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Search of human proteins with 38016943
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38016943 calcium release-activated calcium channel protein 1
[Homo sapiens]
(301 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38016943 calcium release-activated calcium channel protein 1 ... 609 e-174
gi|187607422 ORAI calcium release-activated calcium modulator 2 ... 313 9e-86
gi|14249538 ORAI calcium release-activated calcium modulator 2 [... 313 9e-86
gi|22748651 ORAI calcium release-activated calcium modulator 3 [... 302 2e-82
gi|57977325 membrane-associated ring finger (C3HC4) 4 [Homo sapi... 40 0.002
gi|11386183 WAS protein family, member 2 [Homo sapiens] 40 0.003
gi|226498192 atonal homolog 8 [Homo sapiens] 39 0.006
gi|11415052 retinoid X receptor, beta [Homo sapiens] 39 0.007
gi|40353727 synaptopodin isoform A [Homo sapiens] 39 0.007
gi|91199543 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo s... 38 0.013
gi|33636768 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo s... 38 0.013
gi|4504465 homeobox B2 [Homo sapiens] 38 0.013
gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens] 37 0.016
gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens] 37 0.016
gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens] 37 0.016
gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens] 37 0.016
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 37 0.021
gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo sap... 37 0.028
gi|169210192 PREDICTED: hypothetical protein [Homo sapiens] 37 0.028
gi|113425957 PREDICTED: hypothetical protein [Homo sapiens] 37 0.028
gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 36 0.036
gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1 iso... 36 0.036
gi|32307177 forkhead box G1 [Homo sapiens] 36 0.036
gi|153281158 dual specificity phosphatase 8 [Homo sapiens] 36 0.036
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 36 0.036
gi|161169015 neuron navigator 2 isoform 3 [Homo sapiens] 36 0.036
gi|161169013 neuron navigator 2 isoform 1 [Homo sapiens] 36 0.036
gi|38044282 neuron navigator 2 isoform 2 [Homo sapiens] 36 0.036
gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens] 36 0.036
gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens] 36 0.036
>gi|38016943 calcium release-activated calcium channel protein 1
[Homo sapiens]
Length = 301
Score = 609 bits (1570), Expect = e-174
Identities = 301/301 (100%), Positives = 301/301 (100%)
Query: 1 MHPEPAPPPSRSSPELPPSGGSTTSGSRRSRRRSGDGEPPGAPPPPPSAVTYPDWIGQSY 60
MHPEPAPPPSRSSPELPPSGGSTTSGSRRSRRRSGDGEPPGAPPPPPSAVTYPDWIGQSY
Sbjct: 1 MHPEPAPPPSRSSPELPPSGGSTTSGSRRSRRRSGDGEPPGAPPPPPSAVTYPDWIGQSY 60
Query: 61 SEVMSLNEHSMQALSWRKLYLSRAKLKASSRTSALLSGFAMVAMVEVQLDADHDYPPGLL 120
SEVMSLNEHSMQALSWRKLYLSRAKLKASSRTSALLSGFAMVAMVEVQLDADHDYPPGLL
Sbjct: 61 SEVMSLNEHSMQALSWRKLYLSRAKLKASSRTSALLSGFAMVAMVEVQLDADHDYPPGLL 120
