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Search of human proteins with 38490537
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38490537 RAB7B, member RAS oncogene family [Homo sapiens]
(199 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38490537 RAB7B, member RAS oncogene family [Homo sapiens] 399 e-112
gi|34147513 RAB7, member RAS oncogene family [Homo sapiens] 182 2e-46
gi|4759012 RAB9A, member RAS oncogene family [Homo sapiens] 144 4e-35
gi|7705963 RAB9B, member RAS oncogene family [Homo sapiens] 141 3e-34
gi|5803133 RAB32, member RAS oncogene family [Homo sapiens] 122 3e-28
gi|34485714 Ras-related protein Rab-23 [Homo sapiens] 122 3e-28
gi|34485716 Ras-related protein Rab-23 [Homo sapiens] 122 3e-28
gi|19923260 RAB4A, member RAS oncogene family [Homo sapiens] 121 3e-28
gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo sap... 119 1e-27
gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens] 119 2e-27
gi|96975097 RAB6B, member RAS oncogene family [Homo sapiens] 119 2e-27
gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene fa... 118 4e-27
gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens] 118 4e-27
gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens] 118 4e-27
gi|19923231 RAB6A, member RAS oncogene family isoform a [Homo sa... 116 1e-26
gi|38679888 RAB6A, member RAS oncogene family isoform b [Homo sa... 115 2e-26
gi|4506363 RAB13, member RAS oncogene family [Homo sapiens] 115 2e-26
gi|4506371 RAB5B, member RAS oncogene family [Homo sapiens] 114 4e-26
gi|5803135 RAB35, member RAS oncogene family [Homo sapiens] 114 4e-26
gi|82659107 ras-related GTP-binding protein 4b [Homo sapiens] 114 5e-26
gi|19923750 RAB3B, member RAS oncogene family [Homo sapiens] 112 3e-25
gi|19923262 RAB5A, member RAS oncogene family [Homo sapiens] 112 3e-25
gi|106507164 RAB12, member RAS oncogene family [Homo sapiens] 112 3e-25
gi|21361418 RAB30, member RAS oncogene family [Homo sapiens] 112 3e-25
gi|19923985 RAB3C, member RAS oncogene family [Homo sapiens] 111 4e-25
gi|21361884 RAB2B protein isoform 1 [Homo sapiens] 110 6e-25
gi|11641237 RAB38 [Homo sapiens] 110 6e-25
gi|19923483 GTPase Rab14 [Homo sapiens] 110 8e-25
gi|4759000 RAB3D, member RAS oncogene family [Homo sapiens] 110 8e-25
gi|41393614 RAB5C, member RAS oncogene family isoform a [Homo sa... 110 1e-24
>gi|38490537 RAB7B, member RAS oncogene family [Homo sapiens]
Length = 199
Score = 399 bits (1026), Expect = e-112
Identities = 199/199 (100%), Positives = 199/199 (100%)
Query: 1 MNPRKKVDLKLIIVGAIGVGKTSLPHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQ 60
MNPRKKVDLKLIIVGAIGVGKTSLPHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQ
Sbjct: 1 MNPRKKVDLKLIIVGAIGVGKTSLPHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQ 60
Query: 61 IWDTGGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPMEQSYPMV 120
IWDTGGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPMEQSYPMV
Sbjct: 61 IWDTGGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPMEQSYPMV 120
Query: 121 LLGNKIDLADRKVPQEVAQGWCREKDIPYFEVSAKNDINVVQAFEMLASRALSRYQSILE 180
LLGNKIDLADRKVPQEVAQGWCREKDIPYFEVSAKNDINVVQAFEMLASRALSRYQSILE
Sbjct: 121 LLGNKIDLADRKVPQEVAQGWCREKDIPYFEVSAKNDINVVQAFEMLASRALSRYQSILE 180
Query: 181 NHLTESIKLSPDQSRSRCC 199
NHLTESIKLSPDQSRSRCC
Sbjct: 181 NHLTESIKLSPDQSRSRCC 199
>gi|34147513 RAB7, member RAS oncogene family [Homo sapiens]
Length = 207
Score = 182 bits (462), Expect = 2e-46
Identities = 96/192 (50%), Positives = 131/192 (68%), Gaps = 3/192 (1%)
