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Search of human proteins with 33286434
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|33286434 p47 protein isoform c [Homo sapiens]
(259 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|33286434 p47 protein isoform c [Homo sapiens] 508 e-144
gi|20149635 p47 protein isoform a [Homo sapiens] 484 e-137
gi|29568099 p47 protein isoform b [Homo sapiens] 405 e-113
gi|117938297 UBX domain protein 2B [Homo sapiens] 287 7e-78
gi|33457320 UBX domain containing 4 [Homo sapiens] 147 7e-36
gi|116734689 socius isoform 3 [Homo sapiens] 42 7e-04
gi|116734681 socius isoform 1 [Homo sapiens] 42 7e-04
gi|116734679 socius isoform 2 [Homo sapiens] 42 7e-04
gi|13129078 alveolar soft part sarcoma chromosome region, candid... 41 0.001
gi|29725609 epidermal growth factor receptor isoform a precursor... 32 0.42
gi|122937512 myosin VIIB [Homo sapiens] 31 1.2
gi|17978479 vacuolar protein sorting 16 isoform 1 [Homo sapiens] 30 2.1
gi|74319833 ubiquitin specific protease 9, Y-linked [Homo sapiens] 30 2.1
gi|133925809 inter-alpha (globulin) inhibitor H3 preproprotein [... 30 2.1
gi|17978481 vacuolar protein sorting 16 isoform 3 [Homo sapiens] 30 2.7
gi|139394579 zinc finger and BTB domain containing 40 [Homo sapi... 30 2.7
gi|139394556 zinc finger and BTB domain containing 40 [Homo sapi... 30 2.7
gi|21361517 UBX domain protein 1 [Homo sapiens] 30 2.7
gi|94536798 high mobility group AT-hook 1-like 4 [Homo sapiens] 29 3.6
gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f... 29 4.7
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 29 4.7
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 29 4.7
gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b ... 29 4.7
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ... 29 4.7
gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c ... 29 4.7
gi|148612882 cat eye syndrome chromosome region, candidate 2 [Ho... 28 6.1
gi|90819237 myeloid/lymphoid or mixed-lineage leukemia (trithora... 28 8.0
gi|90819233 myeloid/lymphoid or mixed-lineage leukemia (trithora... 28 8.0
gi|90819231 myeloid/lymphoid or mixed-lineage leukemia (trithora... 28 8.0
gi|32454739 tripartite motif-containing 3 [Homo sapiens] 28 8.0
>gi|33286434 p47 protein isoform c [Homo sapiens]
Length = 259
Score = 508 bits (1307), Expect = e-144
Identities = 259/259 (100%), Positives = 259/259 (100%)
Query: 1 MTKMKMRRKRKARGAKEHGAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEEESAYVAGE 60
MTKMKMRRKRKARGAKEHGAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEEESAYVAGE
Sbjct: 1 MTKMKMRRKRKARGAKEHGAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEEESAYVAGE 60
Query: 61 KRQHSSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQV 120
KRQHSSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQV
Sbjct: 61 KRQHSSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQV 120
Query: 121 NLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDE 180
NLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDE
Sbjct: 121 NLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDE 180
Query: 181 SEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADE 240
SEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADE
Sbjct: 181 SEPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADE 240
Query: 241 SQTLKEANLLNAVIVQRLT 259
SQTLKEANLLNAVIVQRLT
Sbjct: 241 SQTLKEANLLNAVIVQRLT 259
>gi|20149635 p47 protein isoform a [Homo sapiens]
Length = 370
Score = 484 bits (1245), Expect = e-137
Identities = 246/247 (99%), Positives = 247/247 (100%)
Query: 13 RGAKEHGAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEEESAYVAGEKRQHSSQDVHVV 72
+GAKEHGAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEEESAYVAGEKRQHSSQDVHVV
Sbjct: 124 KGAKEHGAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEEESAYVAGEKRQHSSQDVHVV 183
Query: 73 LKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDF 132
LKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDF
Sbjct: 184 LKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDF 243
Query: 133 VKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQIRLA 192
VKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQIRLA
Sbjct: 244 VKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQIRLA 303
Query: 193 DGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANLLNA 252
DGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANLLNA
Sbjct: 304 DGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANLLNA 363
Query: 253 VIVQRLT 259
VIVQRLT
Sbjct: 364 VIVQRLT 370
>gi|29568099 p47 protein isoform b [Homo sapiens]
Length = 339
Score = 405 bits (1040), Expect = e-113
Identities = 215/247 (87%), Positives = 216/247 (87%), Gaps = 31/247 (12%)
Query: 13 RGAKEHGAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEEESAYVAGEKRQHSSQDVHVV 72
+GAKEHGAVAVERVTKSPGETSKPR VHVV
Sbjct: 124 KGAKEHGAVAVERVTKSPGETSKPR-------------------------------VHVV 152
Query: 73 LKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDF 132
LKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDF
Sbjct: 153 LKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDF 212
Query: 133 VKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQIRLA 192
VKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQIRLA
Sbjct: 213 VKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQIRLA 272
Query: 193 DGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANLLNA 252
DGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANLLNA
Sbjct: 273 DGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANLLNA 332
Query: 253 VIVQRLT 259
VIVQRLT
Sbjct: 333 VIVQRLT 339
>gi|117938297 UBX domain protein 2B [Homo sapiens]
Length = 331
Score = 287 bits (734), Expect = 7e-78
Identities = 140/244 (57%), Positives = 192/244 (78%), Gaps = 5/244 (2%)
Query: 15 AKEHGAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEEESAYVAGEKRQHSSQDVHVVLK 74
A+EHGAV + T++ G+ K + F GGGYRLG++ + S Y+ GE + QDV ++LK
Sbjct: 92 AREHGAVPLNEATRASGD-DKSKSFTGGGYRLGSSFCKRSEYIYGENQL---QDVQILLK 147
Query: 75 LWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVK 134
LW +GFSLD+GELR Y +P+NAQFLES++RGE+P EL+RL HGGQVNLDMEDH+D++++K
Sbjct: 148 LWSNGFSLDDGELRPYNEPTNAQFLESVKRGEIPLELQRLVHGGQVNLDMEDHQDQEYIK 207
Query: 135 PKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQIRLADG 194
P+ FKAF+GEGQKLGS P+++ST S ++ E+++ ++ +LID+S PTT IQIRLADG
Sbjct: 208 PRLRFKAFSGEGQKLGSLTPEIVSTPSSPEE-EDKSILNAVVLIDDSVPTTKIQIRLADG 266
