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Search of human proteins with 35493801
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|35493801 ring finger protein 19 [Homo sapiens]
(838 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|35493801 ring finger protein 19 [Homo sapiens] 1695 0.0
gi|35493782 ring finger protein 19 [Homo sapiens] 1695 0.0
gi|188219577 ring finger protein 19B isoform a [Homo sapiens] 759 0.0
gi|188219579 ring finger protein 19B isoform b [Homo sapiens] 722 0.0
gi|38045938 ring finger protein 144 [Homo sapiens] 108 3e-23
gi|187761373 ariadne ubiquitin-conjugating enzyme E2 binding pro... 101 3e-21
gi|50284696 IBR domain containing 2 [Homo sapiens] 99 1e-20
gi|148596953 ankyrin repeat and IBR domain containing 1 [Homo sa... 95 2e-19
gi|5453557 ariadne homolog 2 [Homo sapiens] 87 6e-17
gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo... 83 1e-15
gi|34577102 ring finger protein 14 isoform 1 [Homo sapiens] 76 1e-13
gi|34577100 ring finger protein 14 isoform 1 [Homo sapiens] 76 1e-13
gi|34577098 ring finger protein 14 isoform 1 [Homo sapiens] 76 1e-13
gi|34577096 ring finger protein 14 isoform 2 [Homo sapiens] 76 1e-13
gi|4757762 ring finger protein 14 isoform 1 [Homo sapiens] 76 1e-13
gi|46370057 ring finger protein 216 isoform b [Homo sapiens] 69 1e-11
gi|46358403 ring finger protein 216 isoform a [Homo sapiens] 69 1e-11
gi|109150431 ring finger protein 31 [Homo sapiens] 62 3e-09
gi|169790973 parkin isoform 3 [Homo sapiens] 60 8e-09
gi|169790971 parkin isoform 2 [Homo sapiens] 60 8e-09
gi|169790969 parkin isoform 1 [Homo sapiens] 60 8e-09
gi|5454168 RanBP-type and C3HC4-type zinc finger containing 1 is... 54 8e-07
gi|144953898 RanBP-type and C3HC4-type zinc finger containing 1 ... 54 8e-07
gi|22749145 ring finger protein 217 [Homo sapiens] 50 7e-06
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens] 47 1e-04
gi|8923040 CDKN2A interacting protein [Homo sapiens] 42 0.003
gi|117938316 tripartite motif-containing 22 [Homo sapiens] 41 0.005
gi|22749455 ring finger protein 182 [Homo sapiens] 40 0.007
gi|157426898 tripartite motif-containing 10 isoform 1 [Homo sapi... 40 0.009
gi|157426896 tripartite motif-containing 10 isoform 2 [Homo sapi... 40 0.009
>gi|35493801 ring finger protein 19 [Homo sapiens]
Length = 838
Score = 1695 bits (4390), Expect = 0.0
Identities = 838/838 (100%), Positives = 838/838 (100%)
Query: 1 MQEQEIGFISKYNEGLCVNTDPVSILTSILDMSLHRQMGSDRDLQSSASSVSLPSVKKAP 60
MQEQEIGFISKYNEGLCVNTDPVSILTSILDMSLHRQMGSDRDLQSSASSVSLPSVKKAP
Sbjct: 1 MQEQEIGFISKYNEGLCVNTDPVSILTSILDMSLHRQMGSDRDLQSSASSVSLPSVKKAP 60
Query: 61 KKRRISIGSLFRRKKDNKRKSRELNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT 120
KKRRISIGSLFRRKKDNKRKSRELNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT
Sbjct: 61 KKRRISIGSLFRRKKDNKRKSRELNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT 120
Query: 121 SISKQIGDFIECPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT 180
SISKQIGDFIECPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT
Sbjct: 121 SISKQIGDFIECPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT 180
Query: 181 ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCGYAVIAFGCASCPKLT 240
ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCGYAVIAFGCASCPKLT
Sbjct: 181 ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCGYAVIAFGCASCPKLT 240
Query: 241 CGREGCGTEFCYHCKQIWHPNQTCDAARQERAQSLRLRTIRSSSISYSQESGAAADDIKP 300
CGREGCGTEFCYHCKQIWHPNQTCDAARQERAQSLRLRTIRSSSISYSQESGAAADDIKP
Sbjct: 241 CGREGCGTEFCYHCKQIWHPNQTCDAARQERAQSLRLRTIRSSSISYSQESGAAADDIKP 300
Query: 301 CPRCAAYIIKMNDGSCNHMTCAVCGCEFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKK 360
CPRCAAYIIKMNDGSCNHMTCAVCGCEFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKK
Sbjct: 301 CPRCAAYIIKMNDGSCNHMTCAVCGCEFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKK 360
Query: 361 ILWQLGTLVGAPVGIALIAGIAIPAMIIGIPVYVGRKIHNRYEGKDVSKHKRNLAIAGGV 420
ILWQLGTLVGAPVGIALIAGIAIPAMIIGIPVYVGRKIHNRYEGKDVSKHKRNLAIAGGV
Sbjct: 361 ILWQLGTLVGAPVGIALIAGIAIPAMIIGIPVYVGRKIHNRYEGKDVSKHKRNLAIAGGV 420
Query: 421 TLSVIVSPVVAAVTVGIGVPIMLAYVYGVVPISLCRSGGCGVSAGNGKGVRIEFDDENDI 480
TLSVIVSPVVAAVTVGIGVPIMLAYVYGVVPISLCRSGGCGVSAGNGKGVRIEFDDENDI
Sbjct: 421 TLSVIVSPVVAAVTVGIGVPIMLAYVYGVVPISLCRSGGCGVSAGNGKGVRIEFDDENDI 480
Query: 481 NVGGTNTAVDTTSVAEARHNPSIGEGSVGGLTGSLSASGSHMDRIGAIRDNLSETASTMA 540
NVGGTNTAVDTTSVAEARHNPSIGEGSVGGLTGSLSASGSHMDRIGAIRDNLSETASTMA
Sbjct: 481 NVGGTNTAVDTTSVAEARHNPSIGEGSVGGLTGSLSASGSHMDRIGAIRDNLSETASTMA 540
Query: 541 LAGASITGSLSGSAMVNCFNRLEVQADVQKERYSLSGESGTVSLGTVSDNASTKAMAGSI 600
LAGASITGSLSGSAMVNCFNRLEVQADVQKERYSLSGESGTVSLGTVSDNASTKAMAGSI
Sbjct: 541 LAGASITGSLSGSAMVNCFNRLEVQADVQKERYSLSGESGTVSLGTVSDNASTKAMAGSI 600
Query: 601 LNSYIPLDKEGNSMEVQVDIESKPSKFRHNSGSSSVDDGSATRSHAGGSSSGLPEGKSSA 660
LNSYIPLDKEGNSMEVQVDIESKPSKFRHNSGSSSVDDGSATRSHAGGSSSGLPEGKSSA
Sbjct: 601 LNSYIPLDKEGNSMEVQVDIESKPSKFRHNSGSSSVDDGSATRSHAGGSSSGLPEGKSSA 660
Query: 661 TKWSKEATAGKKSKSGKLRKKGNMKINETREDMDAQLLEQQSTNSSEFEAPSLSDSMPSV 720
TKWSKEATAGKKSKSGKLRKKGNMKINETREDMDAQLLEQQSTNSSEFEAPSLSDSMPSV
Sbjct: 661 TKWSKEATAGKKSKSGKLRKKGNMKINETREDMDAQLLEQQSTNSSEFEAPSLSDSMPSV 720
Query: 721 ADSHSSHFSEFSCSDLESMKTSCSHGSSDYHTRFATVNILPEVENDRLENSPHQCSISVV 780
ADSHSSHFSEFSCSDLESMKTSCSHGSSDYHTRFATVNILPEVENDRLENSPHQCSISVV
Sbjct: 721 ADSHSSHFSEFSCSDLESMKTSCSHGSSDYHTRFATVNILPEVENDRLENSPHQCSISVV 780
Query: 781 TQTASCSEVSQLNHIAEEHGNNGIKPNVDLYFGDALKETNNNHSHQTMELKVAIQTEI 838
TQTASCSEVSQLNHIAEEHGNNGIKPNVDLYFGDALKETNNNHSHQTMELKVAIQTEI
Sbjct: 781 TQTASCSEVSQLNHIAEEHGNNGIKPNVDLYFGDALKETNNNHSHQTMELKVAIQTEI 838
>gi|35493782 ring finger protein 19 [Homo sapiens]
Length = 838
Score = 1695 bits (4390), Expect = 0.0
Identities = 838/838 (100%), Positives = 838/838 (100%)
Query: 1 MQEQEIGFISKYNEGLCVNTDPVSILTSILDMSLHRQMGSDRDLQSSASSVSLPSVKKAP 60
MQEQEIGFISKYNEGLCVNTDPVSILTSILDMSLHRQMGSDRDLQSSASSVSLPSVKKAP
Sbjct: 1 MQEQEIGFISKYNEGLCVNTDPVSILTSILDMSLHRQMGSDRDLQSSASSVSLPSVKKAP 60
Query: 61 KKRRISIGSLFRRKKDNKRKSRELNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT 120
KKRRISIGSLFRRKKDNKRKSRELNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT
Sbjct: 61 KKRRISIGSLFRRKKDNKRKSRELNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLT 120
Query: 121 SISKQIGDFIECPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT 180
SISKQIGDFIECPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT
Sbjct: 121 SISKQIGDFIECPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT 180
Query: 181 ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCGYAVIAFGCASCPKLT 240
ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCGYAVIAFGCASCPKLT
Sbjct: 181 ERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCGYAVIAFGCASCPKLT 240
Query: 241 CGREGCGTEFCYHCKQIWHPNQTCDAARQERAQSLRLRTIRSSSISYSQESGAAADDIKP 300
