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Search of human proteins with 34452681
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|34452681 ring finger protein 10 [Homo sapiens]
(811 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|34452681 ring finger protein 10 [Homo sapiens] 1637 0.0
gi|15011946 tripartite motif protein TRIM5 isoform delta [Homo s... 50 8e-06
gi|15011944 tripartite motif protein TRIM5 isoform gamma [Homo s... 50 8e-06
gi|14719418 tripartite motif protein TRIM5 isoform alpha [Homo s... 48 3e-05
gi|21071052 helicase-like transcription factor [Homo sapiens] 48 3e-05
gi|21071054 helicase-like transcription factor [Homo sapiens] 48 3e-05
gi|237681119 breast cancer 1, early onset isoform 2 [Homo sapiens] 46 1e-04
gi|237681125 breast cancer 1, early onset isoform 5 [Homo sapiens] 46 1e-04
gi|237681123 breast cancer 1, early onset isoform 4 [Homo sapiens] 46 1e-04
gi|6552299 breast cancer 1, early onset isoform 1 [Homo sapiens] 46 1e-04
gi|237858656 ring finger protein 170 isoform b [Homo sapiens] 45 3e-04
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 45 3e-04
gi|237858658 ring finger protein 170 isoform c [Homo sapiens] 45 4e-04
gi|237858654 ring finger protein 170 isoform a [Homo sapiens] 45 4e-04
gi|237858650 ring finger protein 170 isoform a [Homo sapiens] 45 4e-04
gi|56605981 tripartite motif-containing 72 [Homo sapiens] 45 4e-04
gi|5902054 ring finger protein 5 [Homo sapiens] 43 0.001
gi|34482047 adaptor-related protein complex 3, beta 2 subunit [H... 43 0.001
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 43 0.001
gi|209529681 ring finger protein 185 isoform 1 [Homo sapiens] 43 0.001
gi|31542783 ring finger protein 185 isoform 1 [Homo sapiens] 43 0.001
gi|24797089 peroxisome biogenesis factor 10 isoform 1 [Homo sapi... 42 0.002
gi|4505715 peroxisome biogenesis factor 10 isoform 2 [Homo sapiens] 42 0.002
gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens] 42 0.002
gi|153791360 ret finger protein-like 4B [Homo sapiens] 42 0.002
gi|121114298 cullin 4B isoform 1 [Homo sapiens] 41 0.004
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 40 0.007
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ... 40 0.007
gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithor... 40 0.007
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 40 0.009
>gi|34452681 ring finger protein 10 [Homo sapiens]
Length = 811
Score = 1637 bits (4238), Expect = 0.0
Identities = 811/811 (100%), Positives = 811/811 (100%)
Query: 1 MPLSSPNAAATASDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGS 60
MPLSSPNAAATASDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGS
Sbjct: 1 MPLSSPNAAATASDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGS 60
Query: 61 KRYNRKRELSYPKNESFNNQSRRSSSQKSKTFNKMPPQRGGGSSKLFSSSFNGGRRDEVA 120
KRYNRKRELSYPKNESFNNQSRRSSSQKSKTFNKMPPQRGGGSSKLFSSSFNGGRRDEVA
Sbjct: 61 KRYNRKRELSYPKNESFNNQSRRSSSQKSKTFNKMPPQRGGGSSKLFSSSFNGGRRDEVA 120
Query: 121 EAQRAEFSPAQFSGPKKINLNHLLNFTFEPRGQTGHFEGSGHGSWGKRNKWGHKPFNKEL 180
EAQRAEFSPAQFSGPKKINLNHLLNFTFEPRGQTGHFEGSGHGSWGKRNKWGHKPFNKEL
Sbjct: 121 EAQRAEFSPAQFSGPKKINLNHLLNFTFEPRGQTGHFEGSGHGSWGKRNKWGHKPFNKEL 180
Query: 181 FLQANCQFVVSEDQDYTAHFADPDTLVNWDFVEQVRICSHEVPSCPICLYPPTAAKITRC 240
FLQANCQFVVSEDQDYTAHFADPDTLVNWDFVEQVRICSHEVPSCPICLYPPTAAKITRC
Sbjct: 181 FLQANCQFVVSEDQDYTAHFADPDTLVNWDFVEQVRICSHEVPSCPICLYPPTAAKITRC 240
Query: 241 GHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESHQYVVGDTITMQLMKRE 300
GHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESHQYVVGDTITMQLMKRE
Sbjct: 241 GHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESHQYVVGDTITMQLMKRE 300
Query: 301 KGVLVALPKSKWMNVDHPIHLGDEQHSQYSKLLLASKEQVLHRVVLEEKVALEQQLAEEK 360
KGVLVALPKSKWMNVDHPIHLGDEQHSQYSKLLLASKEQVLHRVVLEEKVALEQQLAEEK
Sbjct: 301 KGVLVALPKSKWMNVDHPIHLGDEQHSQYSKLLLASKEQVLHRVVLEEKVALEQQLAEEK 360
Query: 361 HTPESCFIEAAIQELKTREEALSGLAGSRREVTGVVAALEQLVLMAPLAKESVFQPRKGV 420
HTPESCFIEAAIQELKTREEALSGLAGSRREVTGVVAALEQLVLMAPLAKESVFQPRKGV
Sbjct: 361 HTPESCFIEAAIQELKTREEALSGLAGSRREVTGVVAALEQLVLMAPLAKESVFQPRKGV 420
Query: 421 LEYLSAFDEETTEVCSLDTPSRPLALPLVEEEEAVSEPEPEGLPEACDDLELADDNLKEG 480
