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Search of human proteins with 38016919
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38016919 hypothetical protein LOC29035 [Homo sapiens]
(275 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38016919 hypothetical protein LOC29035 [Homo sapiens] 558 e-159
gi|169217271 PREDICTED: hypothetical protein [Homo sapiens] 360 e-99
gi|89061101 PREDICTED: hypothetical protein [Homo sapiens] 360 e-99
gi|41151642 PREDICTED: hypothetical protein [Homo sapiens] 360 e-99
gi|83367077 mucin 16 [Homo sapiens] 33 0.35
gi|239735592 TRAF2 and NCK interacting kinase isoform 8 [Homo sa... 33 0.35
gi|239735590 TRAF2 and NCK interacting kinase isoform 7 [Homo sa... 33 0.35
gi|7662316 HIV-1 Vpr binding protein [Homo sapiens] 32 0.46
gi|4505419 nucleolar protein 3 [Homo sapiens] 32 0.46
gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens] 32 0.79
gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapi... 32 0.79
gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo sapi... 32 0.79
gi|95147555 microtubule-associated protein 1A [Homo sapiens] 31 1.0
gi|161019170 mucin 5AC [Homo sapiens] 30 1.8
gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] 30 1.8
gi|50658082 centrosomal protein 70 kDa [Homo sapiens] 30 1.8
gi|39780588 TSR1, 20S rRNA accumulation [Homo sapiens] 30 2.3
gi|21361639 DIPB protein [Homo sapiens] 30 3.0
gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens] 30 3.0
gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens] 30 3.0
gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens] 30 3.0
gi|150170729 microtubule associated serine/threonine kinase 3 [H... 30 3.0
gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-li... 29 3.9
gi|239735588 TRAF2 and NCK interacting kinase isoform 6 [Homo sa... 29 3.9
gi|239735586 TRAF2 and NCK interacting kinase isoform 5 [Homo sa... 29 3.9
gi|215422338 pyruvate dehydrogenase kinase 3 isoform 1 [Homo sap... 29 3.9
gi|4885545 pyruvate dehydrogenase kinase 3 isoform 2 [Homo sapiens] 29 3.9
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 29 3.9
gi|167614488 TBC1 domain family, member 10B [Homo sapiens] 29 3.9
gi|9966805 DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [Homo sapiens] 29 3.9
>gi|38016919 hypothetical protein LOC29035 [Homo sapiens]
Length = 275
Score = 558 bits (1438), Expect = e-159
Identities = 275/275 (100%), Positives = 275/275 (100%)
Query: 1 MEERKEEGEAEIQEHGPEHWFSKWERQCLAEAEQDEQLPPELQEEAAAAAQPEHKQQKLW 60
MEERKEEGEAEIQEHGPEHWFSKWERQCLAEAEQDEQLPPELQEEAAAAAQPEHKQQKLW
Sbjct: 1 MEERKEEGEAEIQEHGPEHWFSKWERQCLAEAEQDEQLPPELQEEAAAAAQPEHKQQKLW 60