Query: 1 MNPRKKVDLKLIIVGAIGVGKTSLPHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQ 60
M RKKV LK+II+G GVGKTSL +QYV+K F +Y+ T+GA L+K +++ D + +Q
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61 IWDTGGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPME-QSYPM 119
IWDT GQERF+S+ FY+G+D C+L FDVT +F+ LD WR + L + P + +++P
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 120 VLLGNKIDLADRKVPQEVAQGWCREK-DIPYFEVSAKNDINVVQAFEMLASRALSRYQSI 178
V+LGNKIDL +R+V + AQ WC K +IPYFE SAK INV QAF+ +A AL + +
Sbjct: 121 VVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEV 180
Query: 179 -LENHLTESIKL 189
L N E IKL
Sbjct: 181 ELYNEFPEPIKL 192
>gi|4759012 RAB9A, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 144 bits (364), Expect = 4e-35
Identities = 83/195 (42%), Positives = 119/195 (61%), Gaps = 8/195 (4%)
Query: 10 KLIIVGAIGVGKTSLPHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQIWDTGGQER 69
K+I++G GVGK+SL ++YV F + T+G L+K + + + +QIWDT GQER
Sbjct: 9 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 68
Query: 70 FRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGD-VLAKIVPMEQSYPMVLLGNKIDL 128
FRS+ + FY+GSD C+L F V D +SF+ L W+ + + V +S+P V+LGNKID+
Sbjct: 69 FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI 128
Query: 129 ADRKVPQEVAQGWCREK-DIPYFEVSAKNDINVVQAFEMLASRALSRYQSILENHL--TE 185
++R+V E AQ WCR+ D PYFE SAK+ NV AFE R L+ +HL T+
Sbjct: 129 SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATEDR--SDHLIQTD 186
Query: 186 SIKL--SPDQSRSRC 198
++ L P S S C
Sbjct: 187 TVNLHRKPKPSSSCC 201
>gi|7705963 RAB9B, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 141 bits (356), Expect = 3e-34
Identities = 81/198 (40%), Positives = 118/198 (59%), Gaps = 3/198 (1%)
Query: 5 KKVDLKLIIVGAIGVGKTSLPHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQIWDT 64
K + LK+I++G GVGK+SL ++YV F + T+G L++ + + + LQIWDT
Sbjct: 4 KSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDT 63
Query: 65 GGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGD-VLAKIVPMEQSYPMVLLG 123
GQERF+S+ + FY+G+D C+L F V D +SFE L W+ + + V + +P V+LG
Sbjct: 64 AGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLG 123
Query: 124 NKIDLADRKVPQEVAQGWCREK-DIPYFEVSAKNDINVVQAFEMLASRALSRYQSILENH 182
NK+D DR+V E AQ WC E D PY E SAK+D NV AFE + L+ + +
Sbjct: 124 NKVDKEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVEEQLEHCM 183
Query: 183 LTESIKL-SPDQSRSRCC 199
L +I L S ++ S CC
Sbjct: 184 LGHTIDLNSGSKAGSSCC 201
>gi|5803133 RAB32, member RAS oncogene family [Homo sapiens]
Length = 225
Score = 122 bits (305), Expect = 3e-28
Identities = 71/200 (35%), Positives = 117/200 (58%), Gaps = 11/200 (5%)
Query: 10 KLIIVGAIGVGKTSLPHQYVHKTFYEEYQTTLGASILSKIIILGDTTL-KLQIWDTGGQE 68
K++++G +GVGKTS+ +YVH+ F + Y+ T+G K++ TL +LQ+WD GQE
Sbjct: 27 KVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRTLVRLQLWDIAGQE 86
Query: 69 RFRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKI-VPMEQSYPMVLLGNKID 127
RF +M +YK + G + FD++ +FEA+ W+ D+ +K+ +P P VLL NK D
Sbjct: 87 RFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLANKCD 146
Query: 128 --LADRKVPQEVAQGWCREKDIP-YFEVSAKNDINVVQAFEMLASRALSRYQSI-LENHL 183
+ P +V Q +C+E +FE SAK++IN+ +A L + L +QS E +
Sbjct: 147 QNKDSSQSPSQVDQ-FCKEHGFAGWFETSAKDNINIEEAARFLVEKILVNHQSFPNEEND 205
Query: 184 TESIKLSPD----QSRSRCC 199
+ IKL + +++S+CC
Sbjct: 206 VDKIKLDQETLRAENKSQCC 225
>gi|34485714 Ras-related protein Rab-23 [Homo sapiens]
Length = 237
Score = 122 bits (305), Expect = 3e-28
Identities = 66/184 (35%), Positives = 106/184 (57%), Gaps = 7/184 (3%)
