Guide to the Human Genome
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Name: PFDN4 Sequence: fasta or formatted (134aa) NCBI GI: 12408677
Description:

prefoldin subunit 4

Referenced in:

Heat-Shock Proteins and Chaperonins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.7         13           3
 C cysteine            1.5          2           1
 D aspartate           9.0         12           3
 E glutamate          13.4         18           2
 F phenylalanine       3.0          4           1
 G glycine             1.5          2           1
 H histidine           0.7          1           1
 I isoleucine          7.5         10           1
 K lysine              9.0         12           3
 L leucine             9.0         12           1
 M methionine          3.7          5           1
 N asparagine          5.2          7           1
 P proline             0.7          1           1
 Q glutamine           7.5         10           2
 R arginine            3.0          4           1
 S serine              5.2          7           1
 T threonine           3.7          5           1
 V valine              5.2          7           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   prefoldin subunit 4 
DCTN1                 0.064   dynactin 1 isoform 4 
DCTN1                 0.064   dynactin 1 isoform 3 
DCTN1                 0.064   dynactin 1 isoform 2 
DCTN1                 0.064   dynactin 1 isoform 1 
CLIP1                 0.064   restin isoform b 
CLIP1                 0.064   restin isoform a 
FGL2                  0.060   fibrinogen-like 2 precursor 
CEP120                0.051   coiled-coil domain containing 100 
MYH10                 0.047   myosin, heavy polypeptide 10, non-muscle 
MYH6                  0.047   myosin heavy chain 6 
GOLGA2                0.043   Golgi autoantigen, golgin subfamily a, 2 
EEA1                  0.043   early endosome antigen 1, 162kD 
MYH7B                 0.043   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
C6orf204              0.043   chromosome 6 open reading frame 204 isoform a [Homo...
PDRG1                 0.043   p53 and DNA damage-regulated protein 
MYH13                 0.043   myosin, heavy polypeptide 13, skeletal muscle [Homo...
ERC2                  0.043   cytomatrix protein p110 
GCC2                  0.043   GRIP and coiled-coil domain-containing 2 
KRT71                 0.043   keratin 71 
PMFBP1                0.043   polyamine modulated factor 1 binding protein 1 isof...
PMFBP1                0.043   polyamine modulated factor 1 binding protein 1 isof...
GOLGB1                0.043   golgi autoantigen, golgin subfamily b, macrogolgin ...
KRT1                  0.038   keratin 1 
CCDC158               0.038   coiled-coil domain containing 158 
CGNL1                 0.038   cingulin-like 1 
CCDC147               0.038   coiled-coil domain containing 147 
MYO18A                0.038   myosin 18A isoform b 
MYO18A                0.038   myosin 18A isoform a 
LOC100129791          0.034   PREDICTED: hypothetical protein LOC100129791 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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