LEYLSAFDEETTEVCSLDTPSRPLALPLVEEEEAVSEPEPEGLPEACDDLELADDNLKEG
Sbjct: 421 LEYLSAFDEETTEVCSLDTPSRPLALPLVEEEEAVSEPEPEGLPEACDDLELADDNLKEG 480
Query: 481 TICTESSQQEPITKSGFTRLSSSPCYYFYQAEDGQHMFLHPVNVRCLVREYGSLERSPEK 540
TICTESSQQEPITKSGFTRLSSSPCYYFYQAEDGQHMFLHPVNVRCLVREYGSLERSPEK
Sbjct: 481 TICTESSQQEPITKSGFTRLSSSPCYYFYQAEDGQHMFLHPVNVRCLVREYGSLERSPEK 540
Query: 541 ISATVVEIAGYSMSEDVRQRHRYLSHLPLTCEFSICELALQPPVVSKETLEMFSDDIEKR 600
ISATVVEIAGYSMSEDVRQRHRYLSHLPLTCEFSICELALQPPVVSKETLEMFSDDIEKR
Sbjct: 541 ISATVVEIAGYSMSEDVRQRHRYLSHLPLTCEFSICELALQPPVVSKETLEMFSDDIEKR 600
Query: 601 KRQRQKKAREERRRERRIEIEENKKQGKYPEVHIPLENLQQFPAFNSYTCSSDSALGPTS 660
KRQRQKKAREERRRERRIEIEENKKQGKYPEVHIPLENLQQFPAFNSYTCSSDSALGPTS
Sbjct: 601 KRQRQKKAREERRRERRIEIEENKKQGKYPEVHIPLENLQQFPAFNSYTCSSDSALGPTS 660
Query: 661 TEGHGALSISPLSRSPGSHADFLLTPLSPTASQGSPSFCVGSLEEDSPFPSFAQMLRVGK 720
TEGHGALSISPLSRSPGSHADFLLTPLSPTASQGSPSFCVGSLEEDSPFPSFAQMLRVGK
Sbjct: 661 TEGHGALSISPLSRSPGSHADFLLTPLSPTASQGSPSFCVGSLEEDSPFPSFAQMLRVGK 720
Query: 721 AKADVWPKTAPKKDENSLVPPAPVDSDGESDNSDRVPVPSFQNSFSQAIEAAFMKLDTPA 780
AKADVWPKTAPKKDENSLVPPAPVDSDGESDNSDRVPVPSFQNSFSQAIEAAFMKLDTPA
Sbjct: 721 AKADVWPKTAPKKDENSLVPPAPVDSDGESDNSDRVPVPSFQNSFSQAIEAAFMKLDTPA 780
Query: 781 TSDPLSEEKGGKKRKKQKQKLLFSTSVVHTK 811
TSDPLSEEKGGKKRKKQKQKLLFSTSVVHTK
Sbjct: 781 TSDPLSEEKGGKKRKKQKQKLLFSTSVVHTK 811
>gi|15011946 tripartite motif protein TRIM5 isoform delta [Homo
sapiens]
Length = 326
Score = 50.1 bits (118), Expect = 8e-06
Identities = 61/260 (23%), Positives = 103/260 (39%), Gaps = 43/260 (16%)
Query: 221 EVPSCPICLYPPTAAKITRCGHIFCWACIL--HYLSLSEKTWSKCPICYSSVHKKDLKSV 278
E +CPICL T CGH FC AC+ H S+ +K S CP+C S ++++
Sbjct: 11 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR-- 68
Query: 279 VATESHQYVVGDTITMQLMKREKGVLVALPKSKWMNVDHPIHLGD-------EQHSQYSK 331
+++V ++ +K + VDH G+ E
Sbjct: 69 ----PNRHVANIVEKLREVKL---------SPEGQKVDHCARHGEKLLLFCQEDGKVICW 115
Query: 332 LLLASKEQVLHRVVLEEKVALEQQLAEEKHTPESCFIEAAIQELKTREEALSGLAGSRRE 391
L S+E H L E+VA E Q+ ++AA++ L+ +++ L RE
Sbjct: 116 LCERSQEHRGHHTFLTEEVAQEYQVK----------LQAALEMLRQKQQEAEELEADIRE 165
Query: 392 VTGVVAALEQLVLMAPLAKESVFQPRKGVLEYLSAFDEETTEVCSLDTPSRPLALPLVEE 451
Q LA F+ + +L++ EE+ E+ +L+ + L
Sbjct: 166 EKASWKTQIQYDKTNVLAD---FEQLRDILDW-----EESNELQNLEKEEEDILKSLTNS 217
Query: 452 EEAVSEPEPEGLPEACDDLE 471
E + + + + L E DLE
Sbjct: 218 ETEMVQ-QTQSLRELISDLE 236
>gi|15011944 tripartite motif protein TRIM5 isoform gamma [Homo
sapiens]
Length = 347
Score = 50.1 bits (118), Expect = 8e-06
Identities = 61/260 (23%), Positives = 103/260 (39%), Gaps = 43/260 (16%)
Query: 221 EVPSCPICLYPPTAAKITRCGHIFCWACIL--HYLSLSEKTWSKCPICYSSVHKKDLKSV 278
E +CPICL T CGH FC AC+ H S+ +K S CP+C S ++++
Sbjct: 11 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR-- 68
Query: 279 VATESHQYVVGDTITMQLMKREKGVLVALPKSKWMNVDHPIHLGD-------EQHSQYSK 331
+++V ++ +K + VDH G+ E
Sbjct: 69 ----PNRHVANIVEKLREVKL---------SPEGQKVDHCARHGEKLLLFCQEDGKVICW 115
Query: 332 LLLASKEQVLHRVVLEEKVALEQQLAEEKHTPESCFIEAAIQELKTREEALSGLAGSRRE 391
L S+E H L E+VA E Q+ ++AA++ L+ +++ L RE
Sbjct: 116 LCERSQEHRGHHTFLTEEVAQEYQVK----------LQAALEMLRQKQQEAEELEADIRE 165
Query: 392 VTGVVAALEQLVLMAPLAKESVFQPRKGVLEYLSAFDEETTEVCSLDTPSRPLALPLVEE 451
Q LA F+ + +L++ EE+ E+ +L+ + L
Sbjct: 166 EKASWKTQIQYDKTNVLAD---FEQLRDILDW-----EESNELQNLEKEEEDILKSLTNS 217
Query: 452 EEAVSEPEPEGLPEACDDLE 471
E + + + + L E DLE
Sbjct: 218 ETEMVQ-QTQSLRELISDLE 236
>gi|14719418 tripartite motif protein TRIM5 isoform alpha [Homo
sapiens]
Length = 493
Score = 48.1 bits (113), Expect = 3e-05
Identities = 62/260 (23%), Positives = 106/260 (40%), Gaps = 43/260 (16%)
Query: 221 EVPSCPICLYPPTAAKITRCGHIFCWACIL--HYLSLSEKTWSKCPICYSSVHKKDLKSV 278
E +CPICL T CGH FC AC+ H S+ +K S CP+C S ++++
Sbjct: 11 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR-- 68
Query: 279 VATESHQYVVGDTITMQLMKREKGVLVALPKSKWMNVDHPIHLGD-------EQHSQYSK 331
+++V L+++ + V ++ K VDH G+ E
Sbjct: 69 ----PNRHVA------NLVEKLREVKLSPEGQK---VDHCARHGEKLLLFCQEDGKVICW 115
Query: 332 LLLASKEQVLHRVVLEEKVALEQQLAEEKHTPESCFIEAAIQELKTREEALSGLAGSRRE 391
L S+E H E+VA E Q+ ++AA++ L+ +++ L RE
Sbjct: 116 LCERSQEHRGHHTFPTEEVAQEYQVK----------LQAALEMLRQKQQEAEELEADIRE 165
Query: 392 VTGVVAALEQLVLMAPLAKESVFQPRKGVLEYLSAFDEETTEVCSLDTPSRPLALPLVEE 451