Query: 121 IAFSACTTVLVAVHLFALMISTCILPNIEAVSNVHNLNSVKESPHERMHRHIELAWAFST 180
IAFSACTTVLVAVHLFALMISTCILPNIEAVSNVHNLNSVKESPHERMHRHIELAWAFST
Sbjct: 121 IAFSACTTVLVAVHLFALMISTCILPNIEAVSNVHNLNSVKESPHERMHRHIELAWAFST 180
Query: 181 VIGTLLFLAEVVLLCWVKFLPLKKQPGQPRPTSKPPASGAAANVSTSGITPGQAAAIAST 240
VIGTLLFLAEVVLLCWVKFLPLKKQPGQPRPTSKPPASGAAANVSTSGITPGQAAAIAST
Sbjct: 181 VIGTLLFLAEVVLLCWVKFLPLKKQPGQPRPTSKPPASGAAANVSTSGITPGQAAAIAST 240
Query: 241 TIMVPFGLIFIVFAVHFYRSLVSHKTDRQFQELNELAEFARLQDQLDHRGDHPLTPGSHY 300
TIMVPFGLIFIVFAVHFYRSLVSHKTDRQFQELNELAEFARLQDQLDHRGDHPLTPGSHY
Sbjct: 241 TIMVPFGLIFIVFAVHFYRSLVSHKTDRQFQELNELAEFARLQDQLDHRGDHPLTPGSHY 300
Query: 301 A 301
A
Sbjct: 301 A 301
>gi|187607422 ORAI calcium release-activated calcium modulator 2
[Homo sapiens]
Length = 254
Score = 313 bits (803), Expect = 9e-86
Identities = 164/254 (64%), Positives = 192/254 (75%), Gaps = 20/254 (7%)
Query: 36 DGEPPGAPPPPPSAVTYPDWIGQSYSEVMSLNEHSMQALSWRKLYLSRAKLKASSRTSAL 95
D P P P + Y DW+ +SY E+++ N HS+QALSWRKLYLSRAKLKASSRTSAL
Sbjct: 10 DPSAPACPEPGHKGMDYRDWVRRSYLELVTSNHHSVQALSWRKLYLSRAKLKASSRTSAL 69
Query: 96 LSGFAMVAMVEVQLDADHDYPPGLLIAFSACTTVLVAVHLFALMISTCILPNIEAVSNVH 155
LSGFAMVAMVEVQL+ + YP LLIAFSACTTVLVAVHLFAL+ISTCILPN+EAVSN+H
Sbjct: 70 LSGFAMVAMVEVQLETQYQYPRPLLIAFSACTTVLVAVHLFALLISTCILPNVEAVSNIH 129
Query: 156 NLNSVKESPHERMHRHIELAWAFSTVIGTLLFLAEVVLLCWVKFLPL--KKQPGQPRPTS 213
NLNS+ ESPHERMH +IELAW FSTV+G LLFLAEVVLLCW+KFLP+ ++QPG
Sbjct: 130 NLNSISESPHERMHPYIELAWGFSTVLGILLFLAEVVLLCWIKFLPVDARRQPG------ 183
Query: 214 KPPASGAAANVSTSGITPGQAAAIASTTIMVPFGLIFIVFAVHFYRSLVSHKTDRQFQEL 273
PP G+ G AA+ ST IMVP GLIF+VF +HFYRSLV HKT+R +E+
Sbjct: 184 PPPGPGSHT---------GWQAALVSTIIMVPVGLIFVVFTIHFYRSLVRHKTERHNREI 234
Query: 274 NELAEFARLQDQLD 287
EL +L+ QLD
Sbjct: 235 EEL---HKLKVQLD 245
>gi|14249538 ORAI calcium release-activated calcium modulator 2
[Homo sapiens]
Length = 254
Score = 313 bits (803), Expect = 9e-86
Identities = 164/254 (64%), Positives = 192/254 (75%), Gaps = 20/254 (7%)
Query: 36 DGEPPGAPPPPPSAVTYPDWIGQSYSEVMSLNEHSMQALSWRKLYLSRAKLKASSRTSAL 95
D P P P + Y DW+ +SY E+++ N HS+QALSWRKLYLSRAKLKASSRTSAL
Sbjct: 10 DPSAPACPEPGHKGMDYRDWVRRSYLELVTSNHHSVQALSWRKLYLSRAKLKASSRTSAL 69
Query: 96 LSGFAMVAMVEVQLDADHDYPPGLLIAFSACTTVLVAVHLFALMISTCILPNIEAVSNVH 155
LSGFAMVAMVEVQL+ + YP LLIAFSACTTVLVAVHLFAL+ISTCILPN+EAVSN+H
Sbjct: 70 LSGFAMVAMVEVQLETQYQYPRPLLIAFSACTTVLVAVHLFALLISTCILPNVEAVSNIH 129
Query: 156 NLNSVKESPHERMHRHIELAWAFSTVIGTLLFLAEVVLLCWVKFLPL--KKQPGQPRPTS 213
NLNS+ ESPHERMH +IELAW FSTV+G LLFLAEVVLLCW+KFLP+ ++QPG
Sbjct: 130 NLNSISESPHERMHPYIELAWGFSTVLGILLFLAEVVLLCWIKFLPVDARRQPG------ 183
Query: 214 KPPASGAAANVSTSGITPGQAAAIASTTIMVPFGLIFIVFAVHFYRSLVSHKTDRQFQEL 273
PP G+ G AA+ ST IMVP GLIF+VF +HFYRSLV HKT+R +E+
Sbjct: 184 PPPGPGSHT---------GWQAALVSTIIMVPVGLIFVVFTIHFYRSLVRHKTERHNREI 234
Query: 274 NELAEFARLQDQLD 287
EL +L+ QLD
Sbjct: 235 EEL---HKLKVQLD 245
>gi|22748651 ORAI calcium release-activated calcium modulator 3
[Homo sapiens]
Length = 295
Score = 302 bits (774), Expect = 2e-82