Query: 195 GRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANLLNAVI 254
RL+Q+FN +HRI D+R FIV +RP AA FIL+T+FPNKEL DES TL EA++LN V+
Sbjct: 267 SRLIQRFNSTHRILDVRNFIVQSRPEFAALDFILVTSFPNKELTDESLTLLEADILNTVL 326
Query: 255 VQRL 258
+Q+L
Sbjct: 327 LQQL 330
>gi|33457320 UBX domain containing 4 [Homo sapiens]
Length = 259
Score = 147 bits (372), Expect = 7e-36
Identities = 83/193 (43%), Positives = 129/193 (66%), Gaps = 5/193 (2%)
Query: 67 QDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMED 126
+ V V +KLWK+GF++ N + RSY D ++ QFL SI++GE+P+EL+ + +V++ +ED
Sbjct: 59 KQVDVNIKLWKNGFTV-NDDFRSYSDGASQQFLNSIKKGELPSELQGIFDKEEVDVKVED 117
Query: 127 HRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKAS-SSILIDESEPTT 185
++E + K F+ F+G+G +LGS P+++S A+ E E K + S++ ++ EP T
Sbjct: 118 KKNEICLSTKPVFQPFSGQGHRLGSATPKIVSK---AKNIEVENKNNLSAVPLNNLEPIT 174
Query: 186 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLK 245
NIQI LA+G R+VQKFN +HR+S I+ FI + + + F L T P L DE+ TL+
Sbjct: 175 NIQIWLANGKRIVQKFNITHRVSHIKDFIEKYQGSQRSPPFSLATALPVLRLLDETLTLE 234
Query: 246 EANLLNAVIVQRL 258
EA+L NAVI+QRL
Sbjct: 235 EADLQNAVIIQRL 247
>gi|116734689 socius isoform 3 [Homo sapiens]
Length = 400
Score = 41.6 bits (96), Expect = 7e-04
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 71 VVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDE 130
+ LKL+++G + +G + + DPS + L I G P+EL+RL G V + D R++
Sbjct: 113 IPLKLYRNGIMMFDGPFQPFYDPSTQRCLRDILDGFFPSELQRLYPNG-VPFKVSDLRNQ 171
Query: 131 DFVKPKGAFKAFTGEGQKLG 150
++ + F GEG+ +G
Sbjct: 172 VYL--EDGLDPFPGEGRVVG 189
>gi|116734681 socius isoform 1 [Homo sapiens]
Length = 487
Score = 41.6 bits (96), Expect = 7e-04
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 71 VVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDE 130
+ LKL+++G + +G + + DPS + L I G P+EL+RL G V + D R++
Sbjct: 200 IPLKLYRNGIMMFDGPFQPFYDPSTQRCLRDILDGFFPSELQRLYPNG-VPFKVSDLRNQ 258
Query: 131 DFVKPKGAFKAFTGEGQKLG 150
++ + F GEG+ +G
Sbjct: 259 VYL--EDGLDPFPGEGRVVG 276
>gi|116734679 socius isoform 2 [Homo sapiens]
Length = 520
Score = 41.6 bits (96), Expect = 7e-04
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 71 VVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDE 130
+ LKL+++G + +G + + DPS + L I G P+EL+RL G V + D R++
Sbjct: 233 IPLKLYRNGIMMFDGPFQPFYDPSTQRCLRDILDGFFPSELQRLYPNG-VPFKVSDLRNQ 291
Query: 131 DFVKPKGAFKAFTGEGQKLG 150
++ + F GEG+ +G
Sbjct: 292 VYL--EDGLDPFPGEGRVVG 309
>gi|13129078 alveolar soft part sarcoma chromosome region, candidate
1 [Homo sapiens]
Length = 553
Score = 41.2 bits (95), Expect = 0.001
Identities = 59/228 (25%), Positives = 83/228 (36%), Gaps = 21/228 (9%)
Query: 38 PFAGGGYRLGAAPEEESAYVAGEKRQHSSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQ 97
PF+GGG RLG P G R +S + L G + +S QDP Q
Sbjct: 244 PFSGGGQRLGGPP--------GPTRPLTSSSAKLPKSLSSPGGPSKPKKSKSGQDPQQEQ 295
Query: 98 FLESIRRGEVPAELRRLAHGGQVNL-------DMEDHRDEDFVKPKGAFKAFTGEGQKLG 150
E R + E R V+ D+E+ + F T + +
Sbjct: 296 EQERERDPQQEQERERPVDREPVDREPVVCHPDLEERLQAWPAELPDEFFELTVDDVR-- 353
Query: 151 STAPQVLSTSSPAQQAENEAKASSSILIDES---EPTTNIQIRLADGGRLVQKFNHSHRI 207
Q+ S ++A KA I E P +++ D L F S +
