Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 38454188
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38454188 RNA binding motif protein 41 [Homo sapiens]
(413 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38454188 RNA binding motif protein 41 [Homo sapiens] 820 0.0
gi|40538732 RNA-binding region (RNP1, RRM) containing 3 [Homo sa... 96 5e-20
gi|9558733 transformer-2 alpha [Homo sapiens] 52 8e-07
gi|38149981 small nuclear ribonucleoprotein polypeptide B'' [Hom... 47 4e-05
gi|4507123 small nuclear ribonucleoprotein polypeptide B'' [Homo... 47 4e-05
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens] 45 9e-05
gi|38201714 ELAV-like 1 [Homo sapiens] 45 1e-04
gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens] 45 1e-04
gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens] 45 1e-04
gi|56118219 insulin-like growth factor 2 mRNA binding protein 2 ... 45 2e-04
gi|64085377 insulin-like growth factor 2 mRNA binding protein 2 ... 45 2e-04
gi|9994185 RNA binding motif protein 7 [Homo sapiens] 45 2e-04
gi|14916461 RNA binding motif protein 18 [Homo sapiens] 44 2e-04
gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens] 44 2e-04
gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens] 44 2e-04
gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens] 44 2e-04
gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens] 44 3e-04
gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens] 44 3e-04
gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens] 44 3e-04
gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens] 44 3e-04
gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens] 44 3e-04
gi|115511032 ELAV (embryonic lethal, abnormal vision, Drosophila... 43 5e-04
gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens] 43 6e-04
gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens] 43 6e-04
gi|4759156 small nuclear ribonucleoprotein polypeptide A [Homo s... 42 0.001
gi|187960109 RNA binding motif protein 28 [Homo sapiens] 42 0.001
gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens] 41 0.002
gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Ho... 41 0.002
gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo... 41 0.002
gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Ho... 41 0.002
>gi|38454188 RNA binding motif protein 41 [Homo sapiens]
Length = 413
Score = 820 bits (2119), Expect = 0.0
Identities = 413/413 (100%), Positives = 413/413 (100%)
Query: 1 MKRVNSCVKSDEHVLEELETEGERQLKSLLQHQLDTSVSIEECMSKKESFAPGTMYKPFG 60
MKRVNSCVKSDEHVLEELETEGERQLKSLLQHQLDTSVSIEECMSKKESFAPGTMYKPFG
Sbjct: 1 MKRVNSCVKSDEHVLEELETEGERQLKSLLQHQLDTSVSIEECMSKKESFAPGTMYKPFG 60
Query: 61 KEAAGTMTLSQFQTLHEKDQETASLRELGLNETEILIWKSHVSGEKKTKLRATPEAIQNR 120
KEAAGTMTLSQFQTLHEKDQETASLRELGLNETEILIWKSHVSGEKKTKLRATPEAIQNR
Sbjct: 61 KEAAGTMTLSQFQTLHEKDQETASLRELGLNETEILIWKSHVSGEKKTKLRATPEAIQNR 120
Query: 121 LQDIEERISERQRILCLPQRFAKSKQLTRREMEIEKSLFQGADRHSFLKALYYQDEPQKK 180
LQDIEERISERQRILCLPQRFAKSKQLTRREMEIEKSLFQGADRHSFLKALYYQDEPQKK
Sbjct: 121 LQDIEERISERQRILCLPQRFAKSKQLTRREMEIEKSLFQGADRHSFLKALYYQDEPQKK 180
Query: 181 NKGDPMNNLESFYQEMIMKKRLEEFQLMRGEPFASHSLVSATSVGDSGTAESPSLLQDKG 240
NKGDPMNNLESFYQEMIMKKRLEEFQLMRGEPFASHSLVSATSVGDSGTAESPSLLQDKG
Sbjct: 181 NKGDPMNNLESFYQEMIMKKRLEEFQLMRGEPFASHSLVSATSVGDSGTAESPSLLQDKG 240
Query: 241 KQAAQGKGPSLHVANVIDFSPEQCWTGPKKLTQPIEFVPEDEIQRNRLSEEEIRKIPMFS 300
KQAAQGKGPSLHVANVIDFSPEQCWTGPKKLTQPIEFVPEDEIQRNRLSEEEIRKIPMFS
Sbjct: 241 KQAAQGKGPSLHVANVIDFSPEQCWTGPKKLTQPIEFVPEDEIQRNRLSEEEIRKIPMFS 300
Query: 301 SYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNK 360
SYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNK
Sbjct: 301 SYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNK 360
Query: 361 EIAWQALHLVNGYKLYGKILVIEFGKNKKQRSNLQATSLISCATGSTTEISGS 413
