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Search of human proteins with 38679902
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38679902 transmembrane protein 44 isoform a [Homo sapiens]
(439 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38679902 transmembrane protein 44 isoform a [Homo sapiens] 886 0.0
gi|58533182 transmembrane protein 44 isoform b [Homo sapiens] 854 0.0
gi|92110021 PQ loop repeat containing 2 isoform 1 [Homo sapiens] 53 5e-07
gi|92110025 PQ loop repeat containing 2 isoform 1 [Homo sapiens] 53 5e-07
gi|92110023 PQ loop repeat containing 2 isoform 2 [Homo sapiens] 48 2e-05
gi|46195763 metastasis suppressor 1-like [Homo sapiens] 33 0.67
gi|23308699 transcription factor MAFB [Homo sapiens] 32 0.88
gi|206597543 hypothetical protein LOC118461 isoform 1 [Homo sapi... 32 1.5
gi|155029548 phosphofurin acidic cluster sorting protein 2 isofo... 31 1.9
gi|155029546 phosphofurin acidic cluster sorting protein 2 isofo... 31 1.9
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 30 4.3
gi|7662058 tectonin beta-propeller repeat containing 2 [Homo sap... 30 5.7
gi|170784831 chromosome 1 open reading frame 9 protein isoform 2... 30 5.7
gi|7656940 chromosome 1 open reading frame 9 protein isoform 1 [... 30 5.7
gi|22749415 integral membrane protein 1 [Homo sapiens] 29 7.4
gi|38683799 ankyrin repeat domain 13 [Homo sapiens] 29 7.4
gi|38176300 nestin [Homo sapiens] 29 9.7
gi|169214254 PREDICTED: transmembrane protein 221 [Homo sapiens] 29 9.7
gi|169213600 PREDICTED: transmembrane protein 221 [Homo sapiens] 29 9.7
gi|226442779 jumonji domain containing 1A [Homo sapiens] 29 9.7
gi|20357522 jumonji domain containing 1A [Homo sapiens] 29 9.7
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 29 9.7
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 29 9.7
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 29 9.7
gi|49640014 ubiquitin associated and SH3 domain containing, A sh... 29 9.7
gi|9507221 ubiquitin associated and SH3 domain containing, A lon... 29 9.7
gi|27754773 protocadherin 1 isoform 2 precursor [Homo sapiens] 29 9.7
gi|52353340 olfactory receptor, family 56, subfamily B, member 1... 29 9.7
>gi|38679902 transmembrane protein 44 isoform a [Homo sapiens]
Length = 439
Score = 886 bits (2289), Expect = 0.0
Identities = 439/439 (100%), Positives = 439/439 (100%)
Query: 1 MGEAPSPAPALWDWDYLDRCFARHRVCISFGLWICASSCWIAAHALLLYLRCAQKPRQDQ 60
MGEAPSPAPALWDWDYLDRCFARHRVCISFGLWICASSCWIAAHALLLYLRCAQKPRQDQ
