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Search of human proteins with 38708321
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38708321 INO80 complex homolog 1 [Homo sapiens]
(1556 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38708321 INO80 complex homolog 1 [Homo sapiens] 3095 0.0
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 312 1e-84
gi|164419749 SWI/SNF-related matrix-associated actin-dependent r... 265 2e-70
gi|21071044 SWI/SNF-related matrix-associated actin-dependent re... 265 2e-70
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 259 1e-68
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 259 1e-68
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 259 1e-68
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 259 1e-68
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 259 1e-68
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 259 1e-68
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 259 1e-68
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 258 2e-68
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 258 2e-68
gi|21071058 SWI/SNF-related matrix-associated actin-dependent re... 249 1e-65
gi|21914927 helicase, lymphoid-specific [Homo sapiens] 228 5e-59
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 228 5e-59
gi|190358536 SWI/SNF-related, matrix-associated actin-dependent ... 226 1e-58
gi|190358532 SWI/SNF-related, matrix-associated actin-dependent ... 226 1e-58
gi|190358534 SWI/SNF-related, matrix-associated actin-dependent ... 224 5e-58
gi|56549696 E1A binding protein p400 [Homo sapiens] 221 4e-57
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa... 219 1e-56
gi|148612870 chromodomain helicase DNA binding protein 1-like [H... 211 6e-54
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 203 1e-51
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 203 1e-51
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 203 1e-51
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa... 201 5e-51
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 196 2e-49
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 196 2e-49
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa... 195 3e-49
gi|114326455 chromodomain helicase DNA binding protein 8 [Homo s... 193 1e-48
>gi|38708321 INO80 complex homolog 1 [Homo sapiens]
Length = 1556
Score = 3095 bits (8024), Expect = 0.0
Identities = 1556/1556 (100%), Positives = 1556/1556 (100%)
Query: 1 MASELGARDDGGCTELAKPLYLQYLERALRLDHFLRQTSAIFNRNISSDDSEDGLDDSNP 60
MASELGARDDGGCTELAKPLYLQYLERALRLDHFLRQTSAIFNRNISSDDSEDGLDDSNP
Sbjct: 1 MASELGARDDGGCTELAKPLYLQYLERALRLDHFLRQTSAIFNRNISSDDSEDGLDDSNP 60
Query: 61 LLPQSGDPLIQVKEEPPNSLLGETSGAGSSGMLNTYSLNGVLQSESKCDKGNLYNFSKLK 120
LLPQSGDPLIQVKEEPPNSLLGETSGAGSSGMLNTYSLNGVLQSESKCDKGNLYNFSKLK
Sbjct: 61 LLPQSGDPLIQVKEEPPNSLLGETSGAGSSGMLNTYSLNGVLQSESKCDKGNLYNFSKLK 120
Query: 121 KSRKWLKSILLSDESSEADSQSEDDDEEELNLSREELHNMLRLHKYKKLHQNKYSKDKEL 180
KSRKWLKSILLSDESSEADSQSEDDDEEELNLSREELHNMLRLHKYKKLHQNKYSKDKEL
Sbjct: 121 KSRKWLKSILLSDESSEADSQSEDDDEEELNLSREELHNMLRLHKYKKLHQNKYSKDKEL 180
Query: 181 QQYQYYSAGLLSTYDPFYEQQRHLLGPKKKKFKEEKKLKAKLKKVKKKRRRDEELSSEES 240
QQYQYYSAGLLSTYDPFYEQQRHLLGPKKKKFKEEKKLKAKLKKVKKKRRRDEELSSEES
Sbjct: 181 QQYQYYSAGLLSTYDPFYEQQRHLLGPKKKKFKEEKKLKAKLKKVKKKRRRDEELSSEES 240
Query: 241 PRRHHHQTKVFAKFSHDAPPPGTKKKHLSIEQLNARRRKVWLSIVKKELPKANKQKASAR 300
PRRHHHQTKVFAKFSHDAPPPGTKKKHLSIEQLNARRRKVWLSIVKKELPKANKQKASAR
Sbjct: 241 PRRHHHQTKVFAKFSHDAPPPGTKKKHLSIEQLNARRRKVWLSIVKKELPKANKQKASAR 300
Query: 301 NLFLTNSRKLAHQCMKEVRRAALQAQKNCKETLPRARRLTKEMLLYWKKYEKVEKEHRKR 360
NLFLTNSRKLAHQCMKEVRRAALQAQKNCKETLPRARRLTKEMLLYWKKYEKVEKEHRKR
Sbjct: 301 NLFLTNSRKLAHQCMKEVRRAALQAQKNCKETLPRARRLTKEMLLYWKKYEKVEKEHRKR 360
Query: 361 AEKEALEQRKLDEEMREAKRQQRKLNFLITQTELYAHFMSRKRDMGHDGIQEEILRKLED 420
AEKEALEQRKLDEEMREAKRQQRKLNFLITQTELYAHFMSRKRDMGHDGIQEEILRKLED
Sbjct: 361 AEKEALEQRKLDEEMREAKRQQRKLNFLITQTELYAHFMSRKRDMGHDGIQEEILRKLED 420
Query: 421 SSTQRQIDIGGGVVVNITQEDYDSNHFKAQALKNAENAYHIHQARTRSFDEDAKESRAAA 480
SSTQRQIDIGGGVVVNITQEDYDSNHFKAQALKNAENAYHIHQARTRSFDEDAKESRAAA
Sbjct: 421 SSTQRQIDIGGGVVVNITQEDYDSNHFKAQALKNAENAYHIHQARTRSFDEDAKESRAAA 480
Query: 481 LRAANKSGTGFGESYSLANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGI 540
LRAANKSGTGFGESYSLANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGI
Sbjct: 481 LRAANKSGTGFGESYSLANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGI 540
Query: 541 LADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWG 600
LADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWG
Sbjct: 541 LADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWG 600
Query: 601 NPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSS 660
NPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSS
Sbjct: 601 NPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSS 660
Query: 661 SSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESH 720
SSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESH
Sbjct: 661 SSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESH 720
Query: 721 AENKSAIDENQLSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKN 780
AENKSAIDENQLSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKN
Sbjct: 721 AENKSAIDENQLSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKN 780
Query: 781 KISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELFERQETWSPFHISLKPYHI 840
KISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELFERQETWSPFHISLKPYHI
Sbjct: 781 KISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELFERQETWSPFHISLKPYHI 840
Query: 841 SKFIYRHGQIRVFNHSRDRWLRVLSPFAPDYIQRSLFHRKGINEESCFSFLRFIDISPAE 900
SKFIYRHGQIRVFNHSRDRWLRVLSPFAPDYIQRSLFHRKGINEESCFSFLRFIDISPAE
Sbjct: 841 SKFIYRHGQIRVFNHSRDRWLRVLSPFAPDYIQRSLFHRKGINEESCFSFLRFIDISPAE 900
Query: 901 MANLMLQGLLARWLALFLSLKASYRLHQLRSWGAPEGESHQRYLRNKDFLLGVNFPLSFP 960
MANLMLQGLLARWLALFLSLKASYRLHQLRSWGAPEGESHQRYLRNKDFLLGVNFPLSFP
Sbjct: 901 MANLMLQGLLARWLALFLSLKASYRLHQLRSWGAPEGESHQRYLRNKDFLLGVNFPLSFP 960
Query: 961 NLCSCPLLKSLVFSSHCKAVSGYSDQVVHQRRSATSSLRRCLLTELPSFLCVASPRVTAV 1020
NLCSCPLLKSLVFSSHCKAVSGYSDQVVHQRRSATSSLRRCLLTELPSFLCVASPRVTAV
Sbjct: 961 NLCSCPLLKSLVFSSHCKAVSGYSDQVVHQRRSATSSLRRCLLTELPSFLCVASPRVTAV 1020
Query: 1021 PLDSYCNDRSAEYERRVLKEGGSLAAKQCLLNGAPELAADWLNRRSQFFPEPAGGLWSIR 1080
PLDSYCNDRSAEYERRVLKEGGSLAAKQCLLNGAPELAADWLNRRSQFFPEPAGGLWSIR
Sbjct: 1021 PLDSYCNDRSAEYERRVLKEGGSLAAKQCLLNGAPELAADWLNRRSQFFPEPAGGLWSIR 1080
Query: 1081 PQNGWSFIRIPGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYR 1140
PQNGWSFIRIPGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYR
Sbjct: 1081 PQNGWSFIRIPGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYR 1140
Query: 1141 KHTYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNP 1200
KHTYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNP
Sbjct: 1141 KHTYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNP 1200
Query: 1201 TVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLK 1260
TVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLK
Sbjct: 1201 TVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLK 1260
Query: 1261 PKEVVSLLLDDEELEKKLRLRQEEKRQQEETNRVKERKRKREKYAEKKKKEDELDGKRRK 1320
PKEVVSLLLDDEELEKKLRLRQEEKRQQEETNRVKERKRKREKYAEKKKKEDELDGKRRK
Sbjct: 1261 PKEVVSLLLDDEELEKKLRLRQEEKRQQEETNRVKERKRKREKYAEKKKKEDELDGKRRK 1320
Query: 1321 EGVNLVIPFVPSADNSNLSADGDDSFISVDSAMPSPFSEISISSELHTGSIPLDESSSDM 1380
EGVNLVIPFVPSADNSNLSADGDDSFISVDSAMPSPFSEISISSELHTGSIPLDESSSDM
Sbjct: 1321 EGVNLVIPFVPSADNSNLSADGDDSFISVDSAMPSPFSEISISSELHTGSIPLDESSSDM 1380
Query: 1381 LVIVDDPASSAPQSRATNSPASITGSVSDTVNGISIQEMPAAGRGHSARSRGRPKGSGST 1440
LVIVDDPASSAPQSRATNSPASITGSVSDTVNGISIQEMPAAGRGHSARSRGRPKGSGST
Sbjct: 1381 LVIVDDPASSAPQSRATNSPASITGSVSDTVNGISIQEMPAAGRGHSARSRGRPKGSGST 1440
Query: 1441 AKGAGKGRSRKSTAGSAAAMAGAKAGAAAASAAAYAAYGYNVSKGISASSPLQTSLVRPA 1500
AKGAGKGRSRKSTAGSAAAMAGAKAGAAAASAAAYAAYGYNVSKGISASSPLQTSLVRPA
Sbjct: 1441 AKGAGKGRSRKSTAGSAAAMAGAKAGAAAASAAAYAAYGYNVSKGISASSPLQTSLVRPA 1500
Query: 1501 GLADFGPSSASSPLSSPLSKGNNVPGNPKNLHMTSSLAPDSLVRKQGKGTNPSGGR 1556
GLADFGPSSASSPLSSPLSKGNNVPGNPKNLHMTSSLAPDSLVRKQGKGTNPSGGR
Sbjct: 1501 GLADFGPSSASSPLSSPLSKGNNVPGNPKNLHMTSSLAPDSLVRKQGKGTNPSGGR 1556
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 312 bits (800), Expect = 1e-84
Identities = 153/339 (45%), Positives = 218/339 (64%), Gaps = 19/339 (5%)
Query: 493 ESYSLANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQ 552
+ Y+LA ++ P P + G+L+ YQ G++WL +YE+ +NGILADEMGLGKT+Q
Sbjct: 597 KGYTLATTQVKT----PIPLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQ 652
Query: 553 SIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFW 612
+I+LLAHLA + WGP LII P S + NW E R+ P FK+L Y+G +RK+ R+ W
Sbjct: 653 TISLLAHLACEKGNWGPHLIIVPTSVMLNWEMELKRWCPSFKILTYYGAQKERKLKRQGW 712
Query: 613 SQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQ 672
T+ FHV ITSY+LV+QD + F+R W+Y++LDEAQ +K+ S RW+ LL F
Sbjct: 713 ------TKPNAFHVCITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFN 766
Query: 673 CRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQL 732
+ RLLLTGTP+QN++ ELW+L+HF+MP +F SH EF EWFS + E +E +
Sbjct: 767 SQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQEYNEGLV 826
Query: 733 SRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSM 792
RLH +L+PF+LRR+K DVE ++ K E ++ C+L+ RQ+ LY +D + +
Sbjct: 827 KRLHKVLRPFLLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLY---------DDFMAQTT 877
Query: 793 GSTQQAQNTTSSLMNLVMQFRKVCNHPELFERQETWSPF 831
A S++N++MQ RKVCNHP LF+ + SPF
Sbjct: 878 TKETLATGHFMSVINILMQLRKVCNHPNLFDPRPVTSPF 916
Score = 196 bits (497), Expect = 2e-49
Identities = 98/214 (45%), Positives = 140/214 (65%), Gaps = 1/214 (0%)
Query: 1099 DSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRD 1158
D GKL L VLL +LK++GHRVLI++QMTRM+D+LE+++ Y H Y+RLDGS+++ +R+
Sbjct: 2041 DCGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQA 2100
Query: 1159 MVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ 1218
++ F IF F+LSTR+GG+G+NLT ADTV+FYDSDWNPT+D QA DR HR+GQT+
Sbjct: 2101 LMERFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRD 2160
Query: 1219 VTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEVVSLLLDDEELEKKL 1278
V +YRLI + T+EE IL++A +K + M I GGNF K ++ + L D E
Sbjct: 2161 VHIYRLISERTVEENILKKANQKRMLGDMAIEGGNFTTAYFK-QQTIRELFDMPLEEPSS 2219
Query: 1279 RLRQEEKRQQEETNRVKERKRKREKYAEKKKKED 1312
++EET K+ + + +ED
Sbjct: 2220 SSVPSAPEEEEETVASKQTHILEQALCRAEDEED 2253
Score = 31.2 bits (69), Expect = 8.2
Identities = 49/203 (24%), Positives = 77/203 (37%), Gaps = 29/203 (14%)
Query: 1351 SAMPSPFSEISISSELHTGSIPLDESSSDMLVIVDDPASSAPQSRATNSPASITGSVSDT 1410
S MP P S S T S+PL S + +SAP + ++P +++ S
Sbjct: 1413 SPMPIPNSSPLASPVSSTVSVPLSSSLPISVPTTLPAPASAPLTIPISAPLTVSASGPAL 1472
Query: 1411 VNGIS---IQEMPAAGRGHSARSRGRPKGSGSTAKGAGKGRSRKST---------AGSAA 1458
+ ++ +PAA S G + + G S S+ A +++
Sbjct: 1473 LTSVTPPLAPVVPAAPGPPSLAPSGASPSASALTLGLATAPSLSSSQTPGHPLLLAPTSS 1532
Query: 1459 AMAGAKAGAAAASAAAYAAYGYNVSKGISASSPL--QTSLVRPAGLADFGPSSASSPLSS 1516
+ G + A A + S SA +P Q SL+ PA SSAS L++
Sbjct: 1533 HVPGLNSTVAPACSPVLVPASALASPFPSAPNPAPAQASLLAPA-------SSASQALAT 1585
Query: 1517 PLSKGNNVPGNPKNLHMTSSLAP 1539
PL+ P T+ LAP
Sbjct: 1586 PLA--------PMAAPQTAILAP 1600
>gi|164419749 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform b [Homo sapiens]
Length = 1042
Score = 265 bits (678), Expect = 2e-70
Identities = 167/488 (34%), Positives = 255/488 (52%), Gaps = 72/488 (14%)
Query: 348 KKYEKVEKEHRKRAEKEALEQRKLDEEMREAKRQQR--KLNFLITQTELYAHFMSRKRDM 405
KK + V K A K ++++D E E + R + FL+ QTEL+AHF+
Sbjct: 56 KKEKNVSSFQLKLAAKAPKSEKEMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQPSAQK 115
Query: 406 GHDGIQEEILRKLEDSSTQRQIDIGGGVVVNITQEDYDSNHFKAQALKNAENAYHIHQAR 465
L + ++Q I G DY H+
Sbjct: 116 SPTSPLNMKLGRPRIKKDEKQSLISAG--------DYR------------------HRRT 149
Query: 466 TRSFDEDAKESRAAALRAANKSGTGFGESYSLANPSIRAGEDIPQPTIFNGKLKGYQLKG 525
+ DE+ ES +N IR ++ + G L+ YQ++G