Sbjct: 354 RRLAQLKSERKRLEEAPLVTKAFREAQIKEKLERYPKVALRVLFPDRYVLQGFFRPSETV 413
Query: 208 SDIRLFIVDARPAMAATSFILMTTFPNKELADESQTLKEANLLNAVIV 255
D+R F V + SF L T P L D +QTL +ANL A +V
Sbjct: 414 GDLRDF-VRSHLGNPELSFYLFITPPKTVLDDHTQTLFQANLFPAALV 460
>gi|29725609 epidermal growth factor receptor isoform a precursor
[Homo sapiens]
Length = 1210
Score = 32.3 bits (72), Expect = 0.42
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 90 YQDP-----SNAQFLESIRRGEVPAELRRLAHGGQ-----VNLDMEDHRDEDF---VKPK 136
YQDP N ++L +++ V + AH Q ++LD D++ + F KP
Sbjct: 1125 YQDPHSTAVGNPEYLNTVQPTCVNSTFDSPAHWAQKGSHQISLDNPDYQQDFFPKEAKPN 1184
Query: 137 GAFKAFTGEGQKLGSTAPQ 155
G FK T E + APQ
Sbjct: 1185 GIFKGSTAENAEYLRVAPQ 1203
>gi|122937512 myosin VIIB [Homo sapiens]
Length = 2116
Score = 30.8 bits (68), Expect = 1.2
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 13/117 (11%)
Query: 51 EEESAYVAGEKRQHSSQDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIRRGEVPAE 110
+E Y+ G + +H+ ++K+ F+ D +L S + I R VP
Sbjct: 1914 QELPKYLRGFHKCSREDAIHLAGLIYKAQFNNDRSQLAS---------VPKILRELVPEN 1964
Query: 111 LRRLAHGGQ----VNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPA 163
L RL + + L + H+D+ + K AF + GS +V TS P+
Sbjct: 1965 LTRLMSSEEWKKSILLAYDKHKDKTVEEAKVAFLKWICRWPTFGSAFFEVKQTSEPS 2021
>gi|17978479 vacuolar protein sorting 16 isoform 1 [Homo sapiens]
Length = 839
Score = 30.0 bits (66), Expect = 2.1
Identities = 46/185 (24%), Positives = 73/185 (39%), Gaps = 27/185 (14%)
Query: 22 AVERVTKSPGETSKP-------RPFAGGGYRLGAAPEEESAYVAGEKRQ-HSSQDVHVVL 73
AV++ ++ G +P R + G L P + ++ + R ++ +D H+ +
Sbjct: 379 AVQQCIEAAGHEHQPDMQKSLLRAASFGKCFLDRFPPDSFVHMCQDLRVLNAVRDYHIGI 438
Query: 74 KLWKSGFS-------LDNGELRSYQDPSNAQFLESIRRGEVPAELRRLAHGGQVNLDMED 126
L S + LD LR P Q E +R EV R LAH + +D
Sbjct: 439 PLTYSQYKQLTIQVLLDRLVLRRLY-PLAIQICEYLRLPEVQGVSRILAHWACYKVQQKD 497
Query: 127 HRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTN 186
DED + QKLG T +S S A +A + +I + E EP +
Sbjct: 498 VSDEDVAR---------AINQKLGDTPG--VSYSDIAARAYGCGRTELAIKLLEYEPRSG 546
Query: 187 IQIRL 191
Q+ L
Sbjct: 547 EQVPL 551
>gi|74319833 ubiquitin specific protease 9, Y-linked [Homo sapiens]
Length = 2555
Score = 30.0 bits (66), Expect = 2.1
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 28 KSPGETSKPRPFAGGGYRLGAAPEEESAYVAGEKRQHSSQDVHVVLKLWKSGFSLDNGEL 87
K+ GET P G LG +E A+ EK+ H + K G +L +
Sbjct: 1417 KNTGETGVEEPILEG--HLGVT-KELLAFQTSEKKYHFGCE--------KGGANLIKELI 1465
Query: 88 RSYQDPSNAQFLESIRRGEVPAE 110
+ P++ +L+ +R GE+PAE
Sbjct: 1466 DDFIFPASKVYLQYLRSGELPAE 1488
>gi|133925809 inter-alpha (globulin) inhibitor H3 preproprotein
[Homo sapiens]
Length = 890
Score = 30.0 bits (66), Expect = 2.1
Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 24/130 (18%)
Query: 124 MEDHRDEDFVKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEP 183
+ED ++ED++ F F+G+ ST + L ++P EN +A + + E +
Sbjct: 311 LEDMQEEDYLN----FILFSGDV----STWKEHLVQATP----ENLQEARTFVKSMEDKG 358
Query: 184 TTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFILMTTFPNKELADESQT 243
TNI L G ++ K HRI + +TS ++M T + + +
Sbjct: 359 MTNINDGLLRGISMLNKAREEHRIPE------------RSTSIVIMLTDGDANVGESRPE 406
Query: 244 LKEANLLNAV 253
+ N+ NA+
Sbjct: 407 KIQENVRNAI 416