Identities = 160/275 (58%), Positives = 200/275 (72%), Gaps = 37/275 (13%)
Query: 46 PPSAVTYPDWIGQSYSEVMSLNEHSMQALSWRKLYLSRAKLKASSRTSALLSGFAMVAMV 105
P + TY +++ + Y ++M ++HS++ALSWR+LYLSRAKLKASSRTSALLSGFAMVAMV
Sbjct: 21 PAGSATYREFVHRGYLDLMGASQHSLRALSWRRLYLSRAKLKASSRTSALLSGFAMVAMV 80
Query: 106 EVQLDADHDYPPGLLIAFSACTTVLVAVHLFALMISTCILPNIEAVSNVHNLNSVKESPH 165
EVQL++DH+YPPGLL+AFSACTTVLVAVHLFALM+STC+LP+IEAVSN+HNLNSV +SPH
Sbjct: 81 EVQLESDHEYPPGLLVAFSACTTVLVAVHLFALMVSTCLLPHIEAVSNIHNLNSVHQSPH 140
Query: 166 ERMHRHIELAWAFSTVIGTLLFLAEVVLLCWVKFLPLKKQPGQPR---PTSKPPASGA-- 220
+R+HR++ELAW FST +GT LFLAEVVL+ WVKF+P+ P PTS+ P + A
Sbjct: 141 QRLHRYVELAWGFSTALGTFLFLAEVVLVGWVKFVPIGAPLDTPTPMVPTSRVPGTLAPV 200
Query: 221 ------AANVSTSGIT-----------------------PGQAAAIASTTIMVPFGLIFI 251
A+N+ S + PG AA+AST IMVP GL+F+
Sbjct: 201 ATSLSPASNLPRSSASAAPSQAEPACPPRQACGGGGAHGPGWQAAMASTAIMVPVGLVFV 260
Query: 252 VFAVHFYRSLVSHKTDRQFQELNELAEFARLQDQL 286
FA+HFYRSLV+HKTDR QEL EL RLQ +L
Sbjct: 261 AFALHFYRSLVAHKTDRYKQELEEL---NRLQGEL 292
>gi|57977325 membrane-associated ring finger (C3HC4) 4 [Homo
sapiens]
Length = 410
Score = 40.4 bits (93), Expect = 0.002
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 1 MHPEPAPPPSRSSPELPPSGGSTTSGSRRSRRRSGDGEPPGAPPPP-PSAVTYPDWIGQS 59
MH +P PP ++ LP G +G R R G PP PPPP P + DW G +
Sbjct: 64 MHGDPQPPGLAANNTLPALGAGGWAGWRGPREVVGREPPPVPPPPPLPPSSVEDDWGGPA 123
Query: 60 YSEVMSL 66
SL
Sbjct: 124 TEPPASL 130
>gi|11386183 WAS protein family, member 2 [Homo sapiens]
Length = 498
Score = 40.0 bits (92), Expect = 0.003
Identities = 21/55 (38%), Positives = 24/55 (43%), Gaps = 10/55 (18%)
Query: 3 PEPAPPPSRSSPELPPSGGSTTSGSRRSRRRSGDGEPPGAPPPPPSAVTYPDWIG 57
P P PPP+ P LPP S +G G PP PPPPP P + G
Sbjct: 365 PPPPPPPAADYPTLPPPPLSQPTG----------GAPPPPPPPPPPGPPPPPFTG 409
Score = 32.7 bits (73), Expect = 0.40
Identities = 22/63 (34%), Positives = 25/63 (39%), Gaps = 9/63 (14%)
Query: 2 HPEPAPP--------PSRSSPELPPSGGSTTSGSRRSRRRSGDGEPPGAPPP-PPSAVTY 52
HP PAPP P + P PP G G G P PPP PPS +
Sbjct: 299 HPPPAPPLGSPPGPKPGFAPPPAPPPPPPPMIGIPPPPPPVGFGSPGTPPPPSPPSFPPH 358
Query: 53 PDW 55
PD+
Sbjct: 359 PDF 361
Score = 32.3 bits (72), Expect = 0.53
Identities = 21/57 (36%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
Query: 3 PEPAPPPSRSSPELPPSGGSTTSGSRRSRRRSGDGEPP------GAPPPPPSAVTYP 53
P P PPP P PP G + G+ S PP PPPPP A YP
Sbjct: 322 PPPPPPPMIGIPPPPPPVGFGSPGT--PPPPSPPSFPPHPDFAAPPPPPPPPAADYP 376
Score = 29.3 bits (64), Expect = 4.4
Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 18/65 (27%)
Query: 7 PPPSRSSPELPPSGGSTTSGSRRSR------------------RRSGDGEPPGAPPPPPS 48
PPP+ S + GS +G +RS + G PP PPPPP
Sbjct: 269 PPPAEFSYPVDNQRGSGLAGPKRSSVVSPSHPPPAPPLGSPPGPKPGFAPPPAPPPPPPP 328
Query: 49 AVTYP 53
+ P
Sbjct: 329 MIGIP 333
Score = 29.3 bits (64), Expect = 4.4
Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 15/51 (29%)
Query: 3 PEPAPPPSRSSPELPPSGGSTTSGSRRSRRRSGDGEPPGAPPPPPSAVTYP 53
P P PPP P PP G+ DG+P A PPP S T P
