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Search of human proteins with 37588859
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|37588859 ring finger protein 41 isoform 2 [Homo sapiens]
(246 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|37588861 ring finger protein 41 isoform 1 [Homo sapiens] 501 e-142
gi|37588859 ring finger protein 41 isoform 2 [Homo sapiens] 501 e-142
gi|5032071 ring finger protein 41 isoform 1 [Homo sapiens] 501 e-142
gi|57529737 PDZ domain containing ring finger 3 [Homo sapiens] 45 4e-05
gi|87241872 ring finger protein 151 [Homo sapiens] 37 0.021
gi|119395754 keratin 5 [Homo sapiens] 33 0.17
gi|41281453 serine/threonine kinase 2 [Homo sapiens] 33 0.30
gi|187608545 centrosomal protein 55kDa [Homo sapiens] 32 0.39
gi|187608537 centrosomal protein 55kDa [Homo sapiens] 32 0.39
gi|109148552 keratin 3 [Homo sapiens] 32 0.39
gi|57242774 hypothetical protein LOC9703 [Homo sapiens] 32 0.51
gi|189217904 RPGRIP1-like isoform b [Homo sapiens] 32 0.51
gi|118442834 RPGRIP1-like isoform a [Homo sapiens] 32 0.51
gi|153791670 keratin 76 [Homo sapiens] 31 0.86
gi|5902072 serine (or cysteine) proteinase inhibitor, clade B (o... 31 0.86
gi|42794779 myosin 18A isoform b [Homo sapiens] 31 0.86
gi|28416946 myosin 18A isoform a [Homo sapiens] 31 0.86
gi|22027622 TNF receptor-associated factor 4 [Homo sapiens] 31 1.1
gi|62243484 sarcoma antigen NY-SAR-41 [Homo sapiens] 31 1.1
gi|54633317 thioredoxin domain containing 11 [Homo sapiens] 30 1.5
gi|31542658 fatty acyl CoA reductase 2 [Homo sapiens] 30 1.9
gi|153090207 Golgi-localized syntaphilin-related protein isoform... 30 1.9
gi|153090203 Golgi-localized syntaphilin-related protein isoform... 30 1.9
gi|153090201 Golgi-localized syntaphilin-related protein isoform... 30 1.9
gi|153090191 Golgi-localized syntaphilin-related protein isoform... 30 1.9
gi|153090182 Golgi-localized syntaphilin-related protein isoform... 30 1.9
gi|148540145 Golgi-localized syntaphilin-related protein isoform... 30 1.9
gi|153090209 Golgi-localized syntaphilin-related protein isoform... 30 1.9
gi|153090205 Golgi-localized syntaphilin-related protein isoform... 30 1.9
gi|153090199 Golgi-localized syntaphilin-related protein isoform... 30 1.9
>gi|37588861 ring finger protein 41 isoform 1 [Homo sapiens]
Length = 317
Score = 501 bits (1289), Expect = e-142
Identities = 246/246 (100%), Positives = 246/246 (100%)
Query: 1 MRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQGCGLEMPKDELPN 60
MRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQGCGLEMPKDELPN
Sbjct: 72 MRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQGCGLEMPKDELPN 131
Query: 61 HNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNLQNLE 120
HNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNLQNLE
Sbjct: 132 HNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNLQNLE 191