CGREGCGTEFCYHCKQIWHPNQTCDAARQERAQSLRLRTIRSSSISYSQESGAAADDIKP
Sbjct: 241 CGREGCGTEFCYHCKQIWHPNQTCDAARQERAQSLRLRTIRSSSISYSQESGAAADDIKP 300
Query: 301 CPRCAAYIIKMNDGSCNHMTCAVCGCEFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKK 360
CPRCAAYIIKMNDGSCNHMTCAVCGCEFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKK
Sbjct: 301 CPRCAAYIIKMNDGSCNHMTCAVCGCEFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKK 360
Query: 361 ILWQLGTLVGAPVGIALIAGIAIPAMIIGIPVYVGRKIHNRYEGKDVSKHKRNLAIAGGV 420
ILWQLGTLVGAPVGIALIAGIAIPAMIIGIPVYVGRKIHNRYEGKDVSKHKRNLAIAGGV
Sbjct: 361 ILWQLGTLVGAPVGIALIAGIAIPAMIIGIPVYVGRKIHNRYEGKDVSKHKRNLAIAGGV 420
Query: 421 TLSVIVSPVVAAVTVGIGVPIMLAYVYGVVPISLCRSGGCGVSAGNGKGVRIEFDDENDI 480
TLSVIVSPVVAAVTVGIGVPIMLAYVYGVVPISLCRSGGCGVSAGNGKGVRIEFDDENDI
Sbjct: 421 TLSVIVSPVVAAVTVGIGVPIMLAYVYGVVPISLCRSGGCGVSAGNGKGVRIEFDDENDI 480
Query: 481 NVGGTNTAVDTTSVAEARHNPSIGEGSVGGLTGSLSASGSHMDRIGAIRDNLSETASTMA 540
NVGGTNTAVDTTSVAEARHNPSIGEGSVGGLTGSLSASGSHMDRIGAIRDNLSETASTMA
Sbjct: 481 NVGGTNTAVDTTSVAEARHNPSIGEGSVGGLTGSLSASGSHMDRIGAIRDNLSETASTMA 540
Query: 541 LAGASITGSLSGSAMVNCFNRLEVQADVQKERYSLSGESGTVSLGTVSDNASTKAMAGSI 600
LAGASITGSLSGSAMVNCFNRLEVQADVQKERYSLSGESGTVSLGTVSDNASTKAMAGSI
Sbjct: 541 LAGASITGSLSGSAMVNCFNRLEVQADVQKERYSLSGESGTVSLGTVSDNASTKAMAGSI 600
Query: 601 LNSYIPLDKEGNSMEVQVDIESKPSKFRHNSGSSSVDDGSATRSHAGGSSSGLPEGKSSA 660
LNSYIPLDKEGNSMEVQVDIESKPSKFRHNSGSSSVDDGSATRSHAGGSSSGLPEGKSSA
Sbjct: 601 LNSYIPLDKEGNSMEVQVDIESKPSKFRHNSGSSSVDDGSATRSHAGGSSSGLPEGKSSA 660
Query: 661 TKWSKEATAGKKSKSGKLRKKGNMKINETREDMDAQLLEQQSTNSSEFEAPSLSDSMPSV 720
TKWSKEATAGKKSKSGKLRKKGNMKINETREDMDAQLLEQQSTNSSEFEAPSLSDSMPSV
Sbjct: 661 TKWSKEATAGKKSKSGKLRKKGNMKINETREDMDAQLLEQQSTNSSEFEAPSLSDSMPSV 720
Query: 721 ADSHSSHFSEFSCSDLESMKTSCSHGSSDYHTRFATVNILPEVENDRLENSPHQCSISVV 780
ADSHSSHFSEFSCSDLESMKTSCSHGSSDYHTRFATVNILPEVENDRLENSPHQCSISVV
Sbjct: 721 ADSHSSHFSEFSCSDLESMKTSCSHGSSDYHTRFATVNILPEVENDRLENSPHQCSISVV 780
Query: 781 TQTASCSEVSQLNHIAEEHGNNGIKPNVDLYFGDALKETNNNHSHQTMELKVAIQTEI 838
TQTASCSEVSQLNHIAEEHGNNGIKPNVDLYFGDALKETNNNHSHQTMELKVAIQTEI
Sbjct: 781 TQTASCSEVSQLNHIAEEHGNNGIKPNVDLYFGDALKETNNNHSHQTMELKVAIQTEI 838
>gi|188219577 ring finger protein 19B isoform a [Homo sapiens]
Length = 732
Score = 759 bits (1961), Expect = 0.0
Identities = 390/610 (63%), Positives = 451/610 (73%), Gaps = 24/610 (3%)
Query: 130 IECPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEISESRVNISCPECTERFNPHDIR 189
+ECPLCL+R +R P +++C HRSC DCLR YLR+EISESRV ISCPEC+ER NPHDIR
Sbjct: 117 VECPLCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVPISCPECSERLNPHDIR 176
Query: 190 LILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCGYAVIAFGCASCPKLTCGREGCGTE 249
L+L+D LM KYEEFMLRR+L +DPDCRWCPAPDCGYAVIA+GCASCPKLTC REGC TE
Sbjct: 177 LLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCGYAVIAYGCASCPKLTCEREGCQTE 236
Query: 250 FCYHCKQIWHPNQTCDAARQERAQSLRLRTIRSSSISYSQESGAAADDIKPCPRCAAYII 309
FCYHCKQIWHPNQTCD ARQ+RAQ+LR+RT +S +SY QESG A DDIKPCPRC+AYII
Sbjct: 237 FCYHCKQIWHPNQTCDMARQQRAQTLRVRTKHTSGLSYGQESGPA-DDIKPCPRCSAYII 295
Query: 310 KMNDGSCNHMTCAVCGCEFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKKILWQLGTLV 369
KMNDGSCNHMTCAVCGCEFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKKILWQLGTL+
Sbjct: 296 KMNDGSCNHMTCAVCGCEFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKKILWQLGTLI 355
Query: 370 GAPVGIALIAGIAIPAMIIGIPVYVGRKIHNRYEGKDVSKHKRNLAIAGGVTLSVIVSPV 429
GAPVGI+LIAGIAIPAM+IGIPVYVGRKIH+RYEG+ SKHKRNLAI GGVTLSVI SPV
Sbjct: 356 GAPVGISLIAGIAIPAMVIGIPVYVGRKIHSRYEGRKTSKHKRNLAITGGVTLSVIASPV 415
Query: 430 VAAVTVGIGVPIMLAYVYGVVPISLCRSGGCGVSAGNGKGVRIEFDDENDINVGGTNTAV 489
+AAV+VGIGVPIMLAYVYGVVPISLCR GGCGVS NGKGV+IEFD+++ G T
Sbjct: 416 IAAVSVGIGVPIMLAYVYGVVPISLCRGGGCGVSTANGKGVKIEFDEDD-----GPITVA 470
Query: 490 DTTSVAEARHNPSIGEGSVGGLTGSLSASGSHMDRIGAIRDNLSETASTMALAGASITGS 549
D A NPSIGE S+ GLT LS SGS D + ++ SETAS AL+G +++G
Sbjct: 471 DAW---RALKNPSIGESSIEGLTSVLSTSGSPTDGLSVMQGPYSETASFAALSGGTLSGG 527
Query: 550 LSGSAMVNCFNRLEVQADVQKERYSLSGESGTVSLGTVSDNASTKAMAGSILNSYIPLDK 609
+ S ++RLEVQADVQKE + T SLG +SDNAST+AMAGSI++SY P D+
Sbjct: 528 ILSSGK-GKYSRLEVQADVQKEIF----PKDTASLGAISDNASTRAMAGSIISSYNPQDR 582
Query: 610 EGNSMEVQVDIESKPSKFRHNSGSSSVDD----GSATRSHAGGSSSGLPEGKSSATKWSK 665
E N+ME+QVDIE+KPS ++ SGSS+ D + GS G E S
Sbjct: 583 ECNNMEIQVDIEAKPSHYQLVSGSSTEDSLHVHAQMAENEEEGSGGGGSEEDPPCRHQSC 642
Query: 666 EATAGKKSKSGKLRKKGNMKINETREDMDAQLLEQQSTNSSEFEAP-SLSDSMPSV---- 720
E SK + I E DAQ + S E +P S + + PS
Sbjct: 643 EQKDCLASKPWDISLAQPESIRSDLESSDAQSDDVPDITSDECGSPRSHTAACPSTPRAQ 702
Query: 721 -ADSHSSHFS 729
A S S+H +
Sbjct: 703 GAPSPSAHMN 712
>gi|188219579 ring finger protein 19B isoform b [Homo sapiens]
Length = 587
Score = 722 bits (1864), Expect = 0.0
Identities = 349/480 (72%), Positives = 396/480 (82%), Gaps = 15/480 (3%)
Query: 130 IECPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEISESRVNISCPECTERFNPHDIR 189
+ECPLCL+R +R P +++C HRSC DCLR YLR+EISESRV ISCPEC+ER NPHDIR
Sbjct: 117 VECPLCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVPISCPECSERLNPHDIR 176
Query: 190 LILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCGYAVIAFGCASCPKLTCGREGCGTE 249
L+L+D LM KYEEFMLRR+L +DPDCRWCPAPDCGYAVIA+GCASCPKLTC REGC TE
Sbjct: 177 LLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCGYAVIAYGCASCPKLTCEREGCQTE 236
Query: 250 FCYHCKQIWHPNQTCDAARQERAQSLRLRTIRSSSISYSQESGAAADDIKPCPRCAAYII 309
FCYHCKQIWHPNQTCD ARQ+RAQ+LR+RT +S +SY QESG DDIKPCPRC+AYII
Sbjct: 237 FCYHCKQIWHPNQTCDMARQQRAQTLRVRTKHTSGLSYGQESGP--DDIKPCPRCSAYII 294
Query: 310 KMNDGSCNHMTCAVCGCEFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKKILWQLGTLV 369
KMNDGSCNHMTCAVCGCEFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKKILWQLGTL+
Sbjct: 295 KMNDGSCNHMTCAVCGCEFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKKILWQLGTLI 354
Query: 370 GAPVGIALIAGIAIPAMIIGIPVYVGRKIHNRYEGKDVSKHKRNLAIAGGVTLSVIVSPV 429
GAPVGI+LIAGIAIPAM+IGIPVYVGRKIH+RYEG+ SKHKRNLAI GGVTLSVI SPV
Sbjct: 355 GAPVGISLIAGIAIPAMVIGIPVYVGRKIHSRYEGRKTSKHKRNLAITGGVTLSVIASPV 414
Query: 430 VAAVTVGIGVPIMLAYVYGVVPISLCRSGGCGVSAGNGKGVRIEFDDENDINVGGTNTAV 489
+AAV+VGIGVPIMLAYVYGVVPISLCR GGCGVS NGKGV+IEFD+++ G T
Sbjct: 415 IAAVSVGIGVPIMLAYVYGVVPISLCRGGGCGVSTANGKGVKIEFDEDD-----GPITVA 469
Query: 490 DTTSVAEARHNPSIGEGSVGGLTGSLSASGSHMDRIGAIRDNLSETASTMALAGASITGS 549
D A NPSIGE S+ GLT LS SGS D + ++ SETAS AL+G +++G
Sbjct: 470 DAW---RALKNPSIGESSIEGLTSVLSTSGSPTDGLSVMQGPYSETASFAALSGGTLSGG 526
Query: 550 LSGSAMVNCFNRLEVQADVQKERYSLSGESGTVSLGTVSDNASTKAMAGSILNSYIPLDK 609
+ S ++RLEVQADVQKE + T SLG +SDNAST+AMAGSI++SY P D+
Sbjct: 527 ILSSGK-GKYSRLEVQADVQKEIF----PKDTASLGAISDNASTRAMAGSIISSYNPQDR 581
>gi|38045938 ring finger protein 144 [Homo sapiens]
Length = 292
Score = 108 bits (269), Expect = 3e-23
Identities = 76/274 (27%), Positives = 121/274 (44%), Gaps = 30/274 (10%)