Query: 61 HLFQNSATAVAQLYKDRVCQQPGLSLWVPFQNAATAVTNLYKESVDTHQRSFDIGIQIGY 120
HLFQNSATAVAQLYKDRVCQQPGLSLWVPFQNAATAVTNLYKESVDTHQRSFDIGIQIGY
Sbjct: 61 HLFQNSATAVAQLYKDRVCQQPGLSLWVPFQNAATAVTNLYKESVDTHQRSFDIGIQIGY 120
Query: 121 QRRNKDVLAWVKKRRRTIRREDLISFLCGKVPPPRNSRAPPRLTVVSPNRATSTETSSSV 180
QRRNKDVLAWVKKRRRTIRREDLISFLCGKVPPPRNSRAPPRLTVVSPNRATSTETSSSV
Sbjct: 121 QRRNKDVLAWVKKRRRTIRREDLISFLCGKVPPPRNSRAPPRLTVVSPNRATSTETSSSV 180
Query: 181 ETDLQPFREAIALHGLSGAMASISVRSSTPGSPTHVSSGSNASRRRNGLHDVDLNTFISE 240
ETDLQPFREAIALHGLSGAMASISVRSSTPGSPTHVSSGSNASRRRNGLHDVDLNTFISE
Sbjct: 181 ETDLQPFREAIALHGLSGAMASISVRSSTPGSPTHVSSGSNASRRRNGLHDVDLNTFISE 240
Query: 241 EMALHLDNGGTRKRTSAQCGDVITDSPTHKRNRMI 275
EMALHLDNGGTRKRTSAQCGDVITDSPTHKRNRMI
Sbjct: 241 EMALHLDNGGTRKRTSAQCGDVITDSPTHKRNRMI 275
>gi|169217271 PREDICTED: hypothetical protein [Homo sapiens]
Length = 273
Score = 360 bits (923), Expect = e-99
Identities = 189/280 (67%), Positives = 219/280 (78%), Gaps = 12/280 (4%)
Query: 1 MEERKEEGEAEIQEHGPEHWFSKWERQCLAEAEQDEQLPPELQEEAAAA-AQPEHKQQKL 59
MEE+++EGEAE+ EH WFSKWERQCLAEAEQ+EQLPPELQEEAAA A + ++QKL
Sbjct: 1 MEEQQKEGEAEVAEH----WFSKWERQCLAEAEQEEQLPPELQEEAAAELAGLKSEKQKL 56
Query: 60 WHLFQNSATAVAQLYKDRVCQQPGLSLWVPFQNAATAVTNLYKESVDTHQRSFDIGIQIG 119
WHLFQ SATAVAQLYKD CQQ GLS+W PFQNAA AVT+LYKES D HQRSFD+G+Q+G
Sbjct: 57 WHLFQISATAVAQLYKDSGCQQQGLSMWDPFQNAAMAVTSLYKESGDAHQRSFDLGVQVG 116
Query: 120 YQRRNKDVLAWVKKRRRTIRREDLISFLCGKV----PPPRNSRAPPRLTVVSPNRATSTE 175
+QRR KDVL WVKK R TIRREDLISFLCGKV PPPR R PP+ ++A +TE
Sbjct: 117 HQRRIKDVLEWVKKGRSTIRREDLISFLCGKVPPAPPPPRTPRTPPKPPTGVTSQAVATE 176
Query: 176 TSSSVETDLQPFREAIALHGLSGAMASISVRSSTPGSPTHVSSGSNASRRRNGLHDVDLN 235
+SSSV+ DLQPF+EAIALHGLSGAMA IS+RS G S +++ RR+ + DLN
Sbjct: 177 SSSSVDVDLQPFQEAIALHGLSGAMAGISMRS---GDSPQDSGVASSGRRKTSFLEDDLN 233
Query: 236 TFISEEMALHLDNGGTRKRTSAQCGDVITDSPTHKRNRMI 275
F SEE+ALHLD+GG RKRTSAQC D ITDSP KRNRM+
Sbjct: 234 PFDSEELALHLDSGGIRKRTSAQCSDGITDSPIQKRNRMV 273
>gi|89061101 PREDICTED: hypothetical protein [Homo sapiens]
Length = 273
Score = 360 bits (923), Expect = e-99
Identities = 189/280 (67%), Positives = 219/280 (78%), Gaps = 12/280 (4%)
Query: 1 MEERKEEGEAEIQEHGPEHWFSKWERQCLAEAEQDEQLPPELQEEAAAA-AQPEHKQQKL 59
MEE+++EGEAE+ EH WFSKWERQCLAEAEQ+EQLPPELQEEAAA A + ++QKL
Sbjct: 1 MEEQQKEGEAEVAEH----WFSKWERQCLAEAEQEEQLPPELQEEAAAELAGLKSEKQKL 56
Query: 60 WHLFQNSATAVAQLYKDRVCQQPGLSLWVPFQNAATAVTNLYKESVDTHQRSFDIGIQIG 119
WHLFQ SATAVAQLYKD CQQ GLS+W PFQNAA AVT+LYKES D HQRSFD+G+Q+G
Sbjct: 57 WHLFQISATAVAQLYKDSGCQQQGLSMWDPFQNAAMAVTSLYKESGDAHQRSFDLGVQVG 116
Query: 120 YQRRNKDVLAWVKKRRRTIRREDLISFLCGKV----PPPRNSRAPPRLTVVSPNRATSTE 175