>gi|17978481 vacuolar protein sorting 16 isoform 3 [Homo sapiens]
Length = 695
Score = 29.6 bits (65), Expect = 2.7
Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 11/99 (11%)
Query: 93 PSNAQFLESIRRGEVPAELRRLAHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLGST 152
P Q E +R EV R LAH + +D DED + QKLG T
Sbjct: 320 PLAIQICEYLRLPEVQGVSRILAHWACYKVQQKDVSDEDVAR---------AINQKLGDT 370
Query: 153 APQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQIRL 191
+S S A +A + +I + E EP + Q+ L
Sbjct: 371 PG--VSYSDIAARAYGCGRTELAIKLLEYEPRSGEQVPL 407
>gi|139394579 zinc finger and BTB domain containing 40 [Homo
sapiens]
Length = 1239
Score = 29.6 bits (65), Expect = 2.7
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 133 VKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNI 187
++ K +K FT E + L T ++LS S E +A S +++S P I
Sbjct: 589 IQQKIEYKLFTSEEEHLAETVKEILSIPSETASPEASLRAVLSRAMEKSVPAIEI 643
>gi|139394556 zinc finger and BTB domain containing 40 [Homo
sapiens]
Length = 1239
Score = 29.6 bits (65), Expect = 2.7
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 133 VKPKGAFKAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNI 187
++ K +K FT E + L T ++LS S E +A S +++S P I
Sbjct: 589 IQQKIEYKLFTSEEEHLAETVKEILSIPSETASPEASLRAVLSRAMEKSVPAIEI 643
>gi|21361517 UBX domain protein 1 [Homo sapiens]
Length = 312
Score = 29.6 bits (65), Expect = 2.7
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 146 GQKLGSTAPQVLSTSSPAQQAENEAKASSSILIDESEPTTNIQIRLADGGRLVQKFNHSH 205
G +GS P V P + ++ + IQ+RL DG L Q F
Sbjct: 180 GGSVGSQPPPVAPEPGPVPSSPSQEPPTK-----REYDQCRIQVRLPDGTSLTQTFRARE 234
Query: 206 RISDIRLFI 214
+++ +RL++
Sbjct: 235 QLAAVRLYV 243
>gi|94536798 high mobility group AT-hook 1-like 4 [Homo sapiens]
Length = 356
Score = 29.3 bits (64), Expect = 3.6
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 3 KMKMRRKRKARGAKEHGAVAVERVTKSPGETSKPRPFAGGGYRLG---AAPEEESAYVAG 59
+ + RR + AR A+EH +ER+TK+ + + G R G AAP Y +G
Sbjct: 219 RARKRRLQAARRAEEHKNQTIERLTKTAATSGRGGRGGARGERRGGRAAAPAPMVRYCSG 278
>gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f
[Homo sapiens]
Length = 1412
Score = 28.9 bits (63), Expect = 4.7
Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 19/153 (12%)
Query: 29 SPGETSKPRPFAGGGY---RLGAAPEEESAYVAGEKRQHSSQDVHVVLKLWKSGFSLDNG 85
+PG+ + P P G + A EE + + E+ S ++ L ++ S
Sbjct: 233 TPGKGATPAPPGKAGAVASQTKAGKPEEDSESSSEESSDSEEETPAAKALLQAKASGKTS 292
Query: 86 ELRSYQDPSNAQFLESIRRGEVPAELRRL------AHGGQVNLDMEDHRDEDFVKPKGAF 139
++ + P+ ES R+G PA + A G+ D + +E + +
Sbjct: 293 QVGAASAPAK----ESPRKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPA 348
Query: 140 KAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKA 172
+A K APQV + S+PA+++ + A
Sbjct: 349 QA------KPSGKAPQVRAASAPAKESPRKGAA 375
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 28.9 bits (63), Expect = 4.7
Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 19/153 (12%)
Query: 29 SPGETSKPRPFAGGGY---RLGAAPEEESAYVAGEKRQHSSQDVHVVLKLWKSGFSLDNG 85
+PG+ + P P G + A EE + + E+ S ++ L ++ S
Sbjct: 310 TPGKGATPAPPGKAGAVASQTKAGKPEEDSESSSEESSDSEEETPAAKALLQAKASGKTS 369
Query: 86 ELRSYQDPSNAQFLESIRRGEVPAELRRL------AHGGQVNLDMEDHRDEDFVKPKGAF 139
++ + P+ ES R+G PA + A G+ D + +E + +