Sbjct: 150 EQEEDEEL-----------------LSESRKTSNVCIRF--EVSPSYVKGGPLRDYQIRG 190
Query: 526 MNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQE 585
+NWL +LYE G+NGILADEMGLGKT+Q+IALL +L NI GP +++ P STL+NW E
Sbjct: 191 LNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNE 250
Query: 586 FTRFVPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVK 645
F R+VP +V+ + G+ R R + V +TSY++V+++ F++
Sbjct: 251 FKRWVPSLRVICFVGDKDARAAFIRD------EMMPGEWDVCVTSYEMVIKEKSVFKKFH 304
Query: 646 WQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDS 705
W+Y+V+DEA +K+ S +I+ +F+ NRLLLTGTP+QN + ELWALL+F++P +F+S
Sbjct: 305 WRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNS 364
Query: 706 HEEFNEWFSKDIESHAENKSAI-DENQLSRLHMILKPFMLRRIKKDVENELSDKIEILMY 764
++F+ WF + K+ + D+ + RLH +LKPF+LRRIK DVE L K EI +Y
Sbjct: 365 ADDFDSWF--------DTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIY 416
Query: 765 CQLTSRQKLLYQALKNKISIEDL-LQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELFE 823
L+ Q+ Y KI ++D+ + +S G + + L+N++MQ RK CNHP LF+
Sbjct: 417 LGLSKMQREWY----TKILMKDIDVLNSSGKMDKMR-----LLNILMQLRKCCNHPYLFD 467
Query: 824 RQETWSPF 831
E P+
Sbjct: 468 GAEPGPPY 475
Score = 181 bits (460), Expect = 4e-45
Identities = 104/255 (40%), Positives = 154/255 (60%), Gaps = 16/255 (6%)
Query: 1094 ESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKI 1153
E ++++SGK+ LD LL +LK QG RVLI+SQMTR++D+LE+Y ++R + Y RLDG +
Sbjct: 479 EHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPH 538
Query: 1154 SERRDMVADFQNRNDI-FVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHR 1212
ER + + F N F+F+LSTRAGGLGINL +AD VI YDSDWNP VD QAMDRAHR
Sbjct: 539 EEREEAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHR 598
Query: 1213 LGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNF---KPDTLKPKEVVSLLL 1269
+GQ K V V+RLI T+EERI++RA+ K + +VI G + + L +E++ ++
Sbjct: 599 IGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMI- 657
Query: 1270 DDEELEKKLRLRQEEKRQQEETNRVKERKRKREKYAEKKKKEDELDGKRRKEGVNLVIPF 1329
+ +E + E+ + ER +KK E++ + +K G + + F
Sbjct: 658 --RHGATHVFASKESELTDEDITTILER---------GEKKTAEMNERLQKMGESSLRNF 706
Query: 1330 VPSADNSNLSADGDD 1344
+ S +G+D
Sbjct: 707 RMDIEQSLYKFEGED 721
>gi|21071044 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a1 isoform a [Homo sapiens]
Length = 1054
Score = 265 bits (678), Expect = 2e-70
Identities = 167/488 (34%), Positives = 255/488 (52%), Gaps = 72/488 (14%)
Query: 348 KKYEKVEKEHRKRAEKEALEQRKLDEEMREAKRQQR--KLNFLITQTELYAHFMSRKRDM 405
KK + V K A K ++++D E E + R + FL+ QTEL+AHF+
Sbjct: 56 KKEKNVSSFQLKLAAKAPKSEKEMDPEYEEKMKADRAKRFEFLLKQTELFAHFIQPSAQK 115
Query: 406 GHDGIQEEILRKLEDSSTQRQIDIGGGVVVNITQEDYDSNHFKAQALKNAENAYHIHQAR 465
L + ++Q I G DY H+
Sbjct: 116 SPTSPLNMKLGRPRIKKDEKQSLISAG--------DYR------------------HRRT 149
Query: 466 TRSFDEDAKESRAAALRAANKSGTGFGESYSLANPSIRAGEDIPQPTIFNGKLKGYQLKG 525
+ DE+ ES +N IR ++ + G L+ YQ++G
Sbjct: 150 EQEEDEEL-----------------LSESRKTSNVCIRF--EVSPSYVKGGPLRDYQIRG 190
Query: 526 MNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQE 585
+NWL +LYE G+NGILADEMGLGKT+Q+IALL +L NI GP +++ P STL+NW E
Sbjct: 191 LNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNE 250
Query: 586 FTRFVPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVK 645
F R+VP +V+ + G+ R R + V +TSY++V+++ F++
Sbjct: 251 FKRWVPSLRVICFVGDKDARAAFIRD------EMMPGEWDVCVTSYEMVIKEKSVFKKFH 304
Query: 646 WQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDS 705
W+Y+V+DEA +K+ S +I+ +F+ NRLLLTGTP+QN + ELWALL+F++P +F+S
Sbjct: 305 WRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNS 364
Query: 706 HEEFNEWFSKDIESHAENKSAI-DENQLSRLHMILKPFMLRRIKKDVENELSDKIEILMY 764
++F+ WF + K+ + D+ + RLH +LKPF+LRRIK DVE L K EI +Y
Sbjct: 365 ADDFDSWF--------DTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIY 416
Query: 765 CQLTSRQKLLYQALKNKISIEDL-LQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELFE 823
L+ Q+ Y KI ++D+ + +S G + + L+N++MQ RK CNHP LF+
Sbjct: 417 LGLSKMQREWY----TKILMKDIDVLNSSGKMDKMR-----LLNILMQLRKCCNHPYLFD 467
Query: 824 RQETWSPF 831
E P+
Sbjct: 468 GAEPGPPY 475
Score = 175 bits (444), Expect = 3e-43
Identities = 104/267 (38%), Positives = 156/267 (58%), Gaps = 28/267 (10%)
Query: 1094 ESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKI 1153
E ++++SGK+ LD LL +LK QG RVLI+SQMTR++D+LE+Y ++R + Y RLDG +
Sbjct: 479 EHIVSNSGKMVVLDKLLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPH 538
Query: 1154 SERRD--MVADFQNRNDI-----------FVFLLSTRAGGLGINLTAADTVIFYDSDWNP 1200
ER D + +F + + F+F+LSTRAGGLGINL +AD VI YDSDWNP
Sbjct: 539 EEREDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNP 598
Query: 1201 TVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNF---KPD 1257
VD QAMDRAHR+GQ K V V+RLI T+EERI++RA+ K + +VI G + +
Sbjct: 599 QVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVIQQGRLIDQQSN 658
Query: 1258 TLKPKEVVSLLLDDEELEKKLRLRQEEKRQQEETNRVKERKRKREKYAEKKKKEDELDGK 1317
L +E++ ++ + +E + E+ + ER +KK E++ +
Sbjct: 659 KLAKEEMLQMI---RHGATHVFASKESELTDEDITTILER---------GEKKTAEMNER 706
Query: 1318 RRKEGVNLVIPFVPSADNSNLSADGDD 1344
+K G + + F + S +G+D
Sbjct: 707 LQKMGESSLRNFRMDIEQSLYKFEGED 733
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 259 bits (662), Expect = 1e-68
Identities = 191/657 (29%), Positives = 326/657 (49%), Gaps = 77/657 (11%)
Query: 210 KKFKEEKKLKAKLKKVKKKRRRDEELSSEESPRRHHHQTKVFAKFSHDAPPPGTKKKHLS 269
K +K K+ + ++ +K + +++ E RR HQ + + H K+ H S
Sbjct: 437 KAYKRSKRQSLREARITEKLEKQQKIEQERK-RRQKHQEYLNSILQH---AKDFKEYHRS 492
Query: 270 IE---QLNARRRKVWLSIVKKELPKANK--QKASARNLFLTNS---RKLAHQCMKEVRRA 321
+ Q + + + ++E K N+ +K R L + RKL Q K+ R A
Sbjct: 493 VTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQ-KKDKRLA 551
Query: 322 ALQAQKNCKETLPRARRLTKEMLLYWKKYEKVEKEHRKRAEKE-------ALEQRKLDEE 374
L Q + E + L ++ EK +K+ +K+AE + LDE
Sbjct: 552 YLLQQTD--EYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDET 609
Query: 375 MREAKRQQRKLNF----LITQTELY-------------AHFMSRKRDMGHDGIQEEILRK 417
+ + + ++ ++T T+ + ++ + D G +EE
Sbjct: 610 SQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEE---- 665
Query: 418 LEDSSTQRQIDIGGGVVVNITQE----DYDSNHFKAQALKNAENAYHIHQARTRSFDEDA 473
E+ + Q + + ++ D DS+ + +A HI + + D++
Sbjct: 666 -EEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDV------SEVDARHIIENAKQDVDDEY 718
Query: 474 KESRAAALRAANKSGTGFGESYSLANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLY 533
S+A A G Y++A+ ++ D + NG LK YQ+KG+ WL +LY
Sbjct: 719 GVSQALA--------RGLQSYYAVAH-AVTERVDKQSALMVNGVLKQYQIKGLEWLVSLY 769
Query: 534 EQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKF 593
+NGILADEMGLGKT+Q+IAL+ +L E + I GPFLII P STL+NW EF ++ P
Sbjct: 770 NNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSV 829
Query: 594 KVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDE 653
+ Y G+P R R F Q + F+V++T+Y+ +++D +++W+YM++DE
Sbjct: 830 VKVSYKGSPAAR---RAFVPQ----LRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 882
Query: 654 AQALKSSSSVRWKIL-LQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEW 712
+K+ ++L + RLLLTGTP+QN + ELWALL+F++PT+F S F +W
Sbjct: 883 GHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 942
Query: 713 FSKDIESHAENKSAIDENQ---LSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTS 769
F+ E +E + RLH +L+PF+LRR+KK+VE +L +K+E ++ C +++
Sbjct: 943 FNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSA 1002
Query: 770 RQKLLYQALKNKISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELFERQE 826
Q++LY+ ++ K LL ++ + T +LMN +MQ RK+CNHP +F+ E
Sbjct: 1003 LQRVLYRHMQAK---GVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIE 1056
Score = 155 bits (391), Expect = 4e-37
Identities = 79/180 (43%), Positives = 118/180 (65%), Gaps = 3/180 (1%)
Query: 1100 SGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDM 1159
SGK LD +L +L++ H+VL++ QMT ++ ++E+Y YR Y+RLDG++K +R +
Sbjct: 1079 SGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGML 1138
Query: 1160 VADFQNR-NDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ 1218
+ F ++ F+FLLSTRAGGLG+NL +ADTVI +DSDWNP D QA DRAHR+GQ +
Sbjct: 1139 LKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNE 1198
Query: 1219 VTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNF--KPDTLKPKEVVSLLLDDEELEK 1276
V V RL ++EE+IL AK K + + VI G F K + + + + +L+ EE ++
Sbjct: 1199 VRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDE 1258
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 259 bits (662), Expect = 1e-68
Identities = 191/657 (29%), Positives = 326/657 (49%), Gaps = 77/657 (11%)
Query: 210 KKFKEEKKLKAKLKKVKKKRRRDEELSSEESPRRHHHQTKVFAKFSHDAPPPGTKKKHLS 269
K +K K+ + ++ +K + +++ E RR HQ + + H K+ H S
Sbjct: 437 KAYKRSKRQSLREARITEKLEKQQKIEQERK-RRQKHQEYLNSILQH---AKDFKEYHRS 492
Query: 270 IE---QLNARRRKVWLSIVKKELPKANK--QKASARNLFLTNS---RKLAHQCMKEVRRA 321
+ Q + + + ++E K N+ +K R L + RKL Q K+ R A
Sbjct: 493 VTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQ-KKDKRLA 551
Query: 322 ALQAQKNCKETLPRARRLTKEMLLYWKKYEKVEKEHRKRAEKE-------ALEQRKLDEE 374
L Q + E + L ++ EK +K+ +K+AE + LDE
Sbjct: 552 YLLQQTD--EYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDET 609
Query: 375 MREAKRQQRKLNF----LITQTELY-------------AHFMSRKRDMGHDGIQEEILRK 417
+ + + ++ ++T T+ + ++ + D G +EE
Sbjct: 610 SQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEE---- 665
Query: 418 LEDSSTQRQIDIGGGVVVNITQE----DYDSNHFKAQALKNAENAYHIHQARTRSFDEDA 473
E+ + Q + + ++ D DS+ + +A HI + + D++
Sbjct: 666 -EEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDV------SEVDARHIIENAKQDVDDEY 718
Query: 474 KESRAAALRAANKSGTGFGESYSLANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLY 533
S+A A G Y++A+ ++ D + NG LK YQ+KG+ WL +LY
Sbjct: 719 GVSQALA--------RGLQSYYAVAH-AVTERVDKQSALMVNGVLKQYQIKGLEWLVSLY 769
Query: 534 EQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKF 593
+NGILADEMGLGKT+Q+IAL+ +L E + I GPFLII P STL+NW EF ++ P
Sbjct: 770 NNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSV 829
Query: 594 KVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDE 653
+ Y G+P R R F Q + F+V++T+Y+ +++D +++W+YM++DE
Sbjct: 830 VKVSYKGSPAAR---RAFVPQ----LRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 882
Query: 654 AQALKSSSSVRWKIL-LQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEW 712
+K+ ++L + RLLLTGTP+QN + ELWALL+F++PT+F S F +W
Sbjct: 883 GHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 942
Query: 713 FSKDIESHAENKSAIDENQ---LSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTS 769
F+ E +E + RLH +L+PF+LRR+KK+VE +L +K+E ++ C +++
Sbjct: 943 FNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSA 1002
Query: 770 RQKLLYQALKNKISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELFERQE 826
Q++LY+ ++ K LL ++ + T +LMN +MQ RK+CNHP +F+ E
Sbjct: 1003 LQRVLYRHMQAK---GVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIE 1056
Score = 158 bits (400), Expect = 3e-38
Identities = 92/236 (38%), Positives = 139/236 (58%), Gaps = 25/236 (10%)
Query: 1100 SGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDM 1159
SGK LD +L +L++ H+VL++ QMT ++ ++E+Y YR Y+RLDG++K +R +
Sbjct: 1079 SGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGML 1138
Query: 1160 VADFQNR-NDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ 1218
+ F ++ F+FLLSTRAGGLG+NL +ADTVI +DSDWNP D QA DRAHR+GQ +
Sbjct: 1139 LKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNE 1198
Query: 1219 VTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNF--KPDTLKPKEVVSLLLDDEELEK 1276
V V RL ++EE+IL AK K + + VI G F K + + + + +L+ EE ++
Sbjct: 1199 VRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDE 1258
Query: 1277 KLRLRQEEKRQQEETNRVKER-------------KRKREKYAEKKKK-----EDEL 1314
+ ++E E N++ R R+RE+ K+K EDEL
Sbjct: 1259 E----EDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDEL 1310
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 259 bits (662), Expect = 1e-68
Identities = 191/657 (29%), Positives = 326/657 (49%), Gaps = 77/657 (11%)
Query: 210 KKFKEEKKLKAKLKKVKKKRRRDEELSSEESPRRHHHQTKVFAKFSHDAPPPGTKKKHLS 269