+QRR KDVL WVKK R TIRREDLISFLCGKV PPPR R PP+ ++A +TE
Sbjct: 117 HQRRIKDVLEWVKKGRSTIRREDLISFLCGKVPPAPPPPRTPRTPPKPPTGVTSQAVATE 176
Query: 176 TSSSVETDLQPFREAIALHGLSGAMASISVRSSTPGSPTHVSSGSNASRRRNGLHDVDLN 235
+SSSV+ DLQPF+EAIALHGLSGAMA IS+RS G S +++ RR+ + DLN
Sbjct: 177 SSSSVDVDLQPFQEAIALHGLSGAMAGISMRS---GDSPQDSGVASSGRRKTSFLEDDLN 233
Query: 236 TFISEEMALHLDNGGTRKRTSAQCGDVITDSPTHKRNRMI 275
F SEE+ALHLD+GG RKRTSAQC D ITDSP KRNRM+
Sbjct: 234 PFDSEELALHLDSGGIRKRTSAQCSDGITDSPIQKRNRMV 273
>gi|41151642 PREDICTED: hypothetical protein [Homo sapiens]
Length = 273
Score = 360 bits (923), Expect = e-99
Identities = 189/280 (67%), Positives = 219/280 (78%), Gaps = 12/280 (4%)
Query: 1 MEERKEEGEAEIQEHGPEHWFSKWERQCLAEAEQDEQLPPELQEEAAAA-AQPEHKQQKL 59
MEE+++EGEAE+ EH WFSKWERQCLAEAEQ+EQLPPELQEEAAA A + ++QKL
Sbjct: 1 MEEQQKEGEAEVAEH----WFSKWERQCLAEAEQEEQLPPELQEEAAAELAGLKSEKQKL 56
Query: 60 WHLFQNSATAVAQLYKDRVCQQPGLSLWVPFQNAATAVTNLYKESVDTHQRSFDIGIQIG 119
WHLFQ SATAVAQLYKD CQQ GLS+W PFQNAA AVT+LYKES D HQRSFD+G+Q+G
Sbjct: 57 WHLFQISATAVAQLYKDSGCQQQGLSMWDPFQNAAMAVTSLYKESGDAHQRSFDLGVQVG 116
Query: 120 YQRRNKDVLAWVKKRRRTIRREDLISFLCGKV----PPPRNSRAPPRLTVVSPNRATSTE 175
+QRR KDVL WVKK R TIRREDLISFLCGKV PPPR R PP+ ++A +TE
Sbjct: 117 HQRRIKDVLEWVKKGRSTIRREDLISFLCGKVPPAPPPPRTPRTPPKPPTGVTSQAVATE 176
Query: 176 TSSSVETDLQPFREAIALHGLSGAMASISVRSSTPGSPTHVSSGSNASRRRNGLHDVDLN 235
+SSSV+ DLQPF+EAIALHGLSGAMA IS+RS G S +++ RR+ + DLN
Sbjct: 177 SSSSVDVDLQPFQEAIALHGLSGAMAGISMRS---GDSPQDSGVASSGRRKTSFLEDDLN 233
Query: 236 TFISEEMALHLDNGGTRKRTSAQCGDVITDSPTHKRNRMI 275
F SEE+ALHLD+GG RKRTSAQC D ITDSP KRNRM+
Sbjct: 234 PFDSEELALHLDSGGIRKRTSAQCSDGITDSPIQKRNRMV 273
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 32.7 bits (73), Expect = 0.35
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 174 TETSSSVETDLQPFREAIALHGLSGAMASISVRSSTPGSPTHVS-SGSNASRRRNGLHDV 232
TE++ + TDL P E I+ + +++ +T G P +S SGS SR +G D
Sbjct: 10256 TESTHHLSTDLLPSAETISTGTVMPSLSEAMTSFATTGVPRAISGSGSPFSRTESGPGDA 10315
Query: 233 DLNT 236
L+T
Sbjct: 10316 TLST 10319
>gi|239735592 TRAF2 and NCK interacting kinase isoform 8 [Homo
sapiens]
Length = 1268
Score = 32.7 bits (73), Expect = 0.35
Identities = 53/249 (21%), Positives = 96/249 (38%), Gaps = 37/249 (14%)
Query: 2 EERKEEGEAEIQEHGPEHWFSKWERQCLAEAEQDEQLPPELQEEAAAAAQPEHKQQK--- 58
E+ + E E EH E+ +R+ L E Q E+L +L++E +H++Q+
Sbjct: 429 EQMRREEERRRAEHEQEY-----KRKQLEEQRQAERLQRQLKQERDYLVSLQHQRQEQRP 483
Query: 59 -----LWHLFQNSATAVAQLYKDRVCQQPGLSLWVPFQNAATAVTNLYKESVDTHQRSFD 113
L+H + + + + + + P A+ +V + + Q + +
Sbjct: 484 VEKKPLYHYKEGMSPSEKPAWAKEIPHLVAVKSQGPALTASQSVHEQPTKGLSGFQEALN 543