Query: 6 KVDLKLIIVGAIGVGKTSLPHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQIWDTG 65
+V +K+++VG VGK+S+ +Y F ++Y+ T+G L + I + D ++L +WDT
Sbjct: 7 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTA 66
Query: 66 GQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPMEQSYPMVLLGNK 125
GQE F ++ +Y+G+ C+L F TD ESFEA+ WR V+A++ P VL+ NK
Sbjct: 67 GQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEV----GDIPTVLVQNK 122
Query: 126 IDLADRK-VPQEVAQGWCREKDIPYFEVSAKNDINVVQAFEMLASRALSRY-QSILEN-H 182
IDL D + E A+ + + ++ S K D+NV + F+ LA + L + Q I E+
Sbjct: 123 IDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAEDPE 182
Query: 183 LTES 186
LT S
Sbjct: 183 LTHS 186
>gi|34485716 Ras-related protein Rab-23 [Homo sapiens]
Length = 237
Score = 122 bits (305), Expect = 3e-28
Identities = 66/184 (35%), Positives = 106/184 (57%), Gaps = 7/184 (3%)
Query: 6 KVDLKLIIVGAIGVGKTSLPHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQIWDTG 65
+V +K+++VG VGK+S+ +Y F ++Y+ T+G L + I + D ++L +WDT
Sbjct: 7 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTA 66
Query: 66 GQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPMEQSYPMVLLGNK 125
GQE F ++ +Y+G+ C+L F TD ESFEA+ WR V+A++ P VL+ NK
Sbjct: 67 GQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEV----GDIPTVLVQNK 122
Query: 126 IDLADRK-VPQEVAQGWCREKDIPYFEVSAKNDINVVQAFEMLASRALSRY-QSILEN-H 182
IDL D + E A+ + + ++ S K D+NV + F+ LA + L + Q I E+
Sbjct: 123 IDLLDDSCIKNEEAEALAKRLKLRFYRTSVKEDLNVNEVFKYLAEKYLQKLKQQIAEDPE 182
Query: 183 LTES 186
LT S
Sbjct: 183 LTHS 186
>gi|19923260 RAB4A, member RAS oncogene family [Homo sapiens]
Length = 218
Score = 121 bits (304), Expect = 3e-28
Identities = 66/169 (39%), Positives = 104/169 (61%), Gaps = 4/169 (2%)
Query: 10 KLIIVGAIGVGKTSLPHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQIWDTGGQER 69
K +++G G GK+ L HQ++ K F ++ T+G SKII +G +KLQIWDT GQER
Sbjct: 15 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 74
Query: 70 FRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPMEQSYPMVLLGNKIDL- 128
FRS+ ++Y+G+ G +L +D+T E++ AL W D A+++ Q+ ++L GNK DL
Sbjct: 75 FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTD--ARML-ASQNIVIILCGNKKDLD 131
Query: 129 ADRKVPQEVAQGWCREKDIPYFEVSAKNDINVVQAFEMLASRALSRYQS 177
ADR+V A + +E ++ + E SA NV +AF A + L++ +S
Sbjct: 132 ADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIES 180
>gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo
sapiens]
Length = 205
Score = 119 bits (299), Expect = 1e-27
Identities = 67/175 (38%), Positives = 100/175 (57%), Gaps = 4/175 (2%)
Query: 1 MNPRKKVDLKLIIVGAIGVGKTSLPHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQ 60
MNP KL+++G GVGK+ L ++ T+ E Y +T+G + I L T+KLQ
Sbjct: 4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 63
Query: 61 IWDTGGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPMEQSYPMV 120
IWDT GQERFR++ S++Y+G+ G I+ +DVTD ESF + W ++ ++ +
Sbjct: 64 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRY---ASENVNKL 120
Query: 121 LLGNKIDLADRK-VPQEVAQGWCREKDIPYFEVSAKNDINVVQAFEMLASRALSR 174
L+GNK DL +K V A+ + IP+ E SAKN NV Q+F +A+ R
Sbjct: 121 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 175
>gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 119 bits (298), Expect = 2e-27
Identities = 67/175 (38%), Positives = 100/175 (57%), Gaps = 4/175 (2%)
Query: 1 MNPRKKVDLKLIIVGAIGVGKTSLPHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQ 60
MNP KL+++G GVGK+ L ++ T+ E Y +T+G + I L T+KLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQ 60