Query: 121 ETIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIENAH 180
ETIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIENAH
Sbjct: 192 ETIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIENAH 251
Query: 181 ERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDMVQEPGLVMIFA 240
ERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDMVQEPGLVMIFA
Sbjct: 252 ERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDMVQEPGLVMIFA 311
Query: 241 HGVEEI 246
HGVEEI
Sbjct: 312 HGVEEI 317
>gi|37588859 ring finger protein 41 isoform 2 [Homo sapiens]
Length = 246
Score = 501 bits (1289), Expect = e-142
Identities = 246/246 (100%), Positives = 246/246 (100%)
Query: 1 MRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQGCGLEMPKDELPN 60
MRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQGCGLEMPKDELPN
Sbjct: 1 MRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQGCGLEMPKDELPN 60
Query: 61 HNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNLQNLE 120
HNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNLQNLE
Sbjct: 61 HNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNLQNLE 120
Query: 121 ETIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIENAH 180
ETIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIENAH
Sbjct: 121 ETIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIENAH 180
Query: 181 ERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDMVQEPGLVMIFA 240
ERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDMVQEPGLVMIFA
Sbjct: 181 ERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDMVQEPGLVMIFA 240
Query: 241 HGVEEI 246
HGVEEI
Sbjct: 241 HGVEEI 246
>gi|5032071 ring finger protein 41 isoform 1 [Homo sapiens]
Length = 317
Score = 501 bits (1289), Expect = e-142
Identities = 246/246 (100%), Positives = 246/246 (100%)
Query: 1 MRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQGCGLEMPKDELPN 60
MRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQGCGLEMPKDELPN
Sbjct: 72 MRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQGCGLEMPKDELPN 131
Query: 61 HNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNLQNLE 120
HNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNLQNLE
Sbjct: 132 HNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNLQNLE 191
Query: 121 ETIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIENAH 180
ETIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIENAH
Sbjct: 192 ETIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSLVESGCPASIVNELIENAH 251
Query: 181 ERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDMVQEPGLVMIFA 240
ERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDMVQEPGLVMIFA
Sbjct: 252 ERSWPQGLATLETRQMNRRYYENYVAKRIPGKQAVVVMACENQHMGDDMVQEPGLVMIFA 311
Query: 241 HGVEEI 246
HGVEEI
Sbjct: 312 HGVEEI 317
>gi|57529737 PDZ domain containing ring finger 3 [Homo sapiens]
Length = 1066
Score = 45.4 bits (106), Expect = 4e-05