K +K K+ + ++ +K + +++ E RR HQ + + H K+ H S
Sbjct: 437 KAYKRSKRQSLREARITEKLEKQQKIEQERK-RRQKHQEYLNSILQH---AKDFKEYHRS 492
Query: 270 IE---QLNARRRKVWLSIVKKELPKANK--QKASARNLFLTNS---RKLAHQCMKEVRRA 321
+ Q + + + ++E K N+ +K R L + RKL Q K+ R A
Sbjct: 493 VTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQ-KKDKRLA 551
Query: 322 ALQAQKNCKETLPRARRLTKEMLLYWKKYEKVEKEHRKRAEKE-------ALEQRKLDEE 374
L Q + E + L ++ EK +K+ +K+AE + LDE
Sbjct: 552 YLLQQTD--EYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDET 609
Query: 375 MREAKRQQRKLNF----LITQTELY-------------AHFMSRKRDMGHDGIQEEILRK 417
+ + + ++ ++T T+ + ++ + D G +EE
Sbjct: 610 SQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEE---- 665
Query: 418 LEDSSTQRQIDIGGGVVVNITQE----DYDSNHFKAQALKNAENAYHIHQARTRSFDEDA 473
E+ + Q + + ++ D DS+ + +A HI + + D++
Sbjct: 666 -EEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDV------SEVDARHIIENAKQDVDDEY 718
Query: 474 KESRAAALRAANKSGTGFGESYSLANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLY 533
S+A A G Y++A+ ++ D + NG LK YQ+KG+ WL +LY
Sbjct: 719 GVSQALA--------RGLQSYYAVAH-AVTERVDKQSALMVNGVLKQYQIKGLEWLVSLY 769
Query: 534 EQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKF 593
+NGILADEMGLGKT+Q+IAL+ +L E + I GPFLII P STL+NW EF ++ P
Sbjct: 770 NNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSV 829
Query: 594 KVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDE 653
+ Y G+P R R F Q + F+V++T+Y+ +++D +++W+YM++DE
Sbjct: 830 VKVSYKGSPAAR---RAFVPQ----LRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 882
Query: 654 AQALKSSSSVRWKIL-LQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEW 712
+K+ ++L + RLLLTGTP+QN + ELWALL+F++PT+F S F +W
Sbjct: 883 GHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 942
Query: 713 FSKDIESHAENKSAIDENQ---LSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTS 769
F+ E +E + RLH +L+PF+LRR+KK+VE +L +K+E ++ C +++
Sbjct: 943 FNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSA 1002
Query: 770 RQKLLYQALKNKISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELFERQE 826
Q++LY+ ++ K LL ++ + T +LMN +MQ RK+CNHP +F+ E
Sbjct: 1003 LQRVLYRHMQAK---GVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIE 1056
Score = 158 bits (400), Expect = 3e-38
Identities = 92/236 (38%), Positives = 139/236 (58%), Gaps = 25/236 (10%)
Query: 1100 SGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDM 1159
SGK LD +L +L++ H+VL++ QMT ++ ++E+Y YR Y+RLDG++K +R +
Sbjct: 1079 SGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGML 1138
Query: 1160 VADFQNR-NDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ 1218
+ F ++ F+FLLSTRAGGLG+NL +ADTVI +DSDWNP D QA DRAHR+GQ +
Sbjct: 1139 LKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNE 1198
Query: 1219 VTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNF--KPDTLKPKEVVSLLLDDEELEK 1276
V V RL ++EE+IL AK K + + VI G F K + + + + +L+ EE ++
Sbjct: 1199 VRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDE 1258
Query: 1277 KLRLRQEEKRQQEETNRVKER-------------KRKREKYAEKKKK-----EDEL 1314
+ ++E E N++ R R+RE+ K+K EDEL
Sbjct: 1259 E----EDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDEL 1310
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 259 bits (662), Expect = 1e-68
Identities = 191/657 (29%), Positives = 326/657 (49%), Gaps = 77/657 (11%)
Query: 210 KKFKEEKKLKAKLKKVKKKRRRDEELSSEESPRRHHHQTKVFAKFSHDAPPPGTKKKHLS 269
K +K K+ + ++ +K + +++ E RR HQ + + H K+ H S
Sbjct: 437 KAYKRSKRQSLREARITEKLEKQQKIEQERK-RRQKHQEYLNSILQH---AKDFKEYHRS 492
Query: 270 IE---QLNARRRKVWLSIVKKELPKANK--QKASARNLFLTNS---RKLAHQCMKEVRRA 321
+ Q + + + ++E K N+ +K R L + RKL Q K+ R A
Sbjct: 493 VTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQ-KKDKRLA 551
Query: 322 ALQAQKNCKETLPRARRLTKEMLLYWKKYEKVEKEHRKRAEKE-------ALEQRKLDEE 374
L Q + E + L ++ EK +K+ +K+AE + LDE
Sbjct: 552 YLLQQTD--EYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDET 609
Query: 375 MREAKRQQRKLNF----LITQTELY-------------AHFMSRKRDMGHDGIQEEILRK 417
+ + + ++ ++T T+ + ++ + D G +EE
Sbjct: 610 SQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEE---- 665
Query: 418 LEDSSTQRQIDIGGGVVVNITQE----DYDSNHFKAQALKNAENAYHIHQARTRSFDEDA 473
E+ + Q + + ++ D DS+ + +A HI + + D++
Sbjct: 666 -EEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDV------SEVDARHIIENAKQDVDDEY 718
Query: 474 KESRAAALRAANKSGTGFGESYSLANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLY 533
S+A A G Y++A+ ++ D + NG LK YQ+KG+ WL +LY
Sbjct: 719 GVSQALA--------RGLQSYYAVAH-AVTERVDKQSALMVNGVLKQYQIKGLEWLVSLY 769
Query: 534 EQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKF 593
+NGILADEMGLGKT+Q+IAL+ +L E + I GPFLII P STL+NW EF ++ P
Sbjct: 770 NNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSV 829
Query: 594 KVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDE 653
+ Y G+P R R F Q + F+V++T+Y+ +++D +++W+YM++DE
Sbjct: 830 VKVSYKGSPAAR---RAFVPQ----LRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 882
Query: 654 AQALKSSSSVRWKIL-LQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEW 712
+K+ ++L + RLLLTGTP+QN + ELWALL+F++PT+F S F +W
Sbjct: 883 GHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 942
Query: 713 FSKDIESHAENKSAIDENQ---LSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTS 769
F+ E +E + RLH +L+PF+LRR+KK+VE +L +K+E ++ C +++
Sbjct: 943 FNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSA 1002
Query: 770 RQKLLYQALKNKISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELFERQE 826
Q++LY+ ++ K LL ++ + T +LMN +MQ RK+CNHP +F+ E
Sbjct: 1003 LQRVLYRHMQAK---GVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIE 1056
Score = 158 bits (400), Expect = 3e-38
Identities = 92/236 (38%), Positives = 139/236 (58%), Gaps = 25/236 (10%)
Query: 1100 SGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDM 1159
SGK LD +L +L++ H+VL++ QMT ++ ++E+Y YR Y+RLDG++K +R +
Sbjct: 1079 SGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGML 1138
Query: 1160 VADFQNR-NDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ 1218
+ F ++ F+FLLSTRAGGLG+NL +ADTVI +DSDWNP D QA DRAHR+GQ +
Sbjct: 1139 LKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNE 1198
Query: 1219 VTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNF--KPDTLKPKEVVSLLLDDEELEK 1276
V V RL ++EE+IL AK K + + VI G F K + + + + +L+ EE ++
Sbjct: 1199 VRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDE 1258
Query: 1277 KLRLRQEEKRQQEETNRVKER-------------KRKREKYAEKKKK-----EDEL 1314
+ ++E E N++ R R+RE+ K+K EDEL
Sbjct: 1259 E----EDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDEL 1310
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 259 bits (662), Expect = 1e-68
Identities = 191/657 (29%), Positives = 326/657 (49%), Gaps = 77/657 (11%)
Query: 210 KKFKEEKKLKAKLKKVKKKRRRDEELSSEESPRRHHHQTKVFAKFSHDAPPPGTKKKHLS 269
K +K K+ + ++ +K + +++ E RR HQ + + H K+ H S
Sbjct: 437 KAYKRSKRQSLREARITEKLEKQQKIEQERK-RRQKHQEYLNSILQH---AKDFKEYHRS 492
Query: 270 IE---QLNARRRKVWLSIVKKELPKANK--QKASARNLFLTNS---RKLAHQCMKEVRRA 321
+ Q + + + ++E K N+ +K R L + RKL Q K+ R A
Sbjct: 493 VTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQ-KKDKRLA 551
Query: 322 ALQAQKNCKETLPRARRLTKEMLLYWKKYEKVEKEHRKRAEKE-------ALEQRKLDEE 374
L Q + E + L ++ EK +K+ +K+AE + LDE
Sbjct: 552 YLLQQTD--EYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDET 609
Query: 375 MREAKRQQRKLNF----LITQTELY-------------AHFMSRKRDMGHDGIQEEILRK 417
+ + + ++ ++T T+ + ++ + D G +EE
Sbjct: 610 SQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEE---- 665
Query: 418 LEDSSTQRQIDIGGGVVVNITQE----DYDSNHFKAQALKNAENAYHIHQARTRSFDEDA 473
E+ + Q + + ++ D DS+ + +A HI + + D++
Sbjct: 666 -EEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDV------SEVDARHIIENAKQDVDDEY 718
Query: 474 KESRAAALRAANKSGTGFGESYSLANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLY 533
S+A A G Y++A+ ++ D + NG LK YQ+KG+ WL +LY
Sbjct: 719 GVSQALA--------RGLQSYYAVAH-AVTERVDKQSALMVNGVLKQYQIKGLEWLVSLY 769
Query: 534 EQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKF 593
+NGILADEMGLGKT+Q+IAL+ +L E + I GPFLII P STL+NW EF ++ P
Sbjct: 770 NNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSV 829
Query: 594 KVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDE 653
+ Y G+P R R F Q + F+V++T+Y+ +++D +++W+YM++DE
Sbjct: 830 VKVSYKGSPAAR---RAFVPQ----LRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 882
Query: 654 AQALKSSSSVRWKIL-LQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEW 712
+K+ ++L + RLLLTGTP+QN + ELWALL+F++PT+F S F +W
Sbjct: 883 GHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 942
Query: 713 FSKDIESHAENKSAIDENQ---LSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTS 769
F+ E +E + RLH +L+PF+LRR+KK+VE +L +K+E ++ C +++
Sbjct: 943 FNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSA 1002
Query: 770 RQKLLYQALKNKISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELFERQE 826
Q++LY+ ++ K LL ++ + T +LMN +MQ RK+CNHP +F+ E
Sbjct: 1003 LQRVLYRHMQAK---GVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIE 1056
Score = 158 bits (400), Expect = 3e-38
Identities = 92/236 (38%), Positives = 139/236 (58%), Gaps = 25/236 (10%)
Query: 1100 SGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDM 1159
SGK LD +L +L++ H+VL++ QMT ++ ++E+Y YR Y+RLDG++K +R +
Sbjct: 1079 SGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGML 1138
Query: 1160 VADFQNR-NDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ 1218
+ F ++ F+FLLSTRAGGLG+NL +ADTVI +DSDWNP D QA DRAHR+GQ +
Sbjct: 1139 LKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNE 1198
Query: 1219 VTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNF--KPDTLKPKEVVSLLLDDEELEK 1276
V V RL ++EE+IL AK K + + VI G F K + + + + +L+ EE ++
Sbjct: 1199 VRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDE 1258
Query: 1277 KLRLRQEEKRQQEETNRVKER-------------KRKREKYAEKKKK-----EDEL 1314
+ ++E E N++ R R+RE+ K+K EDEL
Sbjct: 1259 E----EDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKPRLMEEDEL 1310
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 259 bits (662), Expect = 1e-68
Identities = 191/657 (29%), Positives = 326/657 (49%), Gaps = 77/657 (11%)
Query: 210 KKFKEEKKLKAKLKKVKKKRRRDEELSSEESPRRHHHQTKVFAKFSHDAPPPGTKKKHLS 269
K +K K+ + ++ +K + +++ E RR HQ + + H K+ H S
Sbjct: 437 KAYKRSKRQSLREARITEKLEKQQKIEQERK-RRQKHQEYLNSILQH---AKDFKEYHRS 492
Query: 270 IE---QLNARRRKVWLSIVKKELPKANK--QKASARNLFLTNS---RKLAHQCMKEVRRA 321
+ Q + + + ++E K N+ +K R L + RKL Q K+ R A
Sbjct: 493 VTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQ-KKDKRLA 551
Query: 322 ALQAQKNCKETLPRARRLTKEMLLYWKKYEKVEKEHRKRAEKE-------ALEQRKLDEE 374
L Q + E + L ++ EK +K+ +K+AE + LDE
Sbjct: 552 YLLQQTD--EYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDET 609
Query: 375 MREAKRQQRKLNF----LITQTELY-------------AHFMSRKRDMGHDGIQEEILRK 417
+ + + ++ ++T T+ + ++ + D G +EE
Sbjct: 610 SQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEE---- 665
Query: 418 LEDSSTQRQIDIGGGVVVNITQE----DYDSNHFKAQALKNAENAYHIHQARTRSFDEDA 473
E+ + Q + + ++ D DS+ + +A HI + + D++
Sbjct: 666 -EEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDV------SEVDARHIIENAKQDVDDEY 718
Query: 474 KESRAAALRAANKSGTGFGESYSLANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLY 533
S+A A G Y++A+ ++ D + NG LK YQ+KG+ WL +LY
Sbjct: 719 GVSQALA--------RGLQSYYAVAH-AVTERVDKQSALMVNGVLKQYQIKGLEWLVSLY 769
Query: 534 EQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKF 593
+NGILADEMGLGKT+Q+IAL+ +L E + I GPFLII P STL+NW EF ++ P
Sbjct: 770 NNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSV 829
Query: 594 KVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDE 653
+ Y G+P R R F Q + F+V++T+Y+ +++D +++W+YM++DE
Sbjct: 830 VKVSYKGSPAAR---RAFVPQ----LRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 882
Query: 654 AQALKSSSSVRWKIL-LQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEW 712
+K+ ++L + RLLLTGTP+QN + ELWALL+F++PT+F S F +W
Sbjct: 883 GHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 942