Query: 114 I-GIQIGYQRRNKDVLAWVKKRRRTIRREDLISFLCGK--VPPPRNSRAPPRLTVVSPN- 169
+ ++ R+N D + I + D S+L + +PP + P R T +SP
Sbjct: 544 VTSHRVEMPRQNSDPTSENPPLPTRIEKFDRSSWLRQEEDIPP----KVPQRTTSISPAL 599
Query: 170 -RATSTETSSSVETDL---------------QPFREAIALHGLSGAMASISVRSSTPGSP 213
R S S++ L +P E+ SG+ +S S SS P S
Sbjct: 600 ARKNSPGNGSALGPRLGSQPIRASNPDLRRTEPILESPLQRTSSGSSSSSSTPSSQPSSQ 659
Query: 214 THVSSGSNA 222
GS A
Sbjct: 660 GGSQPGSQA 668
>gi|239735590 TRAF2 and NCK interacting kinase isoform 7 [Homo
sapiens]
Length = 1276
Score = 32.7 bits (73), Expect = 0.35
Identities = 53/249 (21%), Positives = 96/249 (38%), Gaps = 37/249 (14%)
Query: 2 EERKEEGEAEIQEHGPEHWFSKWERQCLAEAEQDEQLPPELQEEAAAAAQPEHKQQK--- 58
E+ + E E EH E+ +R+ L E Q E+L +L++E +H++Q+
Sbjct: 429 EQMRREEERRRAEHEQEY-----KRKQLEEQRQAERLQRQLKQERDYLVSLQHQRQEQRP 483
Query: 59 -----LWHLFQNSATAVAQLYKDRVCQQPGLSLWVPFQNAATAVTNLYKESVDTHQRSFD 113
L+H + + + + + + P A+ +V + + Q + +
Sbjct: 484 VEKKPLYHYKEGMSPSEKPAWAKEIPHLVAVKSQGPALTASQSVHEQPTKGLSGFQEALN 543
Query: 114 I-GIQIGYQRRNKDVLAWVKKRRRTIRREDLISFLCGK--VPPPRNSRAPPRLTVVSPN- 169
+ ++ R+N D + I + D S+L + +PP + P R T +SP
Sbjct: 544 VTSHRVEMPRQNSDPTSENPPLPTRIEKFDRSSWLRQEEDIPP----KVPQRTTSISPAL 599
Query: 170 -RATSTETSSSVETDL---------------QPFREAIALHGLSGAMASISVRSSTPGSP 213
R S S++ L +P E+ SG+ +S S SS P S
Sbjct: 600 ARKNSPGNGSALGPRLGSQPIRASNPDLRRTEPILESPLQRTSSGSSSSSSTPSSQPSSQ 659
Query: 214 THVSSGSNA 222
GS A
Sbjct: 660 GGSQPGSQA 668
>gi|7662316 HIV-1 Vpr binding protein [Homo sapiens]
Length = 1507
Score = 32.3 bits (72), Expect = 0.46
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 15/108 (13%)
Query: 68 TAVAQLYKDRVCQQPGLSLWVPFQNAATAVTNLYK--ESVDTHQRSFDIG---------- 115
TA +L D + PGL V FQ V NL+K D R++ G
Sbjct: 103 TAACRLLLDIM---PGLETAVVFQEKEGIVENLFKWAREADQPLRTYSTGLLGGAMENQD 159
Query: 116 IQIGYQRRNKDVLAWVKKRRRTIRREDLISFLCGKVPPPRNSRAPPRL 163
I Y+ N ++A V +R R ++ +++ K P PR + P L
Sbjct: 160 IAANYRDENSQLVAIVLRRLRELQLQEVALRQENKRPSPRKLSSEPLL 207
>gi|4505419 nucleolar protein 3 [Homo sapiens]
Length = 208
Score = 32.3 bits (72), Expect = 0.46
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 7 EGEAEIQEHGPEHWFSKWERQCLAEAEQDEQLPPELQEEAAAAAQPE 53
EG +Q PE + E + EAE + + PEL+ EA A +PE
Sbjct: 140 EGSEAVQSGTPEEPEPELEAEASKEAEPEPEPEPELEPEAEAEPEPE 186
>gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens]
Length = 1132
Score = 31.6 bits (70), Expect = 0.79
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 139 RREDLISFLCGKVPPPRNSRAPPRLTVVSPNR-ATSTETSSSVETDLQP 186
R E L C P P++S+ PP+ V+P A S++TS VE++ P
Sbjct: 182 RMETLPYLQCRGGPQPQHSQPPPQPPAVTPEPVALSSQTSEPVESEAPP 230
>gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo
sapiens]
Length = 678
Score = 31.6 bits (70), Expect = 0.79
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 4 RKEEGEAEIQEHGPEHW--FSKWERQCLAEAEQDEQLPP 40
R EG + + + P+H FSKW+ Q L +A ++ + PP
Sbjct: 588 RLPEGSSGLSSYTPKHSVAFSKWQEQALEQAPREAEPPP 626
>gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo
sapiens]
Length = 650
Score = 31.6 bits (70), Expect = 0.79
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 4 RKEEGEAEIQEHGPEHW--FSKWERQCLAEAEQDEQLPP 40
R EG + + + P+H FSKW+ Q L +A ++ + PP
Sbjct: 588 RLPEGSSGLSSYTPKHSVAFSKWQEQALEQAPREAEPPP 626
>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
Length = 2803
Score = 31.2 bits (69), Expect = 1.0
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 149 GKVPPPRNSRAPPRLTVVSPNRATSTETSSSVETDLQPFREAIALHGLSGAMASISVRSS 208
GK P R SRAPPR P TS T + + P + + ++GL ++S + S
Sbjct: 2633 GKGPADRASRAPPR-----PRSTTSQVTPAEEKDGHSPMSKGL-VNGLKAGPMALSSKGS 2686
Query: 209 TPGSPTHV 216
+ G+P +V
Sbjct: 2687 S-GAPVYV 2693
>gi|161019170 mucin 5AC [Homo sapiens]
Length = 6207
Score = 30.4 bits (67), Expect = 1.8
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 148 CGKVPPPRNSRAPPRLTVVSPNRATSTETSSSVETDL---QPFREAIALHGLSGAMAS-I 203
CG P P S P P T T+T+++ +T L R AL +G+ + +
Sbjct: 2125 CGPSPAPGTSPQPSLSASTEPAVPTPTQTTATEKTTLWVTPSIRSTAALTSQTGSSSGPV 2184
Query: 204 SVRSSTPGSPT 214
+V S PG+ T
Sbjct: 2185 TVTPSAPGTTT 2195
Score = 28.1 bits (61), Expect = 8.7
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 167 SPNRATSTETSSSVETDLQPFREAIALHGLSGAMASISVRSSTPGS------PTHVSSGS 220
+P ST T SS + A +GA S++ SSTPG+ PT ++G
Sbjct: 5015 TPTATMSTATPSSTPETVHTSTVLTATATTTGATGSVATPSSTPGTAHTTKVPTTTTTGF 5074
Query: 221 NAS 223
A+
Sbjct: 5075 TAT 5077
>gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]
Length = 5765
Score = 30.4 bits (67), Expect = 1.8
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 148 CGKVPPPRNSRAPPRLTVVSPNRATSTETSSSVETDL---QPFREAIALHGLSGAMAS-I 203
CG P P S P P T T+T+++ +T L R AL +G+ + +
Sbjct: 1435 CGPSPAPGTSPQPSLSASTEPAVPTPTQTTATEKTTLWVTPSIRSTAALTSQTGSSSGPV 1494
Query: 204 SVRSSTPGSPT 214
+V S PG+ T
Sbjct: 1495 TVTPSAPGTTT 1505
Score = 28.1 bits (61), Expect = 8.7
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
Query: 167 SPNRATSTETSSSVETDLQPFREAIALHGLSGAMASISVRSSTPGS------PTHVSSGS 220
+P ST T SS + A +GA S++ SSTPG+ PT ++G
Sbjct: 4545 TPTATMSTATPSSTPETVHTSTVLTATATTTGATGSVATPSSTPGTAHTTKVPTTTTTGF 4604
Query: 221 NAS 223
A+
Sbjct: 4605 TAT 4607
>gi|50658082 centrosomal protein 70 kDa [Homo sapiens]
Length = 597
Score = 30.4 bits (67), Expect = 1.8
Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 9/123 (7%)
Query: 33 EQDEQLPPELQEEAAAAAQPEHKQQKLWHLFQNSATAVAQLYKD---RVCQQPGLSLWVP 89
E ++QL ELQ E + AA E + L + ++ + + +L + R C Q +
Sbjct: 89 ETNQQLRNELQLEQSRAANQEQRANDLEQIMESVKSKIGELEDESLSRACHQQNKIKDLQ 148
Query: 90 FQNAATAVTNLYKESVDTHQRSFDIGIQIGYQRRNKDVLAWVKKRRRTIRREDLISFLCG 149
+ V + + T Q +Q+ R K+ + R + + + ++LC
Sbjct: 149 KEQKTLQVKCQHYKKKRTEQEETIASLQMEVCRLKKE------EEDRIVTQNRVFAYLCK 202
Query: 150 KVP 152
+VP
Sbjct: 203 RVP 205
>gi|39780588 TSR1, 20S rRNA accumulation [Homo sapiens]
Length = 804
Score = 30.0 bits (66), Expect = 2.3
Identities = 28/134 (20%), Positives = 53/134 (39%), Gaps = 27/134 (20%)
Query: 1 MEERKEEGEAEIQEHGPEHWFSKWERQCLAEAEQDEQLPPELQEEAAAAAQPEHKQQKLW 60
MEE ++ +E +E ++E + E+ D+ ++ EEA A ++KQ++L
Sbjct: 430 MEEESQDESSEEEE--------EYETMTIGESVHDDLYDKKVDEEAEAKMLEKYKQERLE 481
Query: 61 HLFQN------SATAVAQLYKDRVCQQPGLSLWVP-------------FQNAATAVTNLY 101
+F + A + K R + S W P FQN +++
Sbjct: 482 EMFPDEVDTPRDVAARIRFQKYRGLKSFRTSPWDPKENLPQDYARIFQFQNFTNTRKSIF 541
Query: 102 KESVDTHQRSFDIG 115
KE + ++G
Sbjct: 542 KEVEEKEVEGAEVG 555
>gi|21361639 DIPB protein [Homo sapiens]
Length = 344
Score = 29.6 bits (65), Expect = 3.0
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 2 EERKEEGEAEIQEHGPEHWFSKWERQCLAEAEQDEQLPPELQEEAAAAAQ---PEH 54
EE ++E E+E +E E S+ E + AE+E D PE++ EA A+ P+H
Sbjct: 131 EEMEDEQESEAEEDNQEEGESEAEGETEAESEFD----PEIEMEAERVAKRKCPDH 182
Score = 29.3 bits (64), Expect = 3.9
Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 9/84 (10%)
Query: 3 ERKEEGEAEIQEHGPEHWFSKWERQCLAEAEQDEQLPPELQEEAAAAAQPEHKQQKLWHL 62
E +EE E E E E + E + +EAE+D Q E + E A+ E
Sbjct: 112 ETEEESEDESDEESEEDSEEEMEDEQESEAEEDNQEEGESEAEGETEAESE--------- 162
Query: 63 FQNSATAVAQLYKDRVCQQPGLSL 86
F A+ R C GL L
Sbjct: 163 FDPEIEMEAERVAKRKCPDHGLDL 186
>gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 29.6 bits (65), Expect = 3.0
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 148 CGKVPPPRNSRAPPRLTVVSPNR-ATSTETSSSVETDLQP 186
C P P++S+ PP+ V+P A S++TS VE++ P
Sbjct: 185 CRGGPQPQHSQPPPQPPAVTPEPVALSSQTSEPVESEAPP 224
>gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 29.6 bits (65), Expect = 3.0
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 148 CGKVPPPRNSRAPPRLTVVSPNR-ATSTETSSSVETDLQP 186
C P P++S+ PP+ V+P A S++TS VE++ P
Sbjct: 185 CRGGPQPQHSQPPPQPPAVTPEPVALSSQTSEPVESEAPP 224
>gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 29.6 bits (65), Expect = 3.0
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 148 CGKVPPPRNSRAPPRLTVVSPNR-ATSTETSSSVETDLQP 186
C P P++S+ PP+ V+P A S++TS VE++ P