EIAWQALHLVNGYKLYGKILVIEFGKNKKQRSNLQATSLISCATGSTTEISGS
Sbjct: 361 EIAWQALHLVNGYKLYGKILVIEFGKNKKQRSNLQATSLISCATGSTTEISGS 413
>gi|40538732 RNA-binding region (RNP1, RRM) containing 3 [Homo
sapiens]
Length = 517
Score = 96.3 bits (238), Expect = 5e-20
Identities = 49/125 (39%), Positives = 78/125 (62%), Gaps = 5/125 (4%)
Query: 274 PIEFVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARF- 332
P E + E+++ R+S EE+ + +F SY PGEPN +Y+KNL+ V E+DL +F R+
Sbjct: 385 PSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRIYVKNLAKHVQEKDLKYIFGRYV 444
Query: 333 ---QEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNK 388
E + R+M GRM+GQAFI PN++ A +AL NGY L+GK +V++F ++
Sbjct: 445 DFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSA 504
Query: 389 KQRSN 393
+ + +
Sbjct: 505 RPKQD 509
Score = 44.7 bits (104), Expect = 2e-04
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 300 SSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPN 359
SS +P ++ L +++L +T + L F + ++ GR++ AF TFPN
Sbjct: 18 SSLSPPRGDRTLLVRHLPAELTAEEKEDLLKYFGAQS---VRVLSDKGRLKHTAFATFPN 74
Query: 360 KEIAWQALHLVNGYKLYGKILVIEFGKNK 388
++ A +AL ++ KL G LV+EF K +
Sbjct: 75 EKAAIKALTRLHQLKLLGHTLVVEFAKEQ 103
>gi|9558733 transformer-2 alpha [Homo sapiens]
Length = 282
Score = 52.4 bits (124), Expect = 8e-07
Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 2/114 (1%)
Query: 277 FVPEDEIQRNRL-SEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEK 335
+ PE +R+R S R+ S NP +PN L + LS TERDL +F+R+
Sbjct: 87 YTPEYRRRRSRSHSPMSNRRRHTGSRANP-DPNTCLGVFGLSLYTTERDLREVFSRYGPL 145
Query: 336 KGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKK 389
G + + TGR RG AF+ F + + +A+ NG +L G+ + +++ K+
Sbjct: 146 SGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSITKR 199
>gi|38149981 small nuclear ribonucleoprotein polypeptide B'' [Homo
sapiens]
Length = 225
Score = 46.6 bits (109), Expect = 4e-05
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 307 PNKVLYLKNLSPRVTERDLV-SLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQ 365
PN +Y+ N++ ++ + +L SL+A F + + T +MRGQAF+ F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTN 64
Query: 366 ALHLVNGYKLYGKILVIEFGK 386
AL + G+ YGK + I++ K
Sbjct: 65 ALRQLQGFPFYGKPMRIQYAK 85
Score = 32.3 bits (72), Expect = 0.81
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 307 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQA 366
PN +L+L NL E L LF +F K + R++ GR AF+ F N A A
Sbjct: 149 PNYILFLNNLPEETNEMMLSMLFNQFPGFK----EVRLVPGR-HDIAFVEFENDGQAGAA 203
Query: 367 LHLVNGYKL 375
+ G+K+
Sbjct: 204 RDALQGFKI 212
>gi|4507123 small nuclear ribonucleoprotein polypeptide B'' [Homo
sapiens]
Length = 225
Score = 46.6 bits (109), Expect = 4e-05
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 307 PNKVLYLKNLSPRVTERDLV-SLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQ 365
PN +Y+ N++ ++ + +L SL+A F + + T +MRGQAF+ F +
Sbjct: 5 PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTN 64
Query: 366 ALHLVNGYKLYGKILVIEFGK 386
AL + G+ YGK + I++ K
Sbjct: 65 ALRQLQGFPFYGKPMRIQYAK 85
Score = 32.3 bits (72), Expect = 0.81
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 307 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQA 366
PN +L+L NL E L LF +F K + R++ GR AF+ F N A A
Sbjct: 149 PNYILFLNNLPEETNEMMLSMLFNQFPGFK----EVRLVPGR-HDIAFVEFENDGQAGAA 203
Query: 367 LHLVNGYKL 375
+ G+K+
Sbjct: 204 RDALQGFKI 212
>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
Length = 288
Score = 45.4 bits (106), Expect = 9e-05
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 303 NPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEI 362
NP +PN L + LS TERDL +F+++ I + + R RG AF+ F N +
Sbjct: 113 NP-DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDD 171
Query: 363 AWQALHLVNGYKLYGKILVIEFGKNKK 389
A +A NG +L G+ + ++F K+
Sbjct: 172 AKEAKERANGMELDGRRIRVDFSITKR 198