Identities = 38/131 (29%), Positives = 52/131 (39%), Gaps = 31/131 (23%)
Query: 1 MRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKR------------------- 41
++ ++ KL I C A GC VV+L L HL C+ P R
Sbjct: 71 LKRLILKLDIKCAYATRGCGRVVKLQQLPEHLERCDFAPARCRHAGCGQVLLRRDVEAHM 130
Query: 42 -------PV-TCEQGCGLEMPKDE--LPNHNCIKHLRSVVQQQQTRIAELEKTSAEHKHQ 91
PV C++GCGL + E H C + LR+ Q R+ L K A K
Sbjct: 131 RDACDARPVGRCQEGCGLPLTHGEQRAGGHCCARALRAHNGALQARLGALHK--ALKKEA 188
Query: 92 LAEQKRDIQLL 102
L KR+ L+
Sbjct: 189 LRAGKREKSLV 199
>gi|87241872 ring finger protein 151 [Homo sapiens]
Length = 245
Score = 36.6 bits (83), Expect = 0.021
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Query: 11 ACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQGCGLEMPKDELPNHNCIKHLRSV 70
AC N GC++ V L H C+ ++ C GCG + E HNC + L +
Sbjct: 112 ACPNE--GCTSQVPRGTLAEHRQHCQQGSQQ--RCPLGCGATLDPAERARHNCYRELHNA 167
Query: 71 VQQQQTR 77
+Q R
Sbjct: 168 WSVRQER 174
Score = 33.9 bits (76), Expect = 0.13
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 1 MRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTC-EQGCGLEMPKDELP 59
+R + +L++ C NA GC L + H C P C +GC ++P+ L
Sbjct: 72 LRKTIGRLEVKCKNADAGCIVTCPLAHRKGHQDSC---PFELTACPNEGCTSQVPRGTLA 128
Query: 60 NHNCIKHLRSVVQQQ 74
H +H + QQ+
Sbjct: 129 EHR--QHCQQGSQQR 141
>gi|119395754 keratin 5 [Homo sapiens]
Length = 590
Score = 33.5 bits (75), Expect = 0.17
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
Query: 75 QTRIAELEKTSAEH-------KHQLAEQKRDIQLLKAYMRAIRSVNPNLQN 118
QT+ EL++T+ H KH+++E R IQ L+A + ++ NLQN
Sbjct: 362 QTKYEELQQTAGRHGDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQN 412
>gi|41281453 serine/threonine kinase 2 [Homo sapiens]
Length = 1235
Score = 32.7 bits (73), Expect = 0.30
Identities = 26/115 (22%), Positives = 56/115 (48%), Gaps = 6/115 (5%)
Query: 51 LEMPKDELPN--HNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRA 108
++ K EL N C+ + + +++ ++ I ELE+ + KHQL +Q+ Q +M+
Sbjct: 979 IQQQKAELANIERECLNNKQQLMRAREAAIWELEERHLQEKHQLLKQQLKDQY---FMQR 1035
Query: 109 IRSVNPNLQNLEETIEYNE-ILEWVNSLQPARVTRWGGMISTPDAVLQAVIKRSL 162
+ + + + E+ YN+ ++E + + Q R + + A+ K+SL
Sbjct: 1036 HQLLKRHEKETEQMQRYNQRLIEELKNRQTQERARLPKIQRSEAKTRMAMFKKSL 1090
>gi|187608545 centrosomal protein 55kDa [Homo sapiens]
Length = 464
Score = 32.3 bits (72), Expect = 0.39
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 77 RIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNLQNLEETIEYNEILEWV 132
+I LE ++ +QL E+ ++IQ L+ ++A S L+ LEET E E V
Sbjct: 62 KIRVLEAEKEKNAYQLTEKDKEIQRLRDQLKARYSTTALLEQLEETTREGERREQV 117
>gi|187608537 centrosomal protein 55kDa [Homo sapiens]
Length = 464
Score = 32.3 bits (72), Expect = 0.39
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 77 RIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNLQNLEETIEYNEILEWV 132
+I LE ++ +QL E+ ++IQ L+ ++A S L+ LEET E E V
Sbjct: 62 KIRVLEAEKEKNAYQLTEKDKEIQRLRDQLKARYSTTALLEQLEETTREGERREQV 117