Sbjct: 1 MGEAPSPAPALWDWDYLDRCFARHRVCISFGLWICASSCWIAAHALLLYLRCAQKPRQDQ 60
Query: 61 SALCAACCLLTSLCDTVGALLARQLTIQVFTGAYLAAIDLVNFMFILFPVCGSKFKSNSD 120
SALCAACCLLTSLCDTVGALLARQLTIQVFTGAYLAAIDLVNFMFILFPVCGSKFKSNSD
Sbjct: 61 SALCAACCLLTSLCDTVGALLARQLTIQVFTGAYLAAIDLVNFMFILFPVCGSKFKSNSD 120
Query: 121 REARERKRRRQLRASVFALALPLSLGPCWALWVAVPKASATIRGPQRRLLASLLQENTEI 180
REARERKRRRQLRASVFALALPLSLGPCWALWVAVPKASATIRGPQRRLLASLLQENTEI
Sbjct: 121 REARERKRRRQLRASVFALALPLSLGPCWALWVAVPKASATIRGPQRRLLASLLQENTEI 180
Query: 181 LGYLLGSVAAFGSWASRIPPLSRICRGKTFPSIHLWTRLLSALAGLLYASAIVAHDQHPE 240
LGYLLGSVAAFGSWASRIPPLSRICRGKTFPSIHLWTRLLSALAGLLYASAIVAHDQHPE
Sbjct: 181 LGYLLGSVAAFGSWASRIPPLSRICRGKTFPSIHLWTRLLSALAGLLYASAIVAHDQHPE 240
Query: 241 YLLRATPWFLTSLGRAALDLAIIFLSCVMKSKMRQALGFAKEARESPDTQALLTCAEKEE 300
YLLRATPWFLTSLGRAALDLAIIFLSCVMKSKMRQALGFAKEARESPDTQALLTCAEKEE
Sbjct: 241 YLLRATPWFLTSLGRAALDLAIIFLSCVMKSKMRQALGFAKEARESPDTQALLTCAEKEE 300
Query: 301 ENQENLDWVPLTTLSHCKSLRTMTAISRYMELTIEPVQQAGCSATRLPGDGQTSAGDASL 360
ENQENLDWVPLTTLSHCKSLRTMTAISRYMELTIEPVQQAGCSATRLPGDGQTSAGDASL
Sbjct: 301 ENQENLDWVPLTTLSHCKSLRTMTAISRYMELTIEPVQQAGCSATRLPGDGQTSAGDASL 360
Query: 361 QDPPSYPPVQVIRARVSSGSSSEVSSINSDLEQKYWEALNSEQWDPEDVNLEGSKENVEL 420
QDPPSYPPVQVIRARVSSGSSSEVSSINSDLEQKYWEALNSEQWDPEDVNLEGSKENVEL
Sbjct: 361 QDPPSYPPVQVIRARVSSGSSSEVSSINSDLEQKYWEALNSEQWDPEDVNLEGSKENVEL 420
Query: 421 LGSQVHQDSVRTAHLSDDD 439
LGSQVHQDSVRTAHLSDDD
Sbjct: 421 LGSQVHQDSVRTAHLSDDD 439
>gi|58533182 transmembrane protein 44 isoform b [Homo sapiens]
Length = 428
Score = 854 bits (2206), Expect = 0.0
Identities = 428/439 (97%), Positives = 428/439 (97%), Gaps = 11/439 (2%)
Query: 1 MGEAPSPAPALWDWDYLDRCFARHRVCISFGLWICASSCWIAAHALLLYLRCAQKPRQDQ 60
MGEAPSPAPALWDWDYLDRCFARHRVCISFGLWICASSCWIAAHALLLYLRCAQKPRQDQ
Sbjct: 1 MGEAPSPAPALWDWDYLDRCFARHRVCISFGLWICASSCWIAAHALLLYLRCAQKPRQDQ 60
Query: 61 SALCAACCLLTSLCDTVGALLARQLTIQVFTGAYLAAIDLVNFMFILFPVCGSKFKSNSD 120
SALCAACCLLTSLCDTVGALLARQLTIQVFTGAYLAAIDLVNFMFILFPVCGSKFKSNSD
Sbjct: 61 SALCAACCLLTSLCDTVGALLARQLTIQVFTGAYLAAIDLVNFMFILFPVCGSKFKSNSD 120
Query: 121 REARERKRRRQLRASVFALALPLSLGPCWALWVAVPKASATIRGPQRRLLASLLQENTEI 180
REARERKRRRQLRASVFALALPLSLGPCWALWVAVPKASATIRGPQRRLLASLLQENTEI
Sbjct: 121 REARERKRRRQLRASVFALALPLSLGPCWALWVAVPKASATIRGPQRRLLASLLQENTEI 180
Query: 181 LGYLLGSVAAFGSWASRIPPLSRICRGKTFPSIHLWTRLLSALAGLLYASAIVAHDQHPE 240
LGYLLGSVAAFGSWASRIPPLSRICRGKTFPSIHLWTRLLSALAGLLYASAIVAHDQHPE
Sbjct: 181 LGYLLGSVAAFGSWASRIPPLSRICRGKTFPSIHLWTRLLSALAGLLYASAIVAHDQHPE 240
Query: 241 YLLRATPWFLTSLGRAALDLAIIFLSCVMKSKMRQALGFAKEARESPDTQALLTCAEKEE 300
