSTSLKV 151
               PD      G  P S    T  G G ST+ ++
Sbjct: 2276 HSSPD----ASGTTPSSAH-STTSGRGESTTSRI 2304



 Score = 38.9 bits (89), Expect = 0.009
 Identities = 42/154 (27%), Positives = 61/154 (39%), Gaps = 17/154 (11%)

Query: 7    QFAAEYTSKNSSTQDPSQPNSTKNQSLPKAS---------PVTTSPTAATTQNPVLSKLL 57
            Q +  + S   ST     P+ST +  + +AS         P TT   A++T +P L    
Sbjct: 3716 QESTTFHSSPGSTHTTLFPDSTTSSGIVEASTRVHSSTGSPRTTLSPASST-SPGLQGES 3774

Query: 58   MADQDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPS 117
             A Q  P   +   + S PS     ++ ST      GST  +H P  S+T G+       
Sbjct: 3775 TAFQTHPA--STHTTPSPPSTATAPVEESTTYHRSPGSTPTTHFPASSTTSGHSEKSTIF 3832

Query: 118  QYRPDGLRSGDGVPPRSLQDGTREGFGHSTSLKV 151
               PD      G  P S    T  G G ST+ ++
Sbjct: 3833 HSSPD----ASGTTPSSAH-STTSGRGESTTSRI 3861



 Score = 37.7 bits (86), Expect = 0.020
 Identities = 40/151 (26%), Positives = 58/151 (38%), Gaps = 11/151 (7%)

Query: 7    QFAAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAA--TTQNPVLSKLLMADQDSP 64
            Q +  + S   ST     P+ST +  + +AS    S T +  TT +P  S       +S 
Sbjct: 2633 QESTTFHSSPGSTHTTLFPDSTTSSGIVEASTRVHSSTGSPRTTLSPASSTSPGLQGEST 2692

Query: 65   LDLT----VRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYR 120
               T       + S PS     ++ ST      GST  +H P  S+T G+          
Sbjct: 2693 TFQTHPASTHTTPSPPSTATAPVEESTTYHRSPGSTPTTHFPASSTTSGHSEKSTIFHSS 2752

Query: 121  PDGLRSGDGVPPRSLQDGTREGFGHSTSLKV 151
            PD      G  P S    T  G G ST+ ++
Sbjct: 2753 PD----ASGTTPSSAH-STTSGRGESTTSRI 2778



 Score = 31.6 bits (70), Expect = 1.5
 Identities = 31/143 (21%), Positives = 55/143 (38%), Gaps = 7/143 (4%)

Query: 12   YTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQN-PVLSKLLMADQDSPLD--LT 68
            ++S  ++   PS   ST +  + +++   +SP +  T + P  S      ++S      T
Sbjct: 4721 HSSPVATATTPSPARSTTSGLVEESTAYHSSPGSTQTMHFPESSTASGRSEESRTSHSST 4780

Query: 69   VRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDGLRSGD 128
                 S PS    +++  T      GS + +H P  S+T G       S   PD     +
Sbjct: 4781 THTISSPPSTTSALVEEPTSYHSSPGSIATTHFPESSTTSGRSEESTASHSSPD----TN 4836

Query: 129  GVPPRSLQDGTREGFGHSTSLKV 151
            G+ P      T      ST+  +
Sbjct: 4837 GITPLPAHFTTSGRIAESTTFYI 4859



 Score = 31.2 bits (69), Expect = 1.9
 Identities = 28/110 (25%), Positives = 42/110 (38%), Gaps = 11/110 (10%)

Query: 16   NSSTQDPSQPN--------STKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDL 67
            NS    P+ P         ST +   P ++P T    ++TT     S+       SP+  
Sbjct: 4477 NSKDTTPAPPTTTSAFVELSTTSHGSPSSTPTTHFSASSTTLGR--SEESTTVHSSPVAT 4534

Query: 68   TVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPS 117
                S +  S   G+++ ST      GST   H P  ++T G G     S
Sbjct: 4535 ATTPSPAR-STTSGLVEESTTYHSSPGSTQTMHFPESNTTSGRGEESTTS 4583



 Score = 31.2 bits (69), Expect = 1.9
 Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 15/105 (14%)

Query: 18   STQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQSEPS 77
            ST   S P ST+    P+++  +     +TT +                 T     S PS
Sbjct: 4552 STTYHSSPGSTQTMHFPESNTTSGRGEESTTSH---------------SSTTHTISSAPS 4596

Query: 78   EQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPD 122
                +++  T      GST+ +H P  S+T G       S    D
Sbjct: 4597 TTSALVEEPTSYHSSPGSTATTHFPDSSTTSGRSEESTASHSSQD 4641



 Score = 30.8 bits (68), Expect = 2.5
 Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 15/105 (14%)

Query: 18  STQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQSEPS 77
           ST   S P ST+    P++   +     +TT +                 T     S PS
Sbjct: 829 STTYHSSPGSTQTMHFPESDTTSGRGEESTTSH---------------SSTTHTISSAPS 873

Query: 78  EQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPD 122
               +++  T      GST+ +H P  S+T G       S    D
Sbjct: 874 TTSALVEEPTSYHSSPGSTATTHFPDSSTTSGRSEESTASHSSQD 918



 Score = 30.8 bits (68), Expect = 2.5
 Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 3/114 (2%)

Query: 12   YTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQN-PVLSKLLMADQDSPLD--LT 68
            ++S  ++   PS   ST +  + +++   +SP +  T + P  S      ++S      T
Sbjct: 1888 HSSPVATATTPSPARSTTSGLVEESTAYHSSPGSTQTMHFPESSTASGRSEESRTSHSST 1947

Query: 69   VRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPD 122
                 S PS    +++  T      GST+ +H P  S+T G       S    D
Sbjct: 1948 THTISSPPSTTSALVEEPTSYHSSPGSTATTHFPDSSTTSGRSEESTASHSSQD 2001



 Score = 30.8 bits (68), Expect = 2.5
 Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 15/123 (12%)

Query: 14   SKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATT--QNPVLSKLLMADQDSPLDLTVRK 71
            S+ S+T   S P ST+    P+++  +      TT    P  +   +  +DS       +
Sbjct: 2854 SEESTTVYSSSPGSTETTVFPRSTTTSVRGEEPTTFHSRPASTHTTLFTEDSTTSGLTEE 2913

Query: 72   SQSEP----SEQDGV------LDL---STKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQ 118
            S + P    S Q G+       DL   ST     +GST  + SP  S+T G      PS+
Sbjct: 2914 STAFPGSPASTQTGLPATLTTADLGEESTTFPSSSGSTGTTLSPARSTTSGLVGESTPSR 2973

Query: 119  YRP 121
              P
Sbjct: 2974 LSP 2976



 Score = 30.8 bits (68), Expect = 2.5
 Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 11/110 (10%)

Query: 16   NSSTQDPSQPN--------STKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDL 67
            NS    P+ P         ST +   P ++P T    ++TT     S+       SP+  
Sbjct: 3394 NSKDTTPAPPTTTSAFVELSTTSHGSPSSTPTTHFSASSTTLGR--SEESTTVHSSPVAT 3451

Query: 68   TVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPS 117
                S +  S   G+++ ST      GST   H P   +T G G     S
Sbjct: 3452 ATTPSPAR-STTSGLVEESTTYHSSPGSTQTMHFPESDTTSGRGEESTTS 3500



 Score = 30.8 bits (68), Expect = 2.5
 Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 15/105 (14%)

Query: 18   STQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQSEPS 77
            ST   S P ST+    P++   +     +TT +                 T     S PS
Sbjct: 3469 STTYHSSPGSTQTMHFPESDTTSGRGEESTTSH---------------SSTTHTISSAPS 3513

Query: 78   EQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPD 122
                +++  T      GST+ +H P  S+T G       S    D
Sbjct: 3514 TTSALVEEPTSYHSSPGSTATTHFPDSSTTSGRSEESTASHSSQD 3558



 Score = 30.4 bits (67), Expect = 3.3
 Identities = 33/123 (26%), Positives = 49/123 (39%), Gaps = 15/123 (12%)

Query: 14   SKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATT--QNPVLSKLLMADQDSPLDLTVRK 71
            S+ S+T   S P ST+    P+++  +      TT    P  +   +  +DS       +
Sbjct: 3937 SEESTTVYSSSPGSTETTVFPRSTTTSVRREEPTTFHSRPASTHTTLFTEDSTTSGLTEE 3996

Query: 72   SQSEP----SEQDGV------LDL---STKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQ 118
            S + P    S Q G+       DL   ST     +GST    SP  S+T G      PS+
Sbjct: 3997 STAFPGSPASTQTGLPATLTTADLGEESTTFPSSSGSTGTKLSPARSTTSGLVGESTPSR 4056

Query: 119  YRP 121
              P
Sbjct: 4057 LSP 4059



 Score = 29.6 bits (65), Expect = 5.6
 Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 15/123 (12%)

Query: 14   SKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATT--QNPVLSKLLMADQDSPLDLTVRK 71
            S+ S+T   S P ST+    P+    +      TT    P  +   +  +DS       +
Sbjct: 2380 SEESTTVYSSSPGSTETTVFPRTPTTSVRGEEPTTFHSRPASTHTTLFTEDSTTSGLTEE 2439

Query: 72   SQSEP----SEQDGV------LDL---STKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQ 118
            S + P    S Q G+       DL   ST     +GST  + SP  S+T G      PS+
Sbjct: 2440 STAFPGSPASTQTGLPATLTTADLGEESTTFPSSSGSTGTTLSPARSTTSGLVGESTPSR 2499

Query: 119  YRP 121
              P
Sbjct: 2500 LSP 2502


>gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo
           sapiens]
          Length = 2036

 Score = 38.9 bits (89), Expect = 0.009
 Identities = 42/154 (27%), Positives = 61/154 (39%), Gaps = 17/154 (11%)

Query: 7   QFAAEYTSKNSSTQDPSQPNSTKNQSLPKAS---------PVTTSPTAATTQNPVLSKLL 57
           Q +  + S   ST     P+ST +  + +AS         P TT   A++T +P L    
Sbjct: 563 QESTTFHSNPGSTHTTLFPDSTTSSGIVEASTRVHSSTGSPRTTLSPASST-SPGLQGES 621

Query: 58  MADQDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPS 117
            A Q  P   +   + S PS     ++ ST      GST  +H P  S+T G+       
Sbjct: 622 TAFQTHPA--STHTTPSPPSTATAPVEESTTYHRSPGSTPTTHFPASSTTSGHSEKSTIF 679

Query: 118 QYRPDGLRSGDGVPPRSLQDGTREGFGHSTSLKV 151
              PD      G  P S    T  G G ST+ ++
Sbjct: 680 HSSPD----ASGTTPSSAH-STTSGRGESTTSRI 708



 Score = 31.6 bits (70), Expect = 1.5
 Identities = 31/143 (21%), Positives = 55/143 (38%), Gaps = 7/143 (4%)

Query: 12   YTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQN-PVLSKLLMADQDSPLD--LT 68
            ++S  ++   PS   ST +  + +++   +SP +  T + P  S      ++S      T
Sbjct: 1375 HSSPVATATTPSPARSTTSGLVEESTAYHSSPGSTQTMHFPESSTASGRSEESRTSHSST 1434

Query: 69   VRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDGLRSGD 128
                 S PS    +++  T      GS + +H P  S+T G       S   PD     +
Sbjct: 1435 THTISSPPSTTSALVEEPTSYHSSPGSIATTHFPESSTTSGRSEESTASHSSPD----TN 1490

Query: 129  GVPPRSLQDGTREGFGHSTSLKV 151
            G+ P      T      ST+  +
Sbjct: 1491 GITPLPAHFTTSGRIAESTTFYI 1513



 Score = 30.8 bits (68), Expect = 2.5
 Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 15/105 (14%)

Query: 18  STQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQSEPS 77
           ST   S P ST+    P++   +     +TT +                 T     S PS
Sbjct: 316 STTYHSSPGSTQTMHFPESDTTSGRGEESTTSH---------------SSTTHTISSAPS 360

Query: 78  EQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPD 122
               +++  T      GST+ +H P  S+T G       S    D
Sbjct: 361 TTSALVEEPTSYHSSPGSTATTHFPDSSTTSGRSEESTASHSSQD 405


>gi|239758148 PREDICTED: similar to mucin 11 [Homo sapiens]
          Length = 587

 Score = 38.1 bits (87), Expect = 0.016
 Identities = 64/269 (23%), Positives = 95/269 (35%), Gaps = 30/269 (11%)

Query: 7   QFAAEYTSKNSSTQDPSQPNSTKNQSLPKAS---------PVTTSPTAATTQNPVLSKLL 57
           Q +  + S   ST     P+ST +  + +AS         P TT   A++T +P L    
Sbjct: 235 QESTTFHSSPGSTHTTLFPDSTTSSGIVEASTRVHSSTGSPRTTLSPASST-SPGLQGES 293

Query: 58  MADQDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPS 117
            A Q  P   +   + S PS     ++ ST      GST  +H P  S+T G+       
Sbjct: 294 TAFQTHPA--STHTTPSPPSTATAPVEESTTYHRSPGSTPTTHFPASSTTSGHSEKSTIF 351

Query: 118 QYRPDGL--------RSGDGVPPRSLQDGTREGFGHSTSLKVPLARSLQISEELLSR-NQ 168
              PD           +  GV   S    ++ G  H+T+       S    E   S  +Q
Sbjct: 352 HSSPDASGTTPSSAHSTTSGVSEESSTSHSQPGSTHTTAFPDSTTTSGLSQEPTTSHSSQ 411

Query: 169 LSTAASL-------GPSGLQNHGQHLILSREASWAKPHYEFNLSRMKFRGNGALSNISDL 221
            ST A+L       G +           SR +S    H  F+ S      +   + +   
Sbjct: 412 GSTEATLDTTPSPPGTTAAPVEVSTTYHSRPSSTPTTH--FSASSTTLGRSEESTTVHSS 469

Query: 222 PFLAENSAFPKMALQAKQDGKKDVSHSSP 250
           P   E +A P     A    K    +SSP
Sbjct: 470 PGSTETTALPGSTTTAGLSEKSTTFYSSP 498


>gi|239752490 PREDICTED: similar to Mucin-12 [Homo sapiens]
          Length = 456

 Score = 38.1 bits (87), Expect = 0.016
 Identities = 64/269 (23%), Positives = 95/269 (35%), Gaps = 30/269 (11%)

Query: 7   QFAAEYTSKNSSTQDPSQPNSTKNQSLPKAS---------PVTTSPTAATTQNPVLSKLL 57
           Q +  + S   ST     P+ST +  + +AS         P TT   A++T +P L    
Sbjct: 129 QESTTFHSSPGSTHTTLFPDSTTSSGIVEASTRVHSSTGSPRTTLSPASST-SPGLQGES 187

Query: 58  MADQDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPS 117
            A Q  P   +   + S PS     ++ ST      GST  +H P  S+T G+       
Sbjct: 188 TAFQTHPA--STHTTPSPPSTATAPVEESTTYHRSPGSTPTTHFPASSTTSGHSEKSTIF 245

Query: 118 QYRPDGL--------RSGDGVPPRSLQDGTREGFGHSTSLKVPLARSLQISEELLSR-NQ 168
              PD           +  GV   S    ++ G  H+T+       S    E   S  +Q
Sbjct: 246 HSSPDASGTTPSSAHSTTSGVSEESSTSHSQPGSTHTTAFPDSTTTSGLSQEPTTSHSSQ 305

Query: 169 LSTAASL-------GPSGLQNHGQHLILSREASWAKPHYEFNLSRMKFRGNGALSNISDL 221
            ST A+L       G +           SR +S    H  F+ S      +   + +   
Sbjct: 306 GSTEATLDTTPSPPGTTAAPVEVSTTYHSRPSSTPTTH--FSASSTTLGRSEESTTVHSS 363

Query: 222 PFLAENSAFPKMALQAKQDGKKDVSHSSP 250
           P   E +A P     A    K    +SSP
Sbjct: 364 PGSTETTALPGSTTTAGLSEKSTTFYSSP 392


>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
           S1 isoform 6 [Homo sapiens]
          Length = 305

 Score = 37.4 bits (85), Expect = 0.027
 Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 11/121 (9%)

Query: 14  SKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQ 73
           +K SST+ PS P   K++S  K+    +    AT ++        +++D   D T RK +
Sbjct: 18  NKKSSTRAPS-PTKRKDRSDEKSKD-RSKDKGATKES--------SEKDRGRDKT-RKRR 66

Query: 74  SEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDGLRSGDGVPPR 133
           S  S        S+  S    STS   S G SS+  + R G  S  R     S  G P  
Sbjct: 67  SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126

Query: 134 S 134
           S
Sbjct: 127 S 127


>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
           S1 isoform 2 [Homo sapiens]
          Length = 305

 Score = 37.4 bits (85), Expect = 0.027
 Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 11/121 (9%)

Query: 14  SKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQ 73
           +K SST+ PS P   K++S  K+    +    AT ++        +++D   D T RK +
Sbjct: 18  NKKSSTRAPS-PTKRKDRSDEKSKD-RSKDKGATKES--------SEKDRGRDKT-RKRR 66

Query: 74  SEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDGLRSGDGVPPR 133
           S  S        S+  S    STS   S G SS+  + R G  S  R     S  G P  
Sbjct: 67  SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126

Query: 134 S 134
           S
Sbjct: 127 S 127


>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
           sapiens]
          Length = 305

 Score = 37.4 bits (85), Expect = 0.027
 Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 11/121 (9%)

Query: 14  SKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQ 73
           +K SST+ PS P   K++S  K+    +    AT ++        +++D   D T RK +
Sbjct: 18  NKKSSTRAPS-PTKRKDRSDEKSKD-RSKDKGATKES--------SEKDRGRDKT-RKRR 66

Query: 74  SEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDGLRSGDGVPPR 133
           S  S        S+  S    STS   S G SS+  + R G  S  R     S  G P  
Sbjct: 67  SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126

Query: 134 S 134
           S
Sbjct: 127 S 127


>gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
           sapiens]
          Length = 305

 Score = 37.4 bits (85), Expect = 0.027
 Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 11/121 (9%)

Query: 14  SKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQ 73
           +K SST+ PS P   K++S  K+    +    AT ++        +++D   D T RK +
Sbjct: 18  NKKSSTRAPS-PTKRKDRSDEKSKD-RSKDKGATKES--------SEKDRGRDKT-RKRR 66

Query: 74  SEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDGLRSGDGVPPR 133
           S  S        S+  S    STS   S G SS+  + R G  S  R     S  G P  
Sbjct: 67  SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126

Query: 134 S 134
           S
Sbjct: 127 S 127


>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
           S1 [Homo sapiens]
          Length = 305

 Score = 37.0 bits (84), Expect = 0.035
 Identities = 36/121 (29%), Positives = 50/121 (41%), Gaps = 11/121 (9%)

Query: 14  SKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQ 73
           +K SST+ PS P   K++S  K+    +    AT ++        +++D   D T RK  
Sbjct: 18  NKKSSTRAPS-PTKRKDRSDEKSKD-RSKDKGATKES--------SEKDRGRDKT-RKRH 66

Query: 74  SEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDGLRSGDGVPPR 133
           S  S        S+  S    STS   S G SS+  + R G  S  R     S  G P  
Sbjct: 67  SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126

Query: 134 S 134
           S
Sbjct: 127 S 127


>gi|169166499 PREDICTED: similar to ribonucleic acid binding protein
           S1 [Homo sapiens]
          Length = 305

 Score = 37.0 bits (84), Expect = 0.035
 Identities = 36/121 (29%), Positives = 50/121 (41%), Gaps = 11/121 (9%)

Query: 14  SKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQ 73
           +K SST+ PS P   K++S  K+    +    AT ++        +++D   D T RK  
Sbjct: 18  NKKSSTRAPS-PTKRKDRSDEKSKD-RSKDKGATKES--------SEKDRGRDKT-RKRH 66

Query: 74  SEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDGLRSGDGVPPR 133
           S  S        S+  S    STS   S G SS+  + R G  S  R     S  G P  
Sbjct: 67  SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126

Query: 134 S 134
           S
Sbjct: 127 S 127


>gi|113415498 PREDICTED: similar to ribonucleic acid binding protein
           S1 [Homo sapiens]
          Length = 305

 Score = 37.0 bits (84), Expect = 0.035
 Identities = 36/121 (29%), Positives = 50/121 (41%), Gaps = 11/121 (9%)

Query: 14  SKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQ 73
           +K SST+ PS P   K++S  K+    +    AT ++        +++D   D T RK  
Sbjct: 18  NKKSSTRAPS-PTKRKDRSDEKSKD-RSKDKGATKES--------SEKDRGRDKT-RKRH 66

Query: 74  SEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDGLRSGDGVPPR 133
           S  S        S+  S    STS   S G SS+  + R G  S  R     S  G P  
Sbjct: 67  SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126

Query: 134 S 134
           S
Sbjct: 127 S 127


>gi|88973230 PREDICTED: similar to ribonucleic acid binding protein
           S1 isoform 3 [Homo sapiens]
          Length = 305

 Score = 37.0 bits (84), Expect = 0.035
 Identities = 36/121 (29%), Positives = 50/121 (41%), Gaps = 11/121 (9%)

Query: 14  SKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQ 73
           +K SST+ PS P   K++S  K+    +    AT ++        +++D   D T RK  
Sbjct: 18  NKKSSTRAPS-PTKRKDRSDEKSKD-RSKDKGATKES--------SEKDRGRDKT-RKRH 66

Query: 74  SEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDGLRSGDGVPPR 133
           S  S        S+  S    STS   S G SS+  + R G  S  R     S  G P  
Sbjct: 67  SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSP 126

Query: 134 S 134
           S
Sbjct: 127 S 127


>gi|154816198 transcription elongation factor B polypeptide 3C-like
           [Homo sapiens]
          Length = 546

 Score = 35.8 bits (81), Expect = 0.078
 Identities = 43/180 (23%), Positives = 67/180 (37%), Gaps = 9/180 (5%)

Query: 84  DLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDG---LRSGDGVPPRSLQDGTR 140
           D    + P   +  L    G        +PGR   +   G   L  G    P+    G+ 
Sbjct: 164 DSGPHRDPPTRTAPLPMPEGPEPAVPGEQPGRGHAHAAQGGPLLGQGCQGQPQGEAVGSH 223

Query: 141 EGFGHSTSLKVPLARSLQISEELLSRNQLSTAASLGPSGLQNHGQHLILSREASWAKPHY 200
              GH +S      +S  + E    R Q + A S GP  + +H    +     +W + +Y
Sbjct: 224 SK-GHKSSRGASAQKSPPVQESQSERLQAAGADSAGPKTVPSHVFSELWDPSEAWMQANY 282

Query: 201 EFNLSRMKFRGNGALSNISDLPFLAENSAFPKMALQAKQDGKKDVSHSSPV-DLKIPQVR 259
           +  LS  +   + A       P L E +AFP   + AK       S S P   L++P +R
Sbjct: 283 DL-LSAFEAMTSQANPEALSAPTLQEEAAFPGRRVNAKM---PVYSGSRPACQLQVPTLR 338


>gi|156938279 transcription elongation factor B polypeptide 3C [Homo
           sapiens]
          Length = 546

 Score = 35.8 bits (81), Expect = 0.078
 Identities = 43/180 (23%), Positives = 67/180 (37%), Gaps = 9/180 (5%)

Query: 84  DLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDG---LRSGDGVPPRSLQDGTR 140
           D    + P   +  L    G        +PGR   +   G   L  G    P+    G+ 
Sbjct: 164 DSGPHRDPPTRTAPLPMPEGPEPAVPGEQPGRGHAHAAQGGPLLGQGCQGQPQGEAVGSH 223

Query: 141 EGFGHSTSLKVPLARSLQISEELLSRNQLSTAASLGPSGLQNHGQHLILSREASWAKPHY 200
              GH +S      +S  + E    R Q + A S GP  + +H    +     +W + +Y
Sbjct: 224 SK-GHKSSRGASAQKSPPVQESQSERLQAAGADSAGPKTVPSHVFSELWDPSEAWMQANY 282

Query: 201 EFNLSRMKFRGNGALSNISDLPFLAENSAFPKMALQAKQDGKKDVSHSSPV-DLKIPQVR 259
           +  LS  +   + A       P L E +AFP   + AK       S S P   L++P +R
Sbjct: 283 DL-LSAFEAMTSQANPEALSAPALQEEAAFPGRRVNAKM---PVYSGSRPACQLQVPTLR 338


>gi|91982772 mucin 17 [Homo sapiens]
          Length = 4493

 Score = 35.4 bits (80), Expect = 0.10
 Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 3/94 (3%)

Query: 14   SKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQ 73
            + +++ +  S P ST ++ +   + V  S T   +    +      D ++PL  +   S 
Sbjct: 3202 TSSTTAEGTSIPTSTPSEGMTPLTSVPVSNTPVASSEASILSTTPVDSNTPLTTSTEASS 3261

Query: 74   SEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSST 107
            S P+ +   +  ST   P  GST L+  P  ++T
Sbjct: 3262 SPPTAEGTSMPTST---PSEGSTPLTSMPVSTTT 3292



 Score = 33.5 bits (75), Expect = 0.39
 Identities = 41/173 (23%), Positives = 70/173 (40%), Gaps = 14/173 (8%)

Query: 9    AAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAAT-TQNPVLSKL--LMADQDSPL 65
            + E TS  ++ +  S P ST ++     +P+T++P + T   N   S L     D ++PL
Sbjct: 958  STEATSSPTTAEGTSIPTSTPSEG---TTPLTSTPVSHTLVANSEASTLSTTPVDSNTPL 1014

Query: 66   DLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDGLR 125
              +   S   P+ +   +  ST   P  GST L+  P  ++   +      S    D   
Sbjct: 1015 TTSTEASSPPPTAEGTSMPTST---PSEGSTPLTRMPVSTTMVASSETSTLSTTPADTST 1071

Query: 126  SGDGVPPRSLQDGTREGFGHSTSL----KVPLARSLQISEELLSRNQLSTAAS 174
                    S    T +G    TS       PL  S+ +S  L+  ++ ST ++
Sbjct: 1072 PVTTYSQASSSSTTADGTSMPTSTYSEGSTPLT-SVPVSTRLVVSSEASTLST 1123



 Score = 33.1 bits (74), Expect = 0.50
 Identities = 39/177 (22%), Positives = 75/177 (42%), Gaps = 21/177 (11%)

Query: 13   TSKNSSTQDPSQPNSTKNQSLPK------ASPVTTSPTAATTQNPVLSKLLMADQDSPLD 66
            T   +ST+  S P +++  S+P       ++P+T+ P + T   PV+S        +P+D
Sbjct: 894  TPVTNSTEARSSPTTSEGTSMPTSTPGEGSTPLTSMPDSTT---PVVSSEARTLSATPVD 950

Query: 67   -----LTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRP 121
                  T  ++ S P+  +G   + T  +P  G+T L+ +P   +   N      S    
Sbjct: 951  TSTPVTTSTEATSSPTTAEGT-SIPT-STPSEGTTPLTSTPVSHTLVANSEASTLSTTPV 1008

Query: 122  DG----LRSGDGVPPRSLQDGTREGFGHSTSLKVPLARSLQISEELLSRNQLSTAAS 174
            D       S +   P    +GT       +    PL R + +S  +++ ++ ST ++
Sbjct: 1009 DSNTPLTTSTEASSPPPTAEGTSMPTSTPSEGSTPLTR-MPVSTTMVASSETSTLST 1064



 Score = 32.0 bits (71), Expect = 1.1
 Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 7/101 (6%)

Query: 9    AAEYTSKNSSTQDPSQPNSTKNQSLP--KASPVTTSPTAATTQNPVLSKLLMADQDSPLD 66
            +AE TS  ++ +  S P ST ++     K+ PV+ +P A +  + +       D +SP+ 
Sbjct: 1430 SAEATSSPTTAEGISIPTSTPSEGKTPLKSIPVSNTPVANSEASTL--STTPVDSNSPVV 1487

Query: 67   LTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSST 107
             +   S S    +   + +ST   P  GST+L+  P  ++T
Sbjct: 1488 TSTAVSSSPTPAEGTSIAIST---PSEGSTALTSIPVSTTT 1525



 Score = 32.0 bits (71), Expect = 1.1
 Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 12/99 (12%)

Query: 13   TSKNSSTQDPSQPNSTKNQSLPKASPVT-TSPTAA--TTQNPVLSK------LLMADQDS 63
            T   +ST+  S P + +  S+P + P   T+P A+   +  PV+S           D  +
Sbjct: 2426 TPVTTSTEASSSPTTAEGTSIPTSPPSEGTTPLASMPVSTTPVVSSEAGTLSTTPVDTST 2485

Query: 64   PLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSP 102
            P+  +   S S  + +D V+ +ST      GST L+  P
Sbjct: 2486 PMTTSTEASSSPTTAEDIVVPISTASE---GSTLLTSIP 2521



 Score = 31.2 bits (69), Expect = 1.9
 Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 9/102 (8%)

Query: 9    AAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAAT-TQNPVLSKL--LMADQDSPL 65
            + E TS  ++ +  S P ST ++ +   +P+T++P + T   N   S L     D +SP+
Sbjct: 1783 STEATSSPTTAEGTSIPTSTLSEGM---TPLTSTPVSHTLVANSEASTLSTTPVDSNSPV 1839

Query: 66   DLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSST 107
             +T     S P+  +G   ++T  +P  GST+L+  P  ++T
Sbjct: 1840 -VTSTAVSSSPTPAEGT-SIAT-STPSEGSTALTSIPVSTTT 1878



 Score = 30.4 bits (67), Expect = 3.3
 Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 3/93 (3%)

Query: 10   AEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTV 69
            A+ +S  ++    S P ST  +  P  + +  S T   +         +AD  +P+  T 
Sbjct: 1902 AQVSSSPTTADGSSMPTSTPREGRPPLTSIPVSTTTVASSEINTLSTTLADTRTPV-TTY 1960

Query: 70   RKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSP 102
             ++ S P+  DG    +   S   GST L+  P
Sbjct: 1961 SQASSSPTTADGTSMPTPAYS--EGSTPLTSMP 1991



 Score = 30.4 bits (67), Expect = 3.3
 Identities = 39/171 (22%), Positives = 72/171 (42%), Gaps = 17/171 (9%)

Query: 17   SSTQDPSQPNSTKNQSLPKASPVTTS---PTAATTQNPVLSKLLMADQDSPLD-----LT 68
            +ST+  S P + +  S+P ++P  TS    +      PV S        +P+D      T
Sbjct: 2784 TSTEASSSPTTAEVTSMPTSTPSETSTPLTSMPVNHTPVASSEAGTLSTTPVDTSTPVTT 2843

Query: 69   VRKSQSEPSEQDG-VLDLSTKKSPCAGSTSLSHSP----GCSSTQGNGRPGRPSQYRPDG 123
              K+ S P+  +G V+ +ST      GST L+  P      +S++ +     P       
Sbjct: 2844 STKASSSPTTAEGIVVPISTASE---GSTLLTSIPVSTTPVASSEASTLSTTPVDTSIPV 2900

Query: 124  LRSGDGVPPRSLQDGTREGFGHSTSLKVPLARSLQISEELLSRNQLSTAAS 174
              S +G    +  +GT       + +  PL  S+ +S   ++ ++ ST ++
Sbjct: 2901 TTSTEGSSSPTTAEGTSMPISTPSEVSTPLT-SILVSTVPVAGSEASTLST 2950



 Score = 30.0 bits (66), Expect = 4.3
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 13   TSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLT 68
            T   +ST+  S P +++  S+P ++P  +  +   T  PV + L+++ +DS L  T
Sbjct: 3134 TPVTTSTEAHSSPTTSEGTSMPTSTP--SEGSTPLTYMPVSTMLVVSSEDSTLSAT 3187



 Score = 29.6 bits (65), Expect = 5.6
 Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 16/109 (14%)

Query: 13   TSKNSSTQDPSQPNSTKNQSLPKA------SPVTTSPTAATTQNPVLSKLLMADQDSPLD 66
            T   +ST+  S P +++  S+P +      +P+T+ P + T   PV+S        +P+D
Sbjct: 1366 TPVTTSTEACSSPTTSEGTSMPNSNPSEGTTPLTSIPVSTT---PVVSSEASTLSATPVD 1422

Query: 67   -----LTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGN 110
                  T  ++ S P+  +G+  + T  +P  G T L   P  ++   N
Sbjct: 1423 TSTPGTTSAEATSSPTTAEGI-SIPT-STPSEGKTPLKSIPVSNTPVAN 1469



 Score = 29.6 bits (65), Expect = 5.6
 Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 16/102 (15%)

Query: 9    AAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLD-- 66
            + E  S  ++++  S PNST ++     +P+T+ P + T   PVLS        +P+D  
Sbjct: 1724 STEARSSPTTSEGTSMPNSTPSEG---TTPLTSIPVSTT---PVLSSEASTLSATPIDTS 1777

Query: 67   ---LTVRKSQSEPSEQDG----VLDLSTKKSPCAGSTSLSHS 101
                T  ++ S P+  +G       LS   +P   ST +SH+
Sbjct: 1778 TPVTTSTEATSSPTTAEGTSIPTSTLSEGMTPLT-STPVSHT 1818



 Score = 29.6 bits (65), Expect = 5.6
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 9    AAEYTSKNSSTQDPSQPNSTKNQ-SLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDL 67
            +AE +S  ++ +  S P ST  +   P  S   ++   A+++   LS+   AD  +P+  
Sbjct: 2962 SAEASSSPTTAEGTSMPISTPGERRTPLTSMSVSTMPVASSEASTLSR-TPADTSTPVTT 3020

Query: 68   TVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSP 102
            +   S S  + +   + +ST   P  GST L+  P
Sbjct: 3021 STEASSSPTTAEGTGIPIST---PSEGSTPLTSIP 3052



 Score = 29.3 bits (64), Expect = 7.3
 Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 12/95 (12%)

Query: 17  SSTQDPSQPNSTKNQSLPKASPV--TTSPTAATTQNPVL-------SKLLMADQDSPLDL 67
           SST+D S P + +   +P ++P   + S T A      L       S     D  +PL  
Sbjct: 131 SSTEDTSSPTTPEGTDVPMSTPSEESISSTMAFVSTAPLPSFEAYTSLTYKVDMSTPLTT 190

Query: 68  TVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSP 102
           + + S S  + +   +  ST      GST L+  P
Sbjct: 191 STQASSSPTTPESTTIPKSTNSE---GSTPLTSMP 222



 Score = 29.3 bits (64), Expect = 7.3
 Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 16/101 (15%)

Query: 13  TSKNSSTQDPSQPNSTKNQSLPK------ASPVTTSPTAATTQNPVLSKLLM-----ADQ 61
           T   +STQ  S P + ++ ++PK      ++P+T+ P  A+T     S+ +       + 
Sbjct: 186 TPLTTSTQASSSPTTPESTTIPKSTNSEGSTPLTSMP--ASTMKVASSEAITLLTTPVEI 243

Query: 62  DSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSP 102
            +P+ ++ + S S  + +   L   +  +P  GST L+  P
Sbjct: 244 STPVTISAQASSSPTTAEGPSL---SNSAPSGGSTPLTRMP 281



 Score = 29.3 bits (64), Expect = 7.3
 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 4/97 (4%)

Query: 13   TSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVR-- 70
            T    ST   S P ST   ++P+AS ++T+P    + +PV++   ++   +P + T    
Sbjct: 3040 TPSEGSTPLTSIPVSTTPVAIPEASTLSTTP--VDSNSPVVTSTEVSSSPTPAEGTSMPI 3097

Query: 71   KSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSST 107
             + SE S     + +ST     +  ++LS +P  +ST
Sbjct: 3098 STYSEGSTPLTGVPVSTTPVTSSAISTLSTTPVDTST 3134


>gi|161019170 mucin 5AC [Homo sapiens]
          Length = 6207

 Score = 34.7 bits (78), Expect = 0.17
 Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 11/145 (7%)

Query: 34   PKASP-VTTSPTAATTQNPVLSKLLMADQ-DSPLDLTVRKSQSEP--SEQDGVLDLSTKK 89
            P +SP +T +P A+TT  P LS+ L + +  S L        + P  S +  V  ++T  
Sbjct: 2326 PTSSPGLTRAPPASTTAVPTLSEGLTSPRYTSTLGTATTGGPTTPAGSTEPTVPGVATST 2385

Query: 90   SPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDGLRSGDGVPPRSLQDGTREGFGHSTSL 149
             P     + S  PG + + G  RP +P    P  + +    P  +    ++E    +TSL
Sbjct: 2386 LP-----TRSALPGTTGSLGTWRPSQPPTLAPTTMATSRARPTGTASTASKEPL--TTSL 2438

Query: 150  KVPLARSLQISEELLSRNQLSTAAS 174
               L   L  S+   S  +  T  S
Sbjct: 2439 APTLTSELSTSQAETSTPRTETTMS 2463


>gi|195972805 myocyte enhancer factor 2A isoform 4 [Homo sapiens]
          Length = 429

 Score = 34.7 bits (78), Expect = 0.17
 Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 19/108 (17%)

Query: 248 SSPVDLKIPQVRGMDLSWESRTGDQYSYSSLVMGSQ----------TESALSKKLRAILP 297
           +SP  L + QV     +W+     Q + SSLV G Q          T   +S K   I P
Sbjct: 276 NSPGMLSLGQVS----AWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISP 331

Query: 298 KQSRKSMLDAGPDSWGSDAEQSTPGQPYPTSDQEGDPGSKQPRKKRGR 345
            + R +     P  +    +Q    QP P    +  P   QPR++ GR
Sbjct: 332 PRDRMT-----PSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGR 374


>gi|195972803 myocyte enhancer factor 2A isoform 3 [Homo sapiens]
          Length = 437

 Score = 34.7 bits (78), Expect = 0.17
 Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 19/108 (17%)

Query: 248 SSPVDLKIPQVRGMDLSWESRTGDQYSYSSLVMGSQ----------TESALSKKLRAILP 297
           +SP  L + QV     +W+     Q + SSLV G Q          T   +S K   I P
Sbjct: 284 NSPGMLSLGQVS----AWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISP 339

Query: 298 KQSRKSMLDAGPDSWGSDAEQSTPGQPYPTSDQEGDPGSKQPRKKRGR 345
            + R +     P  +    +Q    QP P    +  P   QPR++ GR
Sbjct: 340 PRDRMT-----PSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGR 382


>gi|195972801 myocyte enhancer factor 2A isoform 2 [Homo sapiens]
          Length = 497

 Score = 34.7 bits (78), Expect = 0.17
 Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 19/108 (17%)

Query: 248 SSPVDLKIPQVRGMDLSWESRTGDQYSYSSLVMGSQ----------TESALSKKLRAILP 297
           +SP  L + QV     +W+     Q + SSLV G Q          T   +S K   I P
Sbjct: 344 NSPGMLSLGQVS----AWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISP 399

Query: 298 KQSRKSMLDAGPDSWGSDAEQSTPGQPYPTSDQEGDPGSKQPRKKRGR 345
            + R +     P  +    +Q    QP P    +  P   QPR++ GR
Sbjct: 400 PRDRMT-----PSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGR 442


>gi|195972799 myocyte enhancer factor 2A isoform 1 [Homo sapiens]
          Length = 499

 Score = 34.7 bits (78), Expect = 0.17
 Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 19/108 (17%)

Query: 248 SSPVDLKIPQVRGMDLSWESRTGDQYSYSSLVMGSQ----------TESALSKKLRAILP 297
           +SP  L + QV     +W+     Q + SSLV G Q          T   +S K   I P
Sbjct: 346 NSPGMLSLGQVS----AWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISP 401

Query: 298 KQSRKSMLDAGPDSWGSDAEQSTPGQPYPTSDQEGDPGSKQPRKKRGR 345
            + R +     P  +    +Q    QP P    +  P   QPR++ GR
Sbjct: 402 PRDRMT-----PSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGR 444


>gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]
          Length = 5765

 Score = 34.7 bits (78), Expect = 0.17
 Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 11/145 (7%)

Query: 34   PKASP-VTTSPTAATTQNPVLSKLLMADQ-DSPLDLTVRKSQSEP--SEQDGVLDLSTKK 89
            P +SP +T +P A+TT  P LS+ L + +  S L        + P  S +  V  ++T  
Sbjct: 1636 PTSSPGLTRAPPASTTAVPTLSEGLTSPRYTSTLGTATTGGPTTPAGSTEPTVPGVATST 1695

Query: 90   SPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDGLRSGDGVPPRSLQDGTREGFGHSTSL 149
             P     + S  PG + + G  RP +P    P  + +    P  +    ++E    +TSL
Sbjct: 1696 LP-----TRSALPGTTGSLGTWRPSQPPTLAPTTMATSRARPTGTASTASKEPL--TTSL 1748

Query: 150  KVPLARSLQISEELLSRNQLSTAAS 174
               L   L  S+   S  +  T  S
Sbjct: 1749 APTLTSELSTSQAETSTPRTETTMS 1773


>gi|28559039 mediator complex subunit 1 [Homo sapiens]
          Length = 1581

 Score = 34.7 bits (78), Expect = 0.17
 Identities = 88/393 (22%), Positives = 144/393 (36%), Gaps = 62/393 (15%)

Query: 12   YTSKNSSTQDPSQPNSTKNQSLPKASPVT-------TSPTAATTQ-------NPVLSKLL 57
            Y+S+ SS    S+ NS+++   P +SP+T       +S T    Q       NP LSK  
Sbjct: 1132 YSSQGSSGSSQSK-NSSQSGGKPGSSPITKHGLSSGSSSTKMKPQGKPSSLMNPSLSKPN 1190

Query: 58   MADQDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGN------G 111
            ++   S       K  S      G    S  KSP +  +  SH  G SS+ G       G
Sbjct: 1191 ISPSHSRPPGGSDKLASPMKPVPGTPPSSKAKSPISSGSGGSHMSGTSSSSGMKSSSGLG 1250

Query: 112  RPGRPSQYRPDGLR-----------SGDGVPPRSLQDGTREGFGHSTSLKVPLARSLQIS 160
              G  SQ  P               SG  +     Q G+ +G   S + K  L   +   
Sbjct: 1251 SSGSLSQKTPPSSNSCTASSSSFSSSGSSMSSSQNQHGSSKGKSPSRNKKPSLTAVI--- 1307

Query: 161  EELLSRNQLSTAASLGPSGLQNHGQHLILSREASWAKPHYEFNLSRMKFRGNGALSNISD 220
             + L    +++    GP G       + +S  +S      + N+S  +F+G    S+   
Sbjct: 1308 -DKLKHGVVTS----GPGGEDPLDGQMGVSTNSSSHPMSSKHNMSGGEFQGKREKSDKDK 1362

Query: 221  LPFLAENSAFPKMALQAKQDGKKDVSHSSPVDLKIPQVRGMDLSWESRTGDQYSYSSLVM 280
                   S+        K    K+V  +    + I +  G   S +++   Q    S   
Sbjct: 1363 SKVSTSGSSVDS---SKKTSESKNVGSTGVAKIIISKHDGGSPSIKAKVTLQKPGESSGE 1419

Query: 281  GSQTESALSKKLRAIL-----PKQSRKS------------MLDAGPDSWGSDAEQSTPGQ 323
            G + + A SK   + L     PK  R S             LD+  +S  S AE+S   Q
Sbjct: 1420 GLRPQMASSKNYGSPLISGSTPKHERGSPSHSKSPAYTPQNLDSESESGSSIAEKSY--Q 1477

Query: 324  PYPTSDQEGDPGSKQPRKKRGRYRQYNSEILEE 356
              P+SD    P  +   +K  ++++   ++ ++
Sbjct: 1478 NSPSSDDGIRPLPEYSTEKHKKHKKEKKKVKDK 1510


>gi|16507200 ubiquitin specific protease 28 [Homo sapiens]
          Length = 1077

 Score = 34.7 bits (78), Expect = 0.17
 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 6/91 (6%)

Query: 7   QFAAEYTSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLD 66
           Q + E TS  SS+QD     S+   SLPK+ P+T+S ++    +    + +  ++ + + 
Sbjct: 483 QTSKESTSTESSSQDVESTFSSPEDSLPKSKPLTSSRSSMEMPSQPAPRTVTDEEINFVK 542

Query: 67  LTVRKSQSEPSEQDGVLDLSTKKSPCAGSTS 97
             +++ +SE  EQD + DL T    C  ST+
Sbjct: 543 TCLQRWRSE-IEQD-IQDLKT----CIASTT 567


>gi|171460948 TSC22 domain family, member 1 isoform 1 [Homo sapiens]
          Length = 1073

 Score = 34.7 bits (78), Expect = 0.17
 Identities = 82/344 (23%), Positives = 129/344 (37%), Gaps = 55/344 (15%)

Query: 17   SSTQDPSQ--PNSTKNQSLPKASPVTTSPTAAT--------TQNPVL-SKLLMADQDSPL 65
            ++ Q PS   P S   Q  P +S V   P A T        T  P L  +L++A Q S L
Sbjct: 740  TAVQQPSTQVPPSVIQQGAPPSSQVV--PPAQTGIIHQGVQTSAPSLPQQLVIASQSSLL 797

Query: 66   DLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQ-YRPDGL 124
             +  +    EP  Q  V       S    ++S+S +   SST  +G P  P+    P  +
Sbjct: 798  TVPPQPQGVEPVAQGIVSQQLPAVSSLPSASSISVTSQVSSTGPSGMPSAPTNLVPPQNI 857

Query: 125  RSGDGVPPRSLQDGTREGFGHSTSLKVPLARSLQISEELLSRNQLSTAASLGPSGLQNHG 184
                     +L     +    +T+  +PLA+ + +S    S   L+ A           G
Sbjct: 858  AQTPATQNGNLVQSVSQPPLIATNTNLPLAQQIPLSSTQFSAQSLAQAI----------G 907

Query: 185  QHLILSREASWAKPHYEFNLSRMKFRGNGALSNISD---LPFLAENSAFPKMALQAKQ-- 239
              +  +R A  A+P     L +     +G +S +SD       A  S FP   L      
Sbjct: 908  SQIEDARRA--AEPSL-VGLPQTISGDSGGMSAVSDGSSSSLAASASLFPLKVLPLTTPL 964

Query: 240  -DGKKDVSHSSPV---DLKIPQVRGMDLSWESRTGDQYSYSSLVMGSQTE-SALSKKLRA 294
             DG+ + S  + V   D KI Q   MDL            S L+   + E   L ++++ 
Sbjct: 965  VDGEDESSSGASVVAIDNKIEQ--AMDL----------VKSHLMYAVREEVEVLKEQIKE 1012