Q LA F+ + +L++ EE+ E+ +L+ + L
Sbjct: 166 EKASWKTQIQYDKTNVLAD---FEQLRDILDW-----EESNELQNLEKEEEDILKSLTNS 217
Query: 452 EEAVSEPEPEGLPEACDDLE 471
E + + + + L E DLE
Sbjct: 218 ETEMVQ-QTQSLRELISDLE 236
>gi|21071052 helicase-like transcription factor [Homo sapiens]
Length = 1009
Score = 48.1 bits (113), Expect = 3e-05
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 225 CPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDL 275
C ICL T IT C H+FC CI + +E+ +KCP+C + +H+ +L
Sbjct: 760 CAICLDSLTVPVITHCAHVFCKPCICQVIQ-NEQPHAKCPLCRNDIHEDNL 809
>gi|21071054 helicase-like transcription factor [Homo sapiens]
Length = 1009
Score = 48.1 bits (113), Expect = 3e-05
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 225 CPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDL 275
C ICL T IT C H+FC CI + +E+ +KCP+C + +H+ +L
Sbjct: 760 CAICLDSLTVPVITHCAHVFCKPCICQVIQ-NEQPHAKCPLCRNDIHEDNL 809
>gi|237681119 breast cancer 1, early onset isoform 2 [Homo sapiens]
Length = 1884
Score = 46.2 bits (108), Expect = 1e-04
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 212 VEQVRICSHEVPSCPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVH 271
V+ V ++ CPICL T+C HIFC C+L L+ +K S+CP+C + +
Sbjct: 11 VQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLN-QKKGPSQCPLCKNDIT 69
Query: 272 KKDLK 276
K+ L+
Sbjct: 70 KRSLQ 74
>gi|237681125 breast cancer 1, early onset isoform 5 [Homo sapiens]
Length = 699
Score = 46.2 bits (108), Expect = 1e-04
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 212 VEQVRICSHEVPSCPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVH 271
V+ V ++ CPICL T+C HIFC C+L L+ +K S+CP+C + +
Sbjct: 11 VQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLN-QKKGPSQCPLCKNDIT 69
Query: 272 KKDLK 276
K+ L+
Sbjct: 70 KRSLQ 74
>gi|237681123 breast cancer 1, early onset isoform 4 [Homo sapiens]
Length = 759
Score = 46.2 bits (108), Expect = 1e-04
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 212 VEQVRICSHEVPSCPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVH 271
V+ V ++ CPICL T+C HIFC C+L L+ +K S+CP+C + +
Sbjct: 11 VQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLN-QKKGPSQCPLCKNDIT 69
Query: 272 KKDLK 276
K+ L+
Sbjct: 70 KRSLQ 74
>gi|6552299 breast cancer 1, early onset isoform 1 [Homo sapiens]
Length = 1863
Score = 46.2 bits (108), Expect = 1e-04
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 212 VEQVRICSHEVPSCPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVH 271
V+ V ++ CPICL T+C HIFC C+L L+ +K S+CP+C + +
Sbjct: 11 VQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLN-QKKGPSQCPLCKNDIT 69
Query: 272 KKDLK 276
K+ L+
Sbjct: 70 KRSLQ 74
>gi|237858656 ring finger protein 170 isoform b [Homo sapiens]
Length = 200
Score = 45.1 bits (105), Expect = 3e-04
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 225 CPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTW---SKCPICYSSVHKKDLKSVVAT 281
CPICL+ + T CGH+FC ACI+ Y +W CPIC + S +
Sbjct: 87 CPICLHQASFPVETNCGHLFCGACIIAYWRYG--SWLGAISCPIC-RQTGSSEKSSRASE 143
Query: 282 ESHQYVV 288
++HQ V
Sbjct: 144 QTHQEAV 150
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 45.1 bits (105), Expect = 3e-04
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 3/114 (2%)
Query: 4 SSPNAAATASDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGSKRY 63
SS ++++++S +S S+SSS+SS SS P A GP KP S K G +R
Sbjct: 2616 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERRS 2675
Query: 64 NRKRELSYPKNESFNNQSRRSSSQKSKTFNKMPPQRGGGSSKLFSSSFNGGRRD 117
R+ P + +++S S + + + P R SS S G R D
Sbjct: 2676 RSPRK---PIDSLRDSRSLSYSPVERRRPSPQPSPRDQQSSSSERGSRRGQRGD 2726
Score = 39.3 bits (90), Expect = 0.015
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Query: 4 SSPNAAATASDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKS---DGKNSSGS 60
SS ++++++S +S +SSS S GSS QP + P+ PK +G+ +
Sbjct: 2540 SSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPKEAVREGRPPEPT 2599
Query: 61 KRYNRKRELSYPKNESFNNQSRRSSSQKSKTFNKMPPQRGGGSSKLFSS 109
++R S + S ++ S SSS S + + SS SS
Sbjct: 2600 PAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2648
Score = 36.2 bits (82), Expect = 0.13