YLLRATPWFLTSLGRAALDLAIIFLSCVMKSKMRQALGFAKEARESPDTQALLTCAEKEE
Sbjct: 241 YLLRATPWFLTSLGRAALDLAIIFLSCVMKSKMRQALGFAKEARESPDTQALLTCAEKEE 300
Query: 301 ENQENLDWVPLTTLSHCKSLRTMTAISRYMELTIEPVQQAGCSATRLPGDGQTSAGDASL 360
ENQENLDWVPLTTLSHCKSLRTMTAISRYMELTIEPVQQAGCSATRLPGDGQTSAGDASL
Sbjct: 301 ENQENLDWVPLTTLSHCKSLRTMTAISRYMELTIEPVQQAGCSATRLPGDGQTSAGDASL 360
Query: 361 QDPPSYPPVQVIRARVSSGSSSEVSSINSDLEQKYWEALNSEQWDPEDVNLEGSKENVEL 420
QDPPSYPPVQVIRARVSSGSSSEVSSINSDLE WDPEDVNLEGSKENVEL
Sbjct: 361 QDPPSYPPVQVIRARVSSGSSSEVSSINSDLE-----------WDPEDVNLEGSKENVEL 409
Query: 421 LGSQVHQDSVRTAHLSDDD 439
LGSQVHQDSVRTAHLSDDD
Sbjct: 410 LGSQVHQDSVRTAHLSDDD 428
>gi|92110021 PQ loop repeat containing 2 isoform 1 [Homo sapiens]
Length = 291
Score = 53.1 bits (126), Expect = 5e-07
Identities = 67/263 (25%), Positives = 105/263 (39%), Gaps = 26/263 (9%)
Query: 12 WDWDYLDRCFARHRVCISFGLWICASSCWIAAHALLLYLRCAQKPRQDQSALCAACCLLT 71
W WD L C S GL + + C+ AA +++ + DQ+ + LL
Sbjct: 21 WIWDVLGECAQDGWDEASVGLGLISILCF-AASTFPQFIKAYKTGNMDQAL--SLWFLLG 77
Query: 72 SL----CDTVGALLARQLTIQVFTGAYLAAIDLVNFMFILFPVCGSKFKSN-SDREARER 126
+ C+ +G+ LA QL +Q +T Y DLV + KF++ S A
Sbjct: 78 WIGGDSCNLIGSFLADQLPLQTYTAVYYVLADLVMLTLYFY----YKFRTRPSLLSAPIN 133
Query: 127 KRRRQLRASVFALALPLSLGPCWALWVAVPKASATIRGPQRRLLASLLQENTEILGYLLG 186
L A L + GP VA P+ + R S E++G+++G
Sbjct: 134 SVLLFLMGMACATPLLSAAGP-----VAAPREAFRGRALLSVESGSKPFTRQEVIGFVIG 188
Query: 187 SVAAFGSWASRIPPLSRICRGKTFPSIHLWTRLLSALAGLLYASAIVAHDQHPE------ 240
S+++ SR+P + K+ I L L LY +++ ++PE
Sbjct: 189 SISSVLYLLSRLPQIRTNFLRKSTQGISYSLFALVMLGNTLYGLSVLL--KNPEEGQSEG 246
Query: 241 -YLLRATPWFLTSLGRAALDLAI 262
YLL PW + SLG LD I
Sbjct: 247 SYLLHHLPWLVGSLGVLLLDTII 269
>gi|92110025 PQ loop repeat containing 2 isoform 1 [Homo sapiens]
Length = 291
Score = 53.1 bits (126), Expect = 5e-07
Identities = 67/263 (25%), Positives = 105/263 (39%), Gaps = 26/263 (9%)
Query: 12 WDWDYLDRCFARHRVCISFGLWICASSCWIAAHALLLYLRCAQKPRQDQSALCAACCLLT 71
W WD L C S GL + + C+ AA +++ + DQ+ + LL
Sbjct: 21 WIWDVLGECAQDGWDEASVGLGLISILCF-AASTFPQFIKAYKTGNMDQAL--SLWFLLG 77
Query: 72 SL----CDTVGALLARQLTIQVFTGAYLAAIDLVNFMFILFPVCGSKFKSN-SDREARER 126
+ C+ +G+ LA QL +Q +T Y DLV + KF++ S A
Sbjct: 78 WIGGDSCNLIGSFLADQLPLQTYTAVYYVLADLVMLTLYFY----YKFRTRPSLLSAPIN 133
Query: 127 KRRRQLRASVFALALPLSLGPCWALWVAVPKASATIRGPQRRLLASLLQENTEILGYLLG 186
L A L + GP VA P+ + R S E++G+++G
Sbjct: 134 SVLLFLMGMACATPLLSAAGP-----VAAPREAFRGRALLSVESGSKPFTRQEVIGFVIG 188