>gi|38201714 ELAV-like 1 [Homo sapiens]
Length = 326
Score = 45.1 bits (105), Expect = 1e-04
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 311 LYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLV 370
LY+ L +T++D+ +F+RF + TG RG AFI F + A +A+
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 371 NGYKLYG--KILVIEFGKNKKQRSNLQATS 398
NG+K G + + ++F N Q N+ S
Sbjct: 168 NGHKPPGSSEPITVKFAANPNQNKNVALLS 197
Score = 42.4 bits (98), Expect = 8e-04
Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 3/113 (2%)
Query: 282 EIQRNRLSEEEIRKIPMFSSYN-PGEPNK--VLYLKNLSPRVTERDLVSLFARFQEKKGP 338
+ QR R S + + S N PG + +++ NL E L +F F
Sbjct: 214 QAQRFRFSPMGVDHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNV 273
Query: 339 PIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQR 391
+ T + +G F+T N E A A+ +NGY+L KIL + F NK +
Sbjct: 274 KVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK 326
>gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]
Length = 524
Score = 45.1 bits (105), Expect = 1e-04
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 266 TGPKKLTQPIEFVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKV-LYLKNLSPRVTERD 324
TG + L PI V + ++NR + M ++ G + LY+ +L +TE
Sbjct: 214 TGQRVLGVPI-IVQASQAEKNRAAA-------MANNLQKGSAGPMRLYVGSLHFNITEDM 265
Query: 325 LVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGK 378
L +F F + + TGR +G FITF + E A +AL +NG++L G+
Sbjct: 266 LRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 319
>gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens]
Length = 530
Score = 45.1 bits (105), Expect = 1e-04
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 9/114 (7%)
Query: 266 TGPKKLTQPIEFVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKV-LYLKNLSPRVTERD 324
TG + L PI V + ++NR + M ++ G + LY+ +L +TE
Sbjct: 214 TGQRVLGVPI-IVQASQAEKNRAAA-------MANNLQKGSAGPMRLYVGSLHFNITEDM 265
Query: 325 LVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGK 378
L +F F + + TGR +G FITF + E A +AL +NG++L G+
Sbjct: 266 LRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 319
>gi|56118219 insulin-like growth factor 2 mRNA binding protein 2
isoform b [Homo sapiens]
Length = 556
Score = 44.7 bits (104), Expect = 2e-04
Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 13/86 (15%)
Query: 311 LYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRM---RGQAFITFPNKEIAWQAL 367
LY+ NLSP VT DL LF ++K P + G++ G AF+ +P++ A +A+
Sbjct: 5 LYIGNLSPAVTADDLRQLFG---DRKLP------LAGQVLLKSGYAFVDYPDQNWAIRAI 55
Query: 368 HLVNG-YKLYGKILVIEFGKNKKQRS 392
++G +L+GKI+ +++ +KK RS
Sbjct: 56 ETLSGKVELHGKIMEVDYSVSKKLRS 81
>gi|64085377 insulin-like growth factor 2 mRNA binding protein 2
isoform a [Homo sapiens]
Length = 599
Score = 44.7 bits (104), Expect = 2e-04
Identities = 30/86 (34%), Positives = 51/86 (59%), Gaps = 13/86 (15%)
Query: 311 LYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRM---RGQAFITFPNKEIAWQAL 367
LY+ NLSP VT DL LF ++K P + G++ G AF+ +P++ A +A+
Sbjct: 5 LYIGNLSPAVTADDLRQLFG---DRKLP------LAGQVLLKSGYAFVDYPDQNWAIRAI 55
Query: 368 HLVNG-YKLYGKILVIEFGKNKKQRS 392
++G +L+GKI+ +++ +KK RS
Sbjct: 56 ETLSGKVELHGKIMEVDYSVSKKLRS 81
>gi|9994185 RNA binding motif protein 7 [Homo sapiens]
Length = 266
Score = 44.7 bits (104), Expect = 2e-04
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 306 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRM---MTGRMRGQAFITFPNKEI 362
E ++ L++ NL +VTE L LF + GP I+ ++ G+ + AF+ F ++
Sbjct: 7 EADRTLFVGNLETKVTEELLFELF----HQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVS 62
Query: 363 AWQALHLVNGYKLYGKILVIEF 384
A++L+NG KLYG+ + I+F
Sbjct: 63 VPYAMNLLNGIKLYGRPIKIQF 84
>gi|14916461 RNA binding motif protein 18 [Homo sapiens]
Length = 190
Score = 44.3 bits (103), Expect = 2e-04