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 2 PLSSPNAAATASDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGSK 61
P + P + + S K G + +SS S + PP+S +A S P+ K+ + +
Sbjct: 1629 PRALPRRSRSGSS-SKGRGPSPEGSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTPPR 1687
Query: 62 RYNRKRELSYPKNESFNNQSRRSSSQKSKTFNKMPPQ 98
R + + + + +S RS+S +T ++ PP+
Sbjct: 1688 RRSSRSSPELTRKARLSRRS-RSASSSPETRSRTPPR 1723
Score = 35.4 bits (80), Expect = 0.21
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 14/106 (13%)
Query: 3 LSSPNAAATASDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGSKR 62
LSSP + A + + S S SS K Q PPR + +G S+PK+ +
Sbjct: 762 LSSPRSKAKSRLSLRRSLSGSSPCPK--QKSQTPPRRSRSG---SSQPKAKSRTPP---- 812
Query: 63 YNRKRELSYP----KNESFNNQSRRSSSQKSKTFNKMPPQRGGGSS 104
R R S P K+++ + QS SSS K + PP++G +S
Sbjct: 813 -RRSRSSSSPPPKQKSKTPSRQSHSSSSPHPKVKSGTPPRQGSITS 857
Score = 35.4 bits (80), Expect = 0.21
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 7/107 (6%)
Query: 4 SSPNAAATASDMDKNSGSNSS------SASSGSSKGQQPPRSASAGPAGES-KPKSDGKN 56
SSP + + S S SS S SS + PR+ + G S PK G
Sbjct: 1712 SSPETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQ 1771
Query: 57 SSGSKRYNRKRELSYPKNESFNNQSRRSSSQKSKTFNKMPPQRGGGS 103
S S+ K + ++ S ++QS Q+S++ +++ +R GGS
Sbjct: 1772 RSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGS 1818
Score = 35.0 bits (79), Expect = 0.28
Identities = 37/142 (26%), Positives = 56/142 (39%), Gaps = 12/142 (8%)
Query: 8 AAATASDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGSKRYNRKR 67
+A A K S+SSS+SS SS S+S+ +G S S+G + KR
Sbjct: 2519 SALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKR 2578
Query: 68 ELS---YPKN--------ESFNNQSRRSSSQKSKTFNKMPPQRGGGSSKLFSSSFNGGRR 116
S PK E + +R SS S + + SS SSS +
Sbjct: 2579 VPSPTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2638
Query: 117 DEVAEAQRAEFSPAQFSGPKKI 138
+ + + SPA+ GP+ +
Sbjct: 2639 SSSSSSSSSSPSPAK-PGPQAL 2659
Score = 31.6 bits (70), Expect = 3.1
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 23 SSSASSGSSKGQQPPRSASAGPAGESK-PKSDGKNSSGSKRYNRKRELSYPKNESFNNQS 81
SSS+ S + K ++ + G ES P+ + K SS K++ + E K+ S +S
Sbjct: 177 SSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSSKKKKHRSESESKKRKHRSPTPKS 236
Query: 82 RRSSSQKSK 90
+R S K +
Sbjct: 237 KRKSKDKKR 245
Score = 30.4 bits (67), Expect = 6.9
Identities = 34/144 (23%), Positives = 57/144 (39%), Gaps = 14/144 (9%)
Query: 5 SPNAAATASDMDKNSGSNSSSASSGSSKGQQPP---RSASAGPA--GESKPKSDGKNSSG 59
SP + + S SA G S + P RS S PA G S+ ++ + S
Sbjct: 536 SPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSR 595
Query: 60 SKRYNRKRELSYPKNESFNNQSRRSSSQKSKTFNKM-------PPQRGGGSSKLFSSSFN 112
S+ R+R S ++SR + ++S+T + + P R G S+ + +
Sbjct: 596 SRTPTRRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARR 655
Query: 113 GGRRDE--VAEAQRAEFSPAQFSG 134
G R + +PA+ SG
Sbjct: 656 GRSRSRTPARRGRSRSRTPARRSG 679
>gi|237858658 ring finger protein 170 isoform c [Homo sapiens]
Length = 174
Score = 44.7 bits (104), Expect = 4e-04
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 225 CPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTW---SKCPICYSSV 270
CPICL+ + T CGH+FC ACI+ Y +W CPIC +V
Sbjct: 3 CPICLHQASFPVETNCGHLFCGACIIAYWRYG--SWLGAISCPICRQTV 49
>gi|237858654 ring finger protein 170 isoform a [Homo sapiens]
Length = 258
Score = 44.7 bits (104), Expect = 4e-04
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 225 CPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTW---SKCPICYSSV 270
CPICL+ + T CGH+FC ACI+ Y +W CPIC +V
Sbjct: 87 CPICLHQASFPVETNCGHLFCGACIIAYWRYG--SWLGAISCPICRQTV 133
>gi|237858650 ring finger protein 170 isoform a [Homo sapiens]
Length = 258
Score = 44.7 bits (104), Expect = 4e-04
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 225 CPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTW---SKCPICYSSV 270
CPICL+ + T CGH+FC ACI+ Y +W CPIC +V
Sbjct: 87 CPICLHQASFPVETNCGHLFCGACIIAYWRYG--SWLGAISCPICRQTV 133
>gi|56605981 tripartite motif-containing 72 [Homo sapiens]
Length = 477
Score = 44.7 bits (104), Expect = 4e-04
Identities = 59/267 (22%), Positives = 104/267 (38%), Gaps = 38/267 (14%)
Query: 220 HEVPSCPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWS-KCPICYSSVHKKDLKS- 277