Query: 61 IWDTGGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPMEQSYPMV 120
IWDT GQERFR++ S++Y+G+ G I+ +DVTD ES+ + W ++ ++ +
Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRY---ASENVNKL 117
Query: 121 LLGNKIDLADRK-VPQEVAQGWCREKDIPYFEVSAKNDINVVQAFEMLASRALSR 174
L+GNK DL +K V A+ + IP+ E SAKN NV QAF +A+ R
Sbjct: 118 LVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKR 172
>gi|96975097 RAB6B, member RAS oncogene family [Homo sapiens]
Length = 208
Score = 119 bits (298), Expect = 2e-27
Identities = 70/193 (36%), Positives = 110/193 (56%), Gaps = 7/193 (3%)
Query: 2 NPRKKVDLKLIIVGAIGVGKTSLPHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQI 61
NP +K KL+ +G VGKTSL ++++ +F YQ T+G LSK + L D T++LQ+
Sbjct: 9 NPLRK--FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 66
Query: 62 WDTGGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPMEQSYPMVL 121
WDT GQERFRS++ ++ + S ++ +D+T+L SF+ W DV + ++L
Sbjct: 67 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTE---RGSDVIIML 123
Query: 122 LGNKIDLAD-RKVPQEVAQGWCREKDIPYFEVSAKNDINVVQAFEMLASRALSRYQSILE 180
+GNK DLAD R++ E + +E + + E SAK NV Q F +AS AL +++ E
Sbjct: 124 VGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVAS-ALPGMENVQE 182
Query: 181 NHLTESIKLSPDQ 193
I + D+
Sbjct: 183 KSKEGMIDIKLDK 195
>gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene
family [Homo sapiens]
Length = 327
Score = 118 bits (295), Expect = 4e-27
Identities = 63/160 (39%), Positives = 95/160 (59%), Gaps = 4/160 (2%)
Query: 10 KLIIVGAIGVGKTSLPHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQIWDTGGQER 69
KL+++G GVGKT L ++ F Y +T+G + + + +KLQ+WDT GQER
Sbjct: 134 KLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQER 193
Query: 70 FRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPMEQSYPMVLLGNKIDL- 128
F+++ + +Y+G+ G ILA+D+TD +SFE + W ++ +LLGNK D+
Sbjct: 194 FKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMEN---ASAGVEHLLLGNKCDME 250
Query: 129 ADRKVPQEVAQGWCREKDIPYFEVSAKNDINVVQAFEMLA 168
A RKV +E A RE I +FE SAK+ +NV +AF LA
Sbjct: 251 AKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLA 290
>gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 118 bits (295), Expect = 4e-27
Identities = 63/160 (39%), Positives = 95/160 (59%), Gaps = 4/160 (2%)
Query: 10 KLIIVGAIGVGKTSLPHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQIWDTGGQER 69
KL+++G GVGKT L ++ F Y +T+G + + + +KLQ+WDT GQER
Sbjct: 134 KLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQER 193
Query: 70 FRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPMEQSYPMVLLGNKIDL- 128
F+++ + +Y+G+ G ILA+D+TD +SFE + W ++ +LLGNK D+
Sbjct: 194 FKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMEN---ASAGVEHLLLGNKCDME 250
Query: 129 ADRKVPQEVAQGWCREKDIPYFEVSAKNDINVVQAFEMLA 168
A RKV +E A RE I +FE SAK+ +NV +AF LA
Sbjct: 251 AKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLA 290
>gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 118 bits (295), Expect = 4e-27
Identities = 63/160 (39%), Positives = 95/160 (59%), Gaps = 4/160 (2%)
Query: 10 KLIIVGAIGVGKTSLPHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQIWDTGGQER 69
KL+++G GVGKT L ++ F Y +T+G + + + +KLQ+WDT GQER
Sbjct: 134 KLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQER 193
Query: 70 FRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPMEQSYPMVLLGNKIDL- 128
F+++ + +Y+G+ G ILA+D+TD +SFE + W ++ +LLGNK D+
Sbjct: 194 FKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMEN---ASAGVEHLLLGNKCDME 250
Query: 129 ADRKVPQEVAQGWCREKDIPYFEVSAKNDINVVQAFEMLA 168
