Search of human proteins with 33457320

Search of human proteins with 33457320

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|33457320 UBX domain containing 4 [Homo sapiens]
         (259 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|33457320 UBX domain containing 4 [Homo sapiens]                    518   e-147
gi|29568099 p47 protein isoform b [Homo sapiens]                      156   1e-38
gi|117938297 UBX domain protein 2B [Homo sapiens]                     149   3e-36
gi|20149635 p47 protein isoform a [Homo sapiens]                      147   7e-36
gi|33286434 p47 protein isoform c [Homo sapiens]                      147   7e-36
gi|116734689 socius isoform 3 [Homo sapiens]                           43   2e-04
gi|116734681 socius isoform 1 [Homo sapiens]                           43   2e-04
gi|116734679 socius isoform 2 [Homo sapiens]                           43   2e-04
gi|167466272 cytoskeleton associated protein 2-like [Homo sapiens]     38   0.008
gi|116174736 sentrin/SUMO-specific protease 7 isoform 2 [Homo sa...    31   1.2  
gi|116174746 sentrin/SUMO-specific protease 7 isoform 1 [Homo sa...    31   1.2  
gi|38679909 testis expressed sequence 2 [Homo sapiens]                 31   1.2  
gi|50233814 zinc finger CCCH-type containing 14 isoform 3 [Homo ...    30   2.1  
gi|231570186 zinc finger CCCH-type containing 14 isoform 6 [Homo...    30   2.1  
gi|231570121 zinc finger CCCH-type containing 14 isoform 5 [Homo...    30   2.1  
gi|50233812 zinc finger CCCH-type containing 14 isoform 2 [Homo ...    30   2.1  
gi|40804742 zinc finger CCCH-type containing 14 isoform 1 [Homo ...    30   2.1  
gi|154240686 FYVE, RhoGEF and PH domain containing 6 [Homo sapiens]    30   2.1  
gi|33239445 eukaryotic translation initiation factor 3, subunit ...    29   3.6  
gi|83367072 eukaryotic translation initiation factor 3, subunit ...    29   3.6  
gi|74048554 cancer susceptibility candidate 5 isoform 2 [Homo sa...    29   4.7  
gi|74048514 cancer susceptibility candidate 5 isoform 1 [Homo sa...    29   4.7  
gi|133778961 testis expressed 15 [Homo sapiens]                        29   4.7  
gi|55749932 desmin [Homo sapiens]                                      28   6.1  
gi|21914927 helicase, lymphoid-specific [Homo sapiens]                 28   6.1  
gi|114326552 MON2 homolog [Homo sapiens]                               28   6.1  
gi|20149643 zinc finger, HIT type 6 [Homo sapiens]                     28   6.1  
gi|239754624 PREDICTED: similar to hCG1998564 [Homo sapiens]           28   8.0  
gi|239743232 PREDICTED: hypothetical protein XP_002342775 [Homo ...    28   8.0  
gi|56550047 uveal autoantigen with coiled-coil domains and ankyr...    28   8.0  

>gi|33457320 UBX domain containing 4 [Homo sapiens]
          Length = 259

 Score =  518 bits (1333), Expect = e-147
 Identities = 259/259 (100%), Positives = 259/259 (100%)

Query: 1   MKDVDNLKSIKEEWVCETGSDNQPLGNNQQSNCEYFVDSLFEEAQKVSSKCVSPAEQKKQ 60
           MKDVDNLKSIKEEWVCETGSDNQPLGNNQQSNCEYFVDSLFEEAQKVSSKCVSPAEQKKQ
Sbjct: 1   MKDVDNLKSIKEEWVCETGSDNQPLGNNQQSNCEYFVDSLFEEAQKVSSKCVSPAEQKKQ 60

Query: 61  VDVNIKLWKNGFTVNDDFRSYSDGASQQFLNSIKKGELPSELQGIFDKEEVDVKVEDKKN 120
           VDVNIKLWKNGFTVNDDFRSYSDGASQQFLNSIKKGELPSELQGIFDKEEVDVKVEDKKN
Sbjct: 61  VDVNIKLWKNGFTVNDDFRSYSDGASQQFLNSIKKGELPSELQGIFDKEEVDVKVEDKKN 120

Query: 121 EICLSTKPVFQPFSGQGHRLGSATPKIVSKAKNIEVENKNNLSAVPLNNLEPITNIQIWL 180
           EICLSTKPVFQPFSGQGHRLGSATPKIVSKAKNIEVENKNNLSAVPLNNLEPITNIQIWL
Sbjct: 121 EICLSTKPVFQPFSGQGHRLGSATPKIVSKAKNIEVENKNNLSAVPLNNLEPITNIQIWL 180

Query: 181 ANGKRIVQKFNITHRVSHIKDFIEKYQGSQRSPPFSLATALPVLRLLDETLTLEEADLQN 240
           ANGKRIVQKFNITHRVSHIKDFIEKYQGSQRSPPFSLATALPVLRLLDETLTLEEADLQN
Sbjct: 181 ANGKRIVQKFNITHRVSHIKDFIEKYQGSQRSPPFSLATALPVLRLLDETLTLEEADLQN 240

Query: 241 AVIIQRLQKTASFRELSEH 259
           AVIIQRLQKTASFRELSEH
Sbjct: 241 AVIIQRLQKTASFRELSEH 259


>gi|29568099 p47 protein isoform b [Homo sapiens]
          Length = 339

 Score =  156 bits (395), Expect = 1e-38
 Identities = 96/238 (40%), Positives = 150/238 (63%), Gaps = 11/238 (4%)

Query: 20  SDNQPLGNNQQSNCEYFVDSLFEEAQKVSSKCV-----SPAEQKK-QVDVNIKLWKNGFT 73
           S  Q +G  ++ +    VD LF+ A++  +  V     SP E  K +V V +KLWK+GF+
Sbjct: 102 SGQQIVGPPRKKSPNELVDDLFKGAKEHGAVAVERVTKSPGETSKPRVHVVLKLWKSGFS 161

Query: 74  V-NDDFRSYSDGASQQFLNSIKKGELPSELQGIFDKEEVDVKVEDKKNEICLSTKPVFQP 132
           + N + RSY D ++ QFL SI++GE+P+EL+ +    +V++ +ED ++E  +  K  F+ 
Sbjct: 162 LDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKA 221

Query: 133 FSGQGHRLGSATPKIVSK---AKNIEVENKNNLSAVPLNNLEPITNIQIWLANGKRIVQK 189
           F+G+G +LGS  P+++S    A+  E E K + S++ ++  EP TNIQI LA+G R+VQK
Sbjct: 222 FTGEGQKLGSTAPQVLSTSSPAQQAENEAKAS-SSILIDESEPTTNIQIRLADGGRLVQK 280

Query: 190 FNITHRVSHIKDFIEKYQGSQRSPPFSLATALPVLRLLDETLTLEEADLQNAVIIQRL 247
           FN +HR+S I+ FI   + +  +  F L T  P   L DE+ TL+EA+L NAVI+QRL
Sbjct: 281 FNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANLLNAVIVQRL 338


>gi|117938297 UBX domain protein 2B [Homo sapiens]
          Length = 331

 Score =  149 bits (375), Expect = 3e-36
 Identities = 80/202 (39%), Positives = 133/202 (65%), Gaps = 2/202 (0%)

Query: 49  SKCVSPAEQKKQVDVNIKLWKNGFTVND-DFRSYSDGASQQFLNSIKKGELPSELQGIFD 107
           S+ +    Q + V + +KLW NGF+++D + R Y++  + QFL S+K+GE+P ELQ +  
Sbjct: 130 SEYIYGENQLQDVQILLKLWSNGFSLDDGELRPYNEPTNAQFLESVKRGEIPLELQRLVH 189

Query: 108 KEEVDVKVEDKKNEICLSTKPVFQPFSGQGHRLGSATPKIVSKAKNIEVENKNNLSAVPL 167
             +V++ +ED +++  +  +  F+ FSG+G +LGS TP+IVS   + E E+K+ L+AV L
Sbjct: 190 GGQVNLDMEDHQDQEYIKPRLRFKAFSGEGQKLGSLTPEIVSTPSSPEEEDKSILNAVVL 249

Query: 168 -NNLEPITNIQIWLANGKRIVQKFNITHRVSHIKDFIEKYQGSQRSPPFSLATALPVLRL 226
            ++  P T IQI LA+G R++Q+FN THR+  +++FI + +    +  F L T+ P   L
Sbjct: 250 IDDSVPTTKIQIRLADGSRLIQRFNSTHRILDVRNFIVQSRPEFAALDFILVTSFPNKEL 309

Query: 227 LDETLTLEEADLQNAVIIQRLQ 248
            DE+LTL EAD+ N V++Q+L+
Sbjct: 310 TDESLTLLEADILNTVLLQQLK 331


>gi|20149635 p47 protein isoform a [Homo sapiens]
          Length = 370

 Score =  147 bits (372), Expect = 7e-36
 Identities = 83/193 (43%), Positives = 129/193 (66%), Gaps = 5/193 (2%)

Query: 59  KQVDVNIKLWKNGFTV-NDDFRSYSDGASQQFLNSIKKGELPSELQGIFDKEEVDVKVED 117
           + V V +KLWK+GF++ N + RSY D ++ QFL SI++GE+P+EL+ +    +V++ +ED
Sbjct: 178 QDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMED 237

Query: 118 KKNEICLSTKPVFQPFSGQGHRLGSATPKIVSK---AKNIEVENKNNLSAVPLNNLEPIT 174
            ++E  +  K  F+ F+G+G +LGS  P+++S    A+  E E K + S++ ++  EP T
Sbjct: 238 HRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKAS-SSILIDESEPTT 296

Query: 175 NIQIWLANGKRIVQKFNITHRVSHIKDFIEKYQGSQRSPPFSLATALPVLRLLDETLTLE 234
           NIQI LA+G R+VQKFN +HR+S I+ FI   + +  +  F L T  P   L DE+ TL+
Sbjct: 297 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLK 356

Query: 235 EADLQNAVIIQRL 247
           EA+L NAVI+QRL
Sbjct: 357 EANLLNAVIVQRL 369


>gi|33286434 p47 protein isoform c [Homo sapiens]
          Length = 259

 Score =  147 bits (372), Expect = 7e-36
 Identities = 83/193 (43%), Positives = 129/193 (66%), Gaps = 5/193 (2%)

Query: 59  KQVDVNIKLWKNGFTV-NDDFRSYSDGASQQFLNSIKKGELPSELQGIFDKEEVDVKVED 117
           + V V +KLWK+GF++ N + RSY D ++ QFL SI++GE+P+EL+ +    +V++ +ED
Sbjct: 67  QDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMED 126

Query: 118 KKNEICLSTKPVFQPFSGQGHRLGSATPKIVSK---AKNIEVENKNNLSAVPLNNLEPIT 174
            ++E  +  K  F+ F+G+G +LGS  P+++S    A+  E E K + S++ ++  EP T
Sbjct: 127 HRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKAS-SSILIDESEPTT 185

Query: 175 NIQIWLANGKRIVQKFNITHRVSHIKDFIEKYQGSQRSPPFSLATALPVLRLLDETLTLE 234
           NIQI LA+G R+VQKFN +HR+S I+ FI   + +  +  F L T  P   L DE+ TL+
Sbjct: 186 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLK 245

Query: 235 EADLQNAVIIQRL 247
           EA+L NAVI+QRL
Sbjct: 246 EANLLNAVIVQRL 258


>gi|116734689 socius isoform 3 [Homo sapiens]
          Length = 400

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 4/80 (5%)

Query: 63  VNIKLWKNGFTVNDD-FRSYSDGASQQFLNSIKKGELPSELQGIFDKEEVDVKVEDKKNE 121
           + +KL++NG  + D  F+ + D ++Q+ L  I  G  PSELQ ++    V  KV D +N+
Sbjct: 113 IPLKLYRNGIMMFDGPFQPFYDPSTQRCLRDILDGFFPSELQRLY-PNGVPFKVSDLRNQ 171

Query: 122 ICLSTKPVFQPFSGQGHRLG 141
           + L  +    PF G+G  +G
Sbjct: 172 VYL--EDGLDPFPGEGRVVG 189


>gi|116734681 socius isoform 1 [Homo sapiens]
          Length = 487

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 4/80 (5%)

Query: 63  VNIKLWKNGFTVNDD-FRSYSDGASQQFLNSIKKGELPSELQGIFDKEEVDVKVEDKKNE 121
           + +KL++NG  + D  F+ + D ++Q+ L  I  G  PSELQ ++    V  KV D +N+
Sbjct: 200 IPLKLYRNGIMMFDGPFQPFYDPSTQRCLRDILDGFFPSELQRLY-PNGVPFKVSDLRNQ 258

Query: 122 ICLSTKPVFQPFSGQGHRLG 141
           + L  +    PF G+G  +G
Sbjct: 259 VYL--EDGLDPFPGEGRVVG 276


>gi|116734679 socius isoform 2 [Homo sapiens]
          Length = 520

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 4/80 (5%)

Query: 63  VNIKLWKNGFTVNDD-FRSYSDGASQQFLNSIKKGELPSELQGIFDKEEVDVKVEDKKNE 121
           + +KL++NG  + D  F+ + D ++Q+ L  I  G  PSELQ ++    V  KV D +N+
Sbjct: 233 IPLKLYRNGIMMFDGPFQPFYDPSTQRCLRDILDGFFPSELQRLY-PNGVPFKVSDLRNQ 291

Query: 122 ICLSTKPVFQPFSGQGHRLG 141
           + L  +    PF G+G  +G
Sbjct: 292 VYL--EDGLDPFPGEGRVVG 309


>gi|167466272 cytoskeleton associated protein 2-like [Homo sapiens]
          Length = 745

 Score = 38.1 bits (87), Expect = 0.008
 Identities = 53/254 (20%), Positives = 102/254 (40%), Gaps = 38/254 (14%)

Query: 10  IKEEWVCETGSDNQPLGNNQQSNCEYFVDSLFEEAQKVSS---KCVSPAEQKKQVDV--- 63
           + +++V ET S   P+ + Q S          + ++ V S   + +S  +  K+  V   
Sbjct: 241 VNKQFVGETQSRTFPVKSQQLSRGADLARPGVKPSRTVPSHFIRTLSKVQSSKKPVVKNI 300

Query: 64  -NIKLWKNGFTVNDDFRSYSDGASQQFLNSIKKGELPSELQGIFDKEEVDVKVEDKKNEI 122
            +IK+ ++ +   ++ +  S   ++Q +   K    PS LQG ++    ++K + K +++
Sbjct: 301 KDIKVNRSQYERPNETKIRSYPVTEQRVKHTKPRTYPSLLQGEYNNRHPNIKQDQKSSQV 360

Query: 123 CL--------STKPVFQPFSGQGHRLGSATPKIVSKAKNIEVENKNN------------- 161
           C+         +K + Q  +    R  SA P   S   N    NK+N             
Sbjct: 361 CIPQTSCVLQKSKAISQRPNLTVGRFNSAIPSTPSIRPNGTSGNKHNNNGFQQKAQTLDS 420

Query: 162 --LSAVP----LNNLEPITNIQIWLANGKR----IVQKFNITHRVSHIKDFIEKYQGSQR 211
               AVP    LN   P T   +   NG +    I +K     R   ++++ +    + +
Sbjct: 421 KLKKAVPQNHFLNKTAPKTQADVTTVNGTQTNPNIKKKATAEDRRKQLEEWQKSKGKTYK 480

Query: 212 SPPFSLATALPVLR 225
            PP  L T   V++
Sbjct: 481 RPPMELKTKRKVIK 494


>gi|116174736 sentrin/SUMO-specific protease 7 isoform 2 [Homo
           sapiens]
          Length = 985

 Score = 30.8 bits (68), Expect = 1.2
 Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 8/127 (6%)

Query: 42  EEAQKVSSKCVSPAEQKKQVDVNIKLWKNGFTVNDDFRSYSDGASQQFL--NSIKKGELP 99
           E+   +S++   P+E   Q D  +           DF   S   SQ+    N+ K     
Sbjct: 265 EDDSTISTEFEKPSENYHQ-DPKLPEEITTKPTKSDFTKLSSLNSQELTLSNATKSASAG 323

Query: 100 SELQGIFDKEEVDVK-----VEDKKNEICLSTKPVFQPFSGQGHRLGSATPKIVSKAKNI 154
           S  + + +   +D+      VE  +NE+    KP+ +  +     L SA P +VS  +  
Sbjct: 324 STTETVENSNSIDIVGISSLVEKDENELNTIEKPILRGHNEGNQSLISAEPIVVSSDEEG 383

Query: 155 EVENKNN 161
            VE+K++
Sbjct: 384 PVEHKSS 390


>gi|116174746 sentrin/SUMO-specific protease 7 isoform 1 [Homo
           sapiens]
          Length = 1050

 Score = 30.8 bits (68), Expect = 1.2
 Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 8/127 (6%)

Query: 42  EEAQKVSSKCVSPAEQKKQVDVNIKLWKNGFTVNDDFRSYSDGASQQFL--NSIKKGELP 99
           E+   +S++   P+E   Q D  +           DF   S   SQ+    N+ K     
Sbjct: 330 EDDSTISTEFEKPSENYHQ-DPKLPEEITTKPTKSDFTKLSSLNSQELTLSNATKSASAG 388

Query: 100 SELQGIFDKEEVDVK-----VEDKKNEICLSTKPVFQPFSGQGHRLGSATPKIVSKAKNI 154
           S  + + +   +D+      VE  +NE+    KP+ +  +     L SA P +VS  +  
Sbjct: 389 STTETVENSNSIDIVGISSLVEKDENELNTIEKPILRGHNEGNQSLISAEPIVVSSDEEG 448

Query: 155 EVENKNN 161
            VE+K++
Sbjct: 449 PVEHKSS 455


>gi|38679909 testis expressed sequence 2 [Homo sapiens]
          Length = 1134

 Score = 30.8 bits (68), Expect = 1.2
 Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 21/133 (15%)

Query: 37  VDSLFEEAQKVSSKCVS--PAEQKKQVDVNIKLWKNGFTVNDDFRSYSDGASQQFLNSIK 94
           V SL  +  +  S  VS  P + K    +N+ L+K  FT   +    S  A    L S  
Sbjct: 218 VKSLSTDTSRQESDTVSYKPPDSK----LNLHLFKQ-FTQPRNTGGDSKTAPSSPLTS-- 270

Query: 95  KGELPSELQGIFDKEEVDVKVEDKKNEICLSTKPVFQPFSGQ----GHRLGSATPKIVSK 150
               PS+ +  F   E++ K+ED K  +   ++ +++PF       G   GS  PK +S 
Sbjct: 271 ----PSDTRSFFKVPEMEAKIEDTKRRL---SEVIYEPFQLLSKIIGEESGSHRPKALSS 323

Query: 151 AKNIEVENKNNLS 163
           + + E+ N ++L+
Sbjct: 324 SAS-ELSNLSSLN 335


>gi|50233814 zinc finger CCCH-type containing 14 isoform 3 [Homo
           sapiens]
          Length = 571

 Score = 30.0 bits (66), Expect = 2.1
 Identities = 29/145 (20%), Positives = 57/145 (39%), Gaps = 3/145 (2%)

Query: 4   VDNLKSIKEEWVCETGSDNQPLGNNQQSNCEYFVDSLFEEAQKVSSKCVSPAEQKKQVDV 63
           +D L+S+  E      SD     +N  SN   F        +        P+ + ++ D 
Sbjct: 36  LDKLRSVTTEPSSLKSSDTNIFDSNVPSNKSNFSRGDERRHEAAVPPLAIPSARPEKRDS 95

Query: 64  NIKLWKNGFTVNDDFRSYSDGASQQFLNSIKKGELPSELQGIFD-KEEVDVKVEDKKNEI 122
            +          +  ++Y DGA+ + ++++K    P+  + + D K E D  +++  N +
Sbjct: 96  RVSTSSQESKTTNVRQTYDDGAATRLMSTVKPLREPAPSEDVIDIKPEPDDLIDEDLNFV 155

Query: 123 CLSTKPVFQPFSGQGHRLGSATPKI 147
                P+ Q         GS+ P I
Sbjct: 156 --QENPLSQKKPTVTLTYGSSRPSI 178


>gi|231570186 zinc finger CCCH-type containing 14 isoform 6 [Homo
           sapiens]
          Length = 730

 Score = 30.0 bits (66), Expect = 2.1
 Identities = 29/145 (20%), Positives = 57/145 (39%), Gaps = 3/145 (2%)

Query: 4   VDNLKSIKEEWVCETGSDNQPLGNNQQSNCEYFVDSLFEEAQKVSSKCVSPAEQKKQVDV 63
           +D L+S+  E      SD     +N  SN   F        +        P+ + ++ D 
Sbjct: 70  LDKLRSVTTEPSSLKSSDTNIFDSNVPSNKSNFSRGDERRHEAAVPPLAIPSARPEKRDS 129

Query: 64  NIKLWKNGFTVNDDFRSYSDGASQQFLNSIKKGELPSELQGIFD-KEEVDVKVEDKKNEI 122
            +          +  ++Y DGA+ + ++++K    P+  + + D K E D  +++  N +
Sbjct: 130 RVSTSSQESKTTNVRQTYDDGAATRLMSTVKPLREPAPSEDVIDIKPEPDDLIDEDLNFV 189

Query: 123 CLSTKPVFQPFSGQGHRLGSATPKI 147
                P+ Q         GS+ P I
Sbjct: 190 --QENPLSQKKPTVTLTYGSSRPSI 212


>gi|231570121 zinc finger CCCH-type containing 14 isoform 5 [Homo
           sapiens]
          Length = 735

 Score = 30.0 bits (66), Expect = 2.1
 Identities = 29/145 (20%), Positives = 57/145 (39%), Gaps = 3/145 (2%)

Query: 4   VDNLKSIKEEWVCETGSDNQPLGNNQQSNCEYFVDSLFEEAQKVSSKCVSPAEQKKQVDV 63
           +D L+S+  E      SD     +N  SN   F        +        P+ + ++ D 
Sbjct: 70  LDKLRSVTTEPSSLKSSDTNIFDSNVPSNKSNFSRGDERRHEAAVPPLAIPSARPEKRDS 129

Query: 64  NIKLWKNGFTVNDDFRSYSDGASQQFLNSIKKGELPSELQGIFD-KEEVDVKVEDKKNEI 122
            +          +  ++Y DGA+ + ++++K    P+  + + D K E D  +++  N +
Sbjct: 130 RVSTSSQESKTTNVRQTYDDGAATRLMSTVKPLREPAPSEDVIDIKPEPDDLIDEDLNFV 189

Query: 123 CLSTKPVFQPFSGQGHRLGSATPKI 147
                P+ Q         GS+ P I
Sbjct: 190 --QENPLSQKKPTVTLTYGSSRPSI 212


>gi|50233812 zinc finger CCCH-type containing 14 isoform 2 [Homo
           sapiens]
          Length = 579

 Score = 30.0 bits (66), Expect = 2.1
 Identities = 29/145 (20%), Positives = 57/145 (39%), Gaps = 3/145 (2%)

Query: 4   VDNLKSIKEEWVCETGSDNQPLGNNQQSNCEYFVDSLFEEAQKVSSKCVSPAEQKKQVDV 63
           +D L+S+  E      SD     +N  SN   F        +        P+ + ++ D 
Sbjct: 70  LDKLRSVTTEPSSLKSSDTNIFDSNVPSNKSNFSRGDERRHEAAVPPLAIPSARPEKRDS 129

Query: 64  NIKLWKNGFTVNDDFRSYSDGASQQFLNSIKKGELPSELQGIFD-KEEVDVKVEDKKNEI 122
            +          +  ++Y DGA+ + ++++K    P+  + + D K E D  +++  N +
Sbjct: 130 RVSTSSQESKTTNVRQTYDDGAATRLMSTVKPLREPAPSEDVIDIKPEPDDLIDEDLNFV 189

Query: 123 CLSTKPVFQPFSGQGHRLGSATPKI 147
                P+ Q         GS+ P I
Sbjct: 190 --QENPLSQKKPTVTLTYGSSRPSI 212


>gi|40804742 zinc finger CCCH-type containing 14 isoform 1 [Homo
           sapiens]
          Length = 736

 Score = 30.0 bits (66), Expect = 2.1
 Identities = 29/145 (20%), Positives = 57/145 (39%), Gaps = 3/145 (2%)

Query: 4   VDNLKSIKEEWVCETGSDNQPLGNNQQSNCEYFVDSLFEEAQKVSSKCVSPAEQKKQVDV 63
           +D L+S+  E      SD     +N  SN   F        +        P+ + ++ D 
Sbjct: 70  LDKLRSVTTEPSSLKSSDTNIFDSNVPSNKSNFSRGDERRHEAAVPPLAIPSARPEKRDS 129

Query: 64  NIKLWKNGFTVNDDFRSYSDGASQQFLNSIKKGELPSELQGIFD-KEEVDVKVEDKKNEI 122
            +          +  ++Y DGA+ + ++++K    P+  + + D K E D  +++  N +
Sbjct: 130 RVSTSSQESKTTNVRQTYDDGAATRLMSTVKPLREPAPSEDVIDIKPEPDDLIDEDLNFV 189

Query: 123 CLSTKPVFQPFSGQGHRLGSATPKI 147
                P+ Q         GS+ P I
Sbjct: 190 --QENPLSQKKPTVTLTYGSSRPSI 212


>gi|154240686 FYVE, RhoGEF and PH domain containing 6 [Homo sapiens]
          Length = 1430

 Score = 30.0 bits (66), Expect = 2.1
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 82  SDGASQQFLNSIKKGELPSELQGIFD-KEEVDVKVEDKKNE 121
           S GASQ+  N +  G+LPS+ + I +  +E DV  E  K E
Sbjct: 814 SSGASQEEQNDLGLGDLPSDEEEIINSSDEDDVSSESSKGE 854


>gi|33239445 eukaryotic translation initiation factor 3, subunit 9
           eta, 116kDa [Homo sapiens]
          Length = 814

 Score = 29.3 bits (64), Expect = 3.6
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 46  KVSSKCVSPAEQKKQVDVNIKLWKNGFTVNDDFRSYSDGASQQFLNSIKKGELPSELQGI 105
           K  SK     ++  Q   + +L +   T+ +DFR Y   A + ++   K   L  EL+G 
Sbjct: 725 KKYSKIFEQKDRLSQSKASKELVERRRTMMEDFRKYRKMAQELYMEQ-KNERL--ELRGG 781

Query: 106 FDKEEVDVKVEDKKNE 121
            D +E+D  V+D + E
Sbjct: 782 VDTDELDSNVDDWEEE 797


>gi|83367072 eukaryotic translation initiation factor 3, subunit 9
           eta, 116kDa [Homo sapiens]
          Length = 814

 Score = 29.3 bits (64), Expect = 3.6
 Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 46  KVSSKCVSPAEQKKQVDVNIKLWKNGFTVNDDFRSYSDGASQQFLNSIKKGELPSELQGI 105
           K  SK     ++  Q   + +L +   T+ +DFR Y   A + ++   K   L  EL+G 
Sbjct: 725 KKYSKIFEQKDRLSQSKASKELVERRRTMMEDFRKYRKMAQELYMEQ-KNERL--ELRGG 781

Query: 106 FDKEEVDVKVEDKKNE 121
            D +E+D  V+D + E
Sbjct: 782 VDTDELDSNVDDWEEE 797


>gi|74048554 cancer susceptibility candidate 5 isoform 2 [Homo
            sapiens]
          Length = 2316

 Score = 28.9 bits (63), Expect = 4.7
 Identities = 45/174 (25%), Positives = 69/174 (39%), Gaps = 25/174 (14%)

Query: 34   EYFVDSLFEEAQKVSSKC-------VSPAEQKKQVDVNIKLWKNGFTVNDDFRSYSDGAS 86
            EY+++S   E Q +S+ C       V     K Q+D  I L K+   + D        A+
Sbjct: 1348 EYYLES---EGQPLSAPCPLLEKEEVIQTSTKGQLDCVITLHKDQDLIKDPRNLL---AN 1401

Query: 87   QQFLNSIKKGELPS----ELQGIFDKEEVDVKVEDKKNEICLSTKPVFQ----PFSGQGH 138
            Q  + S   GE+       +     K+++ V V+D    I +  +P F     P   +G 
Sbjct: 1402 QTLVYSQDLGEMTKLNSKRVSFKLPKDQMKVYVDD----IYVIPQPHFSTDQPPLPKKGQ 1457

Query: 139  RLGSATPKIVSKAKNIEVENKNNLSAVPLNNLEPITNIQIWLANGKRIVQKFNI 192
               +    I+SKA N  +    N SA    N   I N + W A   +   K NI
Sbjct: 1458 SSINKEEVILSKAGNKSLNIIENSSAPICENKPKILNSEEWFAAACKKELKENI 1511


>gi|74048514 cancer susceptibility candidate 5 isoform 1 [Homo
            sapiens]
          Length = 2342

 Score = 28.9 bits (63), Expect = 4.7
 Identities = 45/174 (25%), Positives = 69/174 (39%), Gaps = 25/174 (14%)

Query: 34   EYFVDSLFEEAQKVSSKC-------VSPAEQKKQVDVNIKLWKNGFTVNDDFRSYSDGAS 86
            EY+++S   E Q +S+ C       V     K Q+D  I L K+   + D        A+
Sbjct: 1374 EYYLES---EGQPLSAPCPLLEKEEVIQTSTKGQLDCVITLHKDQDLIKDPRNLL---AN 1427

Query: 87   QQFLNSIKKGELPS----ELQGIFDKEEVDVKVEDKKNEICLSTKPVFQ----PFSGQGH 138
            Q  + S   GE+       +     K+++ V V+D    I +  +P F     P   +G 
Sbjct: 1428 QTLVYSQDLGEMTKLNSKRVSFKLPKDQMKVYVDD----IYVIPQPHFSTDQPPLPKKGQ 1483

Query: 139  RLGSATPKIVSKAKNIEVENKNNLSAVPLNNLEPITNIQIWLANGKRIVQKFNI 192
               +    I+SKA N  +    N SA    N   I N + W A   +   K NI
Sbjct: 1484 SSINKEEVILSKAGNKSLNIIENSSAPICENKPKILNSEEWFAAACKKELKENI 1537


>gi|133778961 testis expressed 15 [Homo sapiens]
          Length = 2789

 Score = 28.9 bits (63), Expect = 4.7
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 11/106 (10%)

Query: 22  NQPLGNNQQSNCEYFVDSLFEEAQKVSSKCVSPA-EQKKQVDVNIKLWKNG----FTVND 76
           +QP G N    CE  VD++ +E+  VS+  +S + +  +  DVN           FT   
Sbjct: 824 SQPFGENADYPCEDKVDNIRQESGPVSNSEISLSFDLSRNTDVNHTSENQNSESLFTEPS 883

Query: 77  DFRSYSDGASQQFLNSIKKGELPSELQGIFDKEEVDVKVEDKKNEI 122
           +  +  DG+   F  S       ++     +K+EV+ ++  +K  I
Sbjct: 884 NVTTIDDGSRCFFTKS------KTDYNDTKNKKEVESRISKRKLHI 923


>gi|55749932 desmin [Homo sapiens]
          Length = 470

 Score = 28.5 bits (62), Expect = 6.1
 Identities = 26/142 (18%), Positives = 64/142 (45%), Gaps = 9/142 (6%)

Query: 28  NQQSNCEYFVDSLFEEAQKVSSKCVSPAEQKKQVDVNIKLWKNGF------TVNDDFRSY 81
           NQ++  +   D+L ++ Q++ +K     + K++ + N+  ++          ++ + R  
Sbjct: 171 NQRARVDVERDNLLDDLQRLKAKLQEEIQLKEEAENNLAAFRADVDAATLARIDLERRIE 230

Query: 82  SDGASQQFLNSIKKGELPSELQGIFDKEEVDVKVEDKKNEICLSTKPVFQPFSG-QGHRL 140
           S      FL  + + E+  ELQ    +++V V+++  K ++  + + +   +       +
Sbjct: 231 SLNEEIAFLKKVHEEEI-RELQAQLQEQQVQVEMDMSKPDLTAALRDIRAQYETIAAKNI 289