Query: 130 IECPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEISES-RVNISCPE--CTER--FN 184
+ C LCL + ++ I C C CL+QY+ + I E ISCP+ C ++
Sbjct: 18 VSCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQ 77
Query: 185 PHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCGYAVIAF---GCASCPKLTC 241
++I +++ ++ M++Y++ R ++ DP WCPA C AV G + + C
Sbjct: 78 ENEIECMVAAEI-MQRYKKLQFEREVLFDPCRTWCPASTC-QAVCQLQDVGLQTPQPVQC 135
Query: 242 GREGCGTEFCYHCKQIWHPNQTCDAARQERAQSLRLRTIRSSSISYSQESGAAADDIKPC 301
+ C EFC CK WHP Q C + +S+ +E A IK C
Sbjct: 136 --KACRMEFCSTCKASWHPGQGC-----PETMPITFLPGETSAAFKMEEDDA---PIKRC 185
Query: 302 PRCAAYIIKMNDGSCNHMTCAVCGCEFCWLCMKEISD----LHYLSPSGCTFWGKKPWSR 357
P+C YI + D C M C C FCW C++ + D +HY C K
Sbjct: 186 PKCKVYIER--DEGCAQMMCKNCKHAFCWYCLESLDDDFLLIHY-DKGPCR---NKLGHS 239
Query: 358 KKKILWQLGTLVGAPVGIALIAGIAIPAMIIGIP 391
+ ++W +VG G L+ +A P +++ P
Sbjct: 240 RASVIWHRTQVVGIFAGFGLLLLVASPFLLLATP 273
>gi|187761373 ariadne ubiquitin-conjugating enzyme E2 binding
protein homolog 1 [Homo sapiens]
Length = 557
Score = 101 bits (251), Expect = 3e-21
Identities = 61/208 (29%), Positives = 93/208 (44%), Gaps = 23/208 (11%)
Query: 132 CPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEISESRVN--ISCPE--CTERFNPHD 187
C +C L + F + C H+ C+ C +YL +I E + ISCP C + +
Sbjct: 186 CQICYLNYPNSYFTGL-ECGHKFCMQCWSEYLTTKIMEEGMGQTISCPAHGCDILVDDNT 244
Query: 188 IRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCGYAVIAFGCASCPKLTCGREGCG 247
+ +++D + KY+ + ++ + +WCPAPDC + V P R CG
Sbjct: 245 VMRLITDSKVKLKYQHLITNSFVECNRLLKWCPAPDCHHVV----KVQYPDAKPVRCKCG 300
Query: 248 TEFCYHCKQIWHPNQTCDAARQERAQSLRLRTIRSSSISYSQESGAAADDIKPCPRCAAY 307
+FC++C + WH C L+ S+ S A + K CP+C
Sbjct: 301 RQFCFNCGENWHDPVKCK----------WLKKWIKKCDDDSETSNWIAANTKECPKCHVT 350
Query: 308 IIKMNDGSCNHMTC--AVCGCEFCWLCM 333
I K DG CNHM C C EFCW+C+
Sbjct: 351 IEK--DGGCNHMVCRNQNCKAEFCWVCL 376
>gi|50284696 IBR domain containing 2 [Homo sapiens]
Length = 303
Score = 99.4 bits (246), Expect = 1e-20
Identities = 71/273 (26%), Positives = 111/273 (40%), Gaps = 24/273 (8%)
Query: 130 IECPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEISESRVN-ISCPE--CTER--FN 184
I C LCL S D+ + C C CL+QY+++ I E + I+CP+ C
Sbjct: 28 ITCKLCLCEQSLDKMTTLQECQCIFCTACLKQYMQLAIREGCGSPITCPDMVCLNHGTLQ 87
Query: 185 PHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCGYAVIAFGCASCPKLTCGRE 244
+I ++ D + Y+ R + DP WCP DC +
Sbjct: 88 EAEIACLVPVD-QFQLYQRLKFEREVHLDPYRTWCPVADCQTVCPVASSDPGQPVLVECP 146
Query: 245 GCGTEFCYHCKQIWHPNQTCDAARQERAQSLRLRTIRSSSISYSQESGAAADDIKPCPRC 304
C +FC CK WH +C +Q + L T + E+ IK CP C
Sbjct: 147 SCHLKFCSCCKDAWHAEVSC-----RDSQPIVLPTEHRALFGTDAEA-----PIKQCPVC 196
Query: 305 AAYIIKMNDGSCNHMTCAVCGCEFCWLCMKEISD---LHYLSPSGCTFWGKKPWSRKKKI 361
Y I+ N+G C M C C FCW C++ + + L + C K + +
Sbjct: 197 RVY-IERNEG-CAQMMCKNCKHTFCWYCLQNLDNDIFLRHYDKGPCR---NKLGHSRASV 251
Query: 362 LWQLGTLVGAPVGIALIAGIAIPAMIIGIPVYV 394
+W +VG VG+ +IA + P +++ P +
Sbjct: 252 MWNRTQVVGILVGLGIIALVTSPLLLLASPCII 284
>gi|148596953 ankyrin repeat and IBR domain containing 1 [Homo
sapiens]
Length = 1089
Score = 95.1 bits (235), Expect = 2e-19
Identities = 69/248 (27%), Positives = 107/248 (43%), Gaps = 29/248 (11%)
Query: 111 TNTSSDNGLTSISKQIGDFIE--CPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEIS 168
T SS IS GD C +C+ S P M C H C C +L ++I
Sbjct: 310 TTRSSVTSPDEISLSPGDLDTSLCDICMCSISVFEDPVDMPCGHDFCRGCWESFLNLKIQ 369
Query: 169 ESRV-NISCP--ECTERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCG 225
E NI CP +C + I ++S + + ++Y +F ++ ++ +P +WCP P C
Sbjct: 370 EGEAHNIFCPAYDCFQLVPVDIIESVVSKE-MDKRYLQFDIKAFVENNPAIKWCPTPGCD 428
Query: 226 YAV--------------IAFGCASCPKLTCGREGCGTEFCYHCKQIWHPNQTCDAARQER 271
AV ++F P + CG+ G FC+ C H C +
Sbjct: 429 RAVRLTKQGSNTSGSDTLSFPLLRAPAVDCGK---GHLFCWECLGEAHEPCDCQTWKNWL 485
Query: 272 AQSLRLRTIRSSSISYSQESGAAA----DDIKPCPRCAAYIIKMNDGSCNHMTCAVCGCE 327
+ ++ +S + E A + KPC C + I K N+G CNHM CA C +
Sbjct: 486 QKITEMKPEELVGVSEAYEDAANCLWLLTNSKPCANCKSPIQK-NEG-CNHMQCAKCKYD 543
Query: 328 FCWLCMKE 335
FCW+C++E
Sbjct: 544 FCWICLEE 551
>gi|5453557 ariadne homolog 2 [Homo sapiens]
Length = 493
Score = 87.0 bits (214), Expect = 6e-17
Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 19/205 (9%)
Query: 132 CPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEISES-RVNISC--PECTERFNPHDI 188
C +C+ K+ + C H+ C C Q+ + + + V +SC +C R +
Sbjct: 139 CAVCMQFVRKENLLSL-ACQHQFCRSCWEQHCSVLVKDGVGVGVSCMAQDCPLRTPEDFV 197
Query: 189 RLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCGYAVIAFGCASCPKLTCGREGCGT 248
+L ++ L EKY ++ R ++ + + CP DC VI ++ C R C
Sbjct: 198 FPLLPNEELREKYRRYLFRDYVESHYQLQLCPGADCPM-VIRVQEPRARRVQCNR--CNE 254
Query: 249 EFCYHCKQIWHPNQTCDAARQERAQSLRLRTIRSSSISYSQESGAAADDIKPCPRCAAYI 308
FC+ C+Q++H C +R + S+ + + K CP+C I
Sbjct: 255 VFCFKCRQMYHAPTDCAT----------IRKWLTKCADDSETANYISAHTKDCPKCNICI 304
Query: 309 IKMNDGSCNHMTCAVCGCEFCWLCM 333
K +G CNHM C+ C +FCW+C+
Sbjct: 305 EK--NGGCNHMQCSKCKHDFCWMCL 327
>gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo
sapiens]
Length = 2517
Score = 82.8 bits (203), Expect = 1e-15
Identities = 63/215 (29%), Positives = 93/215 (43%), Gaps = 17/215 (7%)
Query: 132 CPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEISESRV-NISCP--ECTERFNPHDI 188
CP+C+ D + C H C C +YL I ++ V N +CP +C + I
Sbjct: 2070 CPVCVSPLGCDDDLPSLCCMHYCCKSCWNEYLTTRIEQNLVLNCTCPIADCPAQPTGAFI 2129
Query: 189 RLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCGYAVIA---FGCASCPKLTCGREG 245
R I+S ++ KYE+ +LR ++ + + WC P ++ GC + TC +
Sbjct: 2130 RAIVSSPEVISKYEKALLRGYVESCSNLTWCTNPQGCDRILCRQGLGCGT----TCSK-- 2183
Query: 246 CGTEFCYHCKQIWHPNQTCDAARQERAQSLRLRTIRSSSISYSQESGAAADDIKPCPRCA 305
CG C++C P A+ +Q + +Q A K CP C
Sbjct: 2184 CGWASCFNCS---FPEAHYPASCGHMSQWVDDGGYYDGMSVEAQSKHLAKLISKRCPSCQ 2240
Query: 306 AYIIKMNDGSCNHMTCAVCGCEFCWLCMKEISDLH 340
A I K N+G C HMTCA C FCW C+K H
Sbjct: 2241 APIEK-NEG-CLHMTCAKCNHGFCWRCLKSWKPNH 2273
>gi|34577102 ring finger protein 14 isoform 1 [Homo sapiens]
Length = 474
Score = 76.3 bits (186), Expect = 1e-13
Identities = 54/226 (23%), Positives = 86/226 (38%), Gaps = 27/226 (11%)
Query: 132 CPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEISESRVN-ISCPE--CTERFNPHDI 188
C +C + C H C CL+ Y I+I + +V ++CPE C P +
Sbjct: 220 CSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEPKCPSVATPGQV 279
Query: 189 RLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCGYAVIAFGCASCPKLTCGREGCGT 248
+ ++ + L +Y+ +L+ L D +CP P C V+ C C C
Sbjct: 280 KELVEAE-LFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQE--PGCTMGICS--SCNF 334
Query: 249 EFCYHCKQIWHPNQTC-----------------DAARQERAQSLRLRTIRSSSISYSQES 291
FC C+ +H C D A + + + ++ +
Sbjct: 335 AFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRYGKRVIQKALEEMESK 394
Query: 292 GAAADDIKPCPRCAAYIIKMNDGSCNHMTCAVCGCEFCWLCMKEIS 337
+ K CP C I K++ CN MTC C FCW+CM +S