Query: 713 FSKDIESHAENKSAIDENQ---LSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTS 769
F+ E +E + RLH +L+PF+LRR+KK+VE +L +K+E ++ C +++
Sbjct: 943 FNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSA 1002
Query: 770 RQKLLYQALKNKISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELFERQE 826
Q++LY+ ++ K LL ++ + T +LMN +MQ RK+CNHP +F+ E
Sbjct: 1003 LQRVLYRHMQAK---GVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIE 1056
Score = 155 bits (391), Expect = 4e-37
Identities = 79/180 (43%), Positives = 118/180 (65%), Gaps = 3/180 (1%)
Query: 1100 SGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDM 1159
SGK LD +L +L++ H+VL++ QMT ++ ++E+Y YR Y+RLDG++K +R +
Sbjct: 1079 SGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGML 1138
Query: 1160 VADFQNR-NDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ 1218
+ F ++ F+FLLSTRAGGLG+NL +ADTVI +DSDWNP D QA DRAHR+GQ +
Sbjct: 1139 LKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNE 1198
Query: 1219 VTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNF--KPDTLKPKEVVSLLLDDEELEK 1276
V V RL ++EE+IL AK K + + VI G F K + + + + +L+ EE ++
Sbjct: 1199 VRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDE 1258
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 259 bits (662), Expect = 1e-68
Identities = 191/657 (29%), Positives = 326/657 (49%), Gaps = 77/657 (11%)
Query: 210 KKFKEEKKLKAKLKKVKKKRRRDEELSSEESPRRHHHQTKVFAKFSHDAPPPGTKKKHLS 269
K +K K+ + ++ +K + +++ E RR HQ + + H K+ H S
Sbjct: 437 KAYKRSKRQSLREARITEKLEKQQKIEQERK-RRQKHQEYLNSILQH---AKDFKEYHRS 492
Query: 270 IE---QLNARRRKVWLSIVKKELPKANK--QKASARNLFLTNS---RKLAHQCMKEVRRA 321
+ Q + + + ++E K N+ +K R L + RKL Q K+ R A
Sbjct: 493 VTGKIQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQ-KKDKRLA 551
Query: 322 ALQAQKNCKETLPRARRLTKEMLLYWKKYEKVEKEHRKRAEKE-------ALEQRKLDEE 374
L Q + E + L ++ EK +K+ +K+AE + LDE
Sbjct: 552 YLLQQTD--EYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPLDET 609
Query: 375 MREAKRQQRKLNF----LITQTELY-------------AHFMSRKRDMGHDGIQEEILRK 417
+ + + ++ ++T T+ + ++ + D G +EE
Sbjct: 610 SQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEE---- 665
Query: 418 LEDSSTQRQIDIGGGVVVNITQE----DYDSNHFKAQALKNAENAYHIHQARTRSFDEDA 473
E+ + Q + + ++ D DS+ + +A HI + + D++
Sbjct: 666 -EEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDV------SEVDARHIIENAKQDVDDEY 718
Query: 474 KESRAAALRAANKSGTGFGESYSLANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLY 533
S+A A G Y++A+ ++ D + NG LK YQ+KG+ WL +LY
Sbjct: 719 GVSQALA--------RGLQSYYAVAH-AVTERVDKQSALMVNGVLKQYQIKGLEWLVSLY 769
Query: 534 EQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKF 593
+NGILADEMGLGKT+Q+IAL+ +L E + I GPFLII P STL+NW EF ++ P
Sbjct: 770 NNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSV 829
Query: 594 KVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDE 653
+ Y G+P R R F Q + F+V++T+Y+ +++D +++W+YM++DE
Sbjct: 830 VKVSYKGSPAAR---RAFVPQ----LRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDE 882
Query: 654 AQALKSSSSVRWKIL-LQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEW 712
+K+ ++L + RLLLTGTP+QN + ELWALL+F++PT+F S F +W
Sbjct: 883 GHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQW 942
Query: 713 FSKDIESHAENKSAIDENQ---LSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTS 769
F+ E +E + RLH +L+PF+LRR+KK+VE +L +K+E ++ C +++
Sbjct: 943 FNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSA 1002
Query: 770 RQKLLYQALKNKISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELFERQE 826
Q++LY+ ++ K LL ++ + T +LMN +MQ RK+CNHP +F+ E
Sbjct: 1003 LQRVLYRHMQAK---GVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIE 1056
Score = 155 bits (391), Expect = 4e-37
Identities = 79/180 (43%), Positives = 118/180 (65%), Gaps = 3/180 (1%)
Query: 1100 SGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDM 1159
SGK LD +L +L++ H+VL++ QMT ++ ++E+Y YR Y+RLDG++K +R +
Sbjct: 1079 SGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGML 1138
Query: 1160 VADFQNR-NDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ 1218
+ F ++ F+FLLSTRAGGLG+NL +ADTVI +DSDWNP D QA DRAHR+GQ +
Sbjct: 1139 LKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNE 1198
Query: 1219 VTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNF--KPDTLKPKEVVSLLLDDEELEK 1276
V V RL ++EE+IL AK K + + VI G F K + + + + +L+ EE ++
Sbjct: 1199 VRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDE 1258
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 258 bits (660), Expect = 2e-68
Identities = 186/647 (28%), Positives = 318/647 (49%), Gaps = 63/647 (9%)
Query: 210 KKFKEEKKLKAKLKKVKKKRRRDEELSSEESPRRHHHQTKVFAKFSHDAPPPGTKKKHLS 269
K +K K+ + ++ +K + +++ E RR HQ + + H K+ H S
Sbjct: 413 KAYKRSKRQTLREARMTEKLEKQQKIEQERK-RRQKHQEYLNSILQH---AKDFKEYHRS 468
Query: 270 IE---QLNARRRKVWLSIVKKELPKANK--QKASARNLFLTNS---RKLAHQCMKEVRRA 321
+ Q ++ W + ++E K + +K R L + RKL Q K+ RR
Sbjct: 469 VAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQ--KKDRRL 526
Query: 322 ALQAQKNCKETLPRARRLTKEMLLYWKKYEKVEKEHRKRAEKEALEQRK-------LDEE 374
A Q +T LT + + + EK+ R+R +K+A E + D E
Sbjct: 527 AYLLQ----QTDEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGESALGPDGE 582
Query: 375 MREAKRQQRKLNFLITQTELYAHFMSRKRDMGHDGIQEEILRKLEDSSTQRQIDIGGGVV 434
+ Q L +T TE + K G + K +++ G V
Sbjct: 583 PIDESSQMSDLPVKVTHTE------TGKVLFGPEA------PKASQLDAWLEMNPGYEVA 630
Query: 435 VNITQEDYDSNHFKAQ-----ALKNAENAYHIHQARTRSFDEDAKESRAAALRAANK--- 486
E+ DS++ + + + E + ++DAK+ A + +
Sbjct: 631 PRSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYS 690
Query: 487 ---SGTGFGESYSLANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILAD 543
S G Y++A+ +I + + NG LK YQL+G+ W+ +LY +NGILAD
Sbjct: 691 MQYSARGSQSYYTVAH-AISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILAD 749
Query: 544 EMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPH 603
EMGLGKT+Q+IAL+ +L E + + GP+LII P STL+NW EF ++ P + Y G P
Sbjct: 750 EMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPA 809
Query: 604 DRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSV 663
R+ + + F+V++T+Y+ +++D +++W+YM++DE +K+
Sbjct: 810 MRRSL-------VPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCK 862
Query: 664 RWKIL-LQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAE 722
++L + R+LLTGTP+QN + ELWALL+F++PT+F S F +WF+ E
Sbjct: 863 LTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGE 922
Query: 723 NKSAIDENQ---LSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALK 779
+E + RLH +L+PF+LRR+KK+VE++L +K+E ++ C +++ QK+LY+ ++
Sbjct: 923 RVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQ 982
Query: 780 NKISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELFERQE 826
K LL ++ + +LMN +MQ RK+CNHP +F+ E
Sbjct: 983 AK---GILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIE 1026
Score = 160 bits (404), Expect = 1e-38
Identities = 99/248 (39%), Positives = 144/248 (58%), Gaps = 18/248 (7%)
Query: 1084 GWSFIRIPGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHT 1143
G+S I G E L SGK LD +L +L++ HRVL++ QMT ++ ++E+Y +R
Sbjct: 1034 GYSNGVINGAE-LYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFL 1092
Query: 1144 YMRLDGSSKISERRDMVADFQNR-NDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTV 1202
Y+RLDG++K +R ++ F + F+FLLSTRAGGLG+NL AADTV+ +DSDWNP
Sbjct: 1093 YLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQ 1152
Query: 1203 DQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNF--KPDTLK 1260
D QA DRAHR+GQ +V V RL ++EE+IL AK K + + VI G F K + +
Sbjct: 1153 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1212
Query: 1261 PKEVVSLLLD-DEELEKKLRLRQEEKRQQEETNRVKE--------RKRKREKYAEKKKK- 1310
+ + +L+ +EE E++ + +E Q R +E R+RE K+K
Sbjct: 1213 RRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRRREDARNPKRKP 1272
Query: 1311 ----EDEL 1314
EDEL
Sbjct: 1273 RLMEEDEL 1280
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 258 bits (660), Expect = 2e-68
Identities = 186/647 (28%), Positives = 318/647 (49%), Gaps = 63/647 (9%)
Query: 210 KKFKEEKKLKAKLKKVKKKRRRDEELSSEESPRRHHHQTKVFAKFSHDAPPPGTKKKHLS 269
K +K K+ + ++ +K + +++ E RR HQ + + H K+ H S
Sbjct: 413 KAYKRSKRQTLREARMTEKLEKQQKIEQERK-RRQKHQEYLNSILQH---AKDFKEYHRS 468
Query: 270 IE---QLNARRRKVWLSIVKKELPKANK--QKASARNLFLTNS---RKLAHQCMKEVRRA 321
+ Q ++ W + ++E K + +K R L + RKL Q K+ RR
Sbjct: 469 VAGKIQKLSKAVATWHANTEREQKKETERIEKERMRRLMAEDEEGYRKLIDQ--KKDRRL 526
Query: 322 ALQAQKNCKETLPRARRLTKEMLLYWKKYEKVEKEHRKRAEKEALEQRK-------LDEE 374
A Q +T LT + + + EK+ R+R +K+A E + D E
Sbjct: 527 AYLLQ----QTDEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEENAEGGESALGPDGE 582
Query: 375 MREAKRQQRKLNFLITQTELYAHFMSRKRDMGHDGIQEEILRKLEDSSTQRQIDIGGGVV 434
+ Q L +T TE + K G + K +++ G V
Sbjct: 583 PIDESSQMSDLPVKVTHTE------TGKVLFGPEA------PKASQLDAWLEMNPGYEVA 630
Query: 435 VNITQEDYDSNHFKAQ-----ALKNAENAYHIHQARTRSFDEDAKESRAAALRAANK--- 486
E+ DS++ + + + E + ++DAK+ A + +
Sbjct: 631 PRSDSEESDSDYEEEDEEEESSRQETEEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYS 690
Query: 487 ---SGTGFGESYSLANPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILAD 543
S G Y++A+ +I + + NG LK YQL+G+ W+ +LY +NGILAD
Sbjct: 691 MQYSARGSQSYYTVAH-AISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILAD 749
Query: 544 EMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPH 603
EMGLGKT+Q+IAL+ +L E + + GP+LII P STL+NW EF ++ P + Y G P
Sbjct: 750 EMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLSTLSNWTYEFDKWAPSVVKISYKGTPA 809
Query: 604 DRKVIRRFWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSV 663
R+ + + F+V++T+Y+ +++D +++W+YM++DE +K+
Sbjct: 810 MRRSL-------VPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCK 862
Query: 664 RWKIL-LQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAE 722
++L + R+LLTGTP+QN + ELWALL+F++PT+F S F +WF+ E
Sbjct: 863 LTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGE 922
Query: 723 NKSAIDENQ---LSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALK 779
+E + RLH +L+PF+LRR+KK+VE++L +K+E ++ C +++ QK+LY+ ++
Sbjct: 923 RVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQ 982
Query: 780 NKISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELFERQE 826
K LL ++ + +LMN +MQ RK+CNHP +F+ E
Sbjct: 983 AK---GILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIE 1026
Score = 160 bits (404), Expect = 1e-38
Identities = 99/248 (39%), Positives = 144/248 (58%), Gaps = 18/248 (7%)
Query: 1084 GWSFIRIPGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHT 1143
G+S I G E L SGK LD +L +L++ HRVL++ QMT ++ ++E+Y +R
Sbjct: 1034 GYSNGVINGAE-LYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFL 1092
Query: 1144 YMRLDGSSKISERRDMVADFQNR-NDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTV 1202
Y+RLDG++K +R ++ F + F+FLLSTRAGGLG+NL AADTV+ +DSDWNP
Sbjct: 1093 YLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQ 1152
Query: 1203 DQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNF--KPDTLK 1260
D QA DRAHR+GQ +V V RL ++EE+IL AK K + + VI G F K + +
Sbjct: 1153 DLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHE 1212
Query: 1261 PKEVVSLLLD-DEELEKKLRLRQEEKRQQEETNRVKE--------RKRKREKYAEKKKK- 1310
+ + +L+ +EE E++ + +E Q R +E R+RE K+K
Sbjct: 1213 RRAFLQAILEHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRRREDARNPKRKP 1272
Query: 1311 ----EDEL 1314
EDEL
Sbjct: 1273 RLMEEDEL 1280
>gi|21071058 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a5 [Homo sapiens]
Length = 1052
Score = 249 bits (637), Expect = 1e-65
Identities = 129/317 (40%), Positives = 199/317 (62%), Gaps = 23/317 (7%)
Query: 516 GKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISP 575
GKL+ YQ++G+NWL +LYE GINGILADEMGLGKT+Q+I+LL ++ NI GP +++ P
Sbjct: 178 GKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVP 237
Query: 576 ASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVITSYQLVV 635
STL+NW EF R+VP + + G+ R R + V +TSY++++
Sbjct: 238 KSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRD------VLLPGEWDVCVTSYEMLI 291
Query: 636 QDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALL 695