Query: 187 SVAAFGSWASRIPPLSRICRGKTFPSIHLWTRLLSALAGLLYASAIVAHDQHPE------ 240
S+++ SR+P + K+ I L L LY +++ ++PE
Sbjct: 189 SISSVLYLLSRLPQIRTNFLRKSTQGISYSLFALVMLGNTLYGLSVLL--KNPEEGQSEG 246
Query: 241 -YLLRATPWFLTSLGRAALDLAI 262
YLL PW + SLG LD I
Sbjct: 247 SYLLHHLPWLVGSLGVLLLDTII 269
>gi|92110023 PQ loop repeat containing 2 isoform 2 [Homo sapiens]
Length = 226
Score = 47.8 bits (112), Expect = 2e-05
Identities = 52/197 (26%), Positives = 80/197 (40%), Gaps = 19/197 (9%)
Query: 74 CDTVGALLARQLTIQVFTGAYLAAIDLVNFMFILFPVCGSKFKSN-SDREARERKRRRQL 132
C+ +G+ LA QL +Q +T Y DLV + KF++ S A L
Sbjct: 19 CNLIGSFLADQLPLQTYTAVYYVLADLVMLTLYFY----YKFRTRPSLLSAPINSVLLFL 74
Query: 133 RASVFALALPLSLGPCWALWVAVPKASATIRGPQRRLLASLLQENTEILGYLLGSVAAFG 192
A L + GP VA P+ + R S E++G+++GS+++
Sbjct: 75 MGMACATPLLSAAGP-----VAAPREAFRGRALLSVESGSKPFTRQEVIGFVIGSISSVL 129
Query: 193 SWASRIPPLSRICRGKTFPSIHLWTRLLSALAGLLYASAIVAHDQHPE-------YLLRA 245
SR+P + K+ I L L LY +++ ++PE YLL
Sbjct: 130 YLLSRLPQIRTNFLRKSTQGISYSLFALVMLGNTLYGLSVLL--KNPEEGQSEGSYLLHH 187
Query: 246 TPWFLTSLGRAALDLAI 262
PW + SLG LD I
Sbjct: 188 LPWLVGSLGVLLLDTII 204
>gi|46195763 metastasis suppressor 1-like [Homo sapiens]
Length = 747
Score = 32.7 bits (73), Expect = 0.67
Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 7/99 (7%)
Query: 328 RYMELTIEPVQQAGCSATRLPGDGQTSAGDASLQDPPSYPPVQVIRARVSSGSSSEVSSI 387
RY L A S+ G S DA+ PPS P + + SS +SSE S
Sbjct: 306 RYRSLAQPATTTARLSSVSSHDSGFVSQ-DATYSKPPSPMPSDITSQKSSSSASSEASET 364
Query: 388 NSDLEQ-----KYWEALNSEQWDPEDVNLEGSKENVELL 421
+ + W + S + P L+ K+ VELL
Sbjct: 365 CQSVSECSSPTSDWSKVGSHE-QPSGATLQRRKDRVELL 402
>gi|23308699 transcription factor MAFB [Homo sapiens]
Length = 323
Score = 32.3 bits (72), Expect = 0.88
Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 365 SYPPVQVIRARVSSGSSSEVSSINSDLEQKYWEALNSEQWDPEDVNLEGSKENVELLGSQ 424
S P+ + V S S + + LE YW A N +Q +PE +NL L+GS
Sbjct: 56 SSTPLSTPCSSVPSSPSFSPTEQKTHLEDLYWMASNYQQMNPEALNLTPEDAVEALIGSH 115
Query: 425 -VHQ-----DSVRTAH 434
V Q DS R AH
Sbjct: 116 PVPQPLQSFDSFRGAH 131
>gi|206597543 hypothetical protein LOC118461 isoform 1 [Homo
sapiens]
Length = 1435
Score = 31.6 bits (70), Expect = 1.5
Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 11/124 (8%)
Query: 305 NLDWVPLTTLSHCKSLRTMTAISRYMELTIEPVQQAGCSATRL-----PGDGQTSAGDAS 359
N D P K+ + +SR + EP ++AG T L PG D
Sbjct: 651 NRDPEPGGATEKMKTHQLENGLSRSVSQETEPEREAGLQNTHLNQKFFPGPLSPEEEDVF 710
Query: 360 LQDPPS-YPPVQVIRARVSSGSSSEVSSINSDLEQKYWEALNSEQWDPEDVNLEGS---- 414
D S + P +A+ S+ SSS+ S + D +QK W N + +DV+ S