H+ SCP+CL A CGH FC AC+ + CP C + + L +
Sbjct: 9 HQELSCPLCLQLFDAPVTAECGHSFCRACLGRVAGEPAADGTVLCPCCQAPTRPQALSTN 68
Query: 278 ----------VVATESHQYVVGDTITMQLMKREKGVLVALPKSKWMNVDHPIHLGDEQHS 327
+ H D +++ ++++ ++ + S + H + E H+
Sbjct: 69 LQLARLVEGLAQVPQGHCEEHLDPLSI-YCEQDRALVCGVCASLGSHRGHRLLPAAEAHA 127
Query: 328 QYSKLLLASKEQVLHRVVLEEK--VALEQQLAEEKHTPES-------------CFIEAAI 372
+ L K Q+ + +EK LE QL E + T F+ A
Sbjct: 128 RLKTQLPQQKLQLQEACMRKEKSVAVLEHQLVEVEETVRQFRGAVGEQLGKMRVFLAALE 187
Query: 373 QELKTREEALSGLAG--SRREVTGVVAALEQLVLMAPLAKESVFQPRKGVLEYLSAFDEE 430
L E + G AG RRE+ + + LEQL M + +E +P+ E+L +
Sbjct: 188 GSLDCEAERVRGEAGVALRRELGSLNSYLEQLRQMEKVLEEVADKPQ---TEFLMKYCLV 244
Query: 431 TTEVCSLDTPSRP-----LALPLVEEE 452
T+ + + S P + LP++ ++
Sbjct: 245 TSRLQKILAESPPPARLDIQLPIISDD 271
>gi|5902054 ring finger protein 5 [Homo sapiens]
Length = 180
Score = 43.1 bits (100), Expect = 0.001
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 225 CPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKK 273
C ICL A ++ CGH++CW C+ +L + +CP+C + + ++
Sbjct: 27 CNICLETAREAVVSVCGHLYCWPCLHQWLETRPER-QECPVCKAGISRE 74
>gi|34482047 adaptor-related protein complex 3, beta 2 subunit [Homo
sapiens]
Length = 1082
Score = 42.7 bits (99), Expect = 0.001
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 24/148 (16%)
Query: 13 SDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGSKRYNRKRELSYP 72
SD + SG S+ S S+ + +S+S +GES +SD ++ + R E
Sbjct: 679 SDSEGESGPTESADSDPESESESDSKSSSESGSGESSSESDNEDQDEDEEKGRGSE---- 734
Query: 73 KNESFNNQSRRSSSQKSKTFNKMPPQRGGGSS--KLFSSSFNGGRRDEVAEAQRAEFSPA 130
+ QS +K+K K+P ++G SS + SS + + +E++ + PA
Sbjct: 735 -----SEQSEEDGKRKTK--KKVPERKGEASSSDEGSDSSSSSSESEMTSESEEEQLEPA 787
Query: 131 QFS-----------GPKKINLNHLLNFT 147
+S K+I+L L +FT
Sbjct: 788 SWSRKTPPSSKSAPATKEISLLDLEDFT 815
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 42.7 bits (99), Expect = 0.001
Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 10/121 (8%)
Query: 4 SSPNAAATASDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGSKRY 63
SS ++++++S +SGS+SSS SS S S+S+ +G S S SS S+
Sbjct: 577 SSSSSSSSSSSTSSSSGSSSSSGSSSSRSSS----SSSSSTSGSSSRDSSSSTSSSSESR 632
Query: 64 NRKRELSYPKNESFNNQSRRSSSQKSKTFNKMPPQRGGGSSKLFSSSFNGGRRDEVAEAQ 123
+R R + + + + RRS +K + + + +R SSK SS G +D+ + +
Sbjct: 633 SRSR----GRGHNRDRKHRRSVDRKRRDTSGL--ERSHKSSKGGSSRDTKGSKDKNSRSD 686
Query: 124 R 124
R
Sbjct: 687 R 687
Score = 35.0 bits (79), Expect = 0.28
Identities = 29/123 (23%), Positives = 57/123 (46%), Gaps = 5/123 (4%)
Query: 4 SSPNAAATASDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGSKRY 63
SS + ++++S + S+SSS+S+ S + S+S + ES+ +S G+ + +++
Sbjct: 589 SSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRD--SSSSTSSSSESRSRSRGRGHNRDRKH 646
Query: 64 NRKRELSYPKNESFNNQSRRSSSQKSKTFNKMPPQRGGGS--SKLFSSSFNGGRRDEVAE 121
R + ++ S +S +SS S K + S + S S G+R +E
Sbjct: 647 RRSVDRK-RRDTSGLERSHKSSKGGSSRDTKGSKDKNSRSDRKRSISESSRSGKRSSRSE 705
Query: 122 AQR 124
R
Sbjct: 706 RDR 708
Score = 32.3 bits (72), Expect = 1.8
Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 13/89 (14%)
Query: 17 KNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGSKRYNRKRELSYPKNES 76
+N S S S SS SS S+S+G + S S +SS S + +
Sbjct: 567 RNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSS-------------SST 613
Query: 77 FNNQSRRSSSQKSKTFNKMPPQRGGGSSK 105
+ SR SSS S + RG G ++
Sbjct: 614 SGSSSRDSSSSTSSSSESRSRSRGRGHNR 642
>gi|209529681 ring finger protein 185 isoform 1 [Homo sapiens]
Length = 192
Score = 42.7 bits (99), Expect = 0.001
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 225 CPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHK 272
C ICL A I+ CGH+FCW C+ +L + CP+C + + +
Sbjct: 39 CNICLDTAKDAVISLCGHLFCWPCLHQWLE-TRPNRQVCPVCKAGISR 85
>gi|31542783 ring finger protein 185 isoform 1 [Homo sapiens]
Length = 192
Score = 42.7 bits (99), Expect = 0.001
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 225 CPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHK 272
C ICL A I+ CGH+FCW C+ +L + CP+C + + +
Sbjct: 39 CNICLDTAKDAVISLCGHLFCWPCLHQWLE-TRPNRQVCPVCKAGISR 85
>gi|24797089 peroxisome biogenesis factor 10 isoform 1 [Homo
sapiens]
Length = 346
Score = 42.0 bits (97), Expect = 0.002