Sbjct: 395 EWLEKNSKSCPCCGTPIEKLD--GCNKMTCTGCMQYFCWICMGSLS 438
>gi|34577100 ring finger protein 14 isoform 1 [Homo sapiens]
Length = 474
Score = 76.3 bits (186), Expect = 1e-13
Identities = 54/226 (23%), Positives = 86/226 (38%), Gaps = 27/226 (11%)
Query: 132 CPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEISESRVN-ISCPE--CTERFNPHDI 188
C +C + C H C CL+ Y I+I + +V ++CPE C P +
Sbjct: 220 CSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEPKCPSVATPGQV 279
Query: 189 RLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCGYAVIAFGCASCPKLTCGREGCGT 248
+ ++ + L +Y+ +L+ L D +CP P C V+ C C C
Sbjct: 280 KELVEAE-LFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQE--PGCTMGICS--SCNF 334
Query: 249 EFCYHCKQIWHPNQTC-----------------DAARQERAQSLRLRTIRSSSISYSQES 291
FC C+ +H C D A + + + ++ +
Sbjct: 335 AFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRYGKRVIQKALEEMESK 394
Query: 292 GAAADDIKPCPRCAAYIIKMNDGSCNHMTCAVCGCEFCWLCMKEIS 337
+ K CP C I K++ CN MTC C FCW+CM +S
Sbjct: 395 EWLEKNSKSCPCCGTPIEKLD--GCNKMTCTGCMQYFCWICMGSLS 438
>gi|34577098 ring finger protein 14 isoform 1 [Homo sapiens]
Length = 474
Score = 76.3 bits (186), Expect = 1e-13
Identities = 54/226 (23%), Positives = 86/226 (38%), Gaps = 27/226 (11%)
Query: 132 CPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEISESRVN-ISCPE--CTERFNPHDI 188
C +C + C H C CL+ Y I+I + +V ++CPE C P +
Sbjct: 220 CSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEPKCPSVATPGQV 279
Query: 189 RLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCGYAVIAFGCASCPKLTCGREGCGT 248
+ ++ + L +Y+ +L+ L D +CP P C V+ C C C
Sbjct: 280 KELVEAE-LFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQE--PGCTMGICS--SCNF 334
Query: 249 EFCYHCKQIWHPNQTC-----------------DAARQERAQSLRLRTIRSSSISYSQES 291
FC C+ +H C D A + + + ++ +
Sbjct: 335 AFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRYGKRVIQKALEEMESK 394
Query: 292 GAAADDIKPCPRCAAYIIKMNDGSCNHMTCAVCGCEFCWLCMKEIS 337
+ K CP C I K++ CN MTC C FCW+CM +S
Sbjct: 395 EWLEKNSKSCPCCGTPIEKLD--GCNKMTCTGCMQYFCWICMGSLS 438
>gi|34577096 ring finger protein 14 isoform 2 [Homo sapiens]
Length = 348
Score = 76.3 bits (186), Expect = 1e-13
Identities = 54/226 (23%), Positives = 86/226 (38%), Gaps = 27/226 (11%)
Query: 132 CPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEISESRVN-ISCPE--CTERFNPHDI 188
C +C + C H C CL+ Y I+I + +V ++CPE C P +
Sbjct: 94 CSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEPKCPSVATPGQV 153
Query: 189 RLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCGYAVIAFGCASCPKLTCGREGCGT 248
+ ++ + L +Y+ +L+ L D +CP P C V+ C C C
Sbjct: 154 KELVEAE-LFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQE--PGCTMGICS--SCNF 208
Query: 249 EFCYHCKQIWHPNQTC-----------------DAARQERAQSLRLRTIRSSSISYSQES 291
FC C+ +H C D A + + + ++ +
Sbjct: 209 AFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRYGKRVIQKALEEMESK 268
Query: 292 GAAADDIKPCPRCAAYIIKMNDGSCNHMTCAVCGCEFCWLCMKEIS 337
+ K CP C I K++ CN MTC C FCW+CM +S
Sbjct: 269 EWLEKNSKSCPCCGTPIEKLD--GCNKMTCTGCMQYFCWICMGSLS 312
>gi|4757762 ring finger protein 14 isoform 1 [Homo sapiens]
Length = 474
Score = 76.3 bits (186), Expect = 1e-13
Identities = 54/226 (23%), Positives = 86/226 (38%), Gaps = 27/226 (11%)
Query: 132 CPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEISESRVN-ISCPE--CTERFNPHDI 188
C +C + C H C CL+ Y I+I + +V ++CPE C P +
Sbjct: 220 CSICFCEKLGSECMYFLECRHVYCKACLKDYFEIQIRDGQVQCLNCPEPKCPSVATPGQV 279
Query: 189 RLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCGYAVIAFGCASCPKLTCGREGCGT 248
+ ++ + L +Y+ +L+ L D +CP P C V+ C C C
Sbjct: 280 KELVEAE-LFARYDRLLLQSSLDLMADVVYCPRPCCQLPVMQE--PGCTMGICS--SCNF 334
Query: 249 EFCYHCKQIWHPNQTC-----------------DAARQERAQSLRLRTIRSSSISYSQES 291
FC C+ +H C D A + + + ++ +
Sbjct: 335 AFCTLCRLTYHGVSPCKVTAEKLMDLRNEYLQADEANKRLLDQRYGKRVIQKALEEMESK 394
Query: 292 GAAADDIKPCPRCAAYIIKMNDGSCNHMTCAVCGCEFCWLCMKEIS 337
+ K CP C I K++ CN MTC C FCW+CM +S
Sbjct: 395 EWLEKNSKSCPCCGTPIEKLD--GCNKMTCTGCMQYFCWICMGSLS 438
>gi|46370057 ring finger protein 216 isoform b [Homo sapiens]
Length = 866
Score = 69.3 bits (168), Expect = 1e-11
Identities = 62/243 (25%), Positives = 98/243 (40%), Gaps = 38/243 (15%)
Query: 127 GDFIECPLCLLRHSKDRFPDIMTCH--HRSCVDCLRQYLRIEISES-RVNISCPE--CTE 181
G IEC C + + F ++ C H C +CL +Y + + S ++ +SC E CT
Sbjct: 510 GQLIECRCC---YGEFPFEELTQCADAHLFCKECLIRYAQEAVFGSGKLELSCMEGSCTC 566
Query: 182 RFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCGYAVIAFGCASCPKLTC 241
F ++ +L +L + YE A D P C + + + + +C
Sbjct: 567 SFPTSELEKVLPQTILYKYYERKAEEEVAAAYAD-ELVRCPSCSFPALLD--SDVKRFSC 623
Query: 242 GREGCGTEFCYHCKQIW--HPNQTCDAARQERAQSLRLRTIRSSSISYSQESGAAADDIK 299
C E C C+ +W H TC+ ++ ++ RT S E A I+
Sbjct: 624 PNPHCRKETCRKCQGLWKEHNGLTCEELAEK--DDIKYRT--------SIEEKMTAARIR 673
Query: 300 PCPRCAAYIIKMNDGSCNHMTCAVCGCEFCWLCMKEISDL-----HYLSP-------SGC 347
C +C +IK CN M+C CG + C+LC I+ H SP S C
Sbjct: 674 KCHKCGTGLIKSE--GCNRMSCR-CGAQMCYLCRVSINGYDHFCQHPRSPGAPCQECSRC 730
Query: 348 TFW 350
+ W
Sbjct: 731 SLW 733
>gi|46358403 ring finger protein 216 isoform a [Homo sapiens]
Length = 923
Score = 69.3 bits (168), Expect = 1e-11
Identities = 62/243 (25%), Positives = 98/243 (40%), Gaps = 38/243 (15%)
Query: 127 GDFIECPLCLLRHSKDRFPDIMTCH--HRSCVDCLRQYLRIEISES-RVNISCPE--CTE 181
G IEC C + + F ++ C H C +CL +Y + + S ++ +SC E CT
Sbjct: 567 GQLIECRCC---YGEFPFEELTQCADAHLFCKECLIRYAQEAVFGSGKLELSCMEGSCTC 623
Query: 182 RFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCGYAVIAFGCASCPKLTC 241
F ++ +L +L + YE A D P C + + + + +C
Sbjct: 624 SFPTSELEKVLPQTILYKYYERKAEEEVAAAYAD-ELVRCPSCSFPALLD--SDVKRFSC 680
Query: 242 GREGCGTEFCYHCKQIW--HPNQTCDAARQERAQSLRLRTIRSSSISYSQESGAAADDIK 299
C E C C+ +W H TC+ ++ ++ RT S E A I+
Sbjct: 681 PNPHCRKETCRKCQGLWKEHNGLTCEELAEK--DDIKYRT--------SIEEKMTAARIR 730
Query: 300 PCPRCAAYIIKMNDGSCNHMTCAVCGCEFCWLCMKEISDL-----HYLSP-------SGC 347
C +C +IK CN M+C CG + C+LC I+ H SP S C
Sbjct: 731 KCHKCGTGLIKSE--GCNRMSCR-CGAQMCYLCRVSINGYDHFCQHPRSPGAPCQECSRC 787
Query: 348 TFW 350
+ W
Sbjct: 788 SLW 790
>gi|109150431 ring finger protein 31 [Homo sapiens]
Length = 1072
Score = 61.6 bits (148), Expect = 3e-09
Identities = 67/293 (22%), Positives = 106/293 (36%), Gaps = 67/293 (22%)
Query: 131 ECPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEISESRV-NISCPECTERFNPHDIR 189
EC +C +R + +C C DC RQ+ I + E + ++ CP C D +
Sbjct: 698 ECAVCGWALPHNRMQALTSCECTICPDCFRQHFTIALKEKHITDMVCPACGRPDLTDDTQ 757
Query: 190 LI---------LSDDVLMEKYEEF---MLRRWLVADPDCRWCPAPDCGYAVIAFGC-ASC 236
L+ L + + + Y F + L+ DP WC G+ A+C
Sbjct: 758 LLSYFSTLDIQLRESLEPDAYALFHKKLTEGVLMRDPKFLWCAQCSFGFIYEREQLEATC 817
Query: 237 PKLTCGREGCGTEFCYHCKQIW---HPNQTCDAAR--------QERAQSLRLRTIRSSSI 285
P+ C FC CK+ W H ++C+ + + +AQ L +
Sbjct: 818 PQ-------CHQTFCVRCKRQWEEQHRGRSCEDFQNWKRMNDPEYQAQGLAM-------- 862