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 311 LYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRM---MTGRMRGQAFITFPNKEIAWQAL 367
L++ NL P++TE L+ L +F + K F + G+ RG F+ F K+ A QA+
Sbjct: 27 LWIGNLDPKITEYHLLKLLQKFGKVKQFDFLFHKSGALEGQPRGYCFVNFETKQEAEQAI 86
Query: 368 HLVNGYKLYGKILVIEFGKNKKQR 391
+NG K LV+ + + +R
Sbjct: 87 QCLNGKLALSKKLVVRWAHAQVKR 110
>gi|116734698 RNA binding motif protein 23 isoform 3 [Homo sapiens]
Length = 405
Score = 44.3 bits (103), Expect = 2e-04
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 9/114 (7%)
Query: 266 TGPKKLTQPIEFVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKV-LYLKNLSPRVTERD 324
TG + L PI V + ++NRL+ M ++ G + LY+ +L +TE
Sbjct: 193 TGQRLLGVPI-IVQASQAEKNRLAA-------MANNLQKGNGGPMRLYVGSLHFNITEDM 244
Query: 325 LVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGK 378
L +F F + + TGR +G FITF + E A +AL +NG++L G+
Sbjct: 245 LRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGR 298
>gi|116734696 RNA binding motif protein 23 isoform 1 [Homo sapiens]
Length = 439
Score = 44.3 bits (103), Expect = 2e-04
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 9/114 (7%)
Query: 266 TGPKKLTQPIEFVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKV-LYLKNLSPRVTERD 324
TG + L PI V + ++NRL+ M ++ G + LY+ +L +TE
Sbjct: 227 TGQRLLGVPI-IVQASQAEKNRLAA-------MANNLQKGNGGPMRLYVGSLHFNITEDM 278
Query: 325 LVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGK 378
L +F F + + TGR +G FITF + E A +AL +NG++L G+
Sbjct: 279 LRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGR 332
>gi|116734694 RNA binding motif protein 23 isoform 2 [Homo sapiens]
Length = 423
Score = 44.3 bits (103), Expect = 2e-04
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 9/114 (7%)
Query: 266 TGPKKLTQPIEFVPEDEIQRNRLSEEEIRKIPMFSSYNPGEPNKV-LYLKNLSPRVTERD 324
TG + L PI V + ++NRL+ M ++ G + LY+ +L +TE
Sbjct: 211 TGQRLLGVPI-IVQASQAEKNRLAA-------MANNLQKGNGGPMRLYVGSLHFNITEDM 262
Query: 325 LVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGK 378
L +F F + + TGR +G FITF + E A +AL +NG++L G+
Sbjct: 263 LRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGR 316
>gi|221316765 ELAV-like 4 isoform 1 [Homo sapiens]
Length = 380
Score = 43.9 bits (102), Expect = 3e-04
Identities = 25/82 (30%), Positives = 40/82 (48%)
Query: 311 LYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLV 370
+++ NLSP E L LF F + T + +G F+T N + A A+ +
Sbjct: 299 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 358
Query: 371 NGYKLYGKILVIEFGKNKKQRS 392
NGY+L ++L + F NK +S
Sbjct: 359 NGYRLGDRVLQVSFKTNKAHKS 380
Score = 40.4 bits (93), Expect = 0.003
Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 21/171 (12%)
Query: 225 GDSGTAESPSLLQDKGKQAAQGKGPSLHVANVIDFSPEQCWTGPKKLTQPIEFVPEDEIQ 284
G G ES L++DK + G G N ID PK + I + +Q
Sbjct: 67 GSIGEIESCKLVRDKITGQSLGYG----FVNYID---------PKDAEKAINTLNGLRLQ 113
Query: 285 RNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRM 344
+ R SS + + N LY+ L +T+++L LF+++ I
Sbjct: 114 TKTIKVSYARP----SSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ 167
Query: 345 MTGRMRGQAFITFPNKEIAWQALHLVNGYKLYG--KILVIEFGKNKKQRSN 393
+TG RG FI F + A +A+ +NG K G + + ++F N Q+S+
Sbjct: 168 VTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSS 218
Score = 33.5 bits (75), Expect = 0.36
Identities = 19/90 (21%), Positives = 42/90 (46%)
Query: 297 PMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFIT 356
PM + + L + L +T+ + SLF E + + +TG+ G F+
Sbjct: 34 PMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVN 93
Query: 357 FPNKEIAWQALHLVNGYKLYGKILVIEFGK 386
+ + + A +A++ +NG +L K + + + +
Sbjct: 94 YIDPKDAEKAINTLNGLRLQTKTIKVSYAR 123
>gi|221316773 ELAV-like 4 isoform 5 [Homo sapiens]
Length = 369
Score = 43.9 bits (102), Expect = 3e-04
Identities = 25/82 (30%), Positives = 40/82 (48%)
Query: 311 LYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLV 370