Query: 141 GSATPKIVSKAKNI-EVENKNN 161
             A     SK  ++ +  NKNN
Sbjct: 290 SEAEEWYKSKVSDLTQAANKNN 311


>gi|21914927 helicase, lymphoid-specific [Homo sapiens]
          Length = 838

 Score = 28.5 bits (62), Expect = 6.1
 Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 6/120 (5%)

Query: 136 QGHRLGSATPKIVSKAKNIEVENKNNLSAVPL-NNLEPITNIQIWLA-----NGKRIVQK 189
           +GHR+ +   +++ + K    +NK  L+  PL NNL  + ++  +L      + K     
Sbjct: 355 EGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESW 414

Query: 190 FNITHRVSHIKDFIEKYQGSQRSPPFSLATALPVLRLLDETLTLEEADLQNAVIIQRLQK 249
           F+IT      +D I K +               +LR L   + LE    +  V+   L K
Sbjct: 415 FDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSK 474


>gi|114326552 MON2 homolog [Homo sapiens]
          Length = 1717

 Score = 28.5 bits (62), Expect = 6.1
 Identities = 17/95 (17%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 36   FVDSLFEEAQKVSSKCVSPAEQKKQVDVNIKLWKNGFTVNDDFRSYSDGASQQFLNSI-- 93
            F D LF ++    +  +   ++ + +DV +        ++++   Y++   ++F+  I  
Sbjct: 1497 FEDFLFTKSIPPDNLSIQEFQRNENIDVEVVQ-----LISNEILPYANFIPKEFVGQIMT 1551

Query: 94   --KKGELPSELQGIFDKEEVDVKVEDKKNEICLST 126
               KG + S+    F + E+D+++ ++ +++C  T
Sbjct: 1552 MLNKGSIHSQSSS-FTEAEIDIRLREEFSKMCFET 1585


>gi|20149643 zinc finger, HIT type 6 [Homo sapiens]
          Length = 470

 Score = 28.5 bits (62), Expect = 6.1
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 11/72 (15%)

Query: 63  VNIKLWKNGFTVNDDFRSYSDGASQQFLNSIKKGELPSELQGIFDKEEVDVKVEDKK--N 120
           +N+KL  NGFT   +  ++ D   QQF   +K  + P         E ++ +V D K  N
Sbjct: 318 INLKLLPNGFTKRKENSTFFDKKKQQFCWHVKL-QFPQS-----QAEYIEKRVPDDKTIN 371

Query: 121 EICLSTKPVFQP 132
           EI    KP   P
Sbjct: 372 EI---LKPYIDP 380


>gi|239754624 PREDICTED: similar to hCG1998564 [Homo sapiens]
          Length = 526

 Score = 28.1 bits (61), Expect = 8.0
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 8   KSIKEEWVCETGSDNQPLGNNQQSNCEYFVDSLFEEAQKVSSKCV--SPAEQKKQVDV 63
           K I+EE +C   S + PL  +++S  E   D+   + Q  +S+    S  ++K++V +
Sbjct: 316 KKIREEELCHHSSSSTPLAADRESQGEKAADTTPRKKQNSNSQSTPGSSGQRKRKVQL 373


>gi|239743232 PREDICTED: hypothetical protein XP_002342775 [Homo
          sapiens]
          Length = 834

 Score = 28.1 bits (61), Expect = 8.0
 Identities = 16/58 (27%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 8  KSIKEEWVCETGSDNQPLGNNQQSNCEYFVDSLFEEAQKVSSKCV--SPAEQKKQVDV 63
          K I+EE +C   S + PL  +++S  E   D+   + Q  +S+    S  ++K++V +
Sbjct: 37 KKIREEEMCHHSSSSTPLAADKESQGEKAADTTPRKKQNSNSQSTPGSSGQRKRKVQL 94


>gi|56550047 uveal autoantigen with coiled-coil domains and ankyrin
            repeats isoform 2 [Homo sapiens]
          Length = 1403

 Score = 28.1 bits (61), Expect = 8.0
 Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 38   DSLFEEAQKVSSKCVSPAEQKKQVDVNIKLWKNGFTVNDDFR 79
            D L E+ QK S   VS  E KK    N KL K  FT+  D R
Sbjct: 994  DQLSEQTQKYS---VSEEEVKKNKQENDKLKKEIFTLQKDLR 1032


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.130    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,640,423
Number of Sequences: 37866
Number of extensions: 411648
Number of successful extensions: 903
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 887
Number of HSP's gapped (non-prelim): 36
length of query: 259
length of database: 18,247,518
effective HSP length: 100
effective length of query: 159
effective length of database: 14,460,918
effective search space: 2299285962
effective search space used: 2299285962
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.