Query: 286 SYSQESGAAADDIKPCPRCAAYIIKMNDGSCNHMTCAVCGCEFCWLCMKEI--------- 336
Y QE+G CP+C + + G C H C C +FC C
Sbjct: 863 -YLQENGI------DCPKC-KFSYALARGGCMHFHCTQCRHQFCSGCYNAFYAKNKCPEP 914
Query: 337 -----SDLHYLSPSGCTFWGKKPWS--RKKKILWQLGTLVGA--PVGIALIAG 380
LH P C F+ + W+ R +K+L + P G + G
Sbjct: 915 NCRVKKSLHGHHPRDCLFY-LRDWTALRLQKLLQDNNVMFNTEPPAGARAVPG 966
>gi|169790973 parkin isoform 3 [Homo sapiens]
Length = 316
Score = 60.1 bits (144), Expect = 8e-09
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 14/123 (11%)
Query: 219 CPAPDCGYAVIAFGCASCPKLTC---GREGCGTEFCYHCKQIWHPNQTCDAARQERAQSL 275
CP P CG ++ K+TC GCG FC CK+ +H + C A + +
Sbjct: 183 CPRPGCGAGLLPE--PDQRKVTCEGGNGLGCGFAFCRECKEAYHEGE-CSAVFEASGTTT 239
Query: 276 RLRTIRSSSISYSQESGAAADDI----KPCPRCAAYIIKMNDGSCNHMTC--AVCGCEFC 329
+ + + ++ A+ + I KPCPRC + K +G C HM C C E+C
Sbjct: 240 QAYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEK--NGGCMHMKCPQPQCRLEWC 297
Query: 330 WLC 332
W C
Sbjct: 298 WNC 300
>gi|169790971 parkin isoform 2 [Homo sapiens]
Length = 437
Score = 60.1 bits (144), Expect = 8e-09
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 14/123 (11%)
Query: 219 CPAPDCGYAVIAFGCASCPKLTC---GREGCGTEFCYHCKQIWHPNQTCDAARQERAQSL 275
CP P CG ++ K+TC GCG FC CK+ +H + C A + +
Sbjct: 304 CPRPGCGAGLLPE--PDQRKVTCEGGNGLGCGFAFCRECKEAYHEGE-CSAVFEASGTTT 360
Query: 276 RLRTIRSSSISYSQESGAAADDI----KPCPRCAAYIIKMNDGSCNHMTC--AVCGCEFC 329
+ + + ++ A+ + I KPCPRC + K +G C HM C C E+C
Sbjct: 361 QAYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEK--NGGCMHMKCPQPQCRLEWC 418
Query: 330 WLC 332
W C
Sbjct: 419 WNC 421
>gi|169790969 parkin isoform 1 [Homo sapiens]
Length = 465
Score = 60.1 bits (144), Expect = 8e-09
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 14/123 (11%)
Query: 219 CPAPDCGYAVIAFGCASCPKLTC---GREGCGTEFCYHCKQIWHPNQTCDAARQERAQSL 275
CP P CG ++ K+TC GCG FC CK+ +H + C A + +
Sbjct: 332 CPRPGCGAGLLPE--PDQRKVTCEGGNGLGCGFAFCRECKEAYHEGE-CSAVFEASGTTT 388
Query: 276 RLRTIRSSSISYSQESGAAADDI----KPCPRCAAYIIKMNDGSCNHMTC--AVCGCEFC 329
+ + + ++ A+ + I KPCPRC + K +G C HM C C E+C
Sbjct: 389 QAYRVDERAAEQARWEAASKETIKKTTKPCPRCHVPVEK--NGGCMHMKCPQPQCRLEWC 446
Query: 330 WLC 332
W C
Sbjct: 447 WNC 449
>gi|5454168 RanBP-type and C3HC4-type zinc finger containing 1
isoform 1 [Homo sapiens]
Length = 468
Score = 53.5 bits (127), Expect = 8e-07
Identities = 53/222 (23%), Positives = 87/222 (39%), Gaps = 48/222 (21%)
Query: 131 ECPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEISESRVNISCP------ECTERFN 184
ECP+C + + C H C +CL+ +R + +SCP C+ +
Sbjct: 239 ECPVCYSVLAPGEAVVLRECLHTFCRECLQGTIR---NSQEAEVSCPFIDNTYSCSGKLL 295
Query: 185 PHDIRLILSDDVLMEKYEEFMLRRWLVAD-----------PDCR-WCPAPDCGYAVIAFG 232
+I+ +L+ E Y+ F+ +A+ PDC+ WC D V F
Sbjct: 296 EREIKALLTP----EDYQRFLDLGISIAENRSAFSYHCKTPDCKGWCFFED---DVNEFT 348
Query: 233 CASCPKLTCGREGCGTEFCYHCKQIWHPNQTCDAARQE---RAQSLRLRTIRSSSISYSQ 289
C C + C CK I H C +++ RAQ+ + +
Sbjct: 349 CPVCFHVNC----------LLCKAI-HEQMNCKEYQEDLALRAQNDVAARQTTEMLKVML 397
Query: 290 ESGAAADDIKPCPRCAAYIIKMNDGSCNHMTCAVCGCEFCWL 331
+ G A CP+C +++ DG C+ + C VC E CW+
Sbjct: 398 QQGEAMR----CPQCQI-VVQKKDG-CDWIRCTVCHTEICWV 433
>gi|144953898 RanBP-type and C3HC4-type zinc finger containing 1
isoform 2 [Homo sapiens]
Length = 510
Score = 53.5 bits (127), Expect = 8e-07
Identities = 53/222 (23%), Positives = 87/222 (39%), Gaps = 48/222 (21%)
Query: 131 ECPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEISESRVNISCP------ECTERFN 184
ECP+C + + C H C +CL+ +R + +SCP C+ +
Sbjct: 281 ECPVCYSVLAPGEAVVLRECLHTFCRECLQGTIR---NSQEAEVSCPFIDNTYSCSGKLL 337
Query: 185 PHDIRLILSDDVLMEKYEEFMLRRWLVAD-----------PDCR-WCPAPDCGYAVIAFG 232
+I+ +L+ E Y+ F+ +A+ PDC+ WC D V F
Sbjct: 338 EREIKALLTP----EDYQRFLDLGISIAENRSAFSYHCKTPDCKGWCFFED---DVNEFT 390
Query: 233 CASCPKLTCGREGCGTEFCYHCKQIWHPNQTCDAARQE---RAQSLRLRTIRSSSISYSQ 289
C C + C CK I H C +++ RAQ+ + +
Sbjct: 391 CPVCFHVNC----------LLCKAI-HEQMNCKEYQEDLALRAQNDVAARQTTEMLKVML 439
Query: 290 ESGAAADDIKPCPRCAAYIIKMNDGSCNHMTCAVCGCEFCWL 331
+ G A CP+C +++ DG C+ + C VC E CW+
Sbjct: 440 QQGEAMR----CPQCQI-VVQKKDG-CDWIRCTVCHTEICWV 475
>gi|22749145 ring finger protein 217 [Homo sapiens]
Length = 275
Score = 50.4 bits (119), Expect = 7e-06
Identities = 48/203 (23%), Positives = 79/203 (38%), Gaps = 37/203 (18%)
Query: 165 IEISESRVNISCP--ECTERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAP 222
+++ +V I CP EC E + L+ + + KY+ F+ + D P P
Sbjct: 1 MKVQLGQVEIKCPITECFEFLEETTVVYNLTHEDSI-KYKYFLE----LGRIDSSTKPCP 55
Query: 223 DC---------GYAVIAFGCASCPKLTCGREGCGTEFCYHCKQIWHPNQTCDAARQERAQ 273
C G+ S K+ C C +C+ C WH C +E +
Sbjct: 56 QCKHFTTFKKKGHIPTPSRSESKYKIQCPT--CQFVWCFKCHSPWHEGVNC----KEYKK 109
Query: 274 SLRLRTIRSSSISYSQESGAAADDIKPCPRCAAYIIKMNDGSCNHMTCAVCGCEFCWLCM 333
+L +S I + Q + + CP+C +I + C+HMTC+ C FC+ C
Sbjct: 110 GDKLLRHWASEIEHGQRNA------QKCPKCKIHIQRTE--GCDHMTCSQCNTNFCYRCG 161
Query: 334 KEISDLHY-------LSPSGCTF 349
+ L + LS GC +
Sbjct: 162 ERYRQLRFFGDHTSNLSIFGCKY 184
>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
Length = 1301
Score = 46.6 bits (109), Expect = 1e-04
Identities = 67/319 (21%), Positives = 120/319 (37%), Gaps = 11/319 (3%)
Query: 475 DDENDINVGGTNTAVDTTSVAEARHNPSIGEGSVGGLTGSLSASGSHMDRIGAIRDNLSE 534
D N N ++ + D++ + + + + + S + + S S D D+ S
Sbjct: 658 DSSNSSNSSDSSDSSDSSDSSSSSDSSNSSDSSDSSDSSNSSESSDSSDS----SDSDSS 713
Query: 535 TASTMALAGASITGSLSGSAMVNCFNRLEVQADVQKERYSLSGESGTVSLGTVSDNASTK 594
+S + + +S + S + S + N + S S +S S + S ++S
Sbjct: 714 DSSDSSNSNSSDSDSSNSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDS 773
Query: 595 AMAGSILNSYIPLDKEGNSMEVQVDIESKPSKFRHNSGSS-SVDDGSATRSHAGGSSSGL 653
+ + NS D +S S S +S SS S D S+ S + SS
Sbjct: 774 SDSSDSSNSSDSNDSSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSSDSS 833
Query: 654 PEGKSSATKWSKEATAGKKSKSGKLRKKGNMKINETREDMDAQLLEQQSTNSSEFEAPSL 713
SS + S +++ G S S N +++ + D+ S +S E+ +
Sbjct: 834 DSSNSSDSSDSSDSSDGSDSDSSNRSDSSNS--SDSSDSSDSSNSSDSSDSSDSNESSNS 891
Query: 714 SDSMPSV----ADSHSSHFSEFSCSDLESMKTSCSHGSSDYHTRFATVNILPEVENDRLE 769
SDS S +DS S S S S +S S SSD + N ++
Sbjct: 892 SDSSDSSNSSDSDSSDSSNSSDSSDSSNSSDSSESSNSSDNSNSSDSSNSSDSSDSSDSS 951
Query: 770 NSPHQCSISVVTQTASCSE 788
NS + S + ++ S+
Sbjct: 952 NSSDSSNSSDSSNSSDSSD 970
Score = 44.3 bits (103), Expect = 5e-04
Identities = 60/280 (21%), Positives = 106/280 (37%), Gaps = 7/280 (2%)
Query: 476 DENDINVGGTNTAVDTTSVAEARHNPSIGEGSVGGLTGSLSASGSHMDRIGAIRDNLSET 535
D +D + +N++ D+ S + S + S + S S D + + S++
Sbjct: 565 DSSDSDSSDSNSSSDSDSSDSDSSDSSDSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSKS 624
Query: 536 ASTMALAGASITGSLSGSAMVNCFNRLEVQADVQKERYSLSGESGTVS------LGTVSD 589
S+ + + +S + S S S+ N + + S S +S S + S
Sbjct: 625 DSSKSESDSSDSDSKSDSSDSNSSDSSDNSDSSDSSNSSNSSDSSDSSDSSDSSSSSDSS 684
Query: 590 NASTKAMAGSILNSYIPLDKEGNSMEVQVDIESKPSKFRHNSGSSSVDDGSATRSHAGGS 649
N+S + + NS D +S D + +S SS+ D S + + + S