>gi|109148552 keratin 3 [Homo sapiens]
Length = 628
Score = 32.3 bits (72), Expect = 0.39
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 75 QTRIAELEKTSAEH-------KHQLAEQKRDIQLLKAYMRAIRSVNPNLQN-LEETIEYN 126
QT++ EL+ T+ H K ++ E R IQ L+A + ++ N NLQ + E ++
Sbjct: 394 QTKLGELQTTAGRHGDDLRNTKSEIIELNRMIQRLRAEIEGVKKQNANLQTAIAEAEQHG 453
Query: 127 EI 128
E+
Sbjct: 454 EM 455
>gi|57242774 hypothetical protein LOC9703 [Homo sapiens]
Length = 2235
Score = 32.0 bits (71), Expect = 0.51
Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 6/121 (4%)
Query: 25 LDNLMSHLSDC--EHNPKRPVTCEQGCGLEMPKDELPNHNCIKHLRSVVQQQQTRIAELE 82
++NL+ H+ EH+ K+ Q LE+ + + I HL+ V+Q +I +LE
Sbjct: 1776 VNNLLLHVEPKRKEHSEKKQRVRFQ---LEISSNPEEQRSSILHLQEAVRQHVAQIRQLE 1832
Query: 83 KTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNLQNLE-ETIEYNEILEWVNSLQPARVT 141
K L + ++ LL + +N NL+ E+ E N ++ Q R
Sbjct: 1833 KQMYSIMKSLQDDSKNENLLDLNQKLQLQLNQEKANLQLESEELNILIRCFKDFQLQRAN 1892
Query: 142 R 142
+
Sbjct: 1893 K 1893
>gi|189217904 RPGRIP1-like isoform b [Homo sapiens]
Length = 1235
Score = 32.0 bits (71), Expect = 0.51
Identities = 20/76 (26%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 64 IKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNLQNLEETI 123
I++L +V+Q Q+ +I ELE + K QL ++ +I+L +R ++ + N+ + +
Sbjct: 208 IRNLENVIQSQRGQIEELEHLAEILKTQLRRKENEIELSLLQLREQQATDQR-SNIRDNV 266
Query: 124 E----YNEILEWVNSL 135
E + +++E N+L
Sbjct: 267 EMIKLHKQLVEKSNAL 282
>gi|118442834 RPGRIP1-like isoform a [Homo sapiens]
Length = 1315
Score = 32.0 bits (71), Expect = 0.51
Identities = 20/76 (26%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 64 IKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNLQNLEETI 123
I++L +V+Q Q+ +I ELE + K QL ++ +I+L +R ++ + N+ + +
Sbjct: 208 IRNLENVIQSQRGQIEELEHLAEILKTQLRRKENEIELSLLQLREQQATDQR-SNIRDNV 266
Query: 124 E----YNEILEWVNSL 135
E + +++E N+L
Sbjct: 267 EMIKLHKQLVEKSNAL 282
>gi|153791670 keratin 76 [Homo sapiens]
Length = 638
Score = 31.2 bits (69), Expect = 0.86
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
Query: 75 QTRIAELEKTSAEH-------KHQLAEQKRDIQLLKAYMRAIRSVNPNLQ 117
QT++ EL+ T+ H K ++ E R IQ L+A + ++ N NLQ
Sbjct: 377 QTKLGELQTTAGRHGDDLRNTKSEIMELNRMIQRLRAEIENVKKQNANLQ 426
>gi|5902072 serine (or cysteine) proteinase inhibitor, clade B
(ovalbumin), member 3 [Homo sapiens]
Length = 390
Score = 31.2 bits (69), Expect = 0.86
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 59 PNHNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNLQN 118
PN N K ++ + Q A LE A+ ++ + +D+ ++ I LQ
Sbjct: 202 PNKNTYKSIQMMRQYTSFHFASLEDVQAKVL-EIPYKGKDLSMIVLLPNEI----DGLQK 256
Query: 119 LEETIEYNEILEWVNSLQPARVTR 142
LEE + +++EW SLQ R TR
Sbjct: 257 LEEKLTAEKLMEW-TSLQNMRETR 279
>gi|42794779 myosin 18A isoform b [Homo sapiens]
Length = 2039
Score = 31.2 bits (69), Expect = 0.86
Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 15/125 (12%)
Query: 1 MRNMLSKLQIACDNAVFGCSAV-VRLDNLMSHLSDCEHNPKRPVTCEQGCGLEMPKDELP 59
++N L + + C AV A+ V +++L HL + + EQ L+ K+E+
Sbjct: 1688 LKNQLEESEFTCAAAVKARKAMEVEIEDL--HLQIDDIAKAKTALEEQLSRLQREKNEIQ 1745
Query: 60 NHNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNLQNL 119
N +++ Q + EL K +HK +A+ RD+ + + N Q L
Sbjct: 1746 NR---------LEEDQEDMNELMK---KHKAAVAQASRDLAQINDLQAQLEEANKEKQEL 1793
Query: 120 EETIE 124
+E ++
Sbjct: 1794 QEKLQ 1798
>gi|28416946 myosin 18A isoform a [Homo sapiens]
Length = 2054
Score = 31.2 bits (69), Expect = 0.86
Identities = 29/125 (23%), Positives = 55/125 (44%), Gaps = 15/125 (12%)
Query: 1 MRNMLSKLQIACDNAVFGCSAV-VRLDNLMSHLSDCEHNPKRPVTCEQGCGLEMPKDELP 59
++N L + + C AV A+ V +++L HL + + EQ L+ K+E+
Sbjct: 1688 LKNQLEESEFTCAAAVKARKAMEVEIEDL--HLQIDDIAKAKTALEEQLSRLQREKNEIQ 1745
Query: 60 NHNCIKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNLQNL 119
N +++ Q + EL K +HK +A+ RD+ + + N Q L
Sbjct: 1746 NR---------LEEDQEDMNELMK---KHKAAVAQASRDLAQINDLQAQLEEANKEKQEL 1793
Query: 120 EETIE 124
+E ++
Sbjct: 1794 QEKLQ 1798
>gi|22027622 TNF receptor-associated factor 4 [Homo sapiens]
Length = 470
Score = 30.8 bits (68), Expect = 1.1
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 8 LQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQGCGLEMPKDELPNH 61
L I C ++ GC L +L HL+ C N + C C +++ + +LP H
Sbjct: 79 LPIRCIHSEEGCRWSGPLRHLQGHLNTCSFN---VIPCPNRCPMKLSRRDLPAH 129
>gi|62243484 sarcoma antigen NY-SAR-41 [Homo sapiens]
Length = 1417
Score = 30.8 bits (68), Expect = 1.1
Identities = 35/200 (17%), Positives = 84/200 (42%), Gaps = 39/200 (19%)
Query: 1 MRNMLSKLQIACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQGCGLEMPKDELPN 60
+R++L K Q++ + + +L + L +C+ +E K EL
Sbjct: 1086 LRDVLQKAQLSLEEKY------TTIKDLTAELRECKME------------IEDKKQELLE 1127
Query: 61 HN-CIKHLRSVVQQQQTRIAELEKTSAEHKHQLAE---------QKRDIQLLKAYMRAIR 110
+ +K ++Q+ ++ L+ T EH+ ++ + +K +++L K + I
Sbjct: 1128 MDQALKERNWELKQRAAQVTHLDMTIREHRGEMEQKIIKLEGTLEKSELEL-KECNKQIE 1186
Query: 111 SVNPNLQNLEETIEYNEILEWVNSLQPARVTRWGGMISTPDAVLQAVIK----------R 160
S+N LQN +E + E + N + +++ + +++V+K +
Sbjct: 1187 SLNDKLQNAKEQLREKEFIMLQNEQEISQLKKEIERTQQRMKEMESVMKEQEQYIATQYK 1246
Query: 161 SLVESGCPASIVNELIENAH 180
++ G + E ++N+H
Sbjct: 1247 EAIDLGQELRLTREQVQNSH 1266
>gi|54633317 thioredoxin domain containing 11 [Homo sapiens]
Length = 958
Score = 30.4 bits (67), Expect = 1.5
Identities = 15/61 (24%), Positives = 30/61 (49%)
Query: 64 IKHLRSVVQQQQTRIAELEKTSAEHKHQLAEQKRDIQLLKAYMRAIRSVNPNLQNLEETI 123
I HL +Q+ + I+ L++ + + QL+ +RD L+ RA+ + L E +
Sbjct: 800 ISHLEREIQKLRAEISSLQRAQVQVESQLSSARRDEHRLRQQQRALEEQHSLLHAHSEQL 859
Query: 124 E 124
+
Sbjct: 860 Q 860
>gi|31542658 fatty acyl CoA reductase 2 [Homo sapiens]
Length = 515
Score = 30.0 bits (66), Expect = 1.9
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 10/69 (14%)