++ F++ W+Y+V+DEA +K+ S +I+ +F+ NRLLLTGTP+QN + ELW+LL
Sbjct: 292 KEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWSLL 351
Query: 696 HFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDVENEL 755
+F++P +F+S ++F+ WF N D+ + RLHM+L+PF+LRRIK DVE L
Sbjct: 352 NFLLPDVFNSADDFDSWFD-------TNNCLGDQKLVERLHMVLRPFLLRRIKADVEKSL 404
Query: 756 SDKIEILMYCQLTSRQKLLYQALKNKISIEDL-LQSSMGSTQQAQNTTSSLMNLVMQFRK 814
K E+ +Y L+ Q+ Y +I ++D+ + +S G + + L+N++MQ RK
Sbjct: 405 PPKKEVKIYVGLSKMQREWY----TRILMKDIDILNSAGKMDKMR-----LLNILMQLRK 455
Query: 815 VCNHPELFERQETWSPF 831
CNHP LF+ E P+
Sbjct: 456 CCNHPYLFDGAEPGPPY 472
Score = 187 bits (475), Expect = 7e-47
Identities = 107/250 (42%), Positives = 148/250 (59%), Gaps = 10/250 (4%)
Query: 1096 LITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISE 1155
L+T+SGK+ LD LL +LK QG RVLI+SQMTR++D+LE+Y ++R + Y RLDG + E
Sbjct: 478 LVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDE 537
Query: 1156 RRDMVADFQNRNDI-FVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLG 1214
R+D + + N FVF+LSTRAGGLGINL AD VI YDSDWNP VD QAMDRAHR+G
Sbjct: 538 RQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIG 597
Query: 1215 QTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEVVSLLLDDEEL 1274
QTK V V+R I T+EERI++RA+ K + +VI G L +L
Sbjct: 598 QTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMIRHG 657
Query: 1275 EKKLRLRQEEKRQQEETNRVKERKRKREKYAEKKKKEDELDGKRRKEGVNLVIPFVPSAD 1334
+ +E + E+ + + ER KK E++ K K G + + F +
Sbjct: 658 ATHVFASKESEITDEDIDGILER---------GAKKTAEMNEKLSKMGESSLRNFTMDTE 708
Query: 1335 NSNLSADGDD 1344
+S + +G+D
Sbjct: 709 SSVYNFEGED 718
>gi|21914927 helicase, lymphoid-specific [Homo sapiens]
Length = 838
Score = 228 bits (580), Expect = 5e-59
Identities = 147/469 (31%), Positives = 245/469 (52%), Gaps = 37/469 (7%)
Query: 362 EKEALEQRKLDEEMREAKRQQRKLNFLITQTELYAHFMSRKRD---MGHDGIQEEILRKL 418
E++ LE+ ++ + + + R+L L+ ++ +Y+ F+ K + + +E++ RK
Sbjct: 45 ERKMLEKARMSWDRESTEIRYRRLQHLLEKSNIYSKFLLTKMEQQQLEEQKKKEKLERKK 104
Query: 419 EDSSTQR---QIDIGGGVVVNITQEDYDSNHFKAQALKNAENAYHIHQARTRSFDEDAKE 475
E ++ ID V + + + + + E + + + +++
Sbjct: 105 ESLKVKKGKNSIDASEEKPVMRKKRGREDESYNISEVMSKEEILSVAKKNKKENEDENSS 164
Query: 476 SRAAALRAANKSGTGFGESYSLANPSIRA-------------GEDIP--QPTIFNGK-LK 519
S + K+ + ++R G+ +P QP F G ++
Sbjct: 165 STNLCVEDLQKNKDSNSIIKDRLSETVRQNTKFFFDPVRKCNGQPVPFQQPKHFTGGVMR 224
Query: 520 GYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTL 579
YQ++GM WL L+E GINGILADEMGLGKTVQ IA +A + +R + GPFL+ P STL
Sbjct: 225 WYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQR-GVPGPFLVCGPLSTL 283
Query: 580 NNWHQEFTRFVPKFKVLPYWGNPHDR-KVIRRFWSQK-TLYTQDAPFHVVITSYQLVVQD 637
NW EF RF P + Y G +R K++R + +K TL VVITS+++ ++D
Sbjct: 284 PNWMAEFKRFTPDIPTMLYHGTQEERQKLVRNIYKRKGTLQIHP----VVITSFEIAMRD 339
Query: 638 VKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHF 697
Q W+Y+++DE +K+ + L +F N+LLLTGTP+QN ++ELW+LL+F
Sbjct: 340 RNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNF 399
Query: 698 IMPTLFDSHEEFNEWFSKDIESHAENKSAI-----DENQLSRLHMILKPFMLRRIKKDVE 752
++P +FD + F WF DI S +E I ++N L LH IL PF+LRR+K DV
Sbjct: 400 LLPDVFDDLKSFESWF--DITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVA 457
Query: 753 NELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQNT 801
E+ K E+++Y L+ +Q++ Y A+ N+ +I ++ SS T + T
Sbjct: 458 LEVPPKREVVVYAPLSKKQEIFYTAIVNR-TIANMFGSSEKETIELSPT 505
Score = 186 bits (472), Expect = 2e-46
Identities = 96/213 (45%), Positives = 139/213 (65%), Gaps = 10/213 (4%)
Query: 1094 ESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKI 1153
E L+T+SGK LD +L LK +GH+VL++SQMT M+D+L +Y R + RLDGS
Sbjct: 592 EELVTNSGKFLILDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSY 651
Query: 1154 SERRDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRL 1213
SER + F ++F+FL+STRAGGLGINLTAADTVI YDSDWNP D QA DR HR+
Sbjct: 652 SEREKNMHSFNTDPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRI 711
Query: 1214 GQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVI---------SGGNFKPDTLKPKEV 1264
GQTK V VYRL+ TI+++I++RA K ++++++I SG N + L PKE+
Sbjct: 712 GQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLIIHKNHFKGGQSGLNLSKNFLDPKEL 771
Query: 1265 VSLLLDDEELEKKLRLRQEEKRQQEETNRVKER 1297
+ LL + E++++ +E+ ++ + +R
Sbjct: 772 ME-LLKSRDYEREIKGSREKVISDKDLELLLDR 803
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 228 bits (580), Expect = 5e-59
Identities = 122/321 (38%), Positives = 197/321 (61%), Gaps = 25/321 (7%)
Query: 510 QPTIFNGK---LKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENI 566
QP G+ L+ YQL+G+NWLA+ + + + ILADEMGLGKT+Q+I+ L++L + +
Sbjct: 473 QPAYLGGENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQL 532
Query: 567 WGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRF-WSQKTLYTQDAPFH 625
+GPFLI+ P STL +W +EF + P+ V+ Y G+ R IR + W T+ F+
Sbjct: 533 YGPFLIVVPLSTLTSWQREFEIWAPEINVVVYIGDLMSRNTIREYEWIHS--QTKRLKFN 590
Query: 626 VVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQ 685
+IT+Y+++++D + W ++ +DEA LK+ S+ +K L+ F+ +RLL+TGTP+Q
Sbjct: 591 ALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQ 650
Query: 686 NTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLR 745
N++ ELW+LLHFIMP F+ E+F E H + + EN LH +L+PF+LR
Sbjct: 651 NSLKELWSLLHFIMPEKFEFWEDFE-------EDHGKGR----ENGYQSLHKVLEPFLLR 699
Query: 746 RIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQNTTSSL 805
R+KKDVE L K+E ++ ++++ QK Y+ + + + + L + + GS TS
Sbjct: 700 RVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTR-NYKALAKGTRGS-------TSGF 751
Query: 806 MNLVMQFRKVCNHPELFERQE 826
+N+VM+ +K CNH L + E
Sbjct: 752 LNIVMELKKCCNHCYLIKPPE 772
Score = 176 bits (447), Expect = 1e-43
Identities = 106/254 (41%), Positives = 147/254 (57%), Gaps = 29/254 (11%)
Query: 1095 SLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKIS 1154
SLI SGKL LD LLTRL+ +G+RVLI+SQM RM+D+L EY+ + + + RLDGS K
Sbjct: 785 SLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGE 844
Query: 1155 ERRDMVADFQ-NRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRL 1213
R+ + F + ++ F FLLSTRAGGLGINL +ADTV+ +DSDWNP D QA RAHR+
Sbjct: 845 IRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRI 904
Query: 1214 GQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVI-------------SGGNFKPDTLK 1260
GQ KQV +YRL+ KGT+EE I++RAK+K + +VI + G +
Sbjct: 905 GQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRTILENNSGRSNSNPFN 964
Query: 1261 PKEVVSLL-LDDEELEKKLR--------------LRQEEKRQQEETNRVKERKRKREKYA 1305
+E+ ++L E+L K+L LR E R+ E + + + K A
Sbjct: 965 KEELTAILKFGAEDLFKELEGEESEPQEMDIDEILRLAETRENEVSTSATDELLSQFKVA 1024
Query: 1306 EKKKKEDELDGKRR 1319
EDE + + R
Sbjct: 1025 NFATMEDEEELEER 1038
>gi|190358536 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 226 bits (577), Expect = 1e-58
Identities = 129/329 (39%), Positives = 202/329 (61%), Gaps = 21/329 (6%)
Query: 505 GEDIPQPTIFNGKL--KGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAE 562
G +I QP+I N L K YQ G+NWLA +++ G+NGILADEMGLGKT+Q+IA LA+L +
Sbjct: 482 GWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQ 541
Query: 563 RENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDA 622
N GP LI+ PAST++NW +E + P KVL Y+G+ +RK IR ++++
Sbjct: 542 EGNN-GPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRF-----NIHSRYE 595
Query: 623 PFHVVITSYQLVVQ---DVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLL 679
++V++T+Y + D F+R+K Y + DE LK+ S+R++ L+ NRLLL
Sbjct: 596 DYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655
Query: 680 TGTPIQNTMAELWALLHFIMPTLFDSH-EEFNEWFSKDIESHAENKSAIDENQLSRLHMI 738
TGTP+QN + EL +LL+F+MP +F S E FS +S A+ +S ++ +++ I
Sbjct: 656 TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKS-ADEQSIYEKERIAHAKQI 714
Query: 739 LKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQA 798
+KPF+LRR+K++V +L K + + C ++ +Q+ LY L N+ L+ S+ +
Sbjct: 715 IKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNR------LKKSINNLVTE 768
Query: 799 QNTTSSLMNLVMQFRKVCNHPELFERQET 827
+NT + N++MQ RK+ NHP L + T
Sbjct: 769 KNT--EMCNVMMQLRKMANHPLLHRQYYT 795
Score = 158 bits (399), Expect = 4e-38
Identities = 78/151 (51%), Positives = 112/151 (74%)
Query: 1096 LITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISE 1155
LI DSGK L +L+ LK +G RV+++SQ T M+D+LE + + +H Y+RLDG ++ISE
Sbjct: 851 LILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISE 910
Query: 1156 RRDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQ 1215
R ++ +F DIFVFLLST+AGGLGINLT+A+ VI +D D NP D+QA DR HR+GQ
Sbjct: 911 RIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQ 970
Query: 1216 TKQVTVYRLICKGTIEERILQRAKEKSEIQR 1246
TK+V V +LI +GTIEE +L+ ++K ++++
Sbjct: 971 TKEVLVIKLISQGTIEESMLKINQQKLKLEQ 1001
>gi|190358532 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform a [Homo sapiens]
Length = 1028
Score = 226 bits (577), Expect = 1e-58
Identities = 129/329 (39%), Positives = 202/329 (61%), Gaps = 21/329 (6%)
Query: 505 GEDIPQPTIFNGKL--KGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAE 562
G +I QP+I N L K YQ G+NWLA +++ G+NGILADEMGLGKT+Q+IA LA+L +
Sbjct: 482 GWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQ 541
Query: 563 RENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDA 622
N GP LI+ PAST++NW +E + P KVL Y+G+ +RK IR ++++
Sbjct: 542 EGNN-GPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRF-----NIHSRYE 595
Query: 623 PFHVVITSYQLVVQ---DVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLL 679
++V++T+Y + D F+R+K Y + DE LK+ S+R++ L+ NRLLL
Sbjct: 596 DYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655
Query: 680 TGTPIQNTMAELWALLHFIMPTLFDSH-EEFNEWFSKDIESHAENKSAIDENQLSRLHMI 738
TGTP+QN + EL +LL+F+MP +F S E FS +S A+ +S ++ +++ I
Sbjct: 656 TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKS-ADEQSIYEKERIAHAKQI 714
Query: 739 LKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQA 798
+KPF+LRR+K++V +L K + + C ++ +Q+ LY L N+ L+ S+ +
Sbjct: 715 IKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNR------LKKSINNLVTE 768
Query: 799 QNTTSSLMNLVMQFRKVCNHPELFERQET 827
+NT + N++MQ RK+ NHP L + T
Sbjct: 769 KNT--EMCNVMMQLRKMANHPLLHRQYYT 795
Score = 158 bits (399), Expect = 4e-38
Identities = 78/151 (51%), Positives = 112/151 (74%)
Query: 1096 LITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISE 1155
LI DSGK L +L+ LK +G RV+++SQ T M+D+LE + + +H Y+RLDG ++ISE
Sbjct: 851 LILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISE 910
Query: 1156 RRDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQ 1215
R ++ +F DIFVFLLST+AGGLGINLT+A+ VI +D D NP D+QA DR HR+GQ
Sbjct: 911 RIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQ 970
Query: 1216 TKQVTVYRLICKGTIEERILQRAKEKSEIQR 1246
TK+V V +LI +GTIEE +L+ ++K ++++
Sbjct: 971 TKEVLVIKLISQGTIEESMLKINQQKLKLEQ 1001
>gi|190358534 SWI/SNF-related, matrix-associated actin-dependent
regulator of chromatin, subfamily a, containing DEAD/H
box 1 isoform b [Homo sapiens]
Length = 1026
Score = 224 bits (571), Expect = 5e-58
Identities = 127/329 (38%), Positives = 202/329 (61%), Gaps = 23/329 (6%)
Query: 505 GEDIPQPTIFNGKL--KGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAE 562
G +I QP+I N L K YQ G+NWLA +++ G+NGILADEMGLGKT+Q+IA LA+L +
Sbjct: 482 GWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLYQ 541
Query: 563 RENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDA 622
N GP LI+ PAST++NW +E + P KVL Y+G+ +RK IR ++++
Sbjct: 542 EGNN-GPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRF-----NIHSRYE 595
Query: 623 PFHVVITSYQLVVQ---DVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLL 679
++V++T+Y + D F+R+K Y + DE LK+ S+R++ L+ NRLLL
Sbjct: 596 DYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLL 655
Query: 680 TGTPIQNTMAELWALLHFIMPTLFDSH-EEFNEWFSKDIESHAENKSAIDENQLSRLHMI 738
TGTP+QN + EL +LL+F+MP +F S E FS +S A+ +S ++ +++ I
Sbjct: 656 TGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKS-ADEQSIYEKERIAHAKQI 714
Query: 739 LKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQA 798
+KPF+LRR+K++V +L K + + C ++ +Q+ LY L N+ L+ S+ + ++