Sbjct: 711 YSDSQSDFMPSLKGKAKFST-SSSDQSFASFDDQQKMWFTENQREDRRKDVSAGDSQKDE 769
Query: 415 KENV 418
KENV
Sbjct: 770 KENV 773
>gi|155029548 phosphofurin acidic cluster sorting protein 2 isoform
1 [Homo sapiens]
Length = 893
Score = 31.2 bits (69), Expect = 1.9
Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 8/128 (6%)
Query: 271 SKMRQALGFAKEARESPDTQALLTCAEKEEENQENLDWVPLTTLSHCKSLRTMTAISRYM 330
S++ Q + A A + P +A+LT +K + + + ++P + + +A S
Sbjct: 639 SRITQYIAGANCAHQLPIAEAMLTYKQKSPDEESSQKFIPFVGVVKVGIVEPSSATSGDS 698
Query: 331 ELTIEPVQQAGCSATRLPGDGQTSAGDASLQDPPSYPPVQVIRARVSSGSSSEVSSINSD 390
+ + + + P +A +AS PPS P V + S G +E+ + D
Sbjct: 699 D---DAAPSGSGTLSSTPPSASPAAKEAS-PTPPSSPSVSGGLSSPSQGVGAELMGLQVD 754
Query: 391 LEQKYWEA 398
YW A
Sbjct: 755 ----YWTA 758
>gi|155029546 phosphofurin acidic cluster sorting protein 2 isoform
2 [Homo sapiens]
Length = 889
Score = 31.2 bits (69), Expect = 1.9
Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 8/128 (6%)
Query: 271 SKMRQALGFAKEARESPDTQALLTCAEKEEENQENLDWVPLTTLSHCKSLRTMTAISRYM 330
S++ Q + A A + P +A+LT +K + + + ++P + + +A S
Sbjct: 635 SRITQYIAGANCAHQLPIAEAMLTYKQKSPDEESSQKFIPFVGVVKVGIVEPSSATSGDS 694
Query: 331 ELTIEPVQQAGCSATRLPGDGQTSAGDASLQDPPSYPPVQVIRARVSSGSSSEVSSINSD 390
+ + + + P +A +AS PPS P V + S G +E+ + D
Sbjct: 695 D---DAAPSGSGTLSSTPPSASPAAKEAS-PTPPSSPSVSGGLSSPSQGVGAELMGLQVD 750
Query: 391 LEQKYWEA 398
YW A
Sbjct: 751 ----YWTA 754
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 30.0 bits (66), Expect = 4.3
Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 340 AGCSATRLPGDG--QTSAGDASLQDPPSYPPVQVIRARVSSGSSS 382
A RLPG G +SA AS Q PP P VIR + GS S
Sbjct: 1214 ASSEGHRLPGHGPLSSSAPGASTQPPPHLPTKLVIRHGGAGGSPS 1258
>gi|7662058 tectonin beta-propeller repeat containing 2 [Homo sapiens]
Length = 1411
Score = 29.6 bits (65), Expect = 5.7
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 32 LWICASS---CWIAAHALLLYLRCAQKPRQDQSALCAACCLLTSLCDTVGALLARQLTIQ 88
LW+C SS C ++A + Q P + + AAC D++G + R L+
Sbjct: 1139 LWLCQSSKDLCSVSAQSAQSRPSTVQLPPEAEMRAYAACQDALWALDSLGQVFIRTLSKS 1198
Query: 89 VFTGAYLAAIDL 100
TG + +DL
Sbjct: 1199 CPTGMHWTRLDL 1210
>gi|170784831 chromosome 1 open reading frame 9 protein isoform 2
[Homo sapiens]
Length = 1210
Score = 29.6 bits (65), Expect = 5.7
Identities = 36/153 (23%), Positives = 52/153 (33%), Gaps = 28/153 (18%)
Query: 281 KEARESPDTQALLTCAEKEEENQENLDWVPLTTLSHCKSLRTMTAISRYMELTIEPVQQA 340
+E SP T LL E+E+E+ W T C L T+ IS + E +
Sbjct: 540 EEEEASPSTVTLLGSGEQEDESS---PWFESETQIFCSELTTICCISSFSEYIYKWCSVR 596