A RKV +E A RE I +FE SAK+ +NV +AF LA
Sbjct: 251 AKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLA 290
>gi|19923231 RAB6A, member RAS oncogene family isoform a [Homo
sapiens]
Length = 208
Score = 116 bits (291), Expect = 1e-26
Identities = 64/169 (37%), Positives = 101/169 (59%), Gaps = 6/169 (3%)
Query: 2 NPRKKVDLKLIIVGAIGVGKTSLPHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQI 61
NP +K KL+ +G VGKTSL ++++ +F YQ T+G LSK + L D T++LQ+
Sbjct: 9 NPLRK--FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQL 66
Query: 62 WDTGGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPMEQSYPMVL 121
WDT GQERFRS++ ++ + S ++ +D+T++ SF+ W DV + ++L
Sbjct: 67 WDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE---RGSDVIIML 123
Query: 122 LGNKIDLAD-RKVPQEVAQGWCREKDIPYFEVSAKNDINVVQAFEMLAS 169
+GNK DLAD R+V E + +E ++ + E SAK NV Q F +A+
Sbjct: 124 VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA 172
>gi|38679888 RAB6A, member RAS oncogene family isoform b [Homo
sapiens]
Length = 208
Score = 115 bits (288), Expect = 2e-26
Identities = 64/169 (37%), Positives = 101/169 (59%), Gaps = 6/169 (3%)
Query: 2 NPRKKVDLKLIIVGAIGVGKTSLPHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQI 61
NP +K KL+ +G VGKTSL ++++ +F YQ T+G LSK + L D T++LQ+
Sbjct: 9 NPLRK--FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 66
Query: 62 WDTGGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPMEQSYPMVL 121
WDT GQERFRS++ ++ + S ++ +D+T++ SF+ W DV + ++L
Sbjct: 67 WDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTE---RGSDVIIML 123
Query: 122 LGNKIDLAD-RKVPQEVAQGWCREKDIPYFEVSAKNDINVVQAFEMLAS 169
+GNK DLAD R+V E + +E ++ + E SAK NV Q F +A+
Sbjct: 124 VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAA 172
>gi|4506363 RAB13, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 115 bits (288), Expect = 2e-26
Identities = 62/160 (38%), Positives = 93/160 (58%), Gaps = 4/160 (2%)
Query: 10 KLIIVGAIGVGKTSLPHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQIWDTGGQER 69
KL+++G GVGKT L ++ F Y +T+G + + + +KLQ+WDT GQER
Sbjct: 10 KLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQER 69
Query: 70 FRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPMEQSYPMVLLGNKIDL- 128
F+++ + +Y+G+ G IL +D+TD +SFE + W + +LLGNK D+
Sbjct: 70 FKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKEN---ASAGVERLLLGNKCDME 126
Query: 129 ADRKVPQEVAQGWCREKDIPYFEVSAKNDINVVQAFEMLA 168
A RKV +E A RE I +FE SAK+ +NV +AF LA
Sbjct: 127 AKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLA 166
>gi|4506371 RAB5B, member RAS oncogene family [Homo sapiens]
Length = 215
Score = 114 bits (286), Expect = 4e-26
Identities = 66/200 (33%), Positives = 108/200 (54%), Gaps = 8/200 (4%)
Query: 5 KKVDLKLIIVGAIGVGKTSLPHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQIWDT 64
K KL+++G VGK+SL ++V F+E ++T+GA+ L++ + L DTT+K +IWDT
Sbjct: 17 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDT 76
Query: 65 GGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPMEQSYPMVLLGN 124
GQER+ S+ +Y+G+ I+ +D+T+ E+F W ++ + P S + L GN
Sbjct: 77 AGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASP---SIVIALAGN 133
Query: 125 KIDLAD-RKVPQEVAQGWCREKDIPYFEVSAKNDINVVQAFEMLASRALSRYQSILENHL 183
K DLA+ R V E AQ + + + + E SAK +NV F +A + L
Sbjct: 134 KADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQNLGGAA 193
Query: 184 TES----IKLSPDQSRSRCC 199
S + Q++S+CC
Sbjct: 194 GRSRGVDLHEQSQQNKSQCC 213
>gi|5803135 RAB35, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 114 bits (286), Expect = 4e-26