Sbjct: 715 IKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNR------LKKSINNLEK- 767
Query: 799 QNTTSSLMNLVMQFRKVCNHPELFERQET 827
+ + N++MQ RK+ NHP L + T
Sbjct: 768 ---NTEMCNVMMQLRKMANHPLLHRQYYT 793
Score = 158 bits (399), Expect = 4e-38
Identities = 78/151 (51%), Positives = 112/151 (74%)
Query: 1096 LITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISE 1155
LI DSGK L +L+ LK +G RV+++SQ T M+D+LE + + +H Y+RLDG ++ISE
Sbjct: 849 LILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISE 908
Query: 1156 RRDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQ 1215
R ++ +F DIFVFLLST+AGGLGINLT+A+ VI +D D NP D+QA DR HR+GQ
Sbjct: 909 RIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQ 968
Query: 1216 TKQVTVYRLICKGTIEERILQRAKEKSEIQR 1246
TK+V V +LI +GTIEE +L+ ++K ++++
Sbjct: 969 TKEVLVIKLISQGTIEESMLKINQQKLKLEQ 999
>gi|56549696 E1A binding protein p400 [Homo sapiens]
Length = 3122
Score = 221 bits (563), Expect = 4e-57
Identities = 160/581 (27%), Positives = 276/581 (47%), Gaps = 70/581 (12%)
Query: 297 ASARNLFLTNSRKLAHQCMKEVRRAALQAQKNCKETLPRARRLT----KEMLLYWKKYEK 352
A R + ++KL ++ L+ ++ KE R RR+ +E+ +W E+
Sbjct: 790 AQERRWKVAAAKKLVRTVVRHHEEKQLREERGKKEEQSRLRRIAASTAREIECFWSNIEQ 849
Query: 353 V-EKEHRKRAEKEALEQRKLDEEMREAKRQQRKLNFLITQTELYAHFMSRKRDMGHDGIQ 411
V E + R E++ + L + R K + K + ++ L + RKR
Sbjct: 850 VVEIKLRVELEEKRKKALNLQKVSRRGKELRPKGFDALQESSLDSGMSGRKRKASISLTD 909
Query: 412 EEILRKLEDSSTQRQIDIGGGVVVNITQEDYDSNHFKAQAL---KNAENAYHIHQARTR- 467
+E+ ++ T + + GVV + T+ + + L K E A+ R
Sbjct: 910 DEVD---DEEETIEEEEANEGVVDHQTELSNLAKEAELPLLDLMKLYEGAFLPSSQWPRP 966
Query: 468 -------SFDEDA------KESRAAAL-----------RAANKSGTGFGESYSLANPSIR 503
S +EDA +ESR + +AA + G + +A+ +
Sbjct: 967 KPDGEDTSGEEDADDCPGDRESRKDLVLIDSLFIMDQFKAAERMNIGKPNAKDIADVTAV 1026
Query: 504 AGEDIPQ-------------PTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKT 550
A +P+ P++ G L+ YQ G++WLA LY + +NGILADE GLGKT
Sbjct: 1027 AEAILPKGSARVTTSVKFNAPSLLYGALRDYQKIGLDWLAKLYRKNLNGILADEAGLGKT 1086
Query: 551 VQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRR 610
VQ IA AHLA E WGP L++ + + W E R+ P K+L Y G+ + K R+
Sbjct: 1087 VQIIAFFAHLACNEGNWGPHLVVVRSCNILKWELELKRWCPGLKILSYIGSHRELKAKRQ 1146
Query: 611 FWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQ 670
W++ FHV ITSY + + F RV+W+ +V+DE Q +K + W+ +
Sbjct: 1147 EWAEPN------SFHVCITSYTQFFRGLTAFTRVRWKCLVIDEMQRVKGMTERHWEAVFT 1200
Query: 671 FQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDEN 730
Q + RLLL +P+ NT ELW ++HF++P + + S + + +E
Sbjct: 1201 LQSQQRLLLIDSPLHNTFLELWTMVHFLVPGI------SRPYLSSPLRAPSEESQDYYHK 1254
Query: 731 QLSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQS 790
+ RLH + +PF+LRR K+DVE +L+ K E ++ C+L++RQK LY+ + + ++ L+S
Sbjct: 1255 VVIRLHRVTQPFILRRTKRDVEKQLTKKYEHVLKCRLSNRQKALYEDVILQPGTQEALKS 1314
Query: 791 SMGSTQQAQNTTSSLMNLVMQFRKVCNHPELFERQETWSPF 831
++++++++ +++CNHP L E + S +
Sbjct: 1315 ---------GHFVNVLSILVRLQRICNHPGLVEPRHPGSSY 1346
Score = 129 bits (323), Expect = 3e-29
Identities = 83/256 (32%), Positives = 139/256 (54%), Gaps = 13/256 (5%)
Query: 1099 DSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRD 1158
DSGKL AL +LL +LKS+G RVLI SQM M+D+LE ++ + TY+R+D ++ +R++
Sbjct: 1859 DSGKLEALAILLQKLKSEGRRVLILSQMILMLDILEMFLNFHYLTYVRIDENASSEQRQE 1918
Query: 1159 MVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQ 1218
++ F IF +LST + GINL ADTV+FYD+D NP +D +A + R+G+ K
Sbjct: 1919 LMRSFNRDRRIFCAILSTHSRTTGINLVEADTVVFYDNDLNPVMDAKAQEWCDRIGRCKD 1978
Query: 1219 VTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEVVSLL-----LDDE- 1272
+ +YRL+ +IEE++L+ K I+ + G ++ L + + L +DD
Sbjct: 1979 IHIYRLVSGNSIEEKLLKNG-TKDLIREVAAQGNDYSMAFLTQRTIQELFEVYSPMDDAG 2037
Query: 1273 ---ELEKKLRLRQEEKRQQEETNRVKERKRKREKYAEKKKKEDELDGKRRKEGVNLVIPF 1329
+ E+ + L QE + ++ + K E +++ + K +EGV
Sbjct: 2038 FPVKAEEFVVLSQEPSVTETIAPKIARPFIEALKSIEYLEEDAQ---KSAQEGVLGPHTD 2094
Query: 1330 VPSADNSNLSADGDDS 1345
S+D+ N+ D + S
Sbjct: 2095 ALSSDSENMPCDEEPS 2110
>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
sapiens]
Length = 1710
Score = 219 bits (559), Expect = 1e-56
Identities = 190/766 (24%), Positives = 347/766 (45%), Gaps = 88/766 (11%)
Query: 82 GETSGAGSSGMLNTYSLNGVLQSESKCDKGNLYNFS-------------KLKKSRKWLKS 128
G SG+ S +T N V K D + S K ++ ++ +
Sbjct: 55 GSESGSQSESESDTSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAILKKQQQQQQQQQH 114
Query: 129 ILLSDESSEADSQSEDDDEEELNLSREELHNMLRLHKYKKLHQNKYSKDKELQQYQYYSA 188
S+ SE DS S +D ++ + + + H ++ D E ++ + S+
Sbjct: 115 QASSNSGSEEDSSSSEDSDDSSSEVKRKKHKDEDWQMSGSGSPSQSGSDSESEEEREKSS 174
Query: 189 --GLLSTYDPFYEQQRHLLGPKKKKFKEEKKLKAKLKKVKKKRRRDEELSSEESPRRHHH 246
S Y+P + + + K +K L K +++ D+E + R
Sbjct: 175 CDETESDYEPKNKVKSRKPQNRSKSKNGKKILGQKKRQIDSSEEDDDEEDYDNDKRSSRR 234
Query: 247 QTKVFAKFSHDAPPPGTKKKHLSIEQLNARRRKVWLSIVKKELPKANKQKASARNLFLTN 306
Q V + D E++ + L + +++P+ +++ F+
Sbjct: 235 QATVNVSYKED-------------EEMKTDSDDL-LEVCGEDVPQPEEEEFETIERFMDC 280
Query: 307 --SRKLAHQCMKEVRRAALQAQKNCKETLPRARRLTK-EMLLYWKKYEKVEKEHRKRAEK 363
RK A + A++A + + + + + L+ WK + + H +
Sbjct: 281 RIGRKGATGATTTIY--AVEADGDPNAGFEKNKEPGEIQYLIKWKGWSHI---HNTWETE 335
Query: 364 EALEQ------RKLDEEMREAKRQQRKLNFLITQTELYAHFMSRKRDMGHDGIQEEILRK 417
E L+Q +KLD ++ + +R L + Y + D H Q +I+ +
Sbjct: 336 ETLKQQNVRGMKKLDNYKKKDQETKRWLKNASPEDVEYYNCQQELTDDLHK--QYQIVER 393
Query: 418 LEDSSTQRQIDIGGGVVVNITQEDYDSNHFKAQALKNAENAYHIHQARTRSFDEDAKESR 477
+ S Q+ + Y + K Q L +E ++ ++ F E
Sbjct: 394 IIAHSNQK------------SAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDE-- 439
Query: 478 AAALRAANKSGTGFGESYSLANPSIRAGEDIPQPTIFNG----KLKGYQLKGMNWLANLY 533
+ N+S T + + R QP+ G +L+ YQL G+NWLA+ +
Sbjct: 440 ---YFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHEGLELRDYQLNGLNWLAHSW 496
Query: 534 EQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNNWHQEFTRFVPKF 593
+G + ILADEMGLGKT+Q+I+ L +L ++GPFL++ P STL +W +E + +
Sbjct: 497 CKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWASQM 556
Query: 594 KVLPYWGNPHDRKVIRRF-WSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLD 652
+ Y G+ + R +IR W+ T+ F++++T+Y+++++D + + W ++ +D
Sbjct: 557 NAVVYLGDINSRNMIRTHEWTHHQ--TKRLKFNILLTTYEILLKDKAFLGGLNWAFIGVD 614
Query: 653 EAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEW 712
EA LK+ S+ +K L+ F+ +RLL+TGTP+QN++ ELW+LLHFIMP F S E+F
Sbjct: 615 EAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFE-- 672
Query: 713 FSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQK 772
E H + + E + LH L+PF+LRR+KKDVE L K+E ++ ++++ QK
Sbjct: 673 -----EEHGKGR----EYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQK 723
Query: 773 LLYQALKNKISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNH 818
Y+ + + + + L + S GS TS +N++M+ +K CNH
Sbjct: 724 QYYKWILTR-NYKALSKGSKGS-------TSGFLNIMMELKKCCNH 761
Score = 175 bits (443), Expect = 3e-43
Identities = 107/249 (42%), Positives = 147/249 (59%), Gaps = 16/249 (6%)
Query: 1081 PQNGWSFIRIPGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYR 1140
P N + + + LI SGKL LD LL RL+ +G+RVLI+SQM RM+D+L EY+ YR
Sbjct: 768 PDNNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYR 827
Query: 1141 KHTYMRLDGSSKISERRDMVADFQNR-NDIFVFLLSTRAGGLGINLTAADTVIFYDSDWN 1199
+ + RLDGS K R+ + F ++ F FLLSTRAGGLGINL +ADTV+ +DSDWN
Sbjct: 828 QFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWN 887
Query: 1200 PTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVI---------- 1249
P D QA RAHR+GQ KQV +YRL+ KG++EE IL+RAK+K + +VI
Sbjct: 888 PQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTV 947
Query: 1250 --SGGNFKPDTLKPKEVVSLLL--DDEELEKKLRLRQEEKRQQEETNRVKERKRKREKYA 1305
+G T KE +S +L EEL K+ +E++ Q+ + + + +R E
Sbjct: 948 LHTGSAPSSSTPFNKEELSAILKFGAEELFKEPE-GEEQEPQEMDIDEILKRAETHENEP 1006
Query: 1306 EKKKKEDEL 1314
DEL
Sbjct: 1007 GPLTVGDEL 1015
Score = 33.1 bits (74), Expect = 2.1
Identities = 34/144 (23%), Positives = 56/144 (38%), Gaps = 17/144 (11%)
Query: 51 SEDGLDDSNPLLPQSGDPLIQVKEEPPNSLLGETSGAGSSGMLNTYSLNGVLQSESKCDK 110
S G ++ + S D +VK + + SG+GS + S + + +S CD+
Sbjct: 118 SNSGSEEDSSSSEDSDDSSSEVKRKKHKDEDWQMSGSGSPSQSGSDSESEEEREKSSCDE 177
Query: 111 GNL-------------YNFSKLKKSRKWLKSILLSDESSEADSQSEDDDEEELNLSREEL 157
N SK K +K L +SSE D ED D ++ + R+
Sbjct: 178 TESDYEPKNKVKSRKPQNRSKSKNGKKILGQKKRQIDSSEEDDDEEDYDNDKRSSRRQAT 237
Query: 158 HNMLRLHKYKKLHQNKYSKDKELQ 181
N+ YK+ + K D L+
Sbjct: 238 VNV----SYKEDEEMKTDSDDLLE 257
>gi|148612870 chromodomain helicase DNA binding protein 1-like [Homo
sapiens]
Length = 897
Score = 211 bits (536), Expect = 6e-54
Identities = 122/328 (37%), Positives = 188/328 (57%), Gaps = 23/328 (7%)
Query: 506 EDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAEREN 565
+D+ Q + L+ YQL+G+NWLA + IL DEMGLGKT Q+IAL +LA R N
Sbjct: 34 QDLRQWGLTGIHLRSYQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALFIYLAGRLN 93
Query: 566 IWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFH 625
GPFLI+ P S L+NW +E RF P + Y G+ +R +++ Q++ FH
Sbjct: 94 DEGPFLILCPLSVLSNWKEEMQRFAPGLSCVTYAGDKEERACLQQD------LKQESRFH 147
Query: 626 VVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQ 685
V++T+Y++ ++D + + W +V+DEA LK+ SS+ K L +F LLLTGTPIQ
Sbjct: 148 VLLTTYEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSLLLTGTPIQ 207
Query: 686 NTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLR 745
N++ EL++LL F+ P LF S EE ++ + + E++SA S LH +L+PF+LR
Sbjct: 208 NSLQELYSLLSFVEPDLF-SKEEVGDFIQRYQDIEKESESA------SELHKLLQPFLLR 260
Query: 746 RIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQNTTSSL 805
R+K +V EL K E+++Y +++ QK Y+A +L + + + L
Sbjct: 261 RVKAEVATELPKKTEVVIYHGMSALQKKYYKA---------ILMKDLDAFENETAKKVKL 311
Query: 806 MNLVMQFRKVCNHPELFERQETWSPFHI 833
N++ Q RK +HP LF+ E PF +
Sbjct: 312 QNILSQLRKCVDHPYLFDGVEP-EPFEV 338
Score = 171 bits (434), Expect = 4e-42
Identities = 92/178 (51%), Positives = 122/178 (68%), Gaps = 1/178 (0%)
Query: 1094 ESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKI 1153
+ L SGKL+ LD LL L S GHRVL++SQMT+M+D+L++YM YR ++Y R+DGS +
Sbjct: 340 DHLTEASGKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRG 399
Query: 1154 SERRDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRL 1213
ER + +F + IFVFLLSTRAGG+G+NLTAADTVIF DSD+NP D QA RAHR+
Sbjct: 400 EERHLAIKNF-GQQPIFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRI 458
Query: 1214 GQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEVVSLLLDD 1271
GQ K V V RLI + T+EE + ++A K ++ M+I GG+F KP L L +
Sbjct: 459 GQNKSVKVIRLIGRDTVEEIVYRKAASKLQLTNMIIEGGHFTLGAQKPAADADLQLSE 516
>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
[Homo sapiens]
Length = 2000
Score = 203 bits (516), Expect = 1e-51
Identities = 135/405 (33%), Positives = 209/405 (51%), Gaps = 34/405 (8%)
Query: 439 QEDYDSNHFKAQALKNAENAYHIHQARTRSFDEDAKESRAAALRAANKSGTGFGESYSLA 498
Q ++ + + + +Y H R ED + R + G G S
Sbjct: 660 QSTWEEDEMNIPEYEEHKQSYWRH--RELIMGEDPAQPRKYKKKKKELQGDG-PPSSPTN 716
Query: 499 NPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLA 558
+P+++ T G L YQL+G+NWL + QG + ILADEMGLGKT+Q+I L
Sbjct: 717 DPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLY 776
Query: 559 HLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRR-------- 610
L + + GPFL+ +P ST+ NW +EF + PKF V+ Y G+ R +IR
Sbjct: 777 SLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDN 836
Query: 611 -----FWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRW 665
+ K FHV++TSY+L+ D ++W +V+DEA LK++ S +
Sbjct: 837 AIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFF 896
Query: 666 KILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKS 725
++L ++ ++LLLTGTP+QN + EL+ LL+F+ P F++ E F E F+ DI
Sbjct: 897 RVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFA-DISK------ 949
Query: 726 AIDENQLSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIE 785
E+Q+ +LH +L P MLRR+K DV + K E+++ +L+ QK Y+ + + + E
Sbjct: 950 ---EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTR-NFE 1005
Query: 786 DLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELFERQETWSP 830