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 223 PSCPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPIC 266
P C +CL T CGH+FCW CI + S + ++CP+C
Sbjct: 291 PLCTLCLEERRHPTATPCGHLFCWECITAWCS----SKAECPLC 330
>gi|4505715 peroxisome biogenesis factor 10 isoform 2 [Homo sapiens]
Length = 326
Score = 42.0 bits (97), Expect = 0.002
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 223 PSCPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPIC 266
P C +CL T CGH+FCW CI + S + ++CP+C
Sbjct: 271 PLCTLCLEERRHPTATPCGHLFCWECITAWCS----SKAECPLC 310
>gi|89001107 dentin sialophosphoprotein preproprotein [Homo sapiens]
Length = 1301
Score = 42.0 bits (97), Expect = 0.002
Identities = 38/140 (27%), Positives = 55/140 (39%), Gaps = 11/140 (7%)
Query: 5 SPNAAATASDMDKNSGSNSS----------SASSGSSKGQQPPRSASAGPAGESKPKSDG 54
S N++ ++ D N SNSS S SS SS S+++ + ES SD
Sbjct: 873 SSNSSDSSDSSDSNESSNSSDSSDSSNSSDSDSSDSSNSSDSSDSSNSSDSSESSNSSDN 932
Query: 55 KNSSGSKRYNRKRELSYPKNES-FNNQSRRSSSQKSKTFNKMPPQRGGGSSKLFSSSFNG 113
NSS S + + S N S +N S S+S S N SS SS +
Sbjct: 933 SNSSDSSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSDSS 992
Query: 114 GRRDEVAEAQRAEFSPAQFS 133
D + ++ S + S
Sbjct: 993 DSSDSSDSSNSSDSSDSSDS 1012
Score = 41.2 bits (95), Expect = 0.004
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 2/116 (1%)
Query: 4 SSPNAAATASDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGSKRY 63
S+ + ++ +SD +S S+SSS SS SS S+++ + +S SD +S S
Sbjct: 660 SNSSNSSDSSDSSDSSDSSSSSDSSNSSDSSDSSDSSNSSESSDSSDSSDSDSSDSSDSS 719
Query: 64 NRKRELSYPKNESFNNQSRRS--SSQKSKTFNKMPPQRGGGSSKLFSSSFNGGRRD 117
N S N S ++ S S SS S + N SS SS + D
Sbjct: 720 NSNSSDSDSSNSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSD 775
Score = 40.8 bits (94), Expect = 0.005
Identities = 35/114 (30%), Positives = 49/114 (42%), Gaps = 8/114 (7%)
Query: 4 SSPNAAATASDMDKNSGSNS-------SSASSGSSKGQQPPRSASAGPAGESKPKSDGKN 56
SS ++ + +SD +S SNS SS SS SS S+ + + +S SD N
Sbjct: 704 SSDSSDSDSSDSSDSSNSNSSDSDSSNSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSN 763
Query: 57 SSGSKRYNRKRELSYPKNESFNNQSRRSSSQKSKTFNKMPPQRGGGSSKLFSSS 110
SS S + + S N S +N S +SS S + N SS SS
Sbjct: 764 SSDSSDSSDSSDSSDSSNSSDSNDS-SNSSDSSDSSNSSDSSNSSDSSDSSDSS 816
Score = 40.0 bits (92), Expect = 0.009
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Query: 4 SSPNAAATASDMDKNSGSNSSSASSGSSKGQQPPRSA--SAGPAGESKPKSDGKNSSGSK 61
SS ++ ++ SD +S S++SS SS SS S+ S G +S +SD NSS S
Sbjct: 809 SSDSSDSSDSDSSNSSDSSNSSDSSDSSNSSDSSDSSDSSDGSDSDSSNRSDSSNSSDSS 868
Query: 62 RYNRKRELSYPKNESFNNQSRRSSSQKSKTFNKMPPQRGGGSSKLFSSSFNGGRRDE 118
+ S + S +N+S SS + + +S S S N E
Sbjct: 869 DSSDSSNSSDSSDSSDSNESSNSSDSSDSSNSSDSDSSDSSNSSDSSDSSNSSDSSE 925
Score = 40.0 bits (92), Expect = 0.009
Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 2/121 (1%)
Query: 4 SSPNAAATASDMDKNSGSNS--SSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGSK 61
S + ++ +SD D + SNS SS SS SS + S+ + +S SD +SS S
Sbjct: 892 SDSSDSSNSSDSDSSDSSNSSDSSDSSNSSDSSESSNSSDNSNSSDSSNSSDSSDSSDSS 951
Query: 62 RYNRKRELSYPKNESFNNQSRRSSSQKSKTFNKMPPQRGGGSSKLFSSSFNGGRRDEVAE 121
+ S N S ++ S S S S + S S S N + ++
Sbjct: 952 NSSDSSNSSDSSNSSDSSDSNSSDSSDSSNSSDSSDSSDSSDSSDSSDSSNSSDSSDSSD 1011
Query: 122 A 122
+
Sbjct: 1012 S 1012
Score = 37.4 bits (85), Expect = 0.056
Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 4/130 (3%)
Query: 4 SSPNAAATASDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGSKRY 63
SS + ++ +SD D + SNSS +S S S+ + + +SK S S S
Sbjct: 582 SSDSDSSDSSDSDSSDSSNSSDSSDSSDSSD----SSDSSDSSDSKSDSSKSESDSSDSD 637
Query: 64 NRKRELSYPKNESFNNQSRRSSSQKSKTFNKMPPQRGGGSSKLFSSSFNGGRRDEVAEAQ 123
++ ++S +N SS S + + SS SS + D +
Sbjct: 638 SKSDSSDSNSSDSSDNSDSSDSSNSSNSSDSSDSSDSSDSSSSSDSSNSSDSSDSSDSSN 697
Query: 124 RAEFSPAQFS 133
+E S + S
Sbjct: 698 SSESSDSSDS 707
Score = 37.0 bits (84), Expect = 0.073
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 5/107 (4%)
Query: 4 SSPNAAATASDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGSKRY 63
S+ + ++ +SD + SNSS +S+ S S+++ + +S SDG +S S R
Sbjct: 804 SNSSDSSDSSDSSDSDSSNSSDSSNSSDSSD----SSNSSDSSDSSDSSDGSDSDSSNRS 859
Query: 64 NRKREL-SYPKNESFNNQSRRSSSQKSKTFNKMPPQRGGGSSKLFSS 109
+ S ++S N+ SS +++ N SS SS
Sbjct: 860 DSSNSSDSSDSSDSSNSSDSSDSSDSNESSNSSDSSDSSNSSDSDSS 906
Score = 37.0 bits (84), Expect = 0.073
Identities = 22/86 (25%), Positives = 40/86 (46%)
Query: 4 SSPNAAATASDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGSKRY 63
S + ++ +SD +S S+ SS SS SS S + + +S SD NSS S
Sbjct: 1196 SDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSNESSDSSDSSDSSDSSNSSDSSDS 1255
Query: 64 NRKRELSYPKNESFNNQSRRSSSQKS 89
+ + + N+ ++QS+ + +
Sbjct: 1256 SDSSDSTSDSNDESDSQSKSGNGNNN 1281
Score = 36.2 bits (82), Expect = 0.13
Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 4/133 (3%)
Query: 5 SPNAAATASDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGES----KPKSDGKNSSGS 60
S + +SD D + SNSS +S S S+S + +S SD +SS S
Sbjct: 542 SGKGKSDSSDSDSSDSSNSSDSSDSSDSDSSDSNSSSDSDSSDSDSSDSSDSDSSDSSNS 601
Query: 61 KRYNRKRELSYPKNESFNNQSRRSSSQKSKTFNKMPPQRGGGSSKLFSSSFNGGRRDEVA 120
+ + S + S ++ S+ SS+ + + S SS N D
Sbjct: 602 SDSSDSSDSSDSSDSSDSSDSKSDSSKSESDSSDSDSKSDSSDSNSSDSSDNSDSSDSSN 661
Query: 121 EAQRAEFSPAQFS 133
+ ++ S + S
Sbjct: 662 SSNSSDSSDSSDS 674
Score = 36.2 bits (82), Expect = 0.13
Identities = 30/115 (26%), Positives = 46/115 (40%), Gaps = 2/115 (1%)
Query: 5 SPNAAATASDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGSKRYN 64
S +++ ++ D + S+SS +S S +S S +SK S NSS S +
Sbjct: 595 SSDSSNSSDSSDSSDSSDSSDSSDSSDSKSDSSKSESDSSDSDSKSDSSDSNSSDSSDNS 654
Query: 65 RKRELSYPKNESFNNQSRRS--SSQKSKTFNKMPPQRGGGSSKLFSSSFNGGRRD 117
+ S N S ++ S S SS S + N SS SS + D
Sbjct: 655 DSSDSSNSSNSSDSSDSSDSSDSSSSSDSSNSSDSSDSSDSSNSSESSDSSDSSD 709
Score = 35.0 bits (79), Expect = 0.28
Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 4/113 (3%)
Query: 5 SPNAAATASDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGSKRYN 64
S +++ +++ D N SNSS +S S+ S+++ + +S SD +S+ S N
Sbjct: 773 SSDSSDSSNSSDSNDSSNSSDSSDSSNSSD----SSNSSDSSDSSDSSDSDSSNSSDSSN 828
Query: 65 RKRELSYPKNESFNNQSRRSSSQKSKTFNKMPPQRGGGSSKLFSSSFNGGRRD 117
+ ++ S S S + N+ SS SS + D
Sbjct: 829 SSDSSDSSNSSDSSDSSDSSDGSDSDSSNRSDSSNSSDSSDSSDSSNSSDSSD 881
Score = 31.6 bits (70), Expect = 3.1
Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 3/106 (2%)
Query: 5 SPNAAATASDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGSKRYN 64
S N +++ D NS + + + SKG + S S S +G N + N
Sbjct: 481 SDNNSSSRGDASYNSDESKDNGNGSDSKGAEDDDSDSTSDTNNSDSNGNGNNGNDD---N 537
Query: 65 RKRELSYPKNESFNNQSRRSSSQKSKTFNKMPPQRGGGSSKLFSSS 110
K + K++S ++ S SS+ + + SS SS
Sbjct: 538 DKSDSGKGKSDSSDSDSSDSSNSSDSSDSSDSDSSDSNSSSDSDSS 583
>gi|153791360 ret finger protein-like 4B [Homo sapiens]
Length = 263
Score = 42.0 bits (97), Expect = 0.002
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 224 SCPICLYPPTAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATES 283
SCP+CL + + C H+FC+ CI Y+ + + CP+C +D+ V A E
Sbjct: 10 SCPVCLDFFSCSISLSCTHVFCFDCIQRYILENHDFRAMCPLC------RDVVKVPALEE 63
Query: 284 HQYVVGDTITMQ 295
Q V +T Q
Sbjct: 64 WQVSVLTLMTKQ 75
>gi|121114298 cullin 4B isoform 1 [Homo sapiens]
Length = 913
Score = 41.2 bits (95), Expect = 0.004
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 15 MDKNSGS---NSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGSKRYNRKRELSY 71
M ++SGS N A++ G P ++A A E + +DG S+ +KR+L+
Sbjct: 2 MSQSSGSGDGNDDEATTSKDGGFSSPSPSAAAAAQEVRSATDGNTSTTPPTSAKKRKLNS 61
Query: 72 PKNESFNNQSRRSSSQKSKTFNKMPPQRGGGSSKLFSSSF 111
+ S N+ + R + + + PP + S+ +SSF
Sbjct: 62 SSSSSSNSSNEREDFDSTSSSSSTPPLQPRDSASPSTSSF 101
Score = 30.0 bits (66), Expect = 9.0
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 5 SPNAAATASDM-DKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGSKRY 63
SP+AAA A ++ G+ S++ + + K + S+S+ + + D +SS S
Sbjct: 28 SPSAAAAAQEVRSATDGNTSTTPPTSAKKRKLNSSSSSSSNSSNEREDFDSTSSSSSTPP 87
Query: 64 NRKRELSYPKNESF 77
+ R+ + P SF
Sbjct: 88 LQPRDSASPSTSSF 101
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
[Homo sapiens]
Length = 916
Score = 40.4 bits (93), Expect = 0.007
Identities = 52/226 (23%), Positives = 82/226 (36%), Gaps = 28/226 (12%)
Query: 587 KETLEMFSDDIEKRKRQRQKKAREERRRERRIEIEENKKQ------------GKYPEVHI 634
KE E + E + +A+EE++ E + E K++ K P
Sbjct: 561 KEEGEQEEGETEAEAEGEEAEAKEEKKVEEKSEEVATKEELVADAKVEKPEKAKSPVPKS 620
Query: 635 PLENLQQFPAFNSYTCSSDSALGPTSTEGHGALSISPLSRSPGSHADFLLTPLSPTASQG 694