Sbjct: 391 PPPPPPPPPPGPPPPPFTGA-------------DGQP--AIPPPLSDTTKP 426
>gi|226498192 atonal homolog 8 [Homo sapiens]
Length = 321
Score = 38.9 bits (89), Expect = 0.006
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 15/61 (24%)
Query: 3 PEPAPPPSRSSPELPPSGGSTTSGSRRSRRRS---------------GDGEPPGAPPPPP 47
P P P P +P +PP GG+ T+G R R G G P PPPPP
Sbjct: 71 PVPVPVPVPVAPAVPPRGGTDTAGERGGSRAPEVSDARKRCFALGAVGPGLPTPPPPPPP 130
Query: 48 S 48
+
Sbjct: 131 A 131
Score = 28.9 bits (63), Expect = 5.8
Identities = 31/110 (28%), Positives = 43/110 (39%), Gaps = 15/110 (13%)
Query: 3 PEPAPPPSRSSPELPPSGGSTTSGSR------RSRRRSGDGEPPGAPPPPPSAV--TYPD 54
P P P P +P P + G R R PP P PP S V P
Sbjct: 126 PPPPPAPQSQAPGGPEAQPFREPGLRPRILLCAPPARPAPSAPPAPPAPPESTVRPAPPT 185
Query: 55 WIGQ-SYSEVMSL--NEHSMQALSWRK----LYLSRAKLKASSRTSALLS 97
G+ SYS + + N H + S RK + +++KA +T LL+
Sbjct: 186 RPGESSYSSISHVIYNNHQDSSASPRKRPGEATAASSEIKALQQTRRLLA 235
>gi|11415052 retinoid X receptor, beta [Homo sapiens]
Length = 533
Score = 38.5 bits (88), Expect = 0.007
Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 10/52 (19%)
Query: 3 PEPAPPPSRSSPELPPSGGSTTSGSRRSRRRSGDGEPPGAP-PPPPSAVTYP 53
P+ PPPS P LPPS + GS G PP P PPPP +P
Sbjct: 92 PQGVPPPSPPGPPLPPSTAPSLGGS---------GAPPPPPMPPPPLGSPFP 134
>gi|40353727 synaptopodin isoform A [Homo sapiens]
Length = 903
Score = 38.5 bits (88), Expect = 0.007
Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 5 PAPPPSRSSPELPPSG--GSTTSGSRRSRRRSGDGEPPGAPPPPPSAVTYPDWIGQSYSE 62
P PP PPS G + G R S PP PPPPP + P W +S S
Sbjct: 683 PTSPPWTPGASRPPSSLDGWVSPGPWEPGRGSSMSSPPPLPPPPPMS---PSWSERSVSP 739
Query: 63 VMSLNE-----HSMQALSWRKLYLSRAKLKASSRTSA 94
+ E +QAL R + ++ A+ K++S SA
Sbjct: 740 LRPETEARPPSRQLQALLARNI-INAARRKSASPRSA 775
>gi|91199543 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo
sapiens]
Length = 1858
Score = 37.7 bits (86), Expect = 0.013
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 3 PEPAPPPSRSSPELPPSGGST-TSGSRRSRRRSGDGEPPGAPPPPPSAV 50
P P PPP + PP ST G + + + PP PPPPPS+V
Sbjct: 1678 PPPPPPPGPAPHHHPPPHPSTGLQGLQAQHQHVVNSAPPPPPPPPPSSV 1726
Score = 32.0 bits (71), Expect = 0.69
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 18 PSGGSTTSGSRRSRRRSGDGEPPGAPPPPPSAVTY 52
PSG S+ + S+ +++ PP PPPPPS+ Y
Sbjct: 1523 PSGQSSATYSQFNQQSLNSTAPPPPPPPPPSSSYY 1557
Score = 29.6 bits (65), Expect = 3.4
Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 15/66 (22%)
Query: 3 PEPAPPPSRSSPELPPSGGS---------------TTSGSRRSRRRSGDGEPPGAPPPPP 47
P P PPP P L S T GS + +G PP PPP P
Sbjct: 1627 PPPPPPPPAPGPHLVQQPNSHQQHSVAHVVGPVHAVTPGSHIHSQTAGHHLPPPPPPPGP 1686
Query: 48 SAVTYP 53
+ +P
Sbjct: 1687 APHHHP 1692
>gi|33636768 myeloid/lymphoid or mixed-lineage leukemia 5 [Homo
sapiens]
Length = 1858
Score = 37.7 bits (86), Expect = 0.013
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 3 PEPAPPPSRSSPELPPSGGST-TSGSRRSRRRSGDGEPPGAPPPPPSAV 50
P P PPP + PP ST G + + + PP PPPPPS+V
Sbjct: 1678 PPPPPPPGPAPHHHPPPHPSTGLQGLQAQHQHVVNSAPPPPPPPPPSSV 1726
Score = 32.0 bits (71), Expect = 0.69