L +S G Q SL+N++M +K CNHP LF SP
Sbjct: 1006 AL--NSRGGGNQV-----SLLNIMMDLKKCCNHPYLFPVAAMESP 1043
Score = 160 bits (405), Expect = 9e-39
Identities = 92/203 (45%), Positives = 126/203 (62%), Gaps = 7/203 (3%)
Query: 1095 SLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKIS 1154
+LI SGKL L +L +LK QGHRVLI+SQMT+M+DLLE+++ Y + Y R+DG +
Sbjct: 1054 ALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGA 1113
Query: 1155 ERRDMVADFQNRN-DIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRL 1213
R++ + F F FLLSTRAGGLGINL ADTVI +DSDWNP D QA RAHR+
Sbjct: 1114 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRI 1173
Query: 1214 GQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGG-NFKPDTLKPKEVVSLL-LDD 1271
GQ +V +YR + + ++EERI Q AK K + +V+ G K ++ +E+ +L
Sbjct: 1174 GQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFGT 1233
Query: 1272 EELEKKLRLRQEEKRQQEETNRV 1294
EEL K + E +EE + V
Sbjct: 1234 EELFKD----ENEGENKEEDSSV 1252
Score = 35.8 bits (81), Expect = 0.33
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 1462 GAKAGAAAASAAAYAAYGYNVSKGISASSPLQTS---LVRPAGLADFGPSSASSPLSSPL 1518
G+ A AAA+AAA AA VS +S+++P+ S + P AD P P+
Sbjct: 204 GSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPPALPPPPAADIQP----PPIRRAK 259
Query: 1519 SKGNNVPGNPKNLHMTSSLAPDSLVRKQGKGTNP 1552
+K PG+ + S PD + +GK P
Sbjct: 260 TKEGKGPGHKR--RSKSPRVPDGRKKLRGKKMAP 291
Score = 33.5 bits (75), Expect = 1.6
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 205 LGPKKKKFKEEKKLKAKLKKVKKKRRRDEELSSEESPRRHHHQTKVFAKFSHDAPPPGTK 264
LG KK+K +K+ + K K +K+++RD E E R ++ K + S PG K
Sbjct: 45 LGVKKRKRGPKKQKENKPGKPRKRKKRDSE--EEFGSERDEYREKSESGGSEYGTGPGRK 102
Query: 265 --KKHLSIEQLNARRRK 279
+KH ++ +RRK
Sbjct: 103 RRRKHREKKEKKTKRRK 119
>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
[Homo sapiens]
Length = 1966
Score = 203 bits (516), Expect = 1e-51
Identities = 135/405 (33%), Positives = 209/405 (51%), Gaps = 34/405 (8%)
Query: 439 QEDYDSNHFKAQALKNAENAYHIHQARTRSFDEDAKESRAAALRAANKSGTGFGESYSLA 498
Q ++ + + + +Y H R ED + R + G G S
Sbjct: 660 QSTWEEDEMNIPEYEEHKQSYWRH--RELIMGEDPAQPRKYKKKKKELQGDG-PPSSPTN 716
Query: 499 NPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLA 558
+P+++ T G L YQL+G+NWL + QG + ILADEMGLGKT+Q+I L
Sbjct: 717 DPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLY 776
Query: 559 HLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRR-------- 610
L + + GPFL+ +P ST+ NW +EF + PKF V+ Y G+ R +IR
Sbjct: 777 SLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDN 836
Query: 611 -----FWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRW 665
+ K FHV++TSY+L+ D ++W +V+DEA LK++ S +
Sbjct: 837 AIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFF 896
Query: 666 KILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKS 725
++L ++ ++LLLTGTP+QN + EL+ LL+F+ P F++ E F E F+ DI
Sbjct: 897 RVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFA-DISK------ 949
Query: 726 AIDENQLSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIE 785
E+Q+ +LH +L P MLRR+K DV + K E+++ +L+ QK Y+ + + + E
Sbjct: 950 ---EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTR-NFE 1005
Query: 786 DLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELFERQETWSP 830
L +S G Q SL+N++M +K CNHP LF SP
Sbjct: 1006 AL--NSRGGGNQV-----SLLNIMMDLKKCCNHPYLFPVAAMESP 1043
Score = 160 bits (405), Expect = 9e-39
Identities = 92/203 (45%), Positives = 126/203 (62%), Gaps = 7/203 (3%)
Query: 1095 SLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKIS 1154
+LI SGKL L +L +LK QGHRVLI+SQMT+M+DLLE+++ Y + Y R+DG +
Sbjct: 1054 ALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGA 1113
Query: 1155 ERRDMVADFQNRN-DIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRL 1213
R++ + F F FLLSTRAGGLGINL ADTVI +DSDWNP D QA RAHR+
Sbjct: 1114 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRI 1173
Query: 1214 GQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGG-NFKPDTLKPKEVVSLL-LDD 1271
GQ +V +YR + + ++EERI Q AK K + +V+ G K ++ +E+ +L
Sbjct: 1174 GQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFGT 1233
Query: 1272 EELEKKLRLRQEEKRQQEETNRV 1294
EEL K + E +EE + V
Sbjct: 1234 EELFKD----ENEGENKEEDSSV 1252
Score = 35.8 bits (81), Expect = 0.33
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 1462 GAKAGAAAASAAAYAAYGYNVSKGISASSPLQTS---LVRPAGLADFGPSSASSPLSSPL 1518
G+ A AAA+AAA AA VS +S+++P+ S + P AD P P+
Sbjct: 204 GSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPPALPPPPAADIQP----PPIRRAK 259
Query: 1519 SKGNNVPGNPKNLHMTSSLAPDSLVRKQGKGTNP 1552
+K PG+ + S PD + +GK P
Sbjct: 260 TKEGKGPGHKR--RSKSPRVPDGRKKLRGKKMAP 291
Score = 33.5 bits (75), Expect = 1.6
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 205 LGPKKKKFKEEKKLKAKLKKVKKKRRRDEELSSEESPRRHHHQTKVFAKFSHDAPPPGTK 264
LG KK+K +K+ + K K +K+++RD E E R ++ K + S PG K
Sbjct: 45 LGVKKRKRGPKKQKENKPGKPRKRKKRDSE--EEFGSERDEYREKSESGGSEYGTGPGRK 102
Query: 265 --KKHLSIEQLNARRRK 279
+KH ++ +RRK
Sbjct: 103 RRRKHREKKEKKTKRRK 119
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 203 bits (516), Expect = 1e-51
Identities = 135/405 (33%), Positives = 209/405 (51%), Gaps = 34/405 (8%)
Query: 439 QEDYDSNHFKAQALKNAENAYHIHQARTRSFDEDAKESRAAALRAANKSGTGFGESYSLA 498
Q ++ + + + +Y H R ED + R + G G S
Sbjct: 719 QSTWEEDEMNIPEYEEHKQSYWRH--RELIMGEDPAQPRKYKKKKKELQGDG-PPSSPTN 775
Query: 499 NPSIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLA 558
+P+++ T G L YQL+G+NWL + QG + ILADEMGLGKT+Q+I L
Sbjct: 776 DPTVKYETQPRFITATGGTLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVFLY 835
Query: 559 HLAERENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRR-------- 610
L + + GPFL+ +P ST+ NW +EF + PKF V+ Y G+ R +IR
Sbjct: 836 SLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYVVTYTGDKDSRAIIRENEFSFEDN 895
Query: 611 -----FWSQKTLYTQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRW 665
+ K FHV++TSY+L+ D ++W +V+DEA LK++ S +
Sbjct: 896 AIKGGKKAFKMKREAQVKFHVLLTSYELITIDQAALGSIRWACLVVDEAHRLKNNQSKFF 955
Query: 666 KILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKS 725
++L ++ ++LLLTGTP+QN + EL+ LL+F+ P F++ E F E F+ DI
Sbjct: 956 RVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFA-DISK------ 1008
Query: 726 AIDENQLSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIE 785
E+Q+ +LH +L P MLRR+K DV + K E+++ +L+ QK Y+ + + + E
Sbjct: 1009 ---EDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTR-NFE 1064
Query: 786 DLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELFERQETWSP 830
L +S G Q SL+N++M +K CNHP LF SP
Sbjct: 1065 AL--NSRGGGNQV-----SLLNIMMDLKKCCNHPYLFPVAAMESP 1102
Score = 160 bits (405), Expect = 9e-39
Identities = 92/203 (45%), Positives = 126/203 (62%), Gaps = 7/203 (3%)
Query: 1095 SLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKIS 1154
+LI SGKL L +L +LK QGHRVLI+SQMT+M+DLLE+++ Y + Y R+DG +
Sbjct: 1113 ALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGA 1172
Query: 1155 ERRDMVADFQNRN-DIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRL 1213
R++ + F F FLLSTRAGGLGINL ADTVI +DSDWNP D QA RAHR+
Sbjct: 1173 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRI 1232
Query: 1214 GQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGG-NFKPDTLKPKEVVSLL-LDD 1271
GQ +V +YR + + ++EERI Q AK K + +V+ G K ++ +E+ +L
Sbjct: 1233 GQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILKFGT 1292
Query: 1272 EELEKKLRLRQEEKRQQEETNRV 1294
EEL K + E +EE + V
Sbjct: 1293 EELFKD----ENEGENKEEDSSV 1311
Score = 35.8 bits (81), Expect = 0.33
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 1462 GAKAGAAAASAAAYAAYGYNVSKGISASSPLQTS---LVRPAGLADFGPSSASSPLSSPL 1518
G+ A AAA+AAA AA VS +S+++P+ S + P AD P P+
Sbjct: 263 GSAAAVAAAAAAAAAAVAEQVSAAVSSATPIAPSGPPALPPPPAADIQP----PPIRRAK 318
Query: 1519 SKGNNVPGNPKNLHMTSSLAPDSLVRKQGKGTNP 1552
+K PG+ + S PD + +GK P
Sbjct: 319 TKEGKGPGHKR--RSKSPRVPDGRKKLRGKKMAP 350
Score = 33.5 bits (75), Expect = 1.6
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 205 LGPKKKKFKEEKKLKAKLKKVKKKRRRDEELSSEESPRRHHHQTKVFAKFSHDAPPPGTK 264
LG KK+K +K+ + K K +K+++RD E E R ++ K + S PG K
Sbjct: 104 LGVKKRKRGPKKQKENKPGKPRKRKKRDSE--EEFGSERDEYREKSESGGSEYGTGPGRK 161
Query: 265 --KKHLSIEQLNARRRK 279
+KH ++ +RRK
Sbjct: 162 RRRKHREKKEKKTKRRK 178
>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
sapiens]
Length = 1954
Score = 201 bits (511), Expect = 5e-51
Identities = 121/320 (37%), Positives = 181/320 (56%), Gaps = 31/320 (9%)
Query: 516 GKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISP 575
G L YQL+G+NWL + QG + ILADEMGLGKTVQ+I L L + + GP+L+ +P
Sbjct: 698 GTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAP 757
Query: 576 ASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRR---------FWSQKTLYTQ----DA 622
ST+ NW +EF + P F V+ Y G+ R VIR S K ++
Sbjct: 758 LSTIINWEREFEMWAPDFYVVTYTGDKESRSVIRENEFSFEDNAIRSGKKVFRMKKEVQI 817
Query: 623 PFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGT 682
FHV++TSY+L+ D ++W +V+DEA LK++ S +++L ++ +LLLTGT
Sbjct: 818 KFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGT 877
Query: 683 PIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPF 742
P+QN + EL+ LL+F+ P F++ E F E F+ DI E+Q+ +LH +L P
Sbjct: 878 PLQNNLEELFHLLNFLTPERFNNLEGFLEEFA-DISK---------EDQIKKLHDLLGPH 927
Query: 743 MLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQNTT 802
MLRR+K DV + K E+++ +L+ QK Y+ + + + L S G Q
Sbjct: 928 MLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNF--EALNSKGGGNQ------ 979
Query: 803 SSLMNLVMQFRKVCNHPELF 822
SL+N++M +K CNHP LF
Sbjct: 980 VSLLNIMMDLKKCCNHPYLF 999
Score = 160 bits (406), Expect = 7e-39
Identities = 88/185 (47%), Positives = 119/185 (64%), Gaps = 3/185 (1%)
Query: 1095 SLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKIS 1154
SL+ SGKL L +L +L+ +GHRVLI+SQMT+M+DLLE+++ Y + Y R+DG
Sbjct: 1018 SLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGG 1077
Query: 1155 ERRDMVADFQNRN-DIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRL 1213
R++ + F F FLLSTRAGGLGINL ADTVI YDSDWNP D QA RAHR+
Sbjct: 1078 LRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRI 1137
Query: 1214 GQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGG-NFKPDTLKPKEVVSLL-LDD 1271
GQ K+V +YR + + ++EERI Q AK K + +V+ G K ++ +E+ +L
Sbjct: 1138 GQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGT 1197
Query: 1272 EELEK 1276
EEL K
Sbjct: 1198 EELFK 1202
Score = 33.9 bits (76), Expect = 1.3
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 189 GLLSTYDPFYEQQRHLLGPKKKKFKEEKKLKAKLKKVKKKRRRDEELSSEESPRRHHHQT 248
G L +D F+ + L PKKKK K K K K K KR++ E + E S +
Sbjct: 31 GGLEAFDDFFPVEPVSL-PKKKKPK-----KLKENKCKGKRKKKEGSNDELSENEEDLEE 84
Query: 249 KVFAKFSHDAPPPGTKKKHLSIEQLNARRRK 279
K ++ S +P KKK ++ A+R+K
Sbjct: 85 KSESEGSDYSPNKKKKKKLKDKKEKKAKRKK 115
Score = 33.5 bits (75), Expect = 1.6
Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 21/116 (18%)
Query: 130 LLSDESSEADSQSEDDDE-----------EELNLSREELHNMLRLHKYKKLHQNKYSKDK 178
L ++E D SE++D E ++L +++ L+ +K K + K +
Sbjct: 14 LFAEEMENEDEMSEEEDGGLEAFDDFFPVEPVSLPKKKKPKKLKENKCKGKRKKKEGSND 73
Query: 179 ELQQYQYYSAGLLSTYDPFYEQQRHLLGPKKKKFKEEKKLKAKLKKVKKKRRRDEE 234
EL + + + E + P KKK +KKLK K +K K++++DE+
Sbjct: 74 ELSENE-------EDLEEKSESEGSDYSPNKKK---KKKLKDKKEKKAKRKKKDED 119
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 196 bits (497), Expect = 2e-49
Identities = 117/317 (36%), Positives = 180/317 (56%), Gaps = 24/317 (7%)
Query: 515 NGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIIS 574
N KL+ YQL+G+NWL + N ILADEMGLGKT+QSI L + + I GPFL+I+
Sbjct: 965 NNKLREYQLEGVNWLLFNWYNMRNCILADEMGLGKTIQSITFLYEIYLK-GIHGPFLVIA 1023
Query: 575 PASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFWS-----QKTLYTQDAPFHVVIT 629
P ST+ NW +EF + + V+ Y G+ R+ I+ + Q + FH +IT
Sbjct: 1024 PLSTIPNWEREFRTWT-ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGSYKFHAIIT 1082
Query: 630 SYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNTMA 689
++++++ D + + W+ +V+DEA LK+ + + L +++LLTGTP+QNT+
Sbjct: 1083 TFEMILTDCPELRNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVE 1142