Sbjct: 685 NSSDSSDSSDSSNSSESSDSSDSSDSDSSDSSDSSNSNSSDSDSSNSSDSSDSSNSSDSS 744
Query: 650 SSGLPEGKSSATKWSKEATAGKKSKSGKLRKKGNMKINETREDMDAQLLEQQSTNSSEFE 709
S S ++ S + + S S + + D S+NSS+
Sbjct: 745 DSSDSSNSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSNDSSNSSDSSDSSNSSDSS 804
Query: 710 APSLSDSMPSVADSHSSHFSEFSCSDLESMKTSCSHGSSD 749
S S +DS SS+ S+ S S +S +S S SSD
Sbjct: 805 NSSDSSDSSDSSDSDSSNSSDSSNSS-DSSDSSNSSDSSD 843
Score = 43.9 bits (102), Expect = 6e-04
Identities = 70/358 (19%), Positives = 144/358 (40%), Gaps = 23/358 (6%)
Query: 476 DENDINVGGTNTAV----DTTSVAEARHNPSIGEGSVGGLTGSLSASGSHMDRIGAIRDN 531
DE+ N G+++ D+ S ++ ++ S G G+ G S SG D+
Sbjct: 496 DESKDNGNGSDSKGAEDDDSDSTSDTNNSDSNGNGNNGNDDNDKSDSGKGKS------DS 549
Query: 532 LSETASTMALAGASITGSLSGSAMVNCFNRLEVQADVQKERYSLSGESGTVSLGTVSDNA 591
+S + + S S S S+ N + + +D S S S + + SD++
Sbjct: 550 SDSDSSDSSNSSDSSDSSDSDSSDSNSSSDSD-SSDSDSSDSSDSDSSDSSNSSDSSDSS 608
Query: 592 STKAMAGSILNSYIPLDKEGNSMEVQVDIESKPSKFRHNSGSSSVDDGSATRSHAGGSSS 651
+ + S +S D + + D +SK NS SS + S+ S++ SS
Sbjct: 609 DSSDSSDSSDSSDSKSDSSKSESDSS-DSDSKSDSSDSNSSDSSDNSDSSDSSNSSNSSD 667
Query: 652 GLPEGKSSATKWSKEATAGKKSKSGKLRKKGNMKINETREDMDAQLLEQQSTNSSEFEAP 711
SS + S +++ S + +E+ + D S++S ++
Sbjct: 668 SSDSSDSSDSSSSSDSSNSSDSSDSS----DSSNSSESSDSSD-------SSDSDSSDSS 716
Query: 712 SLSDSMPSVADSHSSHFSEFSCSDLESMKTSCSHGSSDYHTRFATVNILPEVENDRLENS 771
S+S S +DS +S S S + +S +S S SSD + N ++ +S
Sbjct: 717 DSSNSNSSDSDSSNSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSDS 776
Query: 772 PHQCSISVVTQTASCSEVSQLNHIAEEHGNNGIKPNVDLYFGDALKETNNNHSHQTME 829
+ S +++ S+ S ++ ++ ++ + D D+ +++++S + +
Sbjct: 777 SDSSNSSDSNDSSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSSDSSD 834
Score = 42.4 bits (98), Expect = 0.002
Identities = 63/294 (21%), Positives = 110/294 (37%), Gaps = 20/294 (6%)
Query: 465 GNGKGVRIEFDDENDINV--------GGTNTAVDTTSVAEARHNPSIGEGSVGGLTGSLS 516
GNG + DD++D G N D +++ S S + + S
Sbjct: 502 GNGSDSKGAEDDDSDSTSDTNNSDSNGNGNNGNDDNDKSDSGKGKSDSSDSDSSDSSNSS 561
Query: 517 ASGSHMDRIGAIRDNLSETASTMALAGASITGSLSGSAMVNCFNRLEVQADVQKERYSLS 576
S D + ++ S++ S+ + + S S S+ N + + S S
Sbjct: 562 DSSDSSDSDSSDSNSSSDSDSSDSDSSDSSDSDSSDSS--NSSDSSDSSDSSDSSDSSDS 619
Query: 577 GESGTVSLGTVSDNASTKAMAGSILNSYIPLDKEGNSMEVQVDIESKPSKFRHNSGSSS- 635
+S + S + SD++ + + + S + NS + + +S S NS SS
Sbjct: 620 SDSKSDSSKSESDSSDSDSKSDS---------SDSNSSDSSDNSDSSDSSNSSNSSDSSD 670
Query: 636 VDDGSATRSHAGGSSSGLPEGKSSATKWSKEATAGKKSKSGKLRKKGNMKINETREDMDA 695
D S + S + S+S S ++ S+ + + S S + N + D
Sbjct: 671 SSDSSDSSSSSDSSNSSDSSDSSDSSNSSESSDSSDSSDSDSSDSSDSSNSNSSDSDSSN 730
Query: 696 QLLEQQSTNSSEFEAPSLSDSMPSVADSHSSHFSEFSCSDLESMKTSCSHGSSD 749
S+NSS+ S S + +DS S S S +S +S S SSD
Sbjct: 731 SSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSD 784
Score = 41.6 bits (96), Expect = 0.003
Identities = 57/274 (20%), Positives = 105/274 (38%), Gaps = 18/274 (6%)
Query: 476 DENDINVGGTNTAVDTTSVAEARHNPSIGEGSVGGLTGSLSASGSHMDRIGAIRDNLSET 535
D +D N ++ D++ + + ++ + S + S S S + D + + S
Sbjct: 641 DSSDSNSSDSSDNSDSSDSSNSSNSSDSSDSSDSSDSSSSSDSSNSSDSSDSSDSSNSSE 700
Query: 536 ASTMALAGASITGSLSGSAMVNCFNRLEVQADVQKERYSLSGESGTVSLGTVSDNASTKA 595
+S + + S + S S+ N +D S S +S S + S ++S +
Sbjct: 701 SSDSSDSSDSDSSDSSDSSNSN-------SSDSDSSNSSDSSDSSNSSDSSDSSDSSNSS 753
Query: 596 MAGSILNSYIPLDKEGNSMEVQVDIESKPSKFRHNSGSSSVDDGSATRSHAGGSSSGLPE 655
+ +S NS + +S S NS S+ S+ S + SS
Sbjct: 754 DSSDSSDS-------SNSSDSSDSSDSSDSSDSSNSSDSNDSSNSSDSSDSSNSSDSSNS 806
Query: 656 GKSSATKWSKEATAGKKSKSGKLRKKGNMKINETREDMDAQLLEQQSTNSSEFEAPSLSD 715
SS + S ++ + S S + + D S +S+ ++ + SD
Sbjct: 807 SDSSDSSDSSDSDSSNSSDSSNSSDSSDSSNSSDSSDSSDSSDGSDSDSSNRSDSSNSSD 866
Query: 716 SMPSVADSHSSHFSEFSCSDLESMKTSCSHGSSD 749
S S S+SS S+ S +S ++S S SSD
Sbjct: 867 SSDSSDSSNSSDSSDSS----DSNESSNSSDSSD 896
Score = 40.0 bits (92), Expect = 0.009
Identities = 55/281 (19%), Positives = 105/281 (37%), Gaps = 9/281 (3%)
Query: 476 DENDINVGGTNTAVDTTSVAEARHNPSIGEGSVGGLTGSLSASGSHMDRIGAIRDNLSET 535
D +D + ++ + ++ S N S S S S+ S+ D+ + +
Sbjct: 706 DSSDSDSSDSSDSSNSNSSDSDSSNSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSNSS 765
Query: 536 ASTMALAGASITGSLSGSAMVNCFNRLEVQADVQKERYSLSGESGTVSLGTVSDNASTKA 595
S+ + + + S + S + N + S S +S S + SD++++
Sbjct: 766 DSSDSSDSSDSSDSSNSSDSNDSSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSDSSNSSD 825
Query: 596 MAGSILNSYIPLDKEGNSMEVQVDIESKPSKFRHNSGSSSVDDGSATRSHAGGSSSGLPE 655
+ S +S +S + + S + S SS+ D S + + S S
Sbjct: 826 SSNSSDSS--DSSNSSDSSDSSDSSDGSDSDSSNRSDSSNSSDSSDSSDSSNSSDSSDSS 883
Query: 656 GKSSATKWSKEATAGKKSKSGKLRKKGNMKINETREDMDAQLLEQQSTNSSEFEAPSLSD 715
+ ++ S + + S S + +++ D+ S NS+ ++ + SD
Sbjct: 884 DSNESSNSSDSSDSSNSSDSDSSDSSNSSDSSDSSNSSDSSESSNSSDNSNSSDSSNSSD 943
Query: 716 SMPSVADSHSSHFSEFS-------CSDLESMKTSCSHGSSD 749
S S S+SS S S SD S +S S SSD
Sbjct: 944 SSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSDSSNSSD 984
Score = 40.0 bits (92), Expect = 0.009
Identities = 56/274 (20%), Positives = 108/274 (39%), Gaps = 11/274 (4%)
Query: 476 DENDINVGGTNTAVDTTSVAEARHNPSIGEGSVGGLTGSLSASGSHMDRIGAIRDNLSET 535
D +D N ++ D++ + + + S + + S ++S S + N S++
Sbjct: 881 DSSDSNESSNSS--DSSDSSNSSDSDSSDSSNSSDSSDSSNSSDSSESSNSSDNSNSSDS 938
Query: 536 ASTMALAGASITGSLSGSAMVNCFNRLEVQADVQKERYSLSGESGTVSLGTVSDNASTKA 595
+++ + +S + + S S+ + + +D S S S S + S ++S +
Sbjct: 939 SNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSDSSDSSDSS 998
Query: 596 MAGSILNSYIPLDKEGNSMEVQVDIESKPSKFRHNSGSSSVDDGSATRSHAGGSSSGLPE 655
+ + +S D +S S S +S SS D S + + S S
Sbjct: 999 DSSNSSDSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSNSS 1058
Query: 656 GKSSATKWSKEATAGKKSKSGKLRKKGNMKINETREDMDAQLLEQQSTNSSEFEAPSLSD 715
S ++ S + + S S +E+ + D+ S +S ++ SD
Sbjct: 1059 DSSDSSDSSDSSDSSDSSDSS--------DSSESSDSSDSSNSSDSSDSSDSSDSSDSSD 1110
Query: 716 SMPSVADSHSSHFSEFSCSDLESMKTSCSHGSSD 749
S S S SS+ S+ S S +S +S S SSD
Sbjct: 1111 SSDSSDSSDSSNSSDSSDSS-DSSDSSDSSNSSD 1143
Score = 39.7 bits (91), Expect = 0.012
Identities = 53/275 (19%), Positives = 99/275 (36%), Gaps = 2/275 (0%)
Query: 475 DDENDINVGGTNTAVDTTSVAEARHNPSIGEGSVGGLTGSLSASGSHMDRIGAIRDNLSE 534
D N + ++ + D ++ +++ ++ + S + S S + + N S+
Sbjct: 916 DSSNSSDSSESSNSSDNSNSSDSSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSD 975
Query: 535 TASTMALAGASITGSLSGSAMVNCFNRLEVQADVQKERYSLSGESGTVSLGTVSDNASTK 594
++ + + +S + S S+ + + +D S S S S + S N+S
Sbjct: 976 SSDSSNSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDS--SDSSNSSDSSNSSDSSNSSDS 1033
Query: 595 AMAGSILNSYIPLDKEGNSMEVQVDIESKPSKFRHNSGSSSVDDGSATRSHAGGSSSGLP 654
+ + +S D +S S S +S SS D S + + S S
Sbjct: 1034 SDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSESSDSSDSSNS 1093
Query: 655 EGKSSATKWSKEATAGKKSKSGKLRKKGNMKINETREDMDAQLLEQQSTNSSEFEAPSLS 714
S ++ S + + S S N + D S++SS+ S S
Sbjct: 1094 SDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSSDSSESSDS 1153