Sbjct: 370 QVGAASAPAK----ESPRKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPA 425
Query: 140 KAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKA 172
+A K APQV + S+PA+++ + A
Sbjct: 426 QA------KPSGKAPQVRAASAPAKESPRKGAA 452
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 28.9 bits (63), Expect = 4.7
Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 19/153 (12%)
Query: 29 SPGETSKPRPFAGGGY---RLGAAPEEESAYVAGEKRQHSSQDVHVVLKLWKSGFSLDNG 85
+PG+ + P P G + A EE + + E+ S ++ L ++ S
Sbjct: 310 TPGKGATPAPPGKAGAVASQTKAGKPEEDSESSSEESSDSEEETPAAKALLQAKASGKTS 369
Query: 86 ELRSYQDPSNAQFLESIRRGEVPAELRRL------AHGGQVNLDMEDHRDEDFVKPKGAF 139
++ + P+ ES R+G PA + A G+ D + +E + +
Sbjct: 370 QVGAASAPAK----ESPRKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPA 425
Query: 140 KAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKA 172
+A K APQV + S+PA+++ + A
Sbjct: 426 QA------KPSGKAPQVRAASAPAKESPRKGAA 452
>gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b
[Homo sapiens]
Length = 1411
Score = 28.9 bits (63), Expect = 4.7
Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 19/153 (12%)
Query: 29 SPGETSKPRPFAGGGY---RLGAAPEEESAYVAGEKRQHSSQDVHVVLKLWKSGFSLDNG 85
+PG+ + P P G + A EE + + E+ S ++ L ++ S
Sbjct: 233 TPGKGATPAPPGKAGAVASQTKAGKPEEDSESSSEESSDSEEETPAAKALLQAKASGKTS 292
Query: 86 ELRSYQDPSNAQFLESIRRGEVPAELRRL------AHGGQVNLDMEDHRDEDFVKPKGAF 139
++ + P+ ES R+G PA + A G+ D + +E + +
Sbjct: 293 QVGAASAPAK----ESPRKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPA 348
Query: 140 KAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKA 172
+A K APQV + S+PA+++ + A
Sbjct: 349 QA------KPSGKAPQVRAASAPAKESPRKGAA 375
>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a
[Homo sapiens]
Length = 1450
Score = 28.9 bits (63), Expect = 4.7
Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 19/153 (12%)
Query: 29 SPGETSKPRPFAGGGY---RLGAAPEEESAYVAGEKRQHSSQDVHVVLKLWKSGFSLDNG 85
+PG+ + P P G + A EE + + E+ S ++ L ++ S
Sbjct: 310 TPGKGATPAPPGKAGAVASQTKAGKPEEDSESSSEESSDSEEETPAAKALLQAKASGKTS 369
Query: 86 ELRSYQDPSNAQFLESIRRGEVPAELRRL------AHGGQVNLDMEDHRDEDFVKPKGAF 139
++ + P+ ES R+G PA + A G+ D + +E + +
Sbjct: 370 QVGAASAPAK----ESPRKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPA 425
Query: 140 KAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKA 172
+A K APQV + S+PA+++ + A
Sbjct: 426 QA------KPSGKAPQVRAASAPAKESPRKGAA 452
>gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c
[Homo sapiens]
Length = 958
Score = 28.9 bits (63), Expect = 4.7
Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 19/153 (12%)
Query: 29 SPGETSKPRPFAGGGY---RLGAAPEEESAYVAGEKRQHSSQDVHVVLKLWKSGFSLDNG 85
+PG+ + P P G + A EE + + E+ S ++ L ++ S
Sbjct: 310 TPGKGATPAPPGKAGAVASQTKAGKPEEDSESSSEESSDSEEETPAAKALLQAKASGKTS 369
Query: 86 ELRSYQDPSNAQFLESIRRGEVPAELRRL------AHGGQVNLDMEDHRDEDFVKPKGAF 139
++ + P+ ES R+G PA + A G+ D + +E + +
Sbjct: 370 QVGAASAPAK----ESPRKGAAPAPPGKTGPAVAKAQAGKREEDSQSSSEESDSEEEAPA 425
Query: 140 KAFTGEGQKLGSTAPQVLSTSSPAQQAENEAKA 172
+A K APQV + S+PA+++ + A
Sbjct: 426 QA------KPSGKAPQVRAASAPAKESPRKGAA 452
>gi|148612882 cat eye syndrome chromosome region, candidate 2 [Homo
sapiens]
Length = 1484
Score = 28.5 bits (62), Expect = 6.1