P+E + P S P +G SP+ +SP P SP +G
Sbjct: 621 PVEEKGKSPVPKS----------PVEEKGK-----SPVPKSPVEEKGKSPVPKSPVEEKG 665
Query: 695 SPSFCVGSLEEDSPFPSFAQMLRVGKAKADVWPKTAPKKDENSLVPPAPVDSDGESDNSD 754
+EE + P + K+KA+V K K++E V AP + E
Sbjct: 666 KSPVSKSPVEEKAKSPVPKSPVEEAKSKAEV-GKGEQKEEEEKEVKEAPKEEKVEKKEEK 724
Query: 755 RVPVPSFQNSFSQAIEAAFMKLDTPATSDPLSEEKGGKKRKKQKQK 800
VP + + S E A ++ T S + EK K+ K Q+
Sbjct: 725 PKDVPEKKKAESPVKEEAVAEVVTITKSVKVHLEKETKEEGKPLQQ 770
>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2
[Homo sapiens]
Length = 540
Score = 40.4 bits (93), Expect = 0.007
Identities = 52/226 (23%), Positives = 82/226 (36%), Gaps = 28/226 (12%)
Query: 587 KETLEMFSDDIEKRKRQRQKKAREERRRERRIEIEENKKQ------------GKYPEVHI 634
KE E + E + +A+EE++ E + E K++ K P
Sbjct: 185 KEEGEQEEGETEAEAEGEEAEAKEEKKVEEKSEEVATKEELVADAKVEKPEKAKSPVPKS 244
Query: 635 PLENLQQFPAFNSYTCSSDSALGPTSTEGHGALSISPLSRSPGSHADFLLTPLSPTASQG 694
P+E + P S P +G SP+ +SP P SP +G
Sbjct: 245 PVEEKGKSPVPKS----------PVEEKGK-----SPVPKSPVEEKGKSPVPKSPVEEKG 289
Query: 695 SPSFCVGSLEEDSPFPSFAQMLRVGKAKADVWPKTAPKKDENSLVPPAPVDSDGESDNSD 754
+EE + P + K+KA+V K K++E V AP + E
Sbjct: 290 KSPVSKSPVEEKAKSPVPKSPVEEAKSKAEV-GKGEQKEEEEKEVKEAPKEEKVEKKEEK 348
Query: 755 RVPVPSFQNSFSQAIEAAFMKLDTPATSDPLSEEKGGKKRKKQKQK 800
VP + + S E A ++ T S + EK K+ K Q+
Sbjct: 349 PKDVPEKKKAESPVKEEAVAEVVTITKSVKVHLEKETKEEGKPLQQ 394
>gi|156104889 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 3 [Homo sapiens]
Length = 568
Score = 40.4 bits (93), Expect = 0.007
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 4 SSPNAAATASDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKP-KSDGKNSSGSKR 62
SS ++++++S +S S+SSS+SS SS S+S+ SKP K ++ +
Sbjct: 150 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTSFSKPHKLMKEHKEKPSK 209
Query: 63 YNRKRELSYPKNESFNNQSRRSSSQKSK 90
+R+ + ++ + +N+S + SS+K K
Sbjct: 210 DSREHKSAFKEPSRDHNKSSKESSKKPK 237
Score = 37.0 bits (84), Expect = 0.073
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 6 PNAAATASDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGSKRYNR 65
PN + S +S S+SSS+SS SS S+S+ + S S +SS S +++
Sbjct: 142 PNRSIHTSSSSSSSSSSSSSSSSSSSS------SSSSSSSSSSSSSSSSSSSSSSTSFSK 195
Query: 66 KRELSYPKNESFNNQSRRSSS---QKSKTFNK 94
+L E + SR S + S+ NK
Sbjct: 196 PHKLMKEHKEKPSKDSREHKSAFKEPSRDHNK 227
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 40.0 bits (92), Expect = 0.009
Identities = 35/137 (25%), Positives = 56/137 (40%), Gaps = 10/137 (7%)
Query: 4 SSPNAAATASDMDKNSGSNSSSASSGSSKGQ----QPPRSASAGPAGESKPKSDGKNSSG 59
SS + ++++S +SGS + G G R+ SA + + P S +SS
Sbjct: 2562 SSSSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRNCSAASSRAASPASSSSSSSS 2621
Query: 60 SKRYNRKRELSYPKNESFNNQSRRSSSQKSKTFNKMPPQRGGGSSKLFSSSFNGGRRDEV 119
S + S + S ++ S SSS S + + SS SSS + DE
Sbjct: 2622 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----SSSSSSSSSSSSSSSTTDED 2676
Query: 120 AEAQRA-EFSPAQFSGP 135
+ E +PA +GP
Sbjct: 2677 SSCSSDDEAAPAPTAGP 2693
Score = 38.9 bits (89), Expect = 0.019
Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 1/129 (0%)
Query: 5 SPNAAATASDMDKNSGSNSSSASSGSSKGQQPPRSASAGPAGESKPKSDGKNSSGSKRYN 64
SP+ A D + S S+SSS SSGSS S+ + GE + +G G+ N
Sbjct: 2543 SPDKAQAEQDGAEESESSSSS-SSGSSSSSSSSSSSGSETEGEEEGDKNGDGGCGTGGRN 2601
Query: 65 RKRELSYPKNESFNNQSRRSSSQKSKTFNKMPPQRGGGSSKLFSSSFNGGRRDEVAEAQR 124
S + + ++ S SSS S + + SS SSS + + +
Sbjct: 2602 CSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2661
Query: 125 AEFSPAQFS 133
+ S + S
Sbjct: 2662 SSSSSSSSS 2670
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.128 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,754,996
Number of Sequences: 37866
Number of extensions: 1749098
Number of successful extensions: 11427
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 286
Number of HSP's that attempted gapping in prelim test: 9314
Number of HSP's gapped (non-prelim): 2128
length of query: 811
length of database: 18,247,518
effective HSP length: 111
effective length of query: 700
effective length of database: 14,044,392
effective search space: 9831074400
effective search space used: 9831074400
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.