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Search of human proteins with 123701942
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|123701942 hypothetical protein LOC199990 isoform 2 [Homo
sapiens]
(180 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|123701942 hypothetical protein LOC199990 isoform 2 [Homo sapi... 386 e-108
gi|42544161 forkhead box M1 isoform 3 [Homo sapiens] 37 0.012
gi|42544165 forkhead box M1 isoform 2 [Homo sapiens] 37 0.012
gi|42544167 forkhead box M1 isoform 1 [Homo sapiens] 37 0.012
gi|169215850 PREDICTED: transmembrane protein 46-like [Homo sapi... 35 0.027
gi|7705881 zinc finger protein 580 [Homo sapiens] 35 0.027
gi|46361970 zinc finger protein 580 [Homo sapiens] 35 0.027
gi|33286436 gametogenetin [Homo sapiens] 35 0.035
gi|239755981 PREDICTED: hypothetical protein XP_002344766 [Homo ... 33 0.10
gi|239750506 PREDICTED: hypothetical protein XP_002347417 [Homo ... 33 0.10
gi|239744803 PREDICTED: hypothetical protein XP_002343287 [Homo ... 33 0.10
gi|239747614 PREDICTED: similar to Putative uncharacterized prot... 33 0.13
gi|94536830 DMRT-like family C2 [Homo sapiens] 33 0.13
gi|18201913 forkhead box N1 [Homo sapiens] 33 0.17
gi|21389357 MAPK-interacting and spindle-stabilizing protein [Ho... 33 0.17
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 32 0.23
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 32 0.23
gi|19924099 synapsin I isoform Ia [Homo sapiens] 32 0.23
gi|19924097 synapsin I isoform Ib [Homo sapiens] 32 0.23
gi|189181750 human immunodeficiency virus type I enhancer bindin... 32 0.23
gi|116089331 human immunodeficiency virus type I enhancer bindin... 32 0.23
gi|4826908 phosphoinositide-3-kinase, regulatory subunit 2 (beta... 32 0.29
gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo ... 32 0.38
gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo ... 32 0.38
gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo ... 32 0.38
gi|110825988 TAR RNA binding protein 1 [Homo sapiens] 32 0.38
gi|153252068 testes-specific heterogenous nuclear ribonucleoprot... 32 0.38
gi|221554537 docking protein 3 isoform 1 [Homo sapiens] 31 0.50
gi|169169586 PREDICTED: hypothetical protein [Homo sapiens] 31 0.50
gi|74027251 tripartite motif-containing 33 protein isoform beta ... 31 0.50
>gi|123701942 hypothetical protein LOC199990 isoform 2 [Homo
sapiens]
Length = 180
Score = 386 bits (991), Expect = e-108
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 1 MEAARRPRLGLSRRRPPPAGGPSGGRPWFLLGGDERERLWAELLRTVSPELILDHEVPSL 60
MEAARRPRLGLSRRRPPPAGGPSGGRPWFLLGGDERERLWAELLRTVSPELILDHEVPSL
Sbjct: 1 MEAARRPRLGLSRRRPPPAGGPSGGRPWFLLGGDERERLWAELLRTVSPELILDHEVPSL 60
Query: 61 PAFPGQEPRCGPEPTEVFTVGPKTFSWTPFPPDLWGPGRSYRLLHGAGGHLESPARSLPQ 120
PAFPGQEPRCGPEPTEVFTVGPKTFSWTPFPPDLWGPGRSYRLLHGAGGHLESPARSLPQ
Sbjct: 61 PAFPGQEPRCGPEPTEVFTVGPKTFSWTPFPPDLWGPGRSYRLLHGAGGHLESPARSLPQ 120
Query: 121 RPAPDPCRAPRVEQQPSVEGAAALRSCPMCQKEFAPRLTQLDVDSHLAQCLAESTEDVTW 180
RPAPDPCRAPRVEQQPSVEGAAALRSCPMCQKEFAPRLTQLDVDSHLAQCLAESTEDVTW