Sbjct: 185 CRGGPQPQHSQPPPQPPAVTPEPVALSSQTSEPVESEAPP 224
>gi|150170729 microtubule associated serine/threonine kinase 3 [Homo
sapiens]
Length = 1309
Score = 29.6 bits (65), Expect = 3.0
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 197 SGAMASISVRSSTPGSPTHVSSGSNASRRRNGLHDVDLNTFISEEMA 243
SG S+S S PGSPTH S S + R+ DV +T S A
Sbjct: 1094 SGLHHSLSSSESLPGSPTHSLSPSPTTPCRSPAPDVPADTTASPPSA 1140
>gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-like
[Homo sapiens]
Length = 899
Score = 29.3 bits (64), Expect = 3.9
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 2 EERKEEGEAEIQEHGPEHWFSK---WERQCLAEAEQDEQLPPELQEEAAAAAQPEHKQQK 58
EE+ +E E ++QE E W + WE++ E ++Q PE Q+E + +Q+K
Sbjct: 733 EEKMQEQEEKMQEQEEEMWEQEEKMWEQE---EKMWEQQRLPE-QKEKLWEHEKMQEQEK 788
Query: 59 LW 60
+W
Sbjct: 789 IW 790
>gi|239735588 TRAF2 and NCK interacting kinase isoform 6 [Homo
sapiens]
Length = 1297
Score = 29.3 bits (64), Expect = 3.9
Identities = 47/228 (20%), Positives = 89/228 (39%), Gaps = 32/228 (14%)
Query: 23 KWERQCLAEAEQDEQLPPELQEEAAAAAQPEHKQQK--------LWHLFQNSATAVAQLY 74
+++R+ L E Q E+L +L++E +H++Q+ L+H + + + +
Sbjct: 474 EYKRKQLEEQRQAERLQRQLKQERDYLVSLQHQRQEQRPVEKKPLYHYKEGMSPSEKPAW 533
Query: 75 KDRVCQQPGLSLWVPFQNAATAVTNLYKESVDTHQRSFDI-GIQIGYQRRNKDVLAWVKK 133
+ + P A+ +V + + Q + ++ ++ R+N D +
Sbjct: 534 AKEIPHLVAVKSQGPALTASQSVHEQPTKGLSGFQEALNVTSHRVEMPRQNSDPTSENPP 593
Query: 134 RRRTIRREDLISFLCGK--VPPPRNSRAPPRLTVVSPN--RATSTETSSSVETDL----- 184
I + D S+L + +PP + P R T +SP R S S++ L
Sbjct: 594 LPTRIEKFDRSSWLRQEEDIPP----KVPQRTTSISPALARKNSPGNGSALGPRLGSQPI 649
Query: 185 ----------QPFREAIALHGLSGAMASISVRSSTPGSPTHVSSGSNA 222
+P E+ SG+ +S S SS P S GS A
Sbjct: 650 RASNPDLRRTEPILESPLQRTSSGSSSSSSTPSSQPSSQGGSQPGSQA 697
>gi|239735586 TRAF2 and NCK interacting kinase isoform 5 [Homo
sapiens]
Length = 1305
Score = 29.3 bits (64), Expect = 3.9
Identities = 47/228 (20%), Positives = 89/228 (39%), Gaps = 32/228 (14%)
Query: 23 KWERQCLAEAEQDEQLPPELQEEAAAAAQPEHKQQK--------LWHLFQNSATAVAQLY 74
+++R+ L E Q E+L +L++E +H++Q+ L+H + + + +
Sbjct: 474 EYKRKQLEEQRQAERLQRQLKQERDYLVSLQHQRQEQRPVEKKPLYHYKEGMSPSEKPAW 533
Query: 75 KDRVCQQPGLSLWVPFQNAATAVTNLYKESVDTHQRSFDI-GIQIGYQRRNKDVLAWVKK 133
+ + P A+ +V + + Q + ++ ++ R+N D +
Sbjct: 534 AKEIPHLVAVKSQGPALTASQSVHEQPTKGLSGFQEALNVTSHRVEMPRQNSDPTSENPP 593
Query: 134 RRRTIRREDLISFLCGK--VPPPRNSRAPPRLTVVSPN--RATSTETSSSVETDL----- 184
I + D S+L + +PP + P R T +SP R S S++ L
Sbjct: 594 LPTRIEKFDRSSWLRQEEDIPP----KVPQRTTSISPALARKNSPGNGSALGPRLGSQPI 649
Query: 185 ----------QPFREAIALHGLSGAMASISVRSSTPGSPTHVSSGSNA 222
+P E+ SG+ +S S SS P S GS A