Identities = 71/196 (36%), Positives = 106/196 (54%), Gaps = 10/196 (5%)
Query: 10 KLIIVGAIGVGKTSLPHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQIWDTGGQER 69
KL+I+G GVGK+SL ++ TF Y TT+G + + + +KLQIWDT GQER
Sbjct: 10 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQER 69
Query: 70 FRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPMEQSYPMVLLGNKIDLA 129
FR++ ST+Y+G+ G I+ +DVT ESF + W L +I +L+GNK D
Sbjct: 70 FRTITSTYYRGTHGVIVVYDVTSAESFVNVKRW----LHEINQNCDDVCRILVGNKNDDP 125
Query: 130 DRKVPQ-EVAQGWCREKDIPYFEVSAKNDINVVQAFEMLASRALSRYQSIL----ENHLT 184
+RKV + E A + + I FE SAK ++NV + F + L + L +
Sbjct: 126 ERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQQQQQQN 185
Query: 185 ESIKLSPDQSR-SRCC 199
+ +KL+ + R RCC
Sbjct: 186 DVVKLTKNSKRKKRCC 201
>gi|82659107 ras-related GTP-binding protein 4b [Homo sapiens]
Length = 213
Score = 114 bits (285), Expect = 5e-26
Identities = 59/169 (34%), Positives = 98/169 (57%), Gaps = 4/169 (2%)
Query: 10 KLIIVGAIGVGKTSLPHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQIWDTGGQER 69
K +++G+ G GK+ L HQ++ F ++ T+G S+++ +G T+KLQIWDT GQER
Sbjct: 10 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQER 69
Query: 70 FRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPMEQSYPMVLLGNKIDL- 128
FRS+ ++Y+G+ G +L +D+T E++ +L W D P + ++L GNK DL
Sbjct: 70 FRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASP---NIVVILCGNKKDLD 126
Query: 129 ADRKVPQEVAQGWCREKDIPYFEVSAKNDINVVQAFEMLASRALSRYQS 177
+R+V A + +E ++ + E SA NV +AF A L++ S
Sbjct: 127 PEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDS 175
>gi|19923750 RAB3B, member RAS oncogene family [Homo sapiens]
Length = 219
Score = 112 bits (279), Expect = 3e-25
Identities = 63/172 (36%), Positives = 97/172 (56%), Gaps = 4/172 (2%)
Query: 10 KLIIVGAIGVGKTSLPHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQIWDTGGQER 69
KL+I+G VGKTS +Y TF + +T+G K + + +KLQIWDT GQER
Sbjct: 24 KLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQER 83
Query: 70 FRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPMEQSYPMVLLGNKIDL- 128
+R++ + +Y+G+ G IL +D+T+ ESF A+ W + K + + ++L+GNK D+
Sbjct: 84 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQI--KTYSWDNA-QVILVGNKCDME 140
Query: 129 ADRKVPQEVAQGWCREKDIPYFEVSAKNDINVVQAFEMLASRALSRYQSILE 180
+R VP E Q + +FE SAK +I+V QAFE L + L+
Sbjct: 141 EERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDSLD 192
>gi|19923262 RAB5A, member RAS oncogene family [Homo sapiens]
Length = 215
Score = 112 bits (279), Expect = 3e-25
Identities = 59/167 (35%), Positives = 99/167 (59%), Gaps = 4/167 (2%)
Query: 5 KKVDLKLIIVGAIGVGKTSLPHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQIWDT 64
K KL+++G VGK+SL ++V F+E ++T+GA+ L++ + L DTT+K +IWDT
Sbjct: 17 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDT 76
Query: 65 GGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPMEQSYPMVLLGN 124
GQER+ S+ +Y+G+ I+ +D+T+ ESF W ++ + P + + L GN
Sbjct: 77 AGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP---NIVIALSGN 133
Query: 125 KIDLAD-RKVPQEVAQGWCREKDIPYFEVSAKNDINVVQAFEMLASR 170
K DLA+ R V + AQ + + + + E SAK +NV + F +A +
Sbjct: 134 KADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK 180
>gi|106507164 RAB12, member RAS oncogene family [Homo sapiens]
Length = 244
Score = 112 bits (279), Expect = 3e-25
Identities = 72/213 (33%), Positives = 115/213 (53%), Gaps = 19/213 (8%)
Query: 3 PRKKVDLKL--IIVGAIGVGKTSLPHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQ 60
P + D KL II+G+ GVGKTSL ++ TF E ++T+G K + L ++LQ