Sbjct: 121 RPAPDPCRAPRVEQQPSVEGAAALRSCPMCQKEFAPRLTQLDVDSHLAQCLAESTEDVTW 180
>gi|42544161 forkhead box M1 isoform 3 [Homo sapiens]
Length = 748
Score = 36.6 bits (83), Expect = 0.012
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 68 PRCGPEPTEVFTVGPKTFSWT---PFPPDLWGPGRSYRLLHGAGGHLESPAR-SLPQRPA 123
P C EP +F+ GP T W PFP D P GG ++P + +LP
Sbjct: 537 PPCVDEPELLFSEGPSTSRWAAELPFPADSSDPASQLSYSQEVGGPFKTPIKETLPISST 596
Query: 124 PDPCRAPRVEQ 134
P PR +
Sbjct: 597 PSKSVLPRTPE 607
>gi|42544165 forkhead box M1 isoform 2 [Homo sapiens]
Length = 763
Score = 36.6 bits (83), Expect = 0.012
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 68 PRCGPEPTEVFTVGPKTFSWT---PFPPDLWGPGRSYRLLHGAGGHLESPAR-SLPQRPA 123
P C EP +F+ GP T W PFP D P GG ++P + +LP
Sbjct: 552 PPCVDEPELLFSEGPSTSRWAAELPFPADSSDPASQLSYSQEVGGPFKTPIKETLPISST 611
Query: 124 PDPCRAPRVEQ 134
P PR +
Sbjct: 612 PSKSVLPRTPE 622
>gi|42544167 forkhead box M1 isoform 1 [Homo sapiens]
Length = 801
Score = 36.6 bits (83), Expect = 0.012
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 68 PRCGPEPTEVFTVGPKTFSWT---PFPPDLWGPGRSYRLLHGAGGHLESPAR-SLPQRPA 123
P C EP +F+ GP T W PFP D P GG ++P + +LP
Sbjct: 590 PPCVDEPELLFSEGPSTSRWAAELPFPADSSDPASQLSYSQEVGGPFKTPIKETLPISST 649
Query: 124 PDPCRAPRVEQ 134
P PR +
Sbjct: 650 PSKSVLPRTPE 660
>gi|169215850 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 547
Score = 35.4 bits (80), Expect = 0.027
Identities = 47/165 (28%), Positives = 57/165 (34%), Gaps = 17/165 (10%)
Query: 3 AARRPRLGLSRRRPPPAGGPSGGR-----PWFLLGGDERERLWAELLRTVSPELILDHEV 57
A R PR R RP PA PS P LG L + +P
Sbjct: 373 ANRLPRPSGPRPRPAPARSPSQSPAGTPCPVLSLGARRGVTLPCPVPAEAAPRDFC-QRF 431
Query: 58 PSLPAFPGQEPRCGPEPTEVFTVGPKTFSWTPFPPDLWGPGRSYRLLHGAGGHLESPARS 117
P+L P Q P P P+ P P+ P ++ P A G + S
Sbjct: 432 PALEPSPRQPPARAPRPSPDL---PAPLDACPWAPPVYAP-------PAAPGPYAAWTSS 481
Query: 118 LPQRPAPDPCRAPRVEQQPSVEGAAALRSCPMCQKE-FAPRLTQL 161
P RPAP R Q P G AA R + E F P+L L
Sbjct: 482 RPARPAPLSHPTARAFQVPRRPGHAARRQFSVKMPETFNPQLPGL 526
>gi|7705881 zinc finger protein 580 [Homo sapiens]
Length = 172
Score = 35.4 bits (80), Expect = 0.027
Identities = 41/121 (33%), Positives = 45/121 (37%), Gaps = 34/121 (28%)
Query: 45 RTVSPELILDHEVPSLPAFPGQEPRCGPEPTEVFTVGPKTFSWTPFPPDLWGPGRSYRLL 104
R+ SPE +D P P FP E GP T GP+ PP L GR LL
Sbjct: 12 RSSSPEA-MDPPPPKAPPFPKAE---GPSSTPSSAAGPR-------PPRL---GR--HLL 55
Query: 105 HGAGG-------HLESPARSLPQRPAPDPCRAPRVEQQPSVEGAAALRSCPMCQKEFAPR 157
A G LE R PQR AP P G SCP C + FA
Sbjct: 56 IDANGVPYTYTVQLEEEPRGPPQREAP-----------PGEPGPRKGYSCPECARVFASP 104
Query: 158 L 158
L
Sbjct: 105 L 105
>gi|46361970 zinc finger protein 580 [Homo sapiens]
Length = 172
Score = 35.4 bits (80), Expect = 0.027
Identities = 41/121 (33%), Positives = 45/121 (37%), Gaps = 34/121 (28%)
Query: 45 RTVSPELILDHEVPSLPAFPGQEPRCGPEPTEVFTVGPKTFSWTPFPPDLWGPGRSYRLL 104
R+ SPE +D P P FP E GP T GP+ PP L GR LL
Sbjct: 12 RSSSPEA-MDPPPPKAPPFPKAE---GPSSTPSSAAGPR-------PPRL---GR--HLL 55
Query: 105 HGAGG-------HLESPARSLPQRPAPDPCRAPRVEQQPSVEGAAALRSCPMCQKEFAPR 157