Identities = 31/115 (26%), Positives = 42/115 (36%), Gaps = 15/115 (13%)
Query: 7 RRKRKARGAKEHGAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEEESAYVAGEKRQHSS 66
R KR++R + G+ R G + K +P GG L P + ++ S+
Sbjct: 558 REKRRSRAGRSGGSHVWTRSRDPEGSSRKQQPMENGGKSL--PPTRRAPSSGDDQSSSST 615
Query: 67 QDVHVVLKLWKSGFSLDNGELRSYQDPSNAQFLESIR----------RGEVPAEL 111
Q V GFS L PS A FL +R RG PA L
Sbjct: 616 QPPREVGTSNGRGFS---HPLHCGGTPSQAPFLNQMRPAVPGTFGPLRGSDPATL 667
>gi|90819237 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 4 isoform 1 [Homo
sapiens]
Length = 1834
Score = 28.1 bits (61), Expect = 8.0
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 18 HGAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEE--------------ESAYVAGEKRQ 63
H ++A++RVT+S E + + + +R+ AA + +S+ + E
Sbjct: 1263 HSSIAIQRVTRSQEELREDKAYQLERHRIEAAMDRKSDSDMWINQSSSLDSSTSSQEHLN 1322
Query: 64 HSSQDVHVVLKLWKSG 79
HSS+ V L KSG
Sbjct: 1323 HSSKSVTPASTLTKSG 1338
>gi|90819233 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 4 isoform 2 [Homo
sapiens]
Length = 1651
Score = 28.1 bits (61), Expect = 8.0
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 18 HGAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEE--------------ESAYVAGEKRQ 63
H ++A++RVT+S E + + + +R+ AA + +S+ + E
Sbjct: 1264 HSSIAIQRVTRSQEELREDKAYQLERHRIEAAMDRKSDSDMWINQSSSLDSSTSSQEHLN 1323
Query: 64 HSSQDVHVVLKLWKSG 79
HSS+ V L KSG
Sbjct: 1324 HSSKSVTPASTLTKSG 1339
>gi|90819231 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 4 isoform 3 [Homo
sapiens]
Length = 1612
Score = 28.1 bits (61), Expect = 8.0
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 14/76 (18%)
Query: 18 HGAVAVERVTKSPGETSKPRPFAGGGYRLGAAPEE--------------ESAYVAGEKRQ 63
H ++A++RVT+S E + + + +R+ AA + +S+ + E
Sbjct: 1248 HSSIAIQRVTRSQEELREDKAYQLERHRIEAAMDRKSDSDMWINQSSSLDSSTSSQEHLN 1307
Query: 64 HSSQDVHVVLKLWKSG 79
HSS+ V L KSG
Sbjct: 1308 HSSKSVTPASTLTKSG 1323
>gi|32454739 tripartite motif-containing 3 [Homo sapiens]
Length = 744
Score = 28.1 bits (61), Expect = 8.0
Identities = 37/156 (23%), Positives = 57/156 (36%), Gaps = 37/156 (23%)
Query: 23 VERVTKSPGETSKPRPFAGGGYRLGAAPEEESAYVAGEKRQHSSQDVHVVLKLWKSGFSL 82
V+R KSPG G R A S Y G KR+ + + +V ++ G
Sbjct: 431 VKRRVKSPGGP-------GSHVRQKAVRRPSSMYSTGGKRKDNPIEDELVFRVGSRG--R 481
Query: 83 DNGELRSYQD------------PSNAQFLESIR-----------RGEVPAELRR-----L 114
+ GE + Q SN Q ++ RG P +L+R +
Sbjct: 482 EKGEFTNLQGVSAASSGRIVVADSNNQCIQVFSNEGQFKFRFGVRGRSPGQLQRPTGVAV 541
Query: 115 AHGGQVNLDMEDHRDEDFVKPKGAFKAFTGEGQKLG 150
G + + D+R P+G FK G G+ +G
Sbjct: 542 DTNGDIIVADYDNRWVSIFSPEGKFKTKIGAGRLMG 577
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.129 0.355
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,658,861
Number of Sequences: 37866
Number of extensions: 442733
Number of successful extensions: 1174
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1146
Number of HSP's gapped (non-prelim): 43
length of query: 259
length of database: 18,247,518
effective HSP length: 100
effective length of query: 159
effective length of database: 14,460,918
effective search space: 2299285962
effective search space used: 2299285962
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.