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 18 PSGGSTTSGSRRSRRRSGDGEPPGAPPPPPSAVTY 52
PSG S+ + S+ +++ PP PPPPPS+ Y
Sbjct: 1523 PSGQSSATYSQFNQQSLNSTAPPPPPPPPPSSSYY 1557
Score = 29.6 bits (65), Expect = 3.4
Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 15/66 (22%)
Query: 3 PEPAPPPSRSSPELPPSGGS---------------TTSGSRRSRRRSGDGEPPGAPPPPP 47
P P PPP P L S T GS + +G PP PPP P
Sbjct: 1627 PPPPPPPPAPGPHLVQQPNSHQQHSVAHVVGPVHAVTPGSHIHSQTAGHHLPPPPPPPGP 1686
Query: 48 SAVTYP 53
+ +P
Sbjct: 1687 APHHHP 1692
>gi|4504465 homeobox B2 [Homo sapiens]
Length = 356
Score = 37.7 bits (86), Expect = 0.013
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 5 PAPPPSRSSPELPPSGGSTTSGSRRSRRRSGDGE--PPGAPPPPPSAVTYPDW 55
P PP ++ P L P G++T RS++R+ DG PP PPP P+A P++
Sbjct: 45 PPPPFEQTFPSLQP--GASTLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPEF 95
>gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 37.4 bits (85), Expect = 0.016
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 5 PAPPPSRSSPELPPSGGSTTSGSRRSRRRSGDGEPPGAPPPPPSAVTYPDWIGQSYSEV 63
P P P+ +P P S+ + S + S +G PP P PPP A ++P I S+ V
Sbjct: 388 PPPTPNAEAPPPGPGQASSVAPSSTNVESSAEGAPPPGPAPPP-ATSHPRVIRISHQSV 445
Score = 28.1 bits (61), Expect = 9.9
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 3 PEPAPPPSRSSPELPPSGGSTTSGSRRSRRRSGDGEPPGAPPPPPSAVTYPDWIG 57
P APPP+ ++ S G+T + + G +PP P P + + + +G
Sbjct: 554 PGMAPPPAPATASA--SAGTTNTATTAGPAPGGPAQPPPTPQPSMADLQFSQLLG 606
>gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 37.4 bits (85), Expect = 0.016
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 5 PAPPPSRSSPELPPSGGSTTSGSRRSRRRSGDGEPPGAPPPPPSAVTYPDWIGQSYSEV 63
P P P+ +P P S+ + S + S +G PP P PPP A ++P I S+ V
Sbjct: 388 PPPTPNAEAPPPGPGQASSVAPSSTNVESSAEGAPPPGPAPPP-ATSHPRVIRISHQSV 445
Score = 28.1 bits (61), Expect = 9.9
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 3 PEPAPPPSRSSPELPPSGGSTTSGSRRSRRRSGDGEPPGAPPPPPSAVTYPDWIG 57
P APPP+ ++ S G+T + + G +PP P P + + + +G
Sbjct: 554 PGMAPPPAPATASA--SAGTTNTATTAGPAPGGPAQPPPTPQPSMADLQFSQLLG 606
>gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 37.4 bits (85), Expect = 0.016
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 5 PAPPPSRSSPELPPSGGSTTSGSRRSRRRSGDGEPPGAPPPPPSAVTYPDWIGQSYSEV 63
P P P+ +P P S+ + S + S +G PP P PPP A ++P I S+ V
Sbjct: 388 PPPTPNAEAPPPGPGQASSVAPSSTNVESSAEGAPPPGPAPPP-ATSHPRVIRISHQSV 445
Score = 28.1 bits (61), Expect = 9.9
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 3 PEPAPPPSRSSPELPPSGGSTTSGSRRSRRRSGDGEPPGAPPPPPSAVTYPDWIG 57
P APPP+ ++ S G+T + + G +PP P P + + + +G
Sbjct: 554 PGMAPPPAPATASA--SAGTTNTATTAGPAPGGPAQPPPTPQPSMADLQFSQLLG 606
>gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens]
Length = 1132
Score = 37.4 bits (85), Expect = 0.016
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 5 PAPPPSRSSPELPPSGGSTTSGSRRSRRRSGDGEPPGAPPPPPSAVTYPDWIGQSYSEV 63
P P P+ +P P S+ + S + S +G PP P PPP A ++P I S+ V
