Guide to the Human Genome
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Name: PQLC2 Sequence: fasta or formatted (226aa) NCBI GI: 92110023
Description:

PQ loop repeat containing 2 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {291aa} PQ loop repeat containing 2 isoform 1
alt prot {291aa} PQ loop repeat containing 2 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.1         16           2
 C cysteine            0.9          2           1
 D aspartate           2.2          5           1
 E glutamate           3.5          8           2
 F phenylalanine       4.9         11           1
 G glycine             7.5         17           2
 H histidine           0.9          2           2
 I isoleucine          4.9         11           2
 K lysine              1.8          4           1
 L leucine            19.9         45           3
 M methionine          2.2          5           1
 N asparagine          2.2          5           1
 P proline             5.3         12           1
 Q glutamine           3.5          8           1
 R arginine            4.9         11           2
 S serine             11.1         25           2
 T threonine           4.9         11           1
 V valine              6.2         14           1
 W tryptophan          1.3          3           1
 Y tyrosine            4.9         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PQ loop repeat containing 2 isoform 2 
PQLC2                 1.000   PQ loop repeat containing 2 isoform 1 
PQLC2                 1.000   PQ loop repeat containing 2 isoform 1 
C3orf55               0.084   hypothetical protein LOC152078 isoform 1 
C3orf55               0.084   hypothetical protein LOC152078 isoform 3 
TMEM44                0.055   transmembrane protein 44 isoform b 
TMEM44                0.055   transmembrane protein 44 isoform a 
C3orf55               0.036   hypothetical protein LOC152078 isoform 2 
CTNS                  0.022   cystinosis, nephropathic isoform 2 
CTNS                  0.022   cystinosis, nephropathic isoform 1 
IGSF1                 0.010   immunoglobulin superfamily, member 1 isoform 1 [Homo...
AP1B1                 0.010   adaptor-related protein complex 1 beta 1 subunit iso...
AP1B1                 0.010   adaptor-related protein complex 1 beta 1 subunit iso...
CES1                  0.007   carboxylesterase 1 isoform a precursor 
CES1                  0.007   carboxylesterase 1 isoform b precursor 
CES1                  0.007   carboxylesterase 1 isoform c precursor 
PUM1                  0.007   pumilio 1 isoform 2 
PUM1                  0.007   pumilio 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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