+++ NLSP E L LF F + T + +G F+T N + A A+ +
Sbjct: 288 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 347
Query: 371 NGYKLYGKILVIEFGKNKKQRS 392
NGY+L ++L + F NK +S
Sbjct: 348 NGYRLGDRVLQVSFKTNKAHKS 369
Score = 40.4 bits (93), Expect = 0.003
Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 21/171 (12%)
Query: 225 GDSGTAESPSLLQDKGKQAAQGKGPSLHVANVIDFSPEQCWTGPKKLTQPIEFVPEDEIQ 284
G G ES L++DK + G G N ID PK + I + +Q
Sbjct: 70 GSIGEIESCKLVRDKITGQSLGYG----FVNYID---------PKDAEKAINTLNGLRLQ 116
Query: 285 RNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRM 344
+ R SS + + N LY+ L +T+++L LF+++ I
Sbjct: 117 TKTIKVSYARP----SSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ 170
Query: 345 MTGRMRGQAFITFPNKEIAWQALHLVNGYKLYG--KILVIEFGKNKKQRSN 393
+TG RG FI F + A +A+ +NG K G + + ++F N Q+S+
Sbjct: 171 VTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSS 221
Score = 33.5 bits (75), Expect = 0.36
Identities = 19/90 (21%), Positives = 42/90 (46%)
Query: 297 PMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFIT 356
PM + + L + L +T+ + SLF E + + +TG+ G F+
Sbjct: 37 PMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVN 96
Query: 357 FPNKEIAWQALHLVNGYKLYGKILVIEFGK 386
+ + + A +A++ +NG +L K + + + +
Sbjct: 97 YIDPKDAEKAINTLNGLRLQTKTIKVSYAR 126
>gi|221316771 ELAV-like 4 isoform 4 [Homo sapiens]
Length = 366
Score = 43.9 bits (102), Expect = 3e-04
Identities = 25/82 (30%), Positives = 40/82 (48%)
Query: 311 LYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLV 370
+++ NLSP E L LF F + T + +G F+T N + A A+ +
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 371 NGYKLYGKILVIEFGKNKKQRS 392
NGY+L ++L + F NK +S
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHKS 366
Score = 40.4 bits (93), Expect = 0.003
Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 21/171 (12%)
Query: 225 GDSGTAESPSLLQDKGKQAAQGKGPSLHVANVIDFSPEQCWTGPKKLTQPIEFVPEDEIQ 284
G G ES L++DK + G G N ID PK + I + +Q
Sbjct: 67 GSIGEIESCKLVRDKITGQSLGYG----FVNYID---------PKDAEKAINTLNGLRLQ 113
Query: 285 RNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRM 344
+ R SS + + N LY+ L +T+++L LF+++ I
Sbjct: 114 TKTIKVSYARP----SSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ 167
Query: 345 MTGRMRGQAFITFPNKEIAWQALHLVNGYKLYG--KILVIEFGKNKKQRSN 393
+TG RG FI F + A +A+ +NG K G + + ++F N Q+S+
Sbjct: 168 VTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSS 218
Score = 33.5 bits (75), Expect = 0.36
Identities = 19/90 (21%), Positives = 42/90 (46%)
Query: 297 PMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFIT 356
PM + + L + L +T+ + SLF E + + +TG+ G F+
Sbjct: 34 PMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVN 93
Query: 357 FPNKEIAWQALHLVNGYKLYGKILVIEFGK 386
+ + + A +A++ +NG +L K + + + +
Sbjct: 94 YIDPKDAEKAINTLNGLRLQTKTIKVSYAR 123
>gi|221316769 ELAV-like 4 isoform 3 [Homo sapiens]
Length = 383
Score = 43.9 bits (102), Expect = 3e-04
Identities = 25/82 (30%), Positives = 40/82 (48%)
Query: 311 LYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLV 370
+++ NLSP E L LF F + T + +G F+T N + A A+ +
Sbjct: 302 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 361
Query: 371 NGYKLYGKILVIEFGKNKKQRS 392
NGY+L ++L + F NK +S
Sbjct: 362 NGYRLGDRVLQVSFKTNKAHKS 383
Score = 40.4 bits (93), Expect = 0.003
Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 21/171 (12%)
Query: 225 GDSGTAESPSLLQDKGKQAAQGKGPSLHVANVIDFSPEQCWTGPKKLTQPIEFVPEDEIQ 284
G G ES L++DK + G G N ID PK + I + +Q
Sbjct: 84 GSIGEIESCKLVRDKITGQSLGYG----FVNYID---------PKDAEKAINTLNGLRLQ 130
Query: 285 RNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRM 344
+ R SS + + N LY+ L +T+++L LF+++ I
Sbjct: 131 TKTIKVSYARP----SSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ 184
Query: 345 MTGRMRGQAFITFPNKEIAWQALHLVNGYKLYG--KILVIEFGKNKKQRSN 393
+TG RG FI F + A +A+ +NG K G + + ++F N Q+S+