Query: 715 DSMPSVADSHSSHFSEFSCSDLESMKTSCSHGSSD 749
+DS S S S +S +S S SSD
Sbjct: 1154 SDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSD 1188
Score = 39.3 bits (90), Expect = 0.015
Identities = 53/265 (20%), Positives = 96/265 (36%), Gaps = 6/265 (2%)
Query: 490 DTTSVAEARHNPSIGEGSVGGLTGSLSASGSHMDRIGAIRDNLSETASTMALAGASITGS 549
D++ ++++ + S E +S S+ D+ + S+ + + + S
Sbjct: 615 DSSDSSDSKSDSSKSESDSSDSDSKSDSSDSNSSDSSDNSDSSDSSNSSNSSDSSDSSDS 674
Query: 550 LSGSAMVNCFNRLEVQADVQKERYSLSGESGTVSLGTVSDNASTKAMAGSILNSYIPLDK 609
S+ + N + S S +S S SD++ + S +S D
Sbjct: 675 SDSSSSSDSSNSSDSSDSSDSSNSSESSDSSDSSDSDSSDSSDSSNSNSSDSDSSNSSDS 734
Query: 610 EGNSMEVQVDIESKPSKFRHNSGSSSVDDGSATRSHAGGSSSGLPEGKSSATKWSKEATA 669
+S S S +S SS + S + + S S S + S + +
Sbjct: 735 SDSSNSSDSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSNDSSNSSDS 794
Query: 670 GKKSKSGKLRKKGNMKINETREDMDAQLLEQQSTNSSEFEAPSLSDSMPSV-----ADSH 724
S S + + D D+ S +S ++ + SDS S +DS
Sbjct: 795 SDSSNSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSSDSSDSSNSSDSSDSSDSSDGSDSD 854
Query: 725 SSHFSEFSCSDLESMKTSCSHGSSD 749
SS+ S+ S S +S +S S SSD
Sbjct: 855 SSNRSDSSNSS-DSSDSSDSSNSSD 878
Score = 38.9 bits (89), Expect = 0.020
Identities = 53/274 (19%), Positives = 108/274 (39%), Gaps = 8/274 (2%)
Query: 476 DENDINVGGTNTAVDTTSVAEARHNPSIGEGSVGGLTGSLSASGSHMDRIGAIRDNLSET 535
D + + ++ + D+++ +++ + + + S + + S S D N S++
Sbjct: 902 DSDSSDSSNSSDSSDSSNSSDSSESSNSSDNSNSSDSSNSSDSSDSSDS-----SNSSDS 956
Query: 536 ASTMALAGASITGSLSGSAMVNCFNRLEVQADVQKERYSLSGESGTVSLGTVSDNASTKA 595
+++ + +S + + S + N + S S +S S + S ++S +
Sbjct: 957 SNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSS 1016
Query: 596 MAGSILNSYIPLDKEGNSMEVQVDIESKPSKFRHNSGSSSVDDGSATRSHAGGSSSGLPE 655
+ NS + +S S S +S SS+ D S + + S S
Sbjct: 1017 NSSDSSNSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDSS 1076
Query: 656 GKSSATKWSKEATAGKKSKSGKLRKKGNMKINETREDMDAQLLEQQSTNSSEFEAPSLSD 715
S +++ S + + S S + +++ + D+ S +S ++ SD
Sbjct: 1077 DSSDSSESSDSSDSSNSSDSSD--SSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSD 1134
Query: 716 SMPSVADSHSSHFSEFSCSDLESMKTSCSHGSSD 749
S S S SS SE S S +S +S S SSD
Sbjct: 1135 SSDSSNSSDSSDSSESSDSS-DSSDSSDSSDSSD 1167
Score = 38.9 bits (89), Expect = 0.020
Identities = 54/275 (19%), Positives = 101/275 (36%), Gaps = 7/275 (2%)
Query: 475 DDENDINVGGTNTAVDTTSVAEARHNPSIGEGSVGGLTGSLSASGSHMDRIGAIRDNLSE 534
D N + ++ + D++ +++ ++ + S + + S S + D N S+
Sbjct: 978 DSSNSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSNSSDSSNSSDS-----SNSSD 1032
Query: 535 TASTMALAGASITGSLSGSAMVNCFNRLEVQADVQKERYSLSGESGTVSLGTVSDNASTK 594
++ + + +S + S S+ + N + S S +S S + S ++S
Sbjct: 1033 SSDSSDSSDSSDSSDSSDSS--DSSNSSDSSDSSDSSDSSDSSDSSDSSDSSESSDSSDS 1090
Query: 595 AMAGSILNSYIPLDKEGNSMEVQVDIESKPSKFRHNSGSSSVDDGSATRSHAGGSSSGLP 654
+ + +S D +S S S +S SS D S + + + S S
Sbjct: 1091 SNSSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNSSDSSDSSES 1150
Query: 655 EGKSSATKWSKEATAGKKSKSGKLRKKGNMKINETREDMDAQLLEQQSTNSSEFEAPSLS 714
S ++ S + + S S N + D S++SS+ S S
Sbjct: 1151 SDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDS 1210
Query: 715 DSMPSVADSHSSHFSEFSCSDLESMKTSCSHGSSD 749
+DS S S S ES +S S SSD
Sbjct: 1211 SDSSDSSDSSDSSDSSDSSDSNESSDSSDSSDSSD 1245
Score = 38.5 bits (88), Expect = 0.026
Identities = 52/275 (18%), Positives = 100/275 (36%)
Query: 475 DDENDINVGGTNTAVDTTSVAEARHNPSIGEGSVGGLTGSLSASGSHMDRIGAIRDNLSE 534
+ N + ++ + D+ S + + S + + S ++S + + + S+
Sbjct: 887 ESSNSSDSSDSSNSSDSDSSDSSNSSDSSDSSNSSDSSESSNSSDNSNSSDSSNSSDSSD 946
Query: 535 TASTMALAGASITGSLSGSAMVNCFNRLEVQADVQKERYSLSGESGTVSLGTVSDNASTK 594
++ + + +S + S S+ + N + S S +S S + S N+S
Sbjct: 947 SSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSDSSDSSDSSDSSNSSDS 1006
Query: 595 AMAGSILNSYIPLDKEGNSMEVQVDIESKPSKFRHNSGSSSVDDGSATRSHAGGSSSGLP 654
+ + +S D +S S S +S SS D S + + + S S
Sbjct: 1007 SDSSDSSDSSNSSDSSNSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDS 1066
Query: 655 EGKSSATKWSKEATAGKKSKSGKLRKKGNMKINETREDMDAQLLEQQSTNSSEFEAPSLS 714
S ++ S + + + S S + + D S++SS+ S S
Sbjct: 1067 SDSSDSSDSSDSSDSSESSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDS 1126
Query: 715 DSMPSVADSHSSHFSEFSCSDLESMKTSCSHGSSD 749
+DS S S S ES +S S SSD
Sbjct: 1127 SDSSDSSDSSDSSNSSDSSDSSESSDSSDSSDSSD 1161
Score = 38.1 bits (87), Expect = 0.034
Identities = 48/265 (18%), Positives = 98/265 (36%)
Query: 485 TNTAVDTTSVAEARHNPSIGEGSVGGLTGSLSASGSHMDRIGAIRDNLSETASTMALAGA 544
++ + D++ +++ + + + S + +S S + N S+++ + +
Sbjct: 873 SSNSSDSSDSSDSNESSNSSDSSDSSNSSDSDSSDSSNSSDSSDSSNSSDSSESSNSSDN 932
Query: 545 SITGSLSGSAMVNCFNRLEVQADVQKERYSLSGESGTVSLGTVSDNASTKAMAGSILNSY 604
S + S S+ + + +D S + + S + S ++S + + +S
Sbjct: 933 SNSSDSSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSDSS 992
Query: 605 IPLDKEGNSMEVQVDIESKPSKFRHNSGSSSVDDGSATRSHAGGSSSGLPEGKSSATKWS 664
D +S S S ++S SS+ D S + + S S S ++ S
Sbjct: 993 DSSDSSDSSNSSDSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSSDSSDSSDSSDSSDSS 1052
Query: 665 KEATAGKKSKSGKLRKKGNMKINETREDMDAQLLEQQSTNSSEFEAPSLSDSMPSVADSH 724
+ + S S + + D S+NSS+ S S +DS
Sbjct: 1053 DSSNSSDSSDSSDSSDSSDSSDSSDSSDSSESSDSSDSSNSSDSSDSSDSSDSSDSSDSS 1112
Query: 725 SSHFSEFSCSDLESMKTSCSHGSSD 749
S S S + +S +S S SSD
Sbjct: 1113 DSSDSSDSSNSSDSSDSSDSSDSSD 1137
Score = 37.4 bits (85), Expect = 0.058
Identities = 51/277 (18%), Positives = 110/277 (39%), Gaps = 4/277 (1%)
Query: 475 DDENDINVGGTNTAVDTTSVAEARHNPSIGEGSVGGLTGSLSASGSHMDRIGAIRDNLSE 534
D N + ++ + D++ + + + + + + S S + D + N S+
Sbjct: 854 DSSNRSDSSNSSDSSDSSDSSNSSDSSDSSDSNESSNSSDSSDSSNSSDSDSSDSSNSSD 913
Query: 535 TASTMALAGASITGSLSGSAMVNCFNRLEVQADVQKERYSLSGESGTVSLGTVSDNASTK 594
++ + + +S + + S ++ + + +D S S S + SD++ +
Sbjct: 914 SSDSSNSSDSSESSNSSDNSNSSDSSNSSDSSDSSDSSNS-SDSSNSSDSSNSSDSSDSN 972
Query: 595 AMAGSILNSYIPLDKEGNSMEVQVDIESKPSKFRHNSGSSSVDDGSATRSHAGGSSSGLP 654
+ S ++ +S + +S S +S SS S+ S++ SS+
Sbjct: 973 SSDSSDSSNSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSNSSDSSNSSDSSNSSD 1032
Query: 655 EGKSSATKWSKEATAGKKSK--SGKLRKKGNMKINETREDMDAQLLEQQSTNSSEFEAPS 712
SS + S +++ S S + +++ + D+ S +S ++ +
Sbjct: 1033 SSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSESSDSSDSSN 1092
Query: 713 LSDSMPSVADSHSSHFSEFSCSDLESMKTSCSHGSSD 749
SDS S S SS S+ S S +S +S S SSD
Sbjct: 1093 SSDSSDSSDSSDSSDSSDSSDSS-DSSDSSNSSDSSD 1128
Score = 35.4 bits (80), Expect = 0.22
Identities = 39/176 (22%), Positives = 63/176 (35%)
Query: 574 SLSGESGTVSLGTVSDNASTKAMAGSILNSYIPLDKEGNSMEVQVDIESKPSKFRHNSGS 633
S S +S S + S ++S + + +S D +S S S +S S
Sbjct: 1082 SESSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSNS 1141
Query: 634 SSVDDGSATRSHAGGSSSGLPEGKSSATKWSKEATAGKKSKSGKLRKKGNMKINETREDM 693
S D S + + S S S ++ S + + S S + + D
Sbjct: 1142 SDSSDSSESSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDSSDS 1201
