Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TTC25 Sequence: fasta or formatted (672aa) NCBI GI: 13899233
Description:

tetratricopeptide repeat domain 25

Referenced in:

Tetratricopeptide Domains

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         50           2
 C cysteine            1.0          7           1
 D aspartate           5.7         38           2
 E glutamate          12.5         84           3
 F phenylalanine       2.8         19           1
 G glycine             6.8         46           2
 H histidine           1.5         10           1
 I isoleucine          4.0         27           2
 K lysine              9.5         64           2
 L leucine            10.7         72           3
 M methionine          1.8         12           1
 N asparagine          3.4         23           2
 P proline             2.8         19           1
 Q glutamine           5.5         37           2
 R arginine            6.2         42           2
 S serine              6.7         45           2
 T threonine           3.6         24           2
 V valine              3.7         25           2
 W tryptophan          1.3          9           1
 Y tyrosine            2.8         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tetratricopeptide repeat domain 25 
STIP1                 0.025   stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizi...
TTC28                 0.024   tetratricopeptide repeat domain 28 
MYH13                 0.023   myosin, heavy polypeptide 13, skeletal muscle [Homo...
GPSM2                 0.022   LGN protein 
PLEC1                 0.019   plectin 1 isoform 11 
PLEC1                 0.019   plectin 1 isoform 10 
PLEC1                 0.019   plectin 1 isoform 8 
PLEC1                 0.019   plectin 1 isoform 7 
PLEC1                 0.019   plectin 1 isoform 6 
PLEC1                 0.019   plectin 1 isoform 3 
PLEC1                 0.019   plectin 1 isoform 2 
PLEC1                 0.019   plectin 1 isoform 1 
GPSM1                 0.018   G-protein signaling modulator 1 (AGS3-like, C. eleg...
GPSM1                 0.018   G-protein signaling modulator 1 (AGS3-like, C. eleg...
CGN                   0.018   cingulin 
MYH6                  0.018   myosin heavy chain 6 
NUMA1                 0.016   nuclear mitotic apparatus protein 1 
MYH1                  0.016   myosin, heavy chain 1, skeletal muscle, adult [Homo...
LOC283685             0.016   PREDICTED: golgi autoantigen, golgin subfamily a-li...
MYH15                 0.015   myosin, heavy polypeptide 15 
MYH7                  0.015   myosin, heavy chain 7, cardiac muscle, beta 
UNC45A                0.015   smooth muscle cell associated protein-1 isoform 3 [H...
UNC45A                0.015   smooth muscle cell associated protein-1 isoform 2 [H...
RPGR                  0.015   retinitis pigmentosa GTPase regulator isoform C [Hom...
WDR87                 0.015   NYD-SP11 protein 
MYH8                  0.015   myosin, heavy chain 8, skeletal muscle, perinatal [...
MYH4                  0.015   myosin, heavy polypeptide 4, skeletal muscle 
LOC283685             0.014   PREDICTED: golgi autoantigen, golgin subfamily a-li...
SGTA                  0.014   small glutamine-rich tetratricopeptide 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press