Sbjct: 185 VTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSS 235
Score = 33.5 bits (75), Expect = 0.36
Identities = 19/90 (21%), Positives = 42/90 (46%)
Query: 297 PMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFIT 356
PM + + L + L +T+ + SLF E + + +TG+ G F+
Sbjct: 51 PMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVN 110
Query: 357 FPNKEIAWQALHLVNGYKLYGKILVIEFGK 386
+ + + A +A++ +NG +L K + + + +
Sbjct: 111 YIDPKDAEKAINTLNGLRLQTKTIKVSYAR 140
>gi|221316767 ELAV-like 4 isoform 2 [Homo sapiens]
Length = 366
Score = 43.9 bits (102), Expect = 3e-04
Identities = 25/82 (30%), Positives = 40/82 (48%)
Query: 311 LYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLV 370
+++ NLSP E L LF F + T + +G F+T N + A A+ +
Sbjct: 285 IFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 344
Query: 371 NGYKLYGKILVIEFGKNKKQRS 392
NGY+L ++L + F NK +S
Sbjct: 345 NGYRLGDRVLQVSFKTNKAHKS 366
Score = 40.4 bits (93), Expect = 0.003
Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 21/171 (12%)
Query: 225 GDSGTAESPSLLQDKGKQAAQGKGPSLHVANVIDFSPEQCWTGPKKLTQPIEFVPEDEIQ 284
G G ES L++DK + G G N ID PK + I + +Q
Sbjct: 67 GSIGEIESCKLVRDKITGQSLGYG----FVNYID---------PKDAEKAINTLNGLRLQ 113
Query: 285 RNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRM 344
+ R SS + + N LY+ L +T+++L LF+++ I
Sbjct: 114 TKTIKVSYARP----SSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ 167
Query: 345 MTGRMRGQAFITFPNKEIAWQALHLVNGYKLYG--KILVIEFGKNKKQRSN 393
+TG RG FI F + A +A+ +NG K G + + ++F N Q+S+
Sbjct: 168 VTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSS 218
Score = 33.5 bits (75), Expect = 0.36
Identities = 19/90 (21%), Positives = 42/90 (46%)
Query: 297 PMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFIT 356
PM + + L + L +T+ + SLF E + + +TG+ G F+
Sbjct: 34 PMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVN 93
Query: 357 FPNKEIAWQALHLVNGYKLYGKILVIEFGK 386
+ + + A +A++ +NG +L K + + + +
Sbjct: 94 YIDPKDAEKAINTLNGLRLQTKTIKVSYAR 123
>gi|115511032 ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B) [Homo sapiens]
Length = 359
Score = 43.1 bits (100), Expect = 5e-04
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 304 PGEPNK--VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKE 361
PG P +++ NL+P E L +F F + T + +G F+T N +
Sbjct: 269 PGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYD 328
Query: 362 IAWQALHLVNGYKLYGKILVIEFGKNKKQRS 392
A A+ +NGY+L ++L + F NK ++
Sbjct: 329 EAAMAIASLNGYRLGDRVLQVSFKTNKTHKA 359
Score = 40.8 bits (94), Expect = 0.002
Identities = 45/171 (26%), Positives = 73/171 (42%), Gaps = 21/171 (12%)
Query: 225 GDSGTAESPSLLQDKGKQAAQGKGPSLHVANVIDFSPEQCWTGPKKLTQPIEFVPEDEIQ 284
G G ES L++DK + G G N ID PK + I + +Q
Sbjct: 60 GSIGEIESCKLVRDKITGQSLGYG----FVNYID---------PKDAEKAINTLNGLRLQ 106
Query: 285 RNRLSEEEIRKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRM 344
+ R SS + + N LY+ L +T+++L LF+++ I
Sbjct: 107 TKTIKVSYARP----SSASIRDAN--LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ 160
Query: 345 MTGRMRGQAFITFPNKEIAWQALHLVNGYKLYG--KILVIEFGKNKKQRSN 393
+TG RG FI F + A +A+ +NG K G + + ++F N Q++N
Sbjct: 161 VTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTN 211
Score = 34.7 bits (78), Expect = 0.16
Identities = 20/82 (24%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 306 EPNKVLYLKNLSPR-VTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAW 364
E +K + N P+ +T+ +L SLF E + + +TG+ G F+ + + + A
Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 365 QALHLVNGYKLYGKILVIEFGK 386
+A++ +NG +L K + + + +
Sbjct: 95 KAINTLNGLRLQTKTIKVSYAR 116
>gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]
Length = 367
Score = 42.7 bits (99), Expect = 6e-04
Identities = 23/82 (28%), Positives = 41/82 (50%)
Query: 311 LYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLV 370