Sbjct: 394 PPPTPNAEAPPPGPGQASSVAPSSTNVESSAEGAPPPGPAPPP-ATSHPRVIRISHQSV 451
Score = 28.1 bits (61), Expect = 9.9
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 3 PEPAPPPSRSSPELPPSGGSTTSGSRRSRRRSGDGEPPGAPPPPPSAVTYPDWIG 57
P APPP+ ++ S G+T + + G +PP P P + + + +G
Sbjct: 560 PGMAPPPAPATASA--SAGTTNTATTAGPAPGGPAQPPPTPQPSMADLQFSQLLG 612
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 37.0 bits (84), Expect = 0.021
Identities = 17/43 (39%), Positives = 20/43 (46%)
Query: 5 PAPPPSRSSPELPPSGGSTTSGSRRSRRRSGDGEPPGAPPPPP 47
PA PP P PP+ R RR+ + GAPPPPP
Sbjct: 717 PAAPPGPPGPAAPPAPSPAAPVRTRRRRKLYELHAAGAPPPPP 759
Score = 28.5 bits (62), Expect = 7.6
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 9/58 (15%)
Query: 3 PEPAPPPSRSSPELPPSGGSTTSGSRRSRRRSGDGEPPG------APPPPPSAVTYPD 54
P PAP P+ +SP+ P G + G PP A PPPP+ +Y D
Sbjct: 900 PSPAPAPA-ASPQ--PGSRGPRDGLGPEPQEPPPGPPPSPAAAPEAVPPPPAPPSYSD 954
Score = 28.1 bits (61), Expect = 9.9
Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 4 EPAPPPSRSSPELPPSGGSTTSGSRRSRRRSGDGEPPGAPPP--PPSAVTYPD 54
E P R P S GSR R G G P PPP PPS P+
Sbjct: 891 EARTPADRGPSPAPAPAASPQPGSRGPR--DGLGPEPQEPPPGPPPSPAAAPE 941
>gi|51702526 Wiskott-Aldrich syndrome gene-like protein [Homo
sapiens]
Length = 505
Score = 36.6 bits (83), Expect = 0.028
Identities = 19/45 (42%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 3 PEPAPPPSRSSPELPPSGGSTTSGSRRSRRRSGDGEPPGAPPPPP 47
P P PPP S P PP+ G SR P APPPPP
Sbjct: 288 PPPPPPPHNSGPPPPPARGRGAPPPPPSR------APTAAPPPPP 326
Score = 36.2 bits (82), Expect = 0.036
Identities = 21/48 (43%), Positives = 21/48 (43%), Gaps = 14/48 (29%)
Query: 5 PAPPPSRSSPELPPSGGSTTSGSRRSRRRSGDGEPP----GAPPPPPS 48
P PPPSR P PP SG PP GAPPPPPS
Sbjct: 278 PPPPPSRGGPPPPPP----------PPHNSGPPPPPARGRGAPPPPPS 315
Score = 32.7 bits (73), Expect = 0.40
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 14/46 (30%)
Query: 5 PAPPPSRSSPELPPSGGSTTSGSRRSRRRSGDGEPPGAPPPPPSAV 50
P PPP+R P PP+ S+ P G PPPPPS +
Sbjct: 335 PPPPPNRMYPPPPPALPSSA--------------PSGPPPPPPSVL 366
Score = 31.2 bits (69), Expect = 1.2
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 3 PEPAPPPSRSSPELPPSGGSTTSGSRRSRRRSGDGEPPGAP----PPPPSAV 50
P P P R +P PPS T + R PP P PPPP A+
Sbjct: 299 PPPPPARGRGAPPPPPSRAPTAAPPPPPPSRPSVAVPPPPPNRMYPPPPPAL 350
Score = 30.8 bits (68), Expect = 1.5
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Query: 1 MHPEPAPPPSRSSPELPPSGGSTTSGSRRSRRRSGDGEPPGAPPPPP 47
M+P P P S+P PP + G G PP PPPPP
Sbjct: 342 MYPPPPPALPSSAPSGPPPPPPSVLG-------VGPVAPPPPPPPPP 381
>gi|169210192 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 36.6 bits (83), Expect = 0.028
Identities = 24/59 (40%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 3 PEPAPPPSRSSPELPPSGG----STTSGSRRSRRRSGDGEPPGAPPP----PPSAVTYP 53
P PP + P LPP ST GSR RRR+G+G PG P P AV P
Sbjct: 87 PNTHPPAPGTQPALPPLARPCRVSTLCGSRLGRRRAGEGPRPGRALPFLSLPCQAVPAP 145
>gi|113425957 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 36.6 bits (83), Expect = 0.028