Query: 341 GCSATRLPGDGQTSAGD-ASLQDPPSYPPVQVIRARVSSGSSSEVSSINSDLEQKYWEAL 399
+ + D L PP P + + V S E+
Sbjct: 597 VALYRQRSRTALSKGKDYLVLAQPPLLLPAESVDVSVLQPLSGEL--------------- 641
Query: 400 NSEQWDPEDVNLEGSKENVEL--LGSQVHQDSV 430
E+ N+E E V L L S +HQD +
Sbjct: 642 -------ENTNIEREAETVVLGDLSSSMHQDDL 667
>gi|7656940 chromosome 1 open reading frame 9 protein isoform 1
[Homo sapiens]
Length = 1254
Score = 29.6 bits (65), Expect = 5.7
Identities = 36/153 (23%), Positives = 52/153 (33%), Gaps = 28/153 (18%)
Query: 281 KEARESPDTQALLTCAEKEEENQENLDWVPLTTLSHCKSLRTMTAISRYMELTIEPVQQA 340
+E SP T LL E+E+E+ W T C L T+ IS + E +
Sbjct: 584 EEEEASPSTVTLLGSGEQEDESS---PWFESETQIFCSELTTICCISSFSEYIYKWCSVR 640
Query: 341 GCSATRLPGDGQTSAGD-ASLQDPPSYPPVQVIRARVSSGSSSEVSSINSDLEQKYWEAL 399
+ + D L PP P + + V S E+
Sbjct: 641 VALYRQRSRTALSKGKDYLVLAQPPLLLPAESVDVSVLQPLSGEL--------------- 685
Query: 400 NSEQWDPEDVNLEGSKENVEL--LGSQVHQDSV 430
E+ N+E E V L L S +HQD +
Sbjct: 686 -------ENTNIEREAETVVLGDLSSSMHQDDL 711
>gi|22749415 integral membrane protein 1 [Homo sapiens]
Length = 705
Score = 29.3 bits (64), Expect = 7.4
Identities = 18/56 (32%), Positives = 28/56 (50%)
Query: 44 HALLLYLRCAQKPRQDQSALCAACCLLTSLCDTVGALLARQLTIQVFTGAYLAAID 99
HA + YLR P+Q + + L+ + TVGALL I +TG + + +D
Sbjct: 280 HAFVDYLRSKLNPQQFEVLFRSVISLVGFVLLTVGALLMLTGKISPWTGRFYSLLD 335
>gi|38683799 ankyrin repeat domain 13 [Homo sapiens]
Length = 590
Score = 29.3 bits (64), Expect = 7.4
Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 18/102 (17%)
Query: 352 QTSAGDASLQD------PPSYPP------VQVIRARVSSGSSSEVSSINSDLEQKYWEAL 399
+TSA A L+D PP +P V+ AR++ G+ + S+ + Q +
Sbjct: 387 RTSAHFARLRDFIKLEFPPGFPVKIEIPLFHVLNARITFGNVNGCSTAEESVSQN----V 442
Query: 400 NSEQWDPED--VNLEGSKENVELLGSQVHQDSVRTAHLSDDD 439
Q D N E + E+ S QD+ R HL D+D
Sbjct: 443 EGTQADSASHITNFEVDQSVFEIPESYYVQDNGRNVHLQDED 484
>gi|38176300 nestin [Homo sapiens]
Length = 1621
Score = 28.9 bits (63), Expect = 9.7
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 25/105 (23%)
Query: 351 GQTSAGDASLQDPPSYPPVQVIRARVSSGSSSEVSSI---------------NSDLEQKY 395
GQ+ ASL PP P + A+ S V SI + +E K
Sbjct: 457 GQSPEDHASLA-PPLSPDHSSLEAKDGESGGSRVFSICRGEGEGQIWGLVEKETAIEGKV 515
Query: 396 WEALNSEQWDPEDVNLEG--------SKENVELLGSQVHQDSVRT 432
+L E W+ ED+N + KE ++ LG ++ Q+S++T
Sbjct: 516 VSSLQQEIWEEEDLNRKEIQDSQVPLEKETLKSLGEEI-QESLKT 559
>gi|169214254 PREDICTED: transmembrane protein 221 [Homo sapiens]
Length = 291
Score = 28.9 bits (63), Expect = 9.7