+++ NLSP E L LF F + T + +G F+T N + A A+ +
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 371 NGYKLYGKILVIEFGKNKKQRS 392
NGY+L ++L + F +K+ ++
Sbjct: 346 NGYRLGERVLQVSFKTSKQHKA 367
Score = 36.2 bits (82), Expect = 0.056
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 311 LYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLV 370
LY+ L ++++++ LF+++ I +TG RG FI F + A +A+ +
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 371 NGYKLYG--KILVIEFGKNKKQRS 392
NG K G + + ++F N Q++
Sbjct: 187 NGQKPLGAAEPITVKFANNPSQKT 210
Score = 33.1 bits (74), Expect = 0.47
Identities = 19/91 (20%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 297 PMFSSYNPGEPNKVLYLKNLSPR-VTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFI 355
P+ + + +K + N P+ +T+ + SLF + + + +TG+ G F+
Sbjct: 26 PLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFV 85
Query: 356 TFPNKEIAWQALHLVNGYKLYGKILVIEFGK 386
+ + A +A++ +NG KL K + + + +
Sbjct: 86 NYSDPNDADKAINTLNGLKLQTKTIKVSYAR 116
>gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]
Length = 360
Score = 42.7 bits (99), Expect = 6e-04
Identities = 23/82 (28%), Positives = 41/82 (50%)
Query: 311 LYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLV 370
+++ NLSP E L LF F + T + +G F+T N + A A+ +
Sbjct: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 371 NGYKLYGKILVIEFGKNKKQRS 392
NGY+L ++L + F +K+ ++
Sbjct: 339 NGYRLGERVLQVSFKTSKQHKA 360
Score = 36.2 bits (82), Expect = 0.056
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 311 LYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLV 370
LY+ L ++++++ LF+++ I +TG RG FI F + A +A+ +
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 371 NGYKLYG--KILVIEFGKNKKQRS 392
NG K G + + ++F N Q++
Sbjct: 187 NGQKPLGAAEPITVKFANNPSQKT 210
Score = 33.1 bits (74), Expect = 0.47
Identities = 19/91 (20%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 297 PMFSSYNPGEPNKVLYLKNLSPR-VTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFI 355
P+ + + +K + N P+ +T+ + SLF + + + +TG+ G F+
Sbjct: 26 PLLGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFV 85
Query: 356 TFPNKEIAWQALHLVNGYKLYGKILVIEFGK 386
+ + A +A++ +NG KL K + + + +
Sbjct: 86 NYSDPNDADKAINTLNGLKLQTKTIKVSYAR 116
>gi|4759156 small nuclear ribonucleoprotein polypeptide A [Homo
sapiens]
Length = 282
Score = 41.6 bits (96), Expect = 0.001
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 307 PNKVLYLKNLSPRVTERDLV-SLFARFQEKKGPPIQFRMMTG-RMRGQAFITFPNKEIAW 364
PN +Y+ NL+ ++ + +L SL+A F + G + + +MRGQAF+ F A
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQF-GQILDILVSRSLKMRGQAFVIFKEVSSAT 66
Query: 365 QALHLVNGYKLYGKILVIEFGK 386
AL + G+ Y K + I++ K
Sbjct: 67 NALRSMQGFPFYDKPMRIQYAK 88
Score = 33.9 bits (76), Expect = 0.28
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 301 SYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNK 360
S NP PN +L+L NL E L LF +F K + R++ GR AF+ F N+
Sbjct: 202 SENP--PNHILFLTNLPEETNELMLSMLFNQFPGFK----EVRLVPGR-HDIAFVEFDNE 254
Query: 361 EIAWQALHLVNGYKL-YGKILVIEFGK 386
A A + G+K+ + I F K
Sbjct: 255 VQAGAARDALQGFKITQNNAMKISFAK 281
>gi|187960109 RNA binding motif protein 28 [Homo sapiens]
Length = 759
Score = 41.6 bits (96), Expect = 0.001
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 294 RKIPMFSSYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQA 353
+K P + L ++NLS + +E DL ++FA+F I R G+MRG
Sbjct: 99 KKEPKAKKAKVADKKARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIP-RKPDGKMRGFG 157
Query: 354 FITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQRSNLQATSLI 400
F+ F N A +AL +N ++ G+ + +++ K + + Q+ S I
Sbjct: 158 FVQFKNLLEAGKALKGMNMKEIKGRTVAVDWAVAKDKYKDTQSVSAI 204
>gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens]
Length = 577
Score = 40.8 bits (94), Expect = 0.002