Identities = 24/59 (40%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
Query: 3 PEPAPPPSRSSPELPPSGG----STTSGSRRSRRRSGDGEPPGAPPP----PPSAVTYP 53
P PP + P LPP ST GSR RRR+G+G PG P P AV P
Sbjct: 87 PNTHPPAPGTQPALPPLARPCRVSTLCGSRLGRRRAGEGPRPGRALPFLSLPCQAVPAP 145
>gi|21536320 heterogeneous nuclear ribonucleoprotein U-like 1
isoform d [Homo sapiens]
Length = 756
Score = 36.2 bits (82), Expect = 0.036
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 24/83 (28%)
Query: 3 PEPAPPPSRSSPELPPSGGSTTSGSRRSRRRSGDGEPPGAPPPPPSAVTYPDWIGQSYSE 62
P P PPP PP+ + G G P PPPPP+A TYP
Sbjct: 674 PPPPPPP-------PPAYNYGSYG--------GYNPAPYTPPPPPTAQTYPQ-------- 710
Query: 63 VMSLNEHSMQALSWRKLYLSRAK 85
S N++ A W + Y ++ +
Sbjct: 711 -PSYNQYQQYAQQWNQYYQNQGQ 732
>gi|21536326 heterogeneous nuclear ribonucleoprotein U-like 1
isoform a [Homo sapiens]
Length = 856
Score = 36.2 bits (82), Expect = 0.036
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 24/83 (28%)
Query: 3 PEPAPPPSRSSPELPPSGGSTTSGSRRSRRRSGDGEPPGAPPPPPSAVTYPDWIGQSYSE 62
P P PPP PP+ + G G P PPPPP+A TYP
Sbjct: 774 PPPPPPP-------PPAYNYGSYG--------GYNPAPYTPPPPPTAQTYPQ-------- 810
Query: 63 VMSLNEHSMQALSWRKLYLSRAK 85
S N++ A W + Y ++ +
Sbjct: 811 -PSYNQYQQYAQQWNQYYQNQGQ 832
>gi|32307177 forkhead box G1 [Homo sapiens]
Length = 489
Score = 36.2 bits (82), Expect = 0.036
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 3 PEPAPPPSRSSPELPPSGGSTTSGSRRSRRRSGDGEP-----PGAPPPPPSA 49
P+P PPP + P PP +R + D P P PPPPP+A
Sbjct: 63 PQPPPPPQQQQPPPPPPPAPQPPQTRGAPAADDDKGPQQLLLPPPPPPPPAA 114
>gi|153281158 dual specificity phosphatase 8 [Homo sapiens]
Length = 625
Score = 36.2 bits (82), Expect = 0.036
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 3 PEPAPPPSRSSP--ELPP---SGGSTTSGSRRSRRRSGDGEPPGAPPPPPSA 49
PEP P P+ +P LPP +T + + R S GEPP P PP ++
Sbjct: 317 PEPPPSPAAGAPLPRLPPPTSESAATGNAAAREGGLSAGGEPPAPPTPPATS 368
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 36.2 bits (82), Expect = 0.036
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 21/59 (35%)
Query: 3 PEPAPPPSRSS------PELPPSGGSTTSGSRRSRRRSGDGEPP--GAPPPPPSAVTYP 53
P P PPP+ +S P PPS G T+ PP G PPPPP+AV P
Sbjct: 149 PTPTPPPAVTSAPPGAPPPTPPSSGVPTT-------------PPQAGGPPPPPAAVPGP 194
Score = 32.7 bits (73), Expect = 0.40
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 10/61 (16%)
Query: 3 PEPAP-----PPSRSS--PELPPSGGSTTS---GSRRSRRRSGDGEPPGAPPPPPSAVTY 52
P PAP PP+ SS P PP+ G+ G + + PPGAPPP P +
Sbjct: 115 PGPAPGVGSAPPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGV 174
Query: 53 P 53
P
Sbjct: 175 P 175
>gi|161169015 neuron navigator 2 isoform 3 [Homo sapiens]
Length = 2365
Score = 36.2 bits (82), Expect = 0.036
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 3 PEPAPPPSRSSPELPPSGGSTTSGSRRSR--RRSGDGEPPGAPPPPPSA 49
P P S + E GGSTT+ +RRS+ +P +PPPPPS+
Sbjct: 195 PGPTARVSAAGSEAKTRGGSTTANNRRSQSFNNYDKSKPVTSPPPPPSS 243
>gi|161169013 neuron navigator 2 isoform 1 [Homo sapiens]
Length = 2432
Score = 36.2 bits (82), Expect = 0.036