Query: 694 DAQLLEQQSTNSSEFEAPSLSDSMPSVADSHSSHFSEFSCSDLESMKTSCSHGSSD 749
S++SS+ S S +DS+ S S S +S +S S SSD
Sbjct: 1202 SDSSDSSDSSDSSDSSDSSDSSDSSDSSDSNESSDSSDSSDSSDSSNSSDSSDSSD 1257
Score = 34.7 bits (78), Expect = 0.38
Identities = 39/174 (22%), Positives = 63/174 (36%)
Query: 576 SGESGTVSLGTVSDNASTKAMAGSILNSYIPLDKEGNSMEVQVDIESKPSKFRHNSGSSS 635
S ES S + S ++S + + +S D +S S S +S SS+
Sbjct: 1081 SSESSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSN 1140
Query: 636 VDDGSATRSHAGGSSSGLPEGKSSATKWSKEATAGKKSKSGKLRKKGNMKINETREDMDA 695
D S + + S S S ++ S + + S S + + D
Sbjct: 1141 SSDSSDSSESSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSDSSDSSD 1200
Query: 696 QLLEQQSTNSSEFEAPSLSDSMPSVADSHSSHFSEFSCSDLESMKTSCSHGSSD 749
S++SS+ S S +DS S+ S S +S +S S SSD
Sbjct: 1201 SSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSNESSDSSDSSDSSDSSNSSDSSD 1254
Score = 34.7 bits (78), Expect = 0.38
Identities = 40/183 (21%), Positives = 70/183 (38%), Gaps = 17/183 (9%)
Query: 576 SGESGTVSLGTVSDNASTKAMAGSILNSYIPLDKEGNSMEVQVDIESKPSKFRHNSGSSS 635
S +S S + S N+S + + +S D +S S S ++S SS
Sbjct: 1126 SSDSSDSSDSSDSSNSSDSSDSSESSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSD 1185
Query: 636 VDDGSATRSHAGGSSSGLPEGKSSATKWSKEATAGKKSKSGKLRKKGNMKINETREDMDA 695
D S + + S S S ++ S + + S S +++ E D+
Sbjct: 1186 SSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDS--------SDSNESSDS 1237
Query: 696 QLLEQQSTNSSEFEAPSLSDSMPSVADSHSSHFSEF---------SCSDLESMKTSCSHG 746
S +S+ ++ SDS S +DS+ S+ S SD +S + +H
Sbjct: 1238 SDSSDSSDSSNSSDSSDSSDSSDSTSDSNDESDSQSKSGNGNNNGSDSDSDSEGSDSNHS 1297
Query: 747 SSD 749
+SD
Sbjct: 1298 TSD 1300
Score = 34.3 bits (77), Expect = 0.49
Identities = 52/275 (18%), Positives = 100/275 (36%), Gaps = 9/275 (3%)
Query: 475 DDENDINVGGTNTAVDTTSVAEARHNPSIGEGSVGGLTGSLSASGSHMDRIGAIRDNLSE 534
D N + ++ + D+++ +++ ++ S + S S D D+
Sbjct: 999 DSSNSSDSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSSDSSDSSDSSDS----SDSSDS 1054
Query: 535 TASTMALAGASITGSLSGSAMVNCFNRLEVQADVQKERYSLSGESGTVSLGTVSDNASTK 594
+ S+ + + + S S + + E S S +S S + S ++S
Sbjct: 1055 SNSSDSSDSSDSSDSSDSSDSSDSSDSSESSDSSDSSNSSDSSDSSDSSDSSDSSDSSDS 1114
Query: 595 AMAGSILNSYIPLDKEGNSMEVQVDIESKPSKFRHNSGSSSVDDGSATRSHAGGSSSGLP 654
+ + NS D +S S S +S SS D S + + S S
Sbjct: 1115 SDSSDSSNSSDSSDSSDSSDSSDSSNSSDSSDSSESSDSSDSSDSSDSSDSSDSSDSSDS 1174
Query: 655 EGKSSATKWSKEATAGKKSKSGKLRKKGNMKINETREDMDAQLLEQQSTNSSEFEAPSLS 714
S+++ S + + S S + +++ + D+ S +S ++ S
Sbjct: 1175 SDSSNSSDSSDSSDSSDSSDSSD-----SSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSS 1229
Query: 715 DSMPSVADSHSSHFSEFSCSDLESMKTSCSHGSSD 749
DS S S SS S+ S S S + S +SD
Sbjct: 1230 DSNESSDSSDSSDSSDSSNSSDSSDSSDSSDSTSD 1264
Score = 32.3 bits (72), Expect = 1.9
Identities = 40/157 (25%), Positives = 65/157 (41%), Gaps = 6/157 (3%)
Query: 598 GSILNS--YIPLDKEGNSMEVQVDIESKPSKFRHNSGSSSVDDGSATRSHAG-GSSSGLP 654
GS NS Y D + SM+ D S ++ +S D+ S++R A S
Sbjct: 442 GSDSNSDGYDSYDFDDKSMQGD-DPNSSDESNGNDDANSESDNNSSSRGDASYNSDESKD 500
Query: 655 EGKSSATKWSKEATAGKKSKSGKLRKKGNMKI-NETREDMDAQLLEQQSTNSSEFEAPSL 713
G S +K +++ + S + GN N+ + D+ + S++S ++ +
Sbjct: 501 NGNGSDSKGAEDDDSDSTSDTNNSDSNGNGNNGNDDNDKSDSGKGKSDSSDSDSSDSSNS 560
Query: 714 SDSMPSV-ADSHSSHFSEFSCSDLESMKTSCSHGSSD 749
SDS S +DS S+ S S S S SSD
Sbjct: 561 SDSSDSSDSDSSDSNSSSDSDSSDSDSSDSSDSDSSD 597
Score = 30.8 bits (68), Expect = 5.5
Identities = 21/87 (24%), Positives = 37/87 (42%)
Query: 621 ESKPSKFRHNSGSSSVDDGSATRSHAGGSSSGLPEGKSSATKWSKEATAGKKSKSGKLRK 680
+S S +S SS + S+ S + SS SS + S ++T+ +S K
Sbjct: 1215 DSSDSSDSSDSSDSSDSNESSDSSDSSDSSDSSNSSDSSDSSDSSDSTSDSNDESDSQSK 1274
Query: 681 KGNMKINETREDMDAQLLEQQSTNSSE 707
GN N + D D++ + + S +
Sbjct: 1275 SGNGNNNGSDSDSDSEGSDSNHSTSDD 1301
>gi|8923040 CDKN2A interacting protein [Homo sapiens]
Length = 580
Score = 41.6 bits (96), Expect = 0.003
Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 16/172 (9%)
Query: 578 ESGTVSLGTVSDNASTKAMAGSILNSYIPLDKEGNSMEVQVDI-ESKPSKFRHNSGSSSV 636
+SG+ + ++++ + + S + +PL S EV++ + SKPS +SG +
Sbjct: 265 QSGSPKKSALEGSSASASQSSSEIE--VPLLGSSGSSEVELPLLSSKPSSETASSGLT-- 320
Query: 637 DDGSATRSHAGGSSSGLPEGKSSATKWSKEATAGKKSKSGKLRKKGNMKINETREDMDAQ 696
S T S A SSS SS T ++ + S + +++ + A
Sbjct: 321 ---SKTSSEASVSSSVAKNSSSSGTSLLTPKSSSSTNTS--------LLTSKSTSQVAAS 369
Query: 697 LLEQQSTNSSEFEAPSLSDSMPSVADSHSSHFSEFSCSDLESMKTSCSHGSS 748
LL +S++ + S S S+ SV+ S S+ S S L S TS S SS
Sbjct: 370 LLASKSSSQTSGSLVSKSTSLASVSQLASKSSSQTSTSQLPSKSTSQSSESS 421
>gi|117938316 tripartite motif-containing 22 [Homo sapiens]
Length = 498
Score = 40.8 bits (94), Expect = 0.005
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 121 SISKQIGDFIECPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT 180
S+ I + CP+CL ++ P + C H C C+ ++ + SR SCP C
Sbjct: 4 SVKVDIEKEVTCPICLELLTE---PLSLDCGHSFCQACITAKIKESVIISRGESSCPVCQ 60
Query: 181 ERFNPHDIR 189
RF P ++R
Sbjct: 61 TRFQPGNLR 69
>gi|22749455 ring finger protein 182 [Homo sapiens]
Length = 247
Score = 40.4 bits (93), Expect = 0.007
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 125 QIGDFIECPLCLLRHS-KDRFPDIMTCHHRSCVDCLRQYLRIEISESRVNISCPECT-ER 182
Q D +EC +C R++ K R P ++ C HR C CL + + S V I CP C E
Sbjct: 13 QASDELECKICYNRYNLKQRKPKVLECCHRVCAKCLYKIIDFGDSPQGV-IVCPFCRFET 71
Query: 183 FNPHDIRLILSDD 195
P D L DD
Sbjct: 72 CLPDDEVSSLPDD 84
>gi|157426898 tripartite motif-containing 10 isoform 1 [Homo
sapiens]
Length = 481
Score = 40.0 bits (92), Expect = 0.009
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 126 IGDFIECPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEISESRVNISCPECTERFNP 185
+ D + CP+C R P + C H C CL +Y I + + +CP C E F P
Sbjct: 10 LADEVNCPIC---QGTLREPVTIDCGHNFCRACLTRYCEIPGPDLEESPTCPLCKEPFRP 66
Query: 186 HDIR 189
R
Sbjct: 67 GSFR 70
>gi|157426896 tripartite motif-containing 10 isoform 2 [Homo
sapiens]
Length = 395
Score = 40.0 bits (92), Expect = 0.009
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 126 IGDFIECPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEISESRVNISCPECTERFNP 185
+ D + CP+C R P + C H C CL +Y I + + +CP C E F P
Sbjct: 10 LADEVNCPIC---QGTLREPVTIDCGHNFCRACLTRYCEIPGPDLEESPTCPLCKEPFRP 66
Query: 186 HDIR 189
R
Sbjct: 67 GSFR 70
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.130 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,410,448
Number of Sequences: 37866
Number of extensions: 1422349
Number of successful extensions: 6404
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 180
Number of HSP's that attempted gapping in prelim test: 5743
Number of HSP's gapped (non-prelim): 534
length of query: 838
length of database: 18,247,518
effective HSP length: 111
effective length of query: 727
effective length of database: 14,044,392
effective search space: 10210272984
effective search space used: 10210272984
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.