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 4 APSPAPALWDWDYLDRCFARHRVCISFGLWICASSCWIAA---HALLLY 49
A P P DW D RH ++ GL+ C S ++AA +ALLL+
Sbjct: 100 ARGPGPRRSDWFLYDCRLLRH---VALGLFCCGISVYLAALSIYALLLF 145
>gi|169213600 PREDICTED: transmembrane protein 221 [Homo sapiens]
Length = 291
Score = 28.9 bits (63), Expect = 9.7
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 4 APSPAPALWDWDYLDRCFARHRVCISFGLWICASSCWIAA---HALLLY 49
A P P DW D RH ++ GL+ C S ++AA +ALLL+
Sbjct: 100 ARGPGPRRSDWFLYDCRLLRH---VALGLFCCGISVYLAALSIYALLLF 145
>gi|226442779 jumonji domain containing 1A [Homo sapiens]
Length = 1321
Score = 28.9 bits (63), Expect = 9.7
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 360 LQDPPSYPPVQVIRARVSSGSSSEVSSINSDLEQKYWEALNSEQWDPEDVNLEGSKENVE 419
LQDP + V R G VS ++ LNSE W PE E ++ V+
Sbjct: 954 LQDPNNKSNWNVFRECWKQGQPVMVSGVH--------HKLNSELWKPESFRKEFGEQEVD 1005
Query: 420 LLGSQVHQ 427
L+ + ++
Sbjct: 1006 LVNCRTNE 1013
>gi|20357522 jumonji domain containing 1A [Homo sapiens]
Length = 1321
Score = 28.9 bits (63), Expect = 9.7
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 360 LQDPPSYPPVQVIRARVSSGSSSEVSSINSDLEQKYWEALNSEQWDPEDVNLEGSKENVE 419
LQDP + V R G VS ++ LNSE W PE E ++ V+
Sbjct: 954 LQDPNNKSNWNVFRECWKQGQPVMVSGVH--------HKLNSELWKPESFRKEFGEQEVD 1005
Query: 420 LLGSQVHQ 427
L+ + ++
Sbjct: 1006 LVNCRTNE 1013
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 28.9 bits (63), Expect = 9.7
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 334 IEPVQQAGC------SATRLPGDGQTSAGDASLQDPPSYPPVQVIRARVSSGSSSEVSSI 387
+EP+ A S++ +S +S PS PP+ I + VSSG + E S
Sbjct: 836 VEPLMSAASPGPPTLSSSSSSSSSSSSFSSSSSSSSPSPPPLSAISSVVSSGDNLEASLP 895
Query: 388 NSDLEQKYWEALNSEQWDPEDVNLEGSKENV 418
+Q E L +E P + ++++V
Sbjct: 896 MISFKQ---EELENEGLKPREEPQSAAEQDV 923
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 28.9 bits (63), Expect = 9.7
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 334 IEPVQQAGC------SATRLPGDGQTSAGDASLQDPPSYPPVQVIRARVSSGSSSEVSSI 387
+EP+ A S++ +S +S PS PP+ I + VSSG + E S
Sbjct: 1037 VEPLMSAASPGPPTLSSSSSSSSSSSSFSSSSSSSSPSPPPLSAISSVVSSGDNLEASLP 1096
Query: 388 NSDLEQKYWEALNSEQWDPEDVNLEGSKENV 418
+Q E L +E P + ++++V
Sbjct: 1097 MISFKQ---EELENEGLKPREEPQSAAEQDV 1124
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 28.9 bits (63), Expect = 9.7
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 9/91 (9%)
Query: 334 IEPVQQAGC------SATRLPGDGQTSAGDASLQDPPSYPPVQVIRARVSSGSSSEVSSI 387
+EP+ A S++ +S +S PS PP+ I + VSSG + E S
Sbjct: 1037 VEPLMSAASPGPPTLSSSSSSSSSSSSFSSSSSSSSPSPPPLSAISSVVSSGDNLEASLP 1096