Sbjct: 35 PPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQ 94
Query: 61 IWDTGGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPMEQSYPMV 120
IWDT GQERF S+ S +Y+ + G IL +D+T E+F+ L W ++ K + ++
Sbjct: 95 IWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWM-KMIDKYA--SEDAELL 151
Query: 121 LLGNKIDL-ADRKVPQEVAQGWCRE-KDIPYFEVSAKNDINVVQAFEMLASRALSRYQ-S 177
L+GNK+D DR++ ++ + + ++ + + E SAK++ NV + F L L +
Sbjct: 152 LVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPLD 211
Query: 178 ILENHLTESI-----------KLSPDQSRSRCC 199
IL N L+ SI +L P + RCC
Sbjct: 212 ILRNELSNSILSLQPEPEIPPELPPPRPHVRCC 244
>gi|21361418 RAB30, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 112 bits (279), Expect = 3e-25
Identities = 69/196 (35%), Positives = 107/196 (54%), Gaps = 12/196 (6%)
Query: 10 KLIIVGAIGVGKTSLPHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQIWDTGGQER 69
K++++G GVGKT L ++ F T+G + K + + +KLQIWDT GQER
Sbjct: 11 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 70
Query: 70 FRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPMEQSYPMVLLGNKIDLA 129
FRS+ ++Y+ ++ IL +D+T ESF L W ++ VL+GNKIDLA
Sbjct: 71 FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQY---ASNKVITVLVGNKIDLA 127
Query: 130 DRK-VPQEVAQGWCREKDIPYFEVSAKNDINVVQAFEMLASRALSR-YQSILENHLTESI 187
+R+ V Q+ A+ + +D+ Y E SAK NV + F LA R +S Q+ L N+++ +
Sbjct: 128 ERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNVSSPL 187
Query: 188 KLSPDQSRS----RCC 199
P + +S CC
Sbjct: 188 ---PGEGKSISYLTCC 200
>gi|19923985 RAB3C, member RAS oncogene family [Homo sapiens]
Length = 227
Score = 111 bits (278), Expect = 4e-25
Identities = 64/183 (34%), Positives = 103/183 (56%), Gaps = 12/183 (6%)
Query: 10 KLIIVGAIGVGKTSLPHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQIWDTGGQER 69
KL+I+G VGKTS +Y +F + +T+G K + + +KLQIWDT GQER
Sbjct: 32 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQER 91
Query: 70 FRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPMEQSYPMVLLGNKIDLA 129
+R++ + +Y+G+ G IL +D+T+ ESF A+ W + K + + ++L+GNK D+
Sbjct: 92 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQI--KTYSWDNA-QVILVGNKCDME 148
Query: 130 D-RKVPQEVAQGWCREKDIPYFEVSAKNDINVVQAFEMLASRALSRYQSILENHLTESIK 188
D R + E Q + +FE SAK++INV Q FE L I+ + ++ES++
Sbjct: 149 DERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLV--------DIICDKMSESLE 200
Query: 189 LSP 191
P
Sbjct: 201 TDP 203
>gi|21361884 RAB2B protein isoform 1 [Homo sapiens]
Length = 216
Score = 110 bits (276), Expect = 6e-25
Identities = 67/190 (35%), Positives = 102/190 (53%), Gaps = 6/190 (3%)
Query: 10 KLIIVGAIGVGKTSLPHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQIWDTGGQER 69
K II+G GVGK+ L Q+ K F + T+G ++++ + +KLQIWDT GQE
Sbjct: 8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 67
Query: 70 FRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPMEQSYPMVLLGNKIDLA 129
FRS+ ++Y+G+ G +L +D+T E+F L W D + ++L+GNK DL
Sbjct: 68 FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQH---SSSNMVIMLIGNKSDLE 124
Query: 130 DRK-VPQEVAQGWCREKDIPYFEVSAKNDINVVQAFEMLASRALSRYQSILENHLTES-- 186
R+ V +E + + RE + + E SAK NV +AF A + Q L + E+
Sbjct: 125 SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGLFDVHNEANG 184
Query: 187 IKLSPDQSRS 196
IK+ P QS S
Sbjct: 185 IKIGPQQSIS 194
>gi|11641237 RAB38 [Homo sapiens]
Length = 211
Score = 110 bits (276), Expect = 6e-25
Identities = 63/191 (32%), Positives = 107/191 (56%), Gaps = 5/191 (2%)
Query: 3 PRKKVDLKLIIVGAIGVGKTSLPHQYVHKTFYEEYQTTLGASILSKIIILG-DTTLKLQI 61
P K+ KL+++G +GVGKTS+ +YVH+ F Y+ T+G K++ +T ++LQ+