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 3 PEPAPPPSRSSPELPPSGGSTTSGSRRSR--RRSGDGEPPGAPPPPPSA 49
P P S + E GGSTT+ +RRS+ +P +PPPPPS+
Sbjct: 259 PGPTARVSAAGSEAKTRGGSTTANNRRSQSFNNYDKSKPVTSPPPPPSS 307
>gi|38044282 neuron navigator 2 isoform 2 [Homo sapiens]
Length = 2429
Score = 36.2 bits (82), Expect = 0.036
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 3 PEPAPPPSRSSPELPPSGGSTTSGSRRSR--RRSGDGEPPGAPPPPPSA 49
P P S + E GGSTT+ +RRS+ +P +PPPPPS+
Sbjct: 259 PGPTARVSAAGSEAKTRGGSTTANNRRSQSFNNYDKSKPVTSPPPPPSS 307
>gi|192807286 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 36.2 bits (82), Expect = 0.036
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 3 PEPAPPPSRSSPELPPSGGSTTSGSRRSRRRSGDGEPPGAPPP---PPSAVTYPDWIGQS 59
P PA + SS S S++S S S S PP A PP PP + P +
Sbjct: 76 PNPATTTAASSSSSSSSSSSSSSSSASSSSSSSSSSPPPASPPASSPPRVLELPGVPAAA 135
Query: 60 YSEVMS 65
+S+V++
Sbjct: 136 FSDVLN 141
Score = 34.3 bits (77), Expect = 0.14
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
Query: 3 PEPAPPPS-----RSSPELPPSGGSTTSGSRRSRRRSGDGEPPG-----APPPPPSAVTY 52
PEP PPPS +P + GGS++ G +G + APP PP Y
Sbjct: 463 PEPGPPPSVITFAHPAPSVIVHGGSSSGGGGSGTASTGGSQAASVITYTAPPRPPKKREY 522
Query: 53 P 53
P
Sbjct: 523 P 523
Score = 28.1 bits (61), Expect = 9.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 5 PAPPPSRSSPELPPSGGSTTSGSRRSRR 32
P PPP P +PP G +G R+++
Sbjct: 982 PTPPPPTLPPPIPPKGEGERAGVERTQK 1009
>gi|192807284 zinc finger and BTB domain containing 4 [Homo sapiens]
Length = 1013
Score = 36.2 bits (82), Expect = 0.036
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 3 PEPAPPPSRSSPELPPSGGSTTSGSRRSRRRSGDGEPPGAPPP---PPSAVTYPDWIGQS 59
P PA + SS S S++S S S S PP A PP PP + P +
Sbjct: 76 PNPATTTAASSSSSSSSSSSSSSSSASSSSSSSSSSPPPASPPASSPPRVLELPGVPAAA 135
Query: 60 YSEVMS 65
+S+V++
Sbjct: 136 FSDVLN 141
Score = 34.3 bits (77), Expect = 0.14
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
Query: 3 PEPAPPPS-----RSSPELPPSGGSTTSGSRRSRRRSGDGEPPG-----APPPPPSAVTY 52
PEP PPPS +P + GGS++ G +G + APP PP Y
Sbjct: 463 PEPGPPPSVITFAHPAPSVIVHGGSSSGGGGSGTASTGGSQAASVITYTAPPRPPKKREY 522
Query: 53 P 53
P
Sbjct: 523 P 523
Score = 28.1 bits (61), Expect = 9.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 5 PAPPPSRSSPELPPSGGSTTSGSRRSRR 32
P PPP P +PP G +G R+++
Sbjct: 982 PTPPPPTLPPPIPPKGEGERAGVERTQK 1009
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.132 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,218,971
Number of Sequences: 37866
Number of extensions: 769117
Number of successful extensions: 13306
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 447
Number of HSP's that attempted gapping in prelim test: 9725
Number of HSP's gapped (non-prelim): 3481
length of query: 301
length of database: 18,247,518
effective HSP length: 102
effective length of query: 199
effective length of database: 14,385,186
effective search space: 2862652014
effective search space used: 2862652014
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.