Guide to the Human Genome
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Name: PDK3 Sequence: fasta or formatted (406aa) NCBI GI: 4885545
Description:

pyruvate dehydrogenase kinase 3 isoform 2

Referenced in:

TCA Cycle

Other entries for this name:
alt prot [415aa] pyruvate dehydrogenase kinase 3 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         22           2
 C cysteine            0.7          3           1
 D aspartate           5.4         22           2
 E glutamate           6.7         27           2
 F phenylalanine       5.7         23           1
 G glycine             4.4         18           3
 H histidine           1.7          7           1
 I isoleucine          3.9         16           1
 K lysine              6.7         27           1
 L leucine            11.1         45           2
 M methionine          2.7         11           1
 N asparagine          4.7         19           1
 P proline             7.1         29           1
 Q glutamine           3.4         14           1
 R arginine            6.2         25           1
 S serine              6.9         28           2
 T threonine           4.2         17           2
 V valine              6.7         27           2
 W tryptophan          1.0          4           1
 Y tyrosine            5.4         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   pyruvate dehydrogenase kinase 3 isoform 2 
PDK3                  1.000   pyruvate dehydrogenase kinase 3 isoform 1 
PDK1                  0.680   pyruvate dehydrogenase kinase 1 
PDK2                  0.669   pyruvate dehydrogenase kinase 2 
PDK4                  0.619   pyruvate dehydrogenase kinase 4 
BCKDK                 0.156   branched chain ketoacid dehydrogenase kinase isofor...
BCKDK                 0.112   branched chain ketoacid dehydrogenase kinase isofor...
MMP13                 0.009   matrix metalloproteinase 13 preproprotein 
ANXA2                 0.007   annexin A2 isoform 2 
ANXA2                 0.007   annexin A2 isoform 2 
ANXA2                 0.007   annexin A2 isoform 1 
ANXA2                 0.007   annexin A2 isoform 2 
MED12L                0.006   mediator of RNA polymerase II transcription, subunit...
TCF20                 0.006   transcription factor 20 isoform 2 
TCF20                 0.006   transcription factor 20 isoform 1 
KIAA0427              0.005   hypothetical protein LOC9811 isoform 1 
C16orf72              0.005   hypothetical protein LOC29035 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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