Sbjct: 4 PHKEHLYKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQL 63
Query: 62 WDTGGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKI-VPMEQSYPMV 120
WD GQERF +M +Y+ + G + FDVT +FEA+ W+ D+ +K+ +P + +V
Sbjct: 64 WDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVV 123
Query: 121 LLGNKIDLADRKVPQE--VAQGWCREKD-IPYFEVSAKNDINVVQAFEMLASRALSRYQS 177
LL NK D + +C+E + +FE SAK +IN+ +A L L+
Sbjct: 124 LLANKCDQGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILANECD 183
Query: 178 ILENHLTESIK 188
++E+ + +K
Sbjct: 184 LMESIEPDVVK 194
>gi|19923483 GTPase Rab14 [Homo sapiens]
Length = 215
Score = 110 bits (275), Expect = 8e-25
Identities = 64/175 (36%), Positives = 97/175 (55%), Gaps = 7/175 (4%)
Query: 10 KLIIVGAIGVGKTSLPHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQIWDTGGQER 69
K II+G +GVGK+ L HQ+ K F + T+G ++II + +KLQIWDT GQER
Sbjct: 13 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 72
Query: 70 FRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPMEQSYPMVLLGNKIDL- 128
FR++ ++Y+G+ G ++ +D+T ++ L W D P + ++L+GNK DL
Sbjct: 73 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP---NTVIILIGNKADLE 129
Query: 129 ADRKVPQEVAQGWCREKDIPYFEVSAKNDINVVQAFEMLASRALSRYQSILENHL 183
A R V E A+ + E + + E SAK NV AF A + YQ+I + L
Sbjct: 130 AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI---YQNIQDGSL 181
>gi|4759000 RAB3D, member RAS oncogene family [Homo sapiens]
Length = 219
Score = 110 bits (275), Expect = 8e-25
Identities = 62/172 (36%), Positives = 95/172 (55%), Gaps = 4/172 (2%)
Query: 10 KLIIVGAIGVGKTSLPHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQIWDTGGQER 69
KL+++G VGKTS +Y +F + +T+G K + D +KLQIWDT GQER
Sbjct: 24 KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER 83
Query: 70 FRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPMEQSYPMVLLGNKIDLA 129
+R++ + +Y+G+ G +L +D+ + ESF A+ W + K + + ++L+GNK DL
Sbjct: 84 YRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQI--KTYSWDNA-QVILVGNKCDLE 140
Query: 130 D-RKVPQEVAQGWCREKDIPYFEVSAKNDINVVQAFEMLASRALSRYQSILE 180
D R VP E + + +FE SAK +INV Q FE L + LE
Sbjct: 141 DERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNESLE 192
>gi|41393614 RAB5C, member RAS oncogene family isoform a [Homo
sapiens]
Length = 216
Score = 110 bits (274), Expect = 1e-24
Identities = 57/167 (34%), Positives = 98/167 (58%), Gaps = 4/167 (2%)
Query: 5 KKVDLKLIIVGAIGVGKTSLPHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQIWDT 64
K KL+++G VGK+SL ++V F+E ++T+GA+ L++ + L DTT+K +IWDT
Sbjct: 18 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDT 77
Query: 65 GGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPMEQSYPMVLLGN 124
GQER+ S+ +Y+G+ I+ +D+T+ ++F W ++ + P + + L GN
Sbjct: 78 AGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASP---NIVIALAGN 134
Query: 125 KIDLAD-RKVPQEVAQGWCREKDIPYFEVSAKNDINVVQAFEMLASR 170
K DLA R V + AQ + + + + E SAK +NV + F +A +
Sbjct: 135 KADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKK 181
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,483,025
Number of Sequences: 37866
Number of extensions: 237614
Number of successful extensions: 1076
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 604
Number of HSP's gapped (non-prelim): 253
length of query: 199
length of database: 18,247,518
effective HSP length: 97
effective length of query: 102
effective length of database: 14,574,516
effective search space: 1486600632
effective search space used: 1486600632
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.