A G LE R PQR AP P G SCP C + FA
Sbjct: 56 IDANGVPYTYTVQLEEEPRGPPQREAP-----------PGEPGPRKGYSCPECARVFASP 104
Query: 158 L 158
L
Sbjct: 105 L 105
>gi|33286436 gametogenetin [Homo sapiens]
Length = 652
Score = 35.0 bits (79), Expect = 0.035
Identities = 31/96 (32%), Positives = 36/96 (37%), Gaps = 4/96 (4%)
Query: 58 PSLPAFPG-QEPRCGPEPTEVFTVGPKTFSWTPFP---PDLWGPGRSYRLLHGAGGHLES 113
P P PG QE P PT T+ P TP P P G G L
Sbjct: 426 PMRPGPPGLQELPPLPPPTPPPTLQPPALQPTPLPVAPPLTPGLGHKESALAPTAAPALP 485
Query: 114 PARSLPQRPAPDPCRAPRVEQQPSVEGAAALRSCPM 149
PA + Q PAP P AP V + A A + P+
Sbjct: 486 PALAADQAPAPSPAPAPTVAEPSPPVSAPAPAAAPI 521
>gi|239755981 PREDICTED: hypothetical protein XP_002344766 [Homo
sapiens]
Length = 307
Score = 33.5 bits (75), Expect = 0.10
Identities = 28/93 (30%), Positives = 33/93 (35%), Gaps = 22/93 (23%)
Query: 68 PRCGPEPTEVFTVGPKTFSWTPFPPDLWGPGRSYRLLHGAGGHLESPARSLPQRPAP--- 124
P P P + V P TF T P R+ RL G+G + R RP P
Sbjct: 40 PPSSPPPLHITPVLPPTFPGTQ-------PPRALRLAEGSGEGKQEEGRRAQARPRPLRP 92
Query: 125 ---------DPCRAP---RVEQQPSVEGAAALR 145
PC AP R P + AAA R
Sbjct: 93 PWEVRGGARGPCSAPVGSRASSGPGLPSAAAAR 125
>gi|239750506 PREDICTED: hypothetical protein XP_002347417 [Homo
sapiens]
Length = 325
Score = 33.5 bits (75), Expect = 0.10
Identities = 28/93 (30%), Positives = 33/93 (35%), Gaps = 22/93 (23%)
Query: 68 PRCGPEPTEVFTVGPKTFSWTPFPPDLWGPGRSYRLLHGAGGHLESPARSLPQRPAP--- 124
P P P + V P TF T P R+ RL G+G + R RP P
Sbjct: 58 PPSSPPPLHITPVLPPTFPGTQ-------PPRALRLAEGSGEGKQEEGRRAQARPRPLRP 110
Query: 125 ---------DPCRAP---RVEQQPSVEGAAALR 145
PC AP R P + AAA R
Sbjct: 111 PWEVRGGARGPCSAPVGSRASSGPGLPSAAAAR 143
>gi|239744803 PREDICTED: hypothetical protein XP_002343287 [Homo
sapiens]
Length = 325
Score = 33.5 bits (75), Expect = 0.10
Identities = 28/93 (30%), Positives = 33/93 (35%), Gaps = 22/93 (23%)
Query: 68 PRCGPEPTEVFTVGPKTFSWTPFPPDLWGPGRSYRLLHGAGGHLESPARSLPQRPAP--- 124
P P P + V P TF T P R+ RL G+G + R RP P
Sbjct: 58 PPSSPPPLHITPVLPPTFPGTQ-------PPRALRLAEGSGEGKQEEGRRAQARPRPLRP 110
Query: 125 ---------DPCRAP---RVEQQPSVEGAAALR 145
PC AP R P + AAA R
Sbjct: 111 PWEVRGGARGPCSAPVGSRASSGPGLPSAAAAR 143
>gi|239747614 PREDICTED: similar to Putative uncharacterized protein
FLJ44672 [Homo sapiens]
Length = 259
Score = 33.1 bits (74), Expect = 0.13
Identities = 34/129 (26%), Positives = 46/129 (35%), Gaps = 14/129 (10%)
Query: 6 RPRLGLSRRR---PPPAGGPSGGRPWFLLGGDERERLWAELLRTVSPELILDHEVPS--L 60
RP +GLSR P + GPS + LG +E++ + P +L P L
Sbjct: 129 RPEVGLSRPSLGLPAASAGPSHPQIGLELGLEEQQ------VGLPGPNSVLSAASPGAKL 182
Query: 61 PAFPGQEPRCGPEPTEVFTVGPKTFSWTPFPP---DLWGPGRSYRLLHGAGGHLESPARS 117
P P P F P ++ FP D W P ++ L PA
Sbjct: 183 PRVSLSRPSSSCLPVASFXAQPSSWLSAAFPGPAFDFWRPLQAQNLTSSGPLQARPPASR 242
Query: 118 LPQRPAPDP 126
P R P P
Sbjct: 243 RPARARPRP 251
>gi|94536830 DMRT-like family C2 [Homo sapiens]
Length = 367
Score = 33.1 bits (74), Expect = 0.13
Identities = 29/96 (30%), Positives = 35/96 (36%), Gaps = 27/96 (28%)
Query: 47 VSPELILDHEVPSLPAFPGQEPