Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 39930371
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|39930371 RAB39, member RAS oncogene family [Homo sapiens]
(217 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|39930371 RAB39, member RAS oncogene family [Homo sapiens] 446 e-126
gi|25188193 RAB39B, member RAS oncogene family [Homo sapiens] 348 2e-96
gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens] 182 2e-46
gi|21361884 RAB2B protein isoform 1 [Homo sapiens] 180 7e-46
gi|19923483 GTPase Rab14 [Homo sapiens] 174 5e-44
gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens] 169 2e-42
gi|16933567 mel transforming oncogene [Homo sapiens] 163 1e-40
gi|4506363 RAB13, member RAS oncogene family [Homo sapiens] 160 8e-40
gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene fa... 158 4e-39
gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens] 158 4e-39
gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens] 158 4e-39
gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo sap... 154 4e-38
gi|19923260 RAB4A, member RAS oncogene family [Homo sapiens] 153 1e-37
gi|21361418 RAB30, member RAS oncogene family [Homo sapiens] 153 1e-37
gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens] 151 4e-37
gi|82659107 ras-related GTP-binding protein 4b [Homo sapiens] 150 6e-37
gi|4758984 Ras-related protein Rab-11A [Homo sapiens] 150 1e-36
gi|50234889 RAB43 protein [Homo sapiens] 149 2e-36
gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens] 149 2e-36
gi|46361978 RAB26, member RAS oncogene family [Homo sapiens] 148 3e-36
gi|4506367 RAB3A, member RAS oncogene family [Homo sapiens] 145 2e-35
gi|239915976 RAB19, member RAS oncogene family [Homo sapiens] 142 2e-34
gi|28376635 RAB37, member RAS oncogene family isoform 3 [Homo sa... 142 2e-34
gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens] 140 6e-34
gi|54859685 RAB37, member RAS oncogene family isoform 2 [Homo sa... 140 8e-34
gi|13786129 RAB33B, member RAS oncogene family [Homo sapiens] 139 1e-33
gi|254281345 RAB2B protein isoform 2 [Homo sapiens] 139 2e-33
gi|34485711 Ras-related protein Rab-27A [Homo sapiens] 139 2e-33
gi|34485709 Ras-related protein Rab-27A [Homo sapiens] 139 2e-33
gi|34485706 Ras-related protein Rab-27A [Homo sapiens] 139 2e-33
>gi|39930371 RAB39, member RAS oncogene family [Homo sapiens]
Length = 217
Score = 446 bits (1148), Expect = e-126
Identities = 217/217 (100%), Positives = 217/217 (100%)
Query: 1 METIWIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEPGK 60
METIWIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEPGK
Sbjct: 1 METIWIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEPGK 60
Query: 61 RIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQPFRI 120
RIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQPFRI
Sbjct: 61 RIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQPFRI 120
Query: 121 VFLLVGHKCDLASQRQVTREEAEKLSADCGMKYIETSAKDATNVEESFTILTRDIYELIK 180
VFLLVGHKCDLASQRQVTREEAEKLSADCGMKYIETSAKDATNVEESFTILTRDIYELIK
Sbjct: 121 VFLLVGHKCDLASQRQVTREEAEKLSADCGMKYIETSAKDATNVEESFTILTRDIYELIK 180
Query: 181 KGEICIQDGWEGVKSGFVPNTVHSSEEAVKPRKECFC 217
KGEICIQDGWEGVKSGFVPNTVHSSEEAVKPRKECFC
Sbjct: 181 KGEICIQDGWEGVKSGFVPNTVHSSEEAVKPRKECFC 217
>gi|25188193 RAB39B, member RAS oncogene family [Homo sapiens]
Length = 213
Score = 348 bits (893), Expect = 2e-96
Identities = 167/217 (76%), Positives = 192/217 (88%), Gaps = 4/217 (1%)
Query: 1 METIWIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEPGK 60
ME IW+YQFRLIVIGDSTVGKSCL+ RFT+GRF + DPTVGVDFFSRL+EIEPGK
Sbjct: 1 MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRF----AQVSDPTVGVDFFSRLVEIEPGK 56
Query: 61 RIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQPFRI 120
RIKLQ+WDTAGQERFRSITR+YYRNSVGG L+FDITNRRSF++V +WLEE K++VQP++I
Sbjct: 57 RIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQI 116
Query: 121 VFLLVGHKCDLASQRQVTREEAEKLSADCGMKYIETSAKDATNVEESFTILTRDIYELIK 180
VF+LVGHKCDL +QRQVTR EAEKL+A GMKYIETSA+DA NVE++FT LTRDIYEL+K
Sbjct: 117 VFVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIYELVK 176
Query: 181 KGEICIQDGWEGVKSGFVPNTVHSSEEAVKPRKECFC 217
+GEI IQ+GWEGVKSGFVPN VHSSEE VK + C C
Sbjct: 177 RGEITIQEGWEGVKSGFVPNVVHSSEEVVKSERRCLC 213
>gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens]
Length = 212
Score = 182 bits (462), Expect = 2e-46
Identities = 94/192 (48%), Positives = 134/192 (69%), Gaps = 6/192 (3%)
Query: 5 WIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEPGKRIKL 64
+ Y F+ I+IGD+ VGKSCLL +FT RF P D T+GV+F +R++ I+ GK+IKL
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRF----QPVHDLTIGVEFGARMITID-GKQIKL 57
Query: 65 QLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQPFRIVFLL 124
Q+WDTAGQE FRSITRSYYR + G LV+DIT R +F H+ WLE+A+ + +V +L
Sbjct: 58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNS-NMVIML 116
Query: 125 VGHKCDLASQRQVTREEAEKLSADCGMKYIETSAKDATNVEESFTILTRDIYELIKKGEI 184
+G+K DL S+R+V +EE E + + G+ ++ETSAK A+NVEE+F ++IYE I++G
Sbjct: 117 IGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVF 176
Query: 185 CIQDGWEGVKSG 196
I + G+K G
Sbjct: 177 DINNEANGIKIG 188
>gi|21361884 RAB2B protein isoform 1 [Homo sapiens]
Length = 216
Score = 180 bits (457), Expect = 7e-46
Identities = 93/192 (48%), Positives = 131/192 (68%), Gaps = 6/192 (3%)
Query: 5 WIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEPGKRIKL 64
+ Y F+ I+IGD+ VGKSCLL +FT RF P D T+GV+F +R++ I+ GK+IKL
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRF----QPVHDLTIGVEFGARMVNID-GKQIKL 57
Query: 65 QLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQPFRIVFLL 124
Q+WDTAGQE FRSITRSYYR + G LV+DIT R +F H+ WLE+A+ + +V +L
Sbjct: 58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQH-SSSNMVIML 116
Query: 125 VGHKCDLASQRQVTREEAEKLSADCGMKYIETSAKDATNVEESFTILTRDIYELIKKGEI 184
+G+K DL S+R V REE E + + G+ ++ETSAK A NVEE+F ++IY I++G
Sbjct: 117 IGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGLF 176
Query: 185 CIQDGWEGVKSG 196
+ + G+K G
Sbjct: 177 DVHNEANGIKIG 188
>gi|19923483 GTPase Rab14 [Homo sapiens]
Length = 215
Score = 174 bits (441), Expect = 5e-44
Identities = 89/212 (41%), Positives = 134/212 (63%), Gaps = 7/212 (3%)
Query: 7 YQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEPGKRIKLQL 66
Y F+ I+IGD VGKSCLLH+FT+ +F C T+GV+F +R++E+ G++IKLQ+
Sbjct: 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMA----DCPHTIGVEFGTRIIEVS-GQKIKLQI 64
Query: 67 WDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQPFRIVFLLVG 126
WDTAGQERFR++TRSYYR + G +V+DIT R ++ H+ WL +A+ P V +L+G
Sbjct: 65 WDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP-NTVIILIG 123
Query: 127 HKCDLASQRQVTREEAEKLSADCGMKYIETSAKDATNVEESFTILTRDIYELIKKGEICI 186
+K DL +QR VT EEA++ + + G+ ++E SAK NVE++F + IY+ I+ G + +
Sbjct: 124 NKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDL 183
Query: 187 QDGWEGVK-SGFVPNTVHSSEEAVKPRKECFC 217
GV+ P + E R+ C C
Sbjct: 184 NAAESGVQHKPSAPQGGRLTSEPQPQREGCGC 215
>gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens]
Length = 207
Score = 169 bits (428), Expect = 2e-42
Identities = 83/175 (47%), Positives = 126/175 (72%), Gaps = 6/175 (3%)
Query: 1 METIWIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEPGK 60
M + Y F+L++IGDS VGK+CLL RF++ F + T+G+DF R +E++ GK
Sbjct: 1 MAKTYDYLFKLLLIGDSGVGKTCLLFRFSEDAF----NTTFISTIGIDFKIRTIELD-GK 55
Query: 61 RIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQPFRI 120
+IKLQ+WDTAGQERFR+IT +YYR ++G LV+DITN +SF+++K+W+ + + +
Sbjct: 56 KIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASS-DV 114
Query: 121 VFLLVGHKCDLASQRQVTREEAEKLSADCGMKYIETSAKDATNVEESFTILTRDI 175
+++G+KCD+ +RQV++E EKL+ D G+K++ETSAK + NVEE+F L RDI
Sbjct: 115 ERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDI 169
>gi|16933567 mel transforming oncogene [Homo sapiens]
Length = 207
Score = 163 bits (412), Expect = 1e-40
Identities = 81/175 (46%), Positives = 124/175 (70%), Gaps = 6/175 (3%)
Query: 1 METIWIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEPGK 60
M + Y F+L++IGDS VGK+C+L RF++ F + T+G+DF R +E++ GK
Sbjct: 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAF----NSTFISTIGIDFKIRTIELD-GK 55
Query: 61 RIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQPFRI 120
RIKLQ+WDTAGQERFR+IT +YYR ++G LV+DITN +SF+++++W+ + + +
Sbjct: 56 RIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA-DV 114
Query: 121 VFLLVGHKCDLASQRQVTREEAEKLSADCGMKYIETSAKDATNVEESFTILTRDI 175
+++G+KCD+ +RQV++E EKL+ D G+K++ETSAK NVE +F L RDI
Sbjct: 115 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169
>gi|4506363 RAB13, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 160 bits (405), Expect = 8e-40
Identities = 82/182 (45%), Positives = 131/182 (71%), Gaps = 8/182 (4%)
Query: 1 METIWIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEPGK 60
M + + F+L++IGDS VGK+CL+ RF + F + T+G+DF R ++IE GK
Sbjct: 1 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNF----NNTYISTIGIDFKIRTVDIE-GK 55
Query: 61 RIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQPFRI 120
+IKLQ+WDTAGQERF++IT +YYR ++G LV+DIT+ +SFE++++W++ K +
Sbjct: 56 KIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASA-GV 114
Query: 121 VFLLVGHKCDLASQRQVTREEAEKLSADCGMKYIETSAKDATNVEESFTILTRDIYELIK 180
LL+G+KCD+ ++R+V +E+A+KL+ + G+++ ETSAK + NV+E+F+ L RDI L+K
Sbjct: 115 ERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI--LLK 172
Query: 181 KG 182
G
Sbjct: 173 SG 174
>gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene
family [Homo sapiens]
Length = 327
Score = 158 bits (399), Expect = 4e-39
Identities = 81/182 (44%), Positives = 130/182 (71%), Gaps = 8/182 (4%)
Query: 1 METIWIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEPGK 60
M + + F+L++IGDS VGK+CL+ RF + F + T+G+DF R ++IE GK
Sbjct: 125 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNF----NNTYISTIGIDFKIRTVDIE-GK 179
Query: 61 RIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQPFRI 120
+IKLQ+WDTAGQERF++IT +YYR ++G L +DIT+ +SFE++++W++ M +
Sbjct: 180 KIKLQVWDTAGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSI-MENASAGV 238
Query: 121 VFLLVGHKCDLASQRQVTREEAEKLSADCGMKYIETSAKDATNVEESFTILTRDIYELIK 180
LL+G+KCD+ ++R+V +E+A+KL+ + G+++ ETSAK + NV+E+F+ L RDI L+K
Sbjct: 239 EHLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI--LLK 296
Query: 181 KG 182
G
Sbjct: 297 SG 298
>gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 158 bits (399), Expect = 4e-39
Identities = 81/182 (44%), Positives = 130/182 (71%), Gaps = 8/182 (4%)
Query: 1 METIWIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEPGK 60
M + + F+L++IGDS VGK+CL+ RF + F + T+G+DF R ++IE GK
Sbjct: 125 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNF----NNTYISTIGIDFKIRTVDIE-GK 179
Query: 61 RIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQPFRI 120
+IKLQ+WDTAGQERF++IT +YYR ++G L +DIT+ +SFE++++W++ M +
Sbjct: 180 KIKLQVWDTAGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSI-MENASAGV 238
Query: 121 VFLLVGHKCDLASQRQVTREEAEKLSADCGMKYIETSAKDATNVEESFTILTRDIYELIK 180
LL+G+KCD+ ++R+V +E+A+KL+ + G+++ ETSAK + NV+E+F+ L RDI L+K
Sbjct: 239 EHLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI--LLK 296
Query: 181 KG 182
G
Sbjct: 297 SG 298
>gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 158 bits (399), Expect = 4e-39
Identities = 81/182 (44%), Positives = 130/182 (71%), Gaps = 8/182 (4%)
Query: 1 METIWIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEPGK 60
M + + F+L++IGDS VGK+CL+ RF + F + T+G+DF R ++IE GK
Sbjct: 125 MAKAYDHLFKLLLIGDSGVGKTCLIIRFAEDNF----NNTYISTIGIDFKIRTVDIE-GK 179
Query: 61 RIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQPFRI 120
+IKLQ+WDTAGQERF++IT +YYR ++G L +DIT+ +SFE++++W++ M +
Sbjct: 180 KIKLQVWDTAGQERFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSI-MENASAGV 238
Query: 121 VFLLVGHKCDLASQRQVTREEAEKLSADCGMKYIETSAKDATNVEESFTILTRDIYELIK 180
LL+G+KCD+ ++R+V +E+A+KL+ + G+++ ETSAK + NV+E+F+ L RDI L+K
Sbjct: 239 EHLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI--LLK 296
Query: 181 KG 182
G
Sbjct: 297 SG 298
>gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo
sapiens]
Length = 205
Score = 154 bits (390), Expect = 4e-38
Identities = 82/176 (46%), Positives = 119/176 (67%), Gaps = 6/176 (3%)
Query: 7 YQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEPGKRIKLQL 66
Y F+L++IGDS VGKSCLL RF + + + T+GVDF R +E++ GK IKLQ+
Sbjct: 10 YLFKLLLIGDSGVGKSCLLLRFADDTY----TESYISTIGVDFKIRTIELD-GKTIKLQI 64
Query: 67 WDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQPFRIVFLLVG 126
WDTAGQERFR+IT SYYR + G +V+D+T++ SF +VK WL+E Y + LLVG
Sbjct: 65 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE-NVNKLLVG 123
Query: 127 HKCDLASQRQVTREEAEKLSADCGMKYIETSAKDATNVEESFTILTRDIYELIKKG 182
+KCDL +++ V A++ + G+ ++ETSAK+ATNVE+SF + +I + + G
Sbjct: 124 NKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPG 179
>gi|19923260 RAB4A, member RAS oncogene family [Homo sapiens]
Length = 218
Score = 153 bits (386), Expect = 1e-37
Identities = 86/219 (39%), Positives = 132/219 (60%), Gaps = 8/219 (3%)
Query: 1 METIWIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEPGK 60
M + + F+ +VIG++ GKSCLLH+F + +F + T+GV+F S+++ + GK
Sbjct: 6 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKF----KDDSNHTIGVEFGSKIINVG-GK 60
Query: 61 RIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQPFRI 120
+KLQ+WDTAGQERFRS+TRSYYR + G LV+DIT+R ++ + +WL +A+M I
Sbjct: 61 YVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQ-NI 119
Query: 121 VFLLVGHKCDLASQRQVTREEAEKLSADCGMKYIETSAKDATNVEESFTILTRDIYELIK 180
V +L G+K DL + R+VT EA + + + + ++ETSA NVEE+F R I I+
Sbjct: 120 VIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIE 179
Query: 181 KGEICIQDGWEGVKSGFVP-NTVHSSEEAVKPR-KECFC 217
GE+ + G++ G + S A P +EC C
Sbjct: 180 SGELDPERMGSGIQYGDAALRQLRSPRRAQAPNAQECGC 218
>gi|21361418 RAB30, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 153 bits (386), Expect = 1e-37
Identities = 77/162 (47%), Positives = 115/162 (70%), Gaps = 6/162 (3%)
Query: 7 YQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEPGKRIKLQL 66
+ F++++IG++ VGK+CL+ RFTQG FP P T+GVDF + +EI G+++KLQ+
Sbjct: 8 FLFKIVLIGNAGVGKTCLVRRFTQGLFP----PGQGATIGVDFMIKTVEIN-GEKVKLQI 62
Query: 67 WDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQPFRIVFLLVG 126
WDTAGQERFRSIT+SYYR++ L +DIT SF + +WL E + Y +++ +LVG
Sbjct: 63 WDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASN-KVITVLVG 121
Query: 127 HKCDLASQRQVTREEAEKLSADCGMKYIETSAKDATNVEESF 168
+K DLA +R+V+++ AE+ S M Y+ETSAK++ NVE+ F
Sbjct: 122 NKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF 163
>gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens]
Length = 218
Score = 151 bits (382), Expect = 4e-37
Identities = 87/212 (41%), Positives = 132/212 (62%), Gaps = 7/212 (3%)
Query: 7 YQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEPGKRIKLQL 66
Y F++++IGDS VGKS LL RFT+ F L S + T+GV+F +R ++++ GK IK Q+
Sbjct: 10 YLFKVVLIGDSGVGKSNLLSRFTRNEF-NLESKS---TIGVEFATRSIQVD-GKTIKAQI 64
Query: 67 WDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQPFRIVFLLVG 126
WDTAGQER+R+IT +YYR +VG LV+DI ++E+V+ WL+E + + IV +LVG
Sbjct: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS-NIVIMLVG 123
Query: 127 HKCDLASQRQVTREEAEKLSADCGMKYIETSAKDATNVEESFTILTRDIYELIKKGEICI 186
+K DL R V +EA + + +IETSA D+TNVEE+F + +IY ++ + +I
Sbjct: 124 NKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIAD 183
Query: 187 QDGW-EGVKSGFVPNTVHSSEEAVKPRKECFC 217
+ E + V +V + + KP K C
Sbjct: 184 RAAHDESPGNNVVDISVPPTTDGQKPNKLQCC 215
>gi|82659107 ras-related GTP-binding protein 4b [Homo sapiens]
Length = 213
Score = 150 bits (380), Expect = 6e-37
Identities = 81/196 (41%), Positives = 121/196 (61%), Gaps = 6/196 (3%)
Query: 1 METIWIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEPGK 60
M + + F+ +VIG + GKSCLLH+F + +F + T+GV+F SR++ + GK
Sbjct: 1 MAETYDFLFKFLVIGSAGTGKSCLLHQFIENKF----KQDSNHTIGVEFGSRVVNVG-GK 55
Query: 61 RIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQPFRI 120
+KLQ+WDTAGQERFRS+TRSYYR + G LV+DIT+R ++ + WL +A+ P I
Sbjct: 56 TVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASP-NI 114
Query: 121 VFLLVGHKCDLASQRQVTREEAEKLSADCGMKYIETSAKDATNVEESFTILTRDIYELIK 180
V +L G+K DL +R+VT EA + + + + ++ETSA NVEE+F R I I
Sbjct: 115 VVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKID 174
Query: 181 KGEICIQDGWEGVKSG 196
GE+ + G++ G
Sbjct: 175 SGELDPERMGSGIQYG 190
>gi|4758984 Ras-related protein Rab-11A [Homo sapiens]
Length = 216
Score = 150 bits (378), Expect = 1e-36
Identities = 79/178 (44%), Positives = 120/178 (67%), Gaps = 6/178 (3%)
Query: 7 YQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEPGKRIKLQL 66
Y F++++IGDS VGKS LL RFT+ F L S + T+GV+F +R ++++ GK IK Q+
Sbjct: 10 YLFKVVLIGDSGVGKSNLLSRFTRNEF-NLESKS---TIGVEFATRSIQVD-GKTIKAQI 64
Query: 67 WDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQPFRIVFLLVG 126
WDTAGQER+R+IT +YYR +VG LV+DI ++E+V+ WL+E + + IV +LVG
Sbjct: 65 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS-NIVIMLVG 123
Query: 127 HKCDLASQRQVTREEAEKLSADCGMKYIETSAKDATNVEESFTILTRDIYELIKKGEI 184
+K DL R V +EA + G+ +IETSA D+TNVE +F + +IY ++ + ++
Sbjct: 124 NKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQM 181
>gi|50234889 RAB43 protein [Homo sapiens]
Length = 212
Score = 149 bits (376), Expect = 2e-36
Identities = 80/163 (49%), Positives = 114/163 (69%), Gaps = 7/163 (4%)
Query: 7 YQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEPGKRIKLQL 66
+ F+L+++GD++VGK+C++ RF G F S T+GVDF + LEI+ GKR+KLQ+
Sbjct: 17 FLFKLVLVGDASVGKTCVVQRFKTGAF----SERQGSTIGVDFTMKTLEIQ-GKRVKLQI 71
Query: 67 WDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQPFRIVFLLVG 126
WDTAGQERFR+IT+SYYR++ G L +DIT R SF V W+E+ + Y IV LL+G
Sbjct: 72 WDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGS-NIVQLLIG 130
Query: 127 HKCDLASQRQVTREEAEKLSADCG-MKYIETSAKDATNVEESF 168
+K DL+ R+V+ EA+ L+ + IETSAKD++NVEE+F
Sbjct: 131 NKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF 173
>gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 149 bits (375), Expect = 2e-36
Identities = 79/176 (44%), Positives = 118/176 (67%), Gaps = 6/176 (3%)
Query: 7 YQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEPGKRIKLQL 66
Y F+L++IGDS VGKSCLL RF + + + T+GVDF R +E++ GK IKLQ+
Sbjct: 7 YLFKLLLIGDSGVGKSCLLLRFADDTY----TESYISTIGVDFKIRTIELD-GKTIKLQI 61
Query: 67 WDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQPFRIVFLLVG 126
WDTAGQERFR+IT SYYR + G +V+D+T++ S+ +VK WL+E Y + LLVG
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASE-NVNKLLVG 120
Query: 127 HKCDLASQRQVTREEAEKLSADCGMKYIETSAKDATNVEESFTILTRDIYELIKKG 182
+K DL +++ V A++ + G+ ++ETSAK+ATNVE++F + +I + + G
Sbjct: 121 NKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPG 176
>gi|46361978 RAB26, member RAS oncogene family [Homo sapiens]
Length = 256
Score = 148 bits (374), Expect = 3e-36
Identities = 72/167 (43%), Positives = 118/167 (70%), Gaps = 5/167 (2%)
Query: 9 FRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEPGKRIKLQLWD 68
F+++++GDS VGK+CLL RF G F + TVG+DF +++L+++ G ++KLQ+WD
Sbjct: 64 FKVMLVGDSGVGKTCLLVRFKDGAF---LAGTFISTVGIDFRNKVLDVD-GVKVKLQMWD 119
Query: 69 TAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQPFRIVFLLVGHK 128
TAGQERFRS+T +YYR++ L++D+TN+ SF++++ WL E Y Q + +L+G+K
Sbjct: 120 TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNK 178
Query: 129 CDLASQRQVTREEAEKLSADCGMKYIETSAKDATNVEESFTILTRDI 175
D A +R V RE+ EKL+ + G+ ++ETSAK NV+ +FT + +++
Sbjct: 179 VDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 225
>gi|4506367 RAB3A, member RAS oncogene family [Homo sapiens]
Length = 220
Score = 145 bits (367), Expect = 2e-35
Identities = 83/211 (39%), Positives = 122/211 (57%), Gaps = 11/211 (5%)
Query: 7 YQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEPGKRIKLQL 66
Y F++++IG+S+VGK+ L R+ F +PA TVG+DF + + KRIKLQ+
Sbjct: 21 YMFKILIIGNSSVGKTSFLFRYADDSF----TPAFVSTVGIDFKVKTI-YRNDKRIKLQI 75
Query: 67 WDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQPFRIVFLLVG 126
WDTAGQER+R+IT +YYR ++G L++DITN SF V+DW + K Y V LLVG
Sbjct: 76 WDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQV-LLVG 134
Query: 127 HKCDLASQRQVTREEAEKLSADCGMKYIETSAKDATNVEESFTILTRDIYELIKKGEICI 186
+KCD+ +R V+ E +L+ G ++ E SAKD NV+++F L I E + +
Sbjct: 135 NKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTA 194
Query: 187 QDGWEGVKSGFVPNTVHSSEEAVKPRKECFC 217
G K G S++ V P ++C C
Sbjct: 195 DPAVTGAKQG-----PQLSDQQVPPHQDCAC 220
>gi|239915976 RAB19, member RAS oncogene family [Homo sapiens]
Length = 217
Score = 142 bits (359), Expect = 2e-34
Identities = 71/170 (41%), Positives = 114/170 (67%), Gaps = 7/170 (4%)
Query: 7 YQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEPGKRIKLQL 66
Y F++I+IGDS VGK+C++ F G + + T+GVDF R L+I+ GK++K+Q+
Sbjct: 16 YLFKIILIGDSNVGKTCVVQHFKSGVYTETQQN----TIGVDFTVRSLDID-GKKVKMQV 70
Query: 67 WDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQPFRIVFLLVG 126
WDTAGQERFR+IT+SYYR++ + +D+T R +FE + W+ E + Y +V +L+G
Sbjct: 71 WDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESIPHWIHEIEKY-GAANVVIMLIG 129
Query: 127 HKCDLASQRQVTREEAEKLSADCG-MKYIETSAKDATNVEESFTILTRDI 175
+KCDL +R V E+A L+ G + +ETSAK++ N+EE F ++ +++
Sbjct: 130 NKCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIEEVFVLMAKEL 179
>gi|28376635 RAB37, member RAS oncogene family isoform 3 [Homo
sapiens]
Length = 216
Score = 142 bits (358), Expect = 2e-34
Identities = 72/167 (43%), Positives = 117/167 (70%), Gaps = 7/167 (4%)
Query: 10 RLIVIGDSTVGKSCLLHRFTQGRF-PGLRSPACDPTVGVDFFSRLLEIEPGKRIKLQLWD 68
+ I++GDS VGK+ LL +F QG+F PG S TVG+ F ++++ ++ G R+KLQ+WD
Sbjct: 24 KTILVGDSGVGKTSLLVQFDQGKFIPGSFSA----TVGIGFTNKVVTVD-GVRVKLQIWD 78
Query: 69 TAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQPFRIVFLLVGHK 128
TAGQERFRS+T +YYR++ L++DITN+ SF++++ WL E Y Q +V +L+G+K
Sbjct: 79 TAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQR-DVVIMLLGNK 137
Query: 129 CDLASQRQVTREEAEKLSADCGMKYIETSAKDATNVEESFTILTRDI 175
D++S+R + E+ E L+ + G+ ++ETSAK NVE +F + +++
Sbjct: 138 ADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNVELAFLAIAKEL 184
>gi|33695095 ras-related GTP-binding protein RAB10 [Homo sapiens]
Length = 200
Score = 140 bits (354), Expect = 6e-34
Identities = 71/167 (42%), Positives = 112/167 (67%), Gaps = 6/167 (3%)
Query: 9 FRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEPGKRIKLQLWD 68
F+L++IGDS VGK+C+L RF+ F + T+G+DF + +E++ GK+IKLQ+WD
Sbjct: 10 FKLLLIGDSGVGKTCVLFRFSDDAF----NTTFISTIGIDFKIKTVELQ-GKKIKLQIWD 64
Query: 69 TAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQPFRIVFLLVGHK 128
TAGQERF +IT SYYR ++G LV+DITN +SFE++ WL + + +L+G+K
Sbjct: 65 TAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANE-DVERMLLGNK 123
Query: 129 CDLASQRQVTREEAEKLSADCGMKYIETSAKDATNVEESFTILTRDI 175
CD+ +R V + + +++ + G+++ ETSAK N+E++F L DI
Sbjct: 124 CDMDDKRVVPKGKGGQIAREHGIRFFETSAKANINIEKAFLTLAEDI 170
>gi|54859685 RAB37, member RAS oncogene family isoform 2 [Homo
sapiens]
Length = 223
Score = 140 bits (353), Expect = 8e-34
Identities = 68/166 (40%), Positives = 115/166 (69%), Gaps = 5/166 (3%)
Query: 10 RLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEPGKRIKLQLWDT 69
+++++GD+ VGK+C L +F G F S TVG+DF ++++ ++ G R+KLQ+WDT
Sbjct: 31 KVMLLGDTGVGKTCFLIQFKDGAF---LSGTFIATVGIDFRNKVVTVD-GVRVKLQIWDT 86
Query: 70 AGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQPFRIVFLLVGHKC 129
AGQERFRS+T +YYR++ L++DITN+ SF++++ WL E Y Q +V +L+G+K
Sbjct: 87 AGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQR-DVVIMLLGNKA 145
Query: 130 DLASQRQVTREEAEKLSADCGMKYIETSAKDATNVEESFTILTRDI 175
D++S+R + E+ E L+ + G+ ++ETSAK NVE +F + +++
Sbjct: 146 DMSSERVIRSEDGETLAREYGVPFLETSAKTGMNVELAFLAIAKEL 191
>gi|13786129 RAB33B, member RAS oncogene family [Homo sapiens]
Length = 229
Score = 139 bits (351), Expect = 1e-33
Identities = 81/171 (47%), Positives = 106/171 (61%), Gaps = 9/171 (5%)
Query: 9 FRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEPGKRIKLQLWD 68
F++IVIGDS VGK+CL +RF GRFP + T+GVDF R +EI+ G+RIK+QLWD
Sbjct: 34 FKIIVIGDSNVGKTCLTYRFCAGRFPD----RTEATIGVDFRERAVEID-GERIKIQLWD 88
Query: 69 TAGQERFR-SITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQPFRIVFLLVGH 127
TAGQERFR S+ + YYRN V+D+TN SF + W+EE K ++ I +LVG+
Sbjct: 89 TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEECKQHLLANDIPRILVGN 148
Query: 128 KCDLASQRQVTREEAEKLSADCGMKYIETSAK---DATNVEESFTILTRDI 175
KCDL S QV + A+K + M ETSAK D +VE F L +
Sbjct: 149 KCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 199
>gi|254281345 RAB2B protein isoform 2 [Homo sapiens]
Length = 170
Score = 139 bits (350), Expect = 2e-33
Identities = 68/138 (49%), Positives = 95/138 (68%), Gaps = 1/138 (0%)
Query: 59 GKRIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQPF 118
GK+IKLQ+WDTAGQE FRSITRSYYR + G LV+DIT R +F H+ WLE+A+ +
Sbjct: 6 GKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQH-SSS 64
Query: 119 RIVFLLVGHKCDLASQRQVTREEAEKLSADCGMKYIETSAKDATNVEESFTILTRDIYEL 178
+V +L+G+K DL S+R V REE E + + G+ ++ETSAK A NVEE+F ++IY
Sbjct: 65 NMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRK 124
Query: 179 IKKGEICIQDGWEGVKSG 196
I++G + + G+K G
Sbjct: 125 IQQGLFDVHNEANGIKIG 142
>gi|34485711 Ras-related protein Rab-27A [Homo sapiens]
Length = 221
Score = 139 bits (350), Expect = 2e-33
Identities = 79/223 (35%), Positives = 129/223 (57%), Gaps = 21/223 (9%)
Query: 7 YQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEP-------- 58
Y + + +GDS VGK+ +L+++T G+F + TVG+DF + +
Sbjct: 8 YLIKFLALGDSGVGKTSVLYQYTDGKF----NSKFITTVGIDFREKRVVYRASGPDGATG 63
Query: 59 -GKRIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQP 117
G+RI LQLWDTAGQERFRS+T +++R+++G L+FD+TN +SF +V++W+ + +M+
Sbjct: 64 RGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYC 123
Query: 118 FRIVFLLVGHKCDLASQRQVTREEAEKLSADCGMKYIETSAKDATNVEESFTILTRDIYE 177
+L G+K DL QR V EEA L+ G+ Y ETSA + TN+ ++ +L +
Sbjct: 124 ENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEML---LDL 180
Query: 178 LIKKGEICIQDGWEGVKSGFVPNTVHSSEEAVKPRKE---CFC 217
++K+ E C+ W + G V + H+S + + KE C C
Sbjct: 181 IMKRMERCVDKSW--IPEGVVRSNGHASTDQLSEEKEKGACGC 221
>gi|34485709 Ras-related protein Rab-27A [Homo sapiens]
Length = 221
Score = 139 bits (350), Expect = 2e-33
Identities = 79/223 (35%), Positives = 129/223 (57%), Gaps = 21/223 (9%)
Query: 7 YQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEP-------- 58
Y + + +GDS VGK+ +L+++T G+F + TVG+DF + +
Sbjct: 8 YLIKFLALGDSGVGKTSVLYQYTDGKF----NSKFITTVGIDFREKRVVYRASGPDGATG 63
Query: 59 -GKRIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQP 117
G+RI LQLWDTAGQERFRS+T +++R+++G L+FD+TN +SF +V++W+ + +M+
Sbjct: 64 RGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYC 123
Query: 118 FRIVFLLVGHKCDLASQRQVTREEAEKLSADCGMKYIETSAKDATNVEESFTILTRDIYE 177
+L G+K DL QR V EEA L+ G+ Y ETSA + TN+ ++ +L +
Sbjct: 124 ENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEML---LDL 180
Query: 178 LIKKGEICIQDGWEGVKSGFVPNTVHSSEEAVKPRKE---CFC 217
++K+ E C+ W + G V + H+S + + KE C C
Sbjct: 181 IMKRMERCVDKSW--IPEGVVRSNGHASTDQLSEEKEKGACGC 221
>gi|34485706 Ras-related protein Rab-27A [Homo sapiens]
Length = 221
Score = 139 bits (350), Expect = 2e-33
Identities = 79/223 (35%), Positives = 129/223 (57%), Gaps = 21/223 (9%)
Query: 7 YQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEP-------- 58
Y + + +GDS VGK+ +L+++T G+F + TVG+DF + +
Sbjct: 8 YLIKFLALGDSGVGKTSVLYQYTDGKF----NSKFITTVGIDFREKRVVYRASGPDGATG 63
Query: 59 -GKRIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQP 117
G+RI LQLWDTAGQERFRS+T +++R+++G L+FD+TN +SF +V++W+ + +M+
Sbjct: 64 RGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYC 123
Query: 118 FRIVFLLVGHKCDLASQRQVTREEAEKLSADCGMKYIETSAKDATNVEESFTILTRDIYE 177
+L G+K DL QR V EEA L+ G+ Y ETSA + TN+ ++ +L +
Sbjct: 124 ENPDIVLCGNKSDLEDQRVVKEEEAIALAEKYGIPYFETSAANGTNISQAIEML---LDL 180
Query: 178 LIKKGEICIQDGWEGVKSGFVPNTVHSSEEAVKPRKE---CFC 217
++K+ E C+ W + G V + H+S + + KE C C
Sbjct: 181 IMKRMERCVDKSW--IPEGVVRSNGHASTDQLSEEKEKGACGC 221
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.139 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,872,587
Number of Sequences: 37866
Number of extensions: 312833
Number of successful extensions: 1321
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 830
Number of HSP's gapped (non-prelim): 265
length of query: 217
length of database: 18,247,518
effective HSP length: 98
effective length of query: 119
effective length of database: 14,536,650
effective search space: 1729861350
effective search space used: 1729861350
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.