Query: 388 NSDLEQKYWEALNSEQWDPEDVNLEGSKENV 418
+Q E L +E P + ++++V
Sbjct: 1097 MISFKQ---EELENEGLKPREEPQSAAEQDV 1124
>gi|49640014 ubiquitin associated and SH3 domain containing, A short
form [Homo sapiens]
Length = 623
Score = 28.9 bits (63), Expect = 9.7
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 12/98 (12%)
Query: 230 SAIVAHDQHPEYLLRATPWFLTSLGRAALDLAIIFL---SCVMKSKMRQALG-------- 278
SA++ + + EY+ R T + + D +I + + S R LG
Sbjct: 512 SALMPAESYQEYMDRCTASMVQIVNTCPQDTGVILIVSHGSTLDSCTRPLLGLPPRECGD 571
Query: 279 FAKEARESPDTQALLTCAEKEEENQENLDWVPLTTLSH 316
FA+ R+ P + C E +EE + L P+ TL+H
Sbjct: 572 FAQLVRKIPSL-GMCFCEENKEEGKWELVNPPVKTLTH 608
>gi|9507221 ubiquitin associated and SH3 domain containing, A long
form [Homo sapiens]
Length = 661
Score = 28.9 bits (63), Expect = 9.7
Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 12/98 (12%)
Query: 230 SAIVAHDQHPEYLLRATPWFLTSLGRAALDLAIIFL---SCVMKSKMRQALG-------- 278
SA++ + + EY+ R T + + D +I + + S R LG
Sbjct: 550 SALMPAESYQEYMDRCTASMVQIVNTCPQDTGVILIVSHGSTLDSCTRPLLGLPPRECGD 609
Query: 279 FAKEARESPDTQALLTCAEKEEENQENLDWVPLTTLSH 316
FA+ R+ P + C E +EE + L P+ TL+H
Sbjct: 610 FAQLVRKIPSL-GMCFCEENKEEGKWELVNPPVKTLTH 646
>gi|27754773 protocadherin 1 isoform 2 precursor [Homo sapiens]
Length = 1237
Score = 28.9 bits (63), Expect = 9.7
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Query: 353 TSAGDASLQD------PPSYPPVQVIRARVSSGSSSEVSSINSDLEQKYWEALNSEQWDP 406
TS G D PP YP Q+ RV+ ++S+ + + Y+++ E P
Sbjct: 1010 TSTGSEQYSDYSYRTNPPKYPSKQLPHRRVTFSATSQAQELQDPSQHSYYDSGLEESETP 1069
Query: 407 EDVNLEGSK 415
+ G +
Sbjct: 1070 SSKSSSGPR 1078
>gi|52353340 olfactory receptor, family 56, subfamily B, member 1
[Homo sapiens]
Length = 324
Score = 28.9 bits (63), Expect = 9.7
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 210 FPSIHLWTRLLSALAGLLYASAIVAH 235
FP IH W LS LLY SA+ A+
Sbjct: 26 FPGIHSWQHWLSLPLALLYLSALAAN 51
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.132 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,012,317
Number of Sequences: 37866
Number of extensions: 719590
Number of successful extensions: 2424
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2413
Number of HSP's gapped (non-prelim): 31
length of query: 439
length of database: 18,247,518
effective HSP length: 105
effective length of query: 334
effective length of database: 14,271,588
effective search space: 4766710392
effective search space used: 4766710392
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.