Sbjct: 650 RASNPDLRRTEPILESPLQRTSSGSSSSSSTPSSQPSSQGGSQPGSQA 697
>gi|215422338 pyruvate dehydrogenase kinase 3 isoform 1 [Homo
sapiens]
Length = 415
Score = 29.3 bits (64), Expect = 3.9
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 10/55 (18%)
Query: 33 EQDEQLPPELQEEAAAAAQPE----------HKQQKLWHLFQNSATAVAQLYKDR 77
EQ + PEL+ E A P+ H L+ LF+NS A +LY+DR
Sbjct: 209 EQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHMLFELFKNSMRATVELYEDR 263
>gi|4885545 pyruvate dehydrogenase kinase 3 isoform 2 [Homo sapiens]
Length = 406
Score = 29.3 bits (64), Expect = 3.9
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 10/55 (18%)
Query: 33 EQDEQLPPELQEEAAAAAQPE----------HKQQKLWHLFQNSATAVAQLYKDR 77
EQ + PEL+ E A P+ H L+ LF+NS A +LY+DR
Sbjct: 209 EQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHMLFELFKNSMRATVELYEDR 263
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 29.3 bits (64), Expect = 3.9
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 10/117 (8%)
Query: 160 PPRLTVVSPNRATSTETSSSV---ETDLQPFREAIALHGLSGAMASISVRSSTPGSPTHV 216
P + SP TSSSV + +L P ++ HG + + V+ + P SP V
Sbjct: 260 PNNMASCSPTLHPGLSTSSSVFGMQNNLAPSLTTLS-HGTTTTSTAYGVKKNMPQSPAAV 318
Query: 217 SSG-SNASRRRNGLHDVDLNTFISEEMALHLDNGGTRKR-----TSAQCGDVITDSP 267
++G S ++ + DL + + L DN +K + G V T SP
Sbjct: 319 NTGVSTSAACTTSVQSDDLLHKDCKFLILEKDNTPAKKEMELLIMTKDSGKVFTASP 375
>gi|167614488 TBC1 domain family, member 10B [Homo sapiens]
Length = 808
Score = 29.3 bits (64), Expect = 3.9
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 152 PPPRNSRAPPRLTVVSPNRATSTETSSSV 180
PPPR SRA P + VV+P +T TS+ V
Sbjct: 23 PPPRGSRAGP-VVVVAPGPPVTTATSAPV 50
>gi|9966805 DEAD (Asp-Glu-Ala-Asp) box polypeptide 24 [Homo sapiens]
Length = 859
Score = 29.3 bits (64), Expect = 3.9
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 152 PPPRNSRAPPRLTVVSPNRATSTETSSSVETDLQPFREAIALHGLSGAMASISVRSSTPG 211
PPP N+ APP T T + + E+D P I L +A+ R+ T G
Sbjct: 265 PPPSNTEAPPGETRTEAGAETRSPGKAEAESDALPDDTVIESEALPSDIAA-EARAKTGG 323
Query: 212 S 212
+
Sbjct: 324 T 324
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.127 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,617,802
Number of Sequences: 37866
Number of extensions: 511099
Number of successful extensions: 2157
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 2079
Number of HSP's gapped (non-prelim): 93
length of query: 275
length of database: 18,247,518
effective HSP length: 101
effective length of query: 174
effective length of database: 14,423,052
effective search space: 2509611048
effective search space used: 2509611048
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.