Query: 690 ELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRIKK 749
EL++LLHF+ P+ F S F + F D+++ E Q+ +L ILKP MLRR+K+
Sbjct: 1143 ELFSLLHFLEPSRFPSETTFMQEFG-DLKT---------EEQVQKLQAILKPMMLRRLKE 1192
Query: 750 DVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQNTTSSLMNLV 809
DVE L+ K E ++ +LT+ QK Y+A+ K + S Q +L+N +
Sbjct: 1193 DVEKNLAPKEETIIEVELTNIQKKYYRAILEK-------NFTFLSKGGGQANVPNLLNTM 1245
Query: 810 MQFRKVCNHPELFERQE 826
M+ RK CNHP L E
Sbjct: 1246 MELRKCCNHPYLINGAE 1262
Score = 152 bits (385), Expect = 2e-36
Identities = 81/182 (44%), Positives = 117/182 (64%), Gaps = 7/182 (3%)
Query: 1094 ESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKI 1153
+++I +GKL +D LL +LK+ GHRVLI+SQM R +D+LE+Y++ R++ Y R+DG +
Sbjct: 1283 QAMIQAAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRG 1342
Query: 1154 SERRDMVADFQNRN-DIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHR 1212
+ R+ + F + D FVFLL TRAGGLGINLTAADT I +DSDWNP D QA R HR
Sbjct: 1343 NLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHR 1402
Query: 1213 LGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDT------LKPKEVVS 1266
+GQ+K V +YRLI + + E + +A K + + V+ + + + L KE+
Sbjct: 1403 IGQSKSVKIYRLITRNSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIED 1462
Query: 1267 LL 1268
LL
Sbjct: 1463 LL 1464
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 196 bits (497), Expect = 2e-49
Identities = 181/661 (27%), Positives = 310/661 (46%), Gaps = 84/661 (12%)
Query: 211 KFKEEKKLKAKLKKVKKKRRRDEELSSEESPRRHHHQTKVFAKFSHDAPPPGTKKKHLSI 270
K KE+ K+ + + KK++R E S E S Q + + S K+
Sbjct: 587 KLKEKTKIGKLIITLGKKQKRKNESSDEISDAEQMPQHTLKDQDSQKRRSNRQIKRKKYA 646
Query: 271 EQLNARRR----KVWLSIVKKELPKANKQKASARNLFLTNSRKLAHQCMKEVRRAALQAQ 326
E + ++ K + I K P +Q LF+ N + + ++ L ++
Sbjct: 647 EDIEGKQSEEEVKGSMKIKKNSAPLPGEQPLQ---LFVENPSEEDAAIVDKI----LSSR 699
Query: 327 KNCKETLPRARRLTKEMLLYWKKYEKVEKEHRKRAEKEALEQRKLDEEMREAKRQQRKLN 386
KE P T+E + +K Y + E E++ L+ +++ ++++ K +Q +
Sbjct: 700 TVKKEISPGVMIDTEEFFVKYKNYSYLHCEWA--TEEQLLKDKRIQQKIKRFKLRQAQR- 756
Query: 387 FLITQTELYAHFMSRKRDMGHDGIQEEILRKLEDSSTQRQIDIGGGVVVNITQEDYDSNH 446
AHF + + + E+ R LE S + + D G V+ +
Sbjct: 757 ---------AHFFADMEEEPFNPDYVEVDRVLEVSFCEDK-DTGEPVIYYLV-------- 798
Query: 447 FKAQALKNAENAYHIHQARTRSFDED-AKESRAAALRAANKSGTGFGESYSLANPSIRAG 505
K +L ++ + + + D D AK L+A+ ++ L P
Sbjct: 799 -KWCSLPYEDSTWELKE------DVDLAKIEEFEQLQASRP------DTRRLDRPPSNIW 845
Query: 506 EDIPQPTIF-NG-KLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAER 563
+ I Q + NG +L+ YQL+G+NWL + N ILADEMGLGKT+QSI L +
Sbjct: 846 KKIDQSRDYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEIL-L 904
Query: 564 ENIWGPFLIISPASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFW-----SQKTLY 618
I GPFLII+P ST+ NW +EF + V+ Y G+ R++I+++ SQ +
Sbjct: 905 TGIRGPFLIIAPLSTIANWEREFRTWTD-INVVVYHGSLISRQMIQQYEMYFRDSQGRII 963
Query: 619 TQDAPFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLL 678
F +IT++++++ ++W+ +++DEA LK+ + + L +++L
Sbjct: 964 RGAYRFQAIITTFEMILGGCGELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKVL 1023
Query: 679 LTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMI 738
LTGTP+QNT+ EL++LLHF+ P F S F + F D+++ E Q+ +L I
Sbjct: 1024 LTGTPLQNTVEELFSLLHFLEPLRFPSESTFMQEFG-DLKT---------EEQVQKLQAI 1073
Query: 739 LKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQA 798
LKP MLRR+K+DVE +L+ K E ++ +LT+ QK Y+A+ K S S
Sbjct: 1074 LKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEK-------NFSFLSKGAG 1126
Query: 799 QNTTSSLMNLVMQFRKVCNHPELF---------ERQETWSPFHISLKPYHISKFIYRHGQ 849
Q +L+N +M+ RK CNHP L E ++T++P + +H+ I G+
Sbjct: 1127 QTNVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNP---AASDFHLQAMIQSAGK 1183
Query: 850 I 850
+
Sbjct: 1184 L 1184
Score = 152 bits (383), Expect = 3e-36
Identities = 89/249 (35%), Positives = 143/249 (57%), Gaps = 6/249 (2%)
Query: 1094 ESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKI 1153
+++I +GKL +D LL ++K+ GH+VLI+SQM R +D+LE+Y++++++ Y R+DG +
Sbjct: 1175 QAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRG 1234
Query: 1154 SERRDMVADFQNRN-DIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHR 1212
+ R+ + F + D FVFLL TRAGGLGINLTAADT I +DSDWNP D QA R HR
Sbjct: 1235 NLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHR 1294
Query: 1213 LGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEVVSLLLDDE 1272
+GQ K V VYRL+ + + E + RA K + + V+ + + + + +S +
Sbjct: 1295 IGQNKAVKVYRLVTRNSYEREMFDRASLKLGLDKAVLQSMSGRESNVGGIQQLS----KK 1350
Query: 1273 ELEKKLRLRQEEKRQQEETNRVKERKRKREKYAEKKKKEDELDGKRRKEGVNLVIPFVPS 1332
E+E LR +EE K + ++ ++ K ++ + R FV S
Sbjct: 1351 EIEDLLRRGAYGAIMEEEDEGSKFCEEDIDQILLRRTKTITIESEGR-GSTFAKASFVAS 1409
Query: 1333 ADNSNLSAD 1341
+ +++S D
Sbjct: 1410 GNRTDISLD 1418
Score = 32.3 bits (72), Expect = 3.7
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 15/97 (15%)
Query: 1227 KGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEVVSLLLDDEELEKKLRLRQEEKR 1286
K + + + + KEK++I +++I+ G + K K S + D E ++ Q +
Sbjct: 577 KDSKKTKTCSKLKEKTKIGKLIITLGKKQ----KRKNESSDEISDAE-----QMPQHTLK 627
Query: 1287 QQEETNRVKERKRKREKYAEKKKKEDELDGKRRKEGV 1323
Q+ R R+ KR+KYAE +++GK+ +E V
Sbjct: 628 DQDSQKRRSNRQIKRKKYAE------DIEGKQSEEEV 658
>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
sapiens]
Length = 1912
Score = 195 bits (495), Expect = 3e-49
Identities = 118/320 (36%), Positives = 183/320 (57%), Gaps = 31/320 (9%)
Query: 516 GKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISP 575
G L YQ++G+NWL + QG + ILADEMGLGKTVQ+ L L + + GPFL+ +P
Sbjct: 724 GTLHPYQMEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLYSLYKEGHSKGPFLVSAP 783
Query: 576 ASTLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIR-----------RFWSQKTLYTQDA-- 622
ST+ NW +EF + P V+ Y G+ R +IR R + + ++A
Sbjct: 784 LSTIINWEREFEMWAPDMYVVTYVGDKDSRAIIRENEFSFEDNAIRGGKKASRMKKEASV 843
Query: 623 PFHVVITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGT 682
FHV++TSY+L+ D+ + W +++DEA LK++ S +++L + +++LLLTGT
Sbjct: 844 KFHVLLTSYELITIDMAILGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGT 903
Query: 683 PIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPF 742
P+QN + EL+ LL+F+ P F + E F E F+ DI E+Q+ +LH +L P
Sbjct: 904 PLQNNLEELFHLLNFLTPERFHNLEGFLEEFA-DIAK---------EDQIKKLHDMLGPH 953
Query: 743 MLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQNTT 802
MLRR+K DV + K E+++ +L+ QK Y+ + + + E L ++ G Q
Sbjct: 954 MLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTR-NFEAL--NARGGGNQV---- 1006
Query: 803 SSLMNLVMQFRKVCNHPELF 822
SL+N+VM +K CNHP LF
Sbjct: 1007 -SLLNVVMDLKKCCNHPYLF 1025
Score = 157 bits (398), Expect = 6e-38
Identities = 88/185 (47%), Positives = 119/185 (64%), Gaps = 3/185 (1%)
Query: 1095 SLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKIS 1154
+LI SGKL L +L LK GHRVLI+SQMT+M+DLLE+++ + + Y R+DG +
Sbjct: 1044 ALIRASGKLLLLQKMLKNLKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGN 1103
Query: 1155 ERRDMVADFQNRN-DIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRL 1213
R++ + F F FLLSTRAGGLGINL ADTVI YDSDWNP D QA RAHR+
Sbjct: 1104 MRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRI 1163
Query: 1214 GQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGG-NFKPDTLKPKEVVSLL-LDD 1271
GQ K+V +YR + + ++EERI Q AK+K + +V+ G K ++ +E+ +L
Sbjct: 1164 GQNKKVMIYRFVTRASVEERITQVAKKKMMLTHLVVRPGLGSKTGSMSKQELDDILKFGT 1223
Query: 1272 EELEK 1276
EEL K
Sbjct: 1224 EELFK 1228
Score = 31.2 bits (69), Expect = 8.2
Identities = 20/91 (21%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 1236 QRAKEKSEIQRMVISGGNFKPDTLKPKEVVSLLLDDEELEKKLRLRQEEKRQQEETNRVK 1295
++ KE+ + R + P+ ++ +E V+L D E + K+++++ K
Sbjct: 70 RQKKERMLLCRQLGDSSGEGPEFVEEEEEVALRSDSEGSDYT-----PGKKKKKKLGPKK 124
Query: 1296 ERKRKREKYAEKKKKEDELDGKRRKEGVNLV 1326
E+K K ++ E+++++D+ D K K L+
Sbjct: 125 EKKSKSKRKEEEEEEDDDDDSKEPKSSAQLL 155
>gi|114326455 chromodomain helicase DNA binding protein 8 [Homo
sapiens]
Length = 2302
Score = 193 bits (490), Expect = 1e-48
Identities = 115/319 (36%), Positives = 182/319 (57%), Gaps = 32/319 (10%)
Query: 517 KLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPA 576
+L+ YQL+G+NWL + N ILADEMGLGKT+QSIA L + I GPFL+I+P
Sbjct: 531 QLREYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSIAFLQEVYN-VGIHGPFLVIAPL 589
Query: 577 STLNNWHQEFTRFVPKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDA---------PFHVV 627
ST+ NW +EF + + + Y G+ R++I+++ +Y +D+ F +
Sbjct: 590 STITNWEREFNTWT-EMNTIVYHGSLASRQMIQQY----EMYCKDSRGRLIPGAYKFDAL 644
Query: 628 ITSYQLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPIQNT 687
IT++++++ D + ++W+ +++DEA LK+ + L +++LLTGTP+QNT
Sbjct: 645 ITTFEMILSDCPELREIEWRCVIIDEAHRLKNRNCKLLDSLKHMDLEHKVLLTGTPLQNT 704
Query: 688 MAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAENKSAIDENQLSRLHMILKPFMLRRI 747
+ EL++LLHF+ P+ F S EF + F D+++ E Q+ +L ILKP MLRR+
Sbjct: 705 VEELFSLLHFLEPSQFPSESEFLKDFG-DLKT---------EEQVQKLQAILKPMMLRRL 754
Query: 748 KKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQNTTSSLMN 807
K+DVE L+ K E ++ +LT+ QK Y+A+ K S S +L+N
Sbjct: 755 KEDVEKNLAPKQETIIEVELTNIQKKYYRAILEK-------NFSFLSKGAGHTNMPNLLN 807
Query: 808 LVMQFRKVCNHPELFERQE 826
+M+ RK CNHP L E
Sbjct: 808 TMMELRKCCNHPYLINGAE 826
Score = 151 bits (381), Expect = 5e-36
Identities = 75/157 (47%), Positives = 108/157 (68%), Gaps = 1/157 (0%)
Query: 1094 ESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKI 1153
++++ +GKL +D LL +LK+ GH+VLI+SQM R +D+LE+Y++ R++ Y R+DG +
Sbjct: 847 QAMVRSAGKLVLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRG 906
Query: 1154 SERRDMVADFQNRN-DIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHR 1212
+ R+ + F + D FVFLL TRAGGLGINLTAADT I +DSDWNP D QA R HR
Sbjct: 907 NLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHR 966
Query: 1213 LGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVI 1249
+GQ+K V VYRLI + + E + +A K + + V+
Sbjct: 967 IGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVL 1003
Score = 36.6 bits (83), Expect = 0.19
Identities = 33/162 (20%), Positives = 68/162 (41%), Gaps = 14/162 (8%)
Query: 1228 GTIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEVVSLLLDDEELEKKLRLRQEEKRQ 1287
G E R L+ K++ + R+V + ++ + +L+++EL R
Sbjct: 166 GMEENRRLEHQKKQEKANRIVAEA--IARARARGEQNIPRVLNEDELPSV--------RP 215
Query: 1288 QEETNRVKERKRKREKYAEKKKKEDELDGKRRKEG---VNLVIPFVPSADNSNLSADGDD 1344
+EE + + +K E+ E+K K+ + G + +G +N + P V N S+D D
Sbjct: 216 EEEGEKKRRKKSAGERLKEEKPKKSKTSGASKTKGKSKLNTITPVVGKKRKRNTSSDNSD 275
Query: 1345 SFISVDSAMPSPFSEISISSELHTGSIPLDESSSDMLVIVDD 1386
+ + + P E SI + + + D+ + + D
Sbjct: 276 VEV-MPAQSPREDEESSIQKRRSNRQVKRKKYTEDLDIKITD 316
Score = 34.7 bits (78), Expect = 0.74
Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 14/133 (10%)
Query: 304 LTNSRKLAHQCMKE-----VRRAALQAQKNCKETLPRARRLTKEMLLYWKKYEKVEKEHR 358
+ +R+L HQ +E V A +A+ ++ +PR L ++ L + E+ EK+ R
Sbjct: 167 MEENRRLEHQKKQEKANRIVAEAIARARARGEQNIPRV--LNEDELPSVRPEEEGEKKRR 224
Query: 359 KRAEKEALEQRKLDEEMREAKRQQRKLNFLITQTELYAHFMSRKRDMGHDGIQEEIL--- 415
K++ E L++ K + + + + L T T + RKR+ D E++
Sbjct: 225 KKSAGERLKEEKPKKSKTSGASKTKGKSKLNTITPVVG--KKRKRNTSSDNSDVEVMPAQ 282
Query: 416 --RKLEDSSTQRQ 426
R+ E+SS Q++
Sbjct: 283 SPREDEESSIQKR 295
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.131 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,054,811
Number of Sequences: 37866
Number of extensions: 2854173
Number of successful extensions: 34620
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 660
Number of HSP's that attempted gapping in prelim test: 20675
Number of HSP's gapped (non-prelim): 10023
length of query: 1556
length of database: 18,247,518
effective HSP length: 116
effective length of query: 1440
effective length of database: 13,855,062
effective search space: 19951289280
effective search space used: 19951289280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 69 (31.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.