Identities = 22/90 (24%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 311 LYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQA 366
+++ N+ TE L +F+ GP + FR++ TG+ +G F + ++E A A
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEV----GPVVSFRLVYDRETGKPKGYGFCEYQDQETALSA 73
Query: 367 LHLVNGYKLYGKILVIEFGKNKKQRSNLQA 396
+ +NG + G+ L ++ ++K + L++
Sbjct: 74 MRNLNGREFSGRALRVDNAASEKNKEELKS 103
>gi|208431836 poly A binding protein, cytoplasmic 4 isoform 3 [Homo
sapiens]
Length = 631
Score = 40.8 bits (94), Expect = 0.002
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 311 LYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLV 370
+Y+KN V + L LF++F + + R G+ +G F+++ E A +A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVM-RDPNGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 371 NGYKLYGKILVIEFGKNKKQR 391
NG ++ GKI+ + + K +R
Sbjct: 252 NGKEISGKIIFVGRAQKKVER 272
Score = 30.4 bits (67), Expect = 3.1
Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 311 LYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGR--MRGQAFITFPNKEIAWQALH 368
+++KNL + + L F+ F G + +++ +G AF+ F +E A +A+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAF----GNILSCKVVCDENGSKGYAFVHFETQEAADKAIE 156
Query: 369 LVNGYKLYGKILVIEFGKNKKQR 391
+NG L + + + K++K+R
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRKER 179
>gi|4504715 poly A binding protein, cytoplasmic 4 isoform 2 [Homo
sapiens]
Length = 644
Score = 40.8 bits (94), Expect = 0.002
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 311 LYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLV 370
+Y+KN V + L LF++F + + R G+ +G F+++ E A +A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVM-RDPNGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 371 NGYKLYGKILVIEFGKNKKQR 391
NG ++ GKI+ + + K +R
Sbjct: 252 NGKEISGKIIFVGRAQKKVER 272
Score = 30.4 bits (67), Expect = 3.1
Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 311 LYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGR--MRGQAFITFPNKEIAWQALH 368
+++KNL + + L F+ F G + +++ +G AF+ F +E A +A+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAF----GNILSCKVVCDENGSKGYAFVHFETQEAADKAIE 156
Query: 369 LVNGYKLYGKILVIEFGKNKKQR 391
+NG L + + + K++K+R
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRKER 179
>gi|208431833 poly A binding protein, cytoplasmic 4 isoform 1 [Homo
sapiens]
Length = 660
Score = 40.8 bits (94), Expect = 0.002
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 311 LYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLV 370
+Y+KN V + L LF++F + + R G+ +G F+++ E A +A+ +
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVM-RDPNGKSKGFGFVSYEKHEDANKAVEEM 251
Query: 371 NGYKLYGKILVIEFGKNKKQR 391
NG ++ GKI+ + + K +R
Sbjct: 252 NGKEISGKIIFVGRAQKKVER 272
Score = 30.4 bits (67), Expect = 3.1
Identities = 20/83 (24%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 311 LYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGR--MRGQAFITFPNKEIAWQALH 368
+++KNL + + L F+ F G + +++ +G AF+ F +E A +A+
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAF----GNILSCKVVCDENGSKGYAFVHFETQEAADKAIE 156
Query: 369 LVNGYKLYGKILVIEFGKNKKQR 391
+NG L + + + K++K+R
Sbjct: 157 KMNGMLLNDRKVFVGRFKSRKER 179
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.130 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,821,834
Number of Sequences: 37866
Number of extensions: 718758
Number of successful extensions: 2239
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 113
Number of HSP's that attempted gapping in prelim test: 2009
Number of HSP's gapped (non-prelim): 328
length of query: 413
length of database: 18,247,518
effective HSP length: 105
effective length of query: 308
effective length of database: 14,271,588
effective search space: 4395649104
effective search space used: 4395649104
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.