Query: 10 IACDNAVFGCSAVVRLDNLMSHLSDCEHNPKRPVTCEQGCGLEMPKDELPNH------NC 63
++C N +F C+A VR D+ + H R + +MPK E H NC
Sbjct: 102 LSCTNIIFHCAATVRFDDTLRHAVQLNVTATRQLLL---MASQMPKLEAFIHISTAYSNC 158
Query: 64 -IKHLRSVV 71
+KH+ V+
Sbjct: 159 NLKHIDEVI 167
>gi|153090207 Golgi-localized syntaphilin-related protein isoform c
[Homo sapiens]
Length = 660
Score = 30.0 bits (66), Expect = 1.9
Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 15/106 (14%)
Query: 33 SDCEHNPKRP---VTCEQGCGLEMPKDEL------PNHNCIKHLRSVVQQQQTRIAELEK 83
SDC +R ++C + G+ P E ++HL++ +++ + R+ E E
Sbjct: 235 SDCSPIMRRSGRYMSCGENHGVRPPNPEQYLTPLQQKEVTVRHLKTKLKESERRLHERES 294
Query: 84 TSAEHKHQLAEQKRD-----IQLLKAYMRAIRSVNPNLQNLEETIE 124
E K QLA + D ++A + A++ ++ L++ IE
Sbjct: 295 EIVELKSQLARMREDWIEEECHRVEAQL-ALKEARKEIKQLKQVIE 339
>gi|153090203 Golgi-localized syntaphilin-related protein isoform b
[Homo sapiens]
Length = 662
Score = 30.0 bits (66), Expect = 1.9
Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 15/106 (14%)
Query: 33 SDCEHNPKRP---VTCEQGCGLEMPKDEL------PNHNCIKHLRSVVQQQQTRIAELEK 83
SDC +R ++C + G+ P E ++HL++ +++ + R+ E E
Sbjct: 237 SDCSPIMRRSGRYMSCGENHGVRPPNPEQYLTPLQQKEVTVRHLKTKLKESERRLHERES 296
Query: 84 TSAEHKHQLAEQKRD-----IQLLKAYMRAIRSVNPNLQNLEETIE 124
E K QLA + D ++A + A++ ++ L++ IE
Sbjct: 297 EIVELKSQLARMREDWIEEECHRVEAQL-ALKEARKEIKQLKQVIE 341
>gi|153090201 Golgi-localized syntaphilin-related protein isoform b
[Homo sapiens]
Length = 662
Score = 30.0 bits (66), Expect = 1.9
Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 15/106 (14%)
Query: 33 SDCEHNPKRP---VTCEQGCGLEMPKDEL------PNHNCIKHLRSVVQQQQTRIAELEK 83
SDC +R ++C + G+ P E ++HL++ +++ + R+ E E
Sbjct: 237 SDCSPIMRRSGRYMSCGENHGVRPPNPEQYLTPLQQKEVTVRHLKTKLKESERRLHERES 296
Query: 84 TSAEHKHQLAEQKRD-----IQLLKAYMRAIRSVNPNLQNLEETIE 124
E K QLA + D ++A + A++ ++ L++ IE
Sbjct: 297 EIVELKSQLARMREDWIEEECHRVEAQL-ALKEARKEIKQLKQVIE 341
>gi|153090191 Golgi-localized syntaphilin-related protein isoform b
[Homo sapiens]
Length = 662
Score = 30.0 bits (66), Expect = 1.9
Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 15/106 (14%)
Query: 33 SDCEHNPKRP---VTCEQGCGLEMPKDEL------PNHNCIKHLRSVVQQQQTRIAELEK 83
SDC +R ++C + G+ P E ++HL++ +++ + R+ E E
Sbjct: 237 SDCSPIMRRSGRYMSCGENHGVRPPNPEQYLTPLQQKEVTVRHLKTKLKESERRLHERES 296
Query: 84 TSAEHKHQLAEQKRD-----IQLLKAYMRAIRSVNPNLQNLEETIE 124
E K QLA + D ++A + A++ ++ L++ IE
Sbjct: 297 EIVELKSQLARMREDWIEEECHRVEAQL-ALKEARKEIKQLKQVIE 341
>gi|153090182 Golgi-localized syntaphilin-related protein isoform b
[Homo sapiens]
Length = 662
Score = 30.0 bits (66), Expect = 1.9
Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 15/106 (14%)
Query: 33 SDCEHNPKRP---VTCEQGCGLEMPKDEL------PNHNCIKHLRSVVQQQQTRIAELEK 83
SDC +R ++C + G+ P E ++HL++ +++ + R+ E E
Sbjct: 237 SDCSPIMRRSGRYMSCGENHGVRPPNPEQYLTPLQQKEVTVRHLKTKLKESERRLHERES 296
Query: 84 TSAEHKHQLAEQKRD-----IQLLKAYMRAIRSVNPNLQNLEETIE 124