Query: 295  ILPKQSRKSMLD------AGPDSWGSDAEQSTPGQPYPTSDQEG 332
            ++ K S+    +      A P+       Q   G P  T+  +G
Sbjct: 1013 LIEKNSQLEQENNLLKTLASPEQLAQFQAQLQTGSPPATTQPQG 1056


>gi|7662184 zinc finger homeobox 1b [Homo sapiens]
          Length = 1214

 Score = 33.9 bits (76), Expect = 0.30
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 9/93 (9%)

Query: 21  DPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLSKLLMADQDSPLDLTVRKSQSEPSEQD 80
           D S+ N+    +L   S    S +++ T N   S+ L A+   PLDL++ K   EP    
Sbjct: 776 DHSRSNTPSPLNLSSTSS-KNSHSSSYTPNSFSSEELQAE---PLDLSLPKQMKEPKSI- 830

Query: 81  GVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRP 113
               ++TK    A S SL H+   SS++ +  P
Sbjct: 831 ----IATKNKTKASSISLDHNSVSSSSENSDEP 859


>gi|239752594 PREDICTED: hypothetical protein, partial [Homo
           sapiens]
          Length = 673

 Score = 33.9 bits (76), Expect = 0.30
 Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 2/128 (1%)

Query: 14  SKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQN--PVLSKLLMADQDSPLDLTVRK 71
           S  S T+ PS+P++      P  + ++ +P+ A+     P  S   M  + S   +    
Sbjct: 270 STASITRTPSRPSTASPTGTPSRASLSMTPSTASLMRMLPRASPTGMLSRTSLTKMDSTA 329

Query: 72  SQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDGLRSGDGVP 131
           S S    +  +    ++ SP    ++ S +   S     G P   S        S  G P
Sbjct: 330 SISRTPPRASITRTPSRASPTGKPSTASPTGTPSRASPTGSPSTASLTGLSSTASPTGTP 389

Query: 132 PRSLQDGT 139
           PR+   GT
Sbjct: 390 PRASPTGT 397



 Score = 31.2 bits (69), Expect = 1.9
 Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 5/119 (4%)

Query: 17  SSTQDPSQPNSTKNQSLPKASPVTTSPTAA-TTQNPVLSKLLMADQDSPLDLTVRKSQSE 75
           + T   + P  T++ + P  SP T SPT + +T +P  S    +   +P   ++ K +S 
Sbjct: 449 TGTPSRASPTGTQSTASPTGSPSTASPTGSPSTASPTGSPSRASLTRTPSRASLTKMEST 508

Query: 76  PSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPDGLRSGDGVPPRS 134
            S    +    ++ SP    ++ S +   S+    G P R +  R     S    P R+
Sbjct: 509 AS----ITRTPSRASPTWTPSTASPTGSPSTALAMGSPSRAALTRTPSRASLTRTPSRA 563



 Score = 30.4 bits (67), Expect = 3.3
 Identities = 38/139 (27%), Positives = 50/139 (35%), Gaps = 28/139 (20%)

Query: 14  SKNSSTQDPSQPNSTKNQSL-------PKASPVTTSPTAATTQNP-------VLSKLLMA 59
           S+ S T  PS  + T   S        P+ASP  T  TA+ T+ P       +LS+  + 
Sbjct: 363 SRASPTGSPSTASLTGLSSTASPTGTPPRASPTGTPSTASLTRKPPRASPTGMLSRTSIT 422

Query: 60  DQDSPLDLTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQGNGRP-GRPSQ 118
             DS    T    ++ P          T   P A  T        + TQ    P G PS 
Sbjct: 423 KMDSTASPTRTPPRASP----------TGTPPRASPTGTPSRASPTGTQSTASPTGSPST 472

Query: 119 YRPDG---LRSGDGVPPRS 134
             P G     S  G P R+
Sbjct: 473 ASPTGSPSTASPTGSPSRA 491



 Score = 29.3 bits (64), Expect = 7.3
 Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 14/112 (12%)

Query: 14  SKNSSTQDPSQPNSTKNQS-------LPKASPVTTSPTAATTQNPVLSKLLMADQDSPLD 66
           S+ S T  PS  + TK  S       L +ASP  T P A+ T +P  + L M    + L 
Sbjct: 189 SRTSPTGMPSTASLTKMDSTASITRTLSRASPTGTPPRASPTGSPPRASLSMMPSTALLI 248

Query: 67  LTVRKSQSEPSEQDGVLDLSTKKSPCAGSTSLSHSPGCSSTQG-NGRPGRPS 117
            T  +     +   G+L   T  +    + S++ +P   ST    G P R S
Sbjct: 249 RTPPR-----ASPTGMLS-RTSLTKMDSTASITRTPSRPSTASPTGTPSRAS 294


>gi|19913398 smoothelin isoform a [Homo sapiens]
          Length = 940

 Score = 33.9 bits (76), Expect = 0.30
 Identities = 40/152 (26%), Positives = 62/152 (40%), Gaps = 27/152 (17%)

Query: 34  PKASPVTTSP------TAATTQNPVLSKLLMADQDSPLDLTVRKSQSEPSEQDGVLDLST 87
           P + P TTSP      T  +T+  V++KLL   +++P   +  +  S+           T
Sbjct: 237 PPSPPKTTSPEPQESPTLPSTEGQVVNKLLSGPKETPAAQSPHRGPSD-----------T 285

Query: 88  KKSPCAGSTSLSHSPGCSSTQGNGRPGRPSQYRPD-GLRSGDGVPPRSLQDGTREGFGHS 146
           K++  AG      S    S      P +P+Q R    L SG   P    + G+     H 
Sbjct: 286 KRADVAGPRPCQRSLSVLS------PRQPAQNRESTPLASG---PSSFQRAGSVRDRVHK 336

Query: 147 TSLKVPLARSLQISEELLSRNQLSTAASLGPS 178
            +   P+A  LQ      + + L+ A  LGPS
Sbjct: 337 FTSDSPMAARLQDGTPQAALSPLTPARLLGPS 368


>gi|169234723 lin-54 homolog isoform b [Homo sapiens]
          Length = 528

 Score = 33.5 bits (75), Expect = 0.39
 Identities = 18/42 (42%), Positives = 23/42 (54%)

Query: 13  TSKNSSTQDPSQPNSTKNQSLPKASPVTTSPTAATTQNPVLS 54
           TS +SSTQ  SQ  ST  Q L +A PV  + T      P++S
Sbjct: 146 TSASSSTQPVSQNPSTNTQPLQQAKPVVVNTTPVRMSVPIVS 187


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.306    0.124    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,712,996
Number of Sequences: 37866
Number of extensions: 868923
Number of successful extensions: 4332
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 137
Number of HSP's that attempted gapping in prelim test: 4070
Number of HSP's gapped (non-prelim): 388
length of query: 433
length of database: 18,247,518
effective HSP length: 105
effective length of query: 328
effective length of database: 14,271,588
effective search space: 4681080864
effective search space used: 4681080864
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 63 (28.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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