Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: STT3A Sequence: fasta or formatted (705aa) NCBI GI: 22749415
Description:

integral membrane protein 1

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         45           3
 C cysteine            1.6         11           1
 D aspartate           4.4         31           2
 E glutamate           3.8         27           2
 F phenylalanine       6.5         46           2
 G glycine             6.4         45           2
 H histidine           2.3         16           1
 I isoleucine          7.1         50           2
 K lysine              4.0         28           2
 L leucine            10.2         72           2
 M methionine          3.8         27           1
 N asparagine          3.3         23           2
 P proline             3.1         22           2
 Q glutamine           2.0         14           2
 R arginine            4.8         34           1
 S serine              7.9         56           2
 T threonine           6.2         44           2
 V valine              7.7         54           2
 W tryptophan          2.0         14           2
 Y tyrosine            6.5         46           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   integral membrane protein 1 
STT3B                 0.599   source of immunodominant MHC-associated peptides [Ho...
LOC100132330          0.006   PREDICTED: similar to mal, T-cell differentiation p...
LOC100132330          0.006   PREDICTED: similar to mal, T-cell differentiation p...
LOC100132330          0.006   PREDICTED: similar to mal, T-cell differentiation p...
SLC7A2                0.005   solute carrier family 7, member 2 isoform 2 
OR8B4                 0.005   olfactory receptor, family 8, subfamily B, member 4 ...
WDR60                 0.004   WD repeat domain 60 
CHIT1                 0.004   chitotriosidase 
CCDC47                0.004   coiled-coil domain containing 47 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press