E K QLA + D ++A + A++ ++ L++ IE
Sbjct: 297 EIVELKSQLARMREDWIEEECHRVEAQL-ALKEARKEIKQLKQVIE 341
>gi|148540145 Golgi-localized syntaphilin-related protein isoform b
[Homo sapiens]
Length = 662
Score = 30.0 bits (66), Expect = 1.9
Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 15/106 (14%)
Query: 33 SDCEHNPKRP---VTCEQGCGLEMPKDEL------PNHNCIKHLRSVVQQQQTRIAELEK 83
SDC +R ++C + G+ P E ++HL++ +++ + R+ E E
Sbjct: 237 SDCSPIMRRSGRYMSCGENHGVRPPNPEQYLTPLQQKEVTVRHLKTKLKESERRLHERES 296
Query: 84 TSAEHKHQLAEQKRD-----IQLLKAYMRAIRSVNPNLQNLEETIE 124
E K QLA + D ++A + A++ ++ L++ IE
Sbjct: 297 EIVELKSQLARMREDWIEEECHRVEAQL-ALKEARKEIKQLKQVIE 341
>gi|153090209 Golgi-localized syntaphilin-related protein isoform d
[Homo sapiens]
Length = 544
Score = 30.0 bits (66), Expect = 1.9
Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 15/106 (14%)
Query: 33 SDCEHNPKRP---VTCEQGCGLEMPKDEL------PNHNCIKHLRSVVQQQQTRIAELEK 83
SDC +R ++C + G+ P E ++HL++ +++ + R+ E E
Sbjct: 119 SDCSPIMRRSGRYMSCGENHGVRPPNPEQYLTPLQQKEVTVRHLKTKLKESERRLHERES 178
Query: 84 TSAEHKHQLAEQKRD-----IQLLKAYMRAIRSVNPNLQNLEETIE 124
E K QLA + D ++A + A++ ++ L++ IE
Sbjct: 179 EIVELKSQLARMREDWIEEECHRVEAQL-ALKEARKEIKQLKQVIE 223
>gi|153090205 Golgi-localized syntaphilin-related protein isoform a
[Homo sapiens]
Length = 663
Score = 30.0 bits (66), Expect = 1.9
Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 15/106 (14%)
Query: 33 SDCEHNPKRP---VTCEQGCGLEMPKDEL------PNHNCIKHLRSVVQQQQTRIAELEK 83
SDC +R ++C + G+ P E ++HL++ +++ + R+ E E
Sbjct: 238 SDCSPIMRRSGRYMSCGENHGVRPPNPEQYLTPLQQKEVTVRHLKTKLKESERRLHERES 297
Query: 84 TSAEHKHQLAEQKRD-----IQLLKAYMRAIRSVNPNLQNLEETIE 124
E K QLA + D ++A + A++ ++ L++ IE
Sbjct: 298 EIVELKSQLARMREDWIEEECHRVEAQL-ALKEARKEIKQLKQVIE 342
>gi|153090199 Golgi-localized syntaphilin-related protein isoform a
[Homo sapiens]
Length = 663
Score = 30.0 bits (66), Expect = 1.9
Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 15/106 (14%)
Query: 33 SDCEHNPKRP---VTCEQGCGLEMPKDEL------PNHNCIKHLRSVVQQQQTRIAELEK 83
SDC +R ++C + G+ P E ++HL++ +++ + R+ E E
Sbjct: 238 SDCSPIMRRSGRYMSCGENHGVRPPNPEQYLTPLQQKEVTVRHLKTKLKESERRLHERES 297
Query: 84 TSAEHKHQLAEQKRD-----IQLLKAYMRAIRSVNPNLQNLEETIE 124
E K QLA + D ++A + A++ ++ L++ IE
Sbjct: 298 EIVELKSQLARMREDWIEEECHRVEAQL-ALKEARKEIKQLKQVIE 342
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.131 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,872,949
Number of Sequences: 37866
Number of extensions: 358119
Number of successful extensions: 1502
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 1437
Number of HSP's gapped (non-prelim): 123
length of query: 246
length of database: 18,247,518
effective HSP length: 100
effective length of query: 146
effective length of database: 14,460,918
effective search space: 2111294028
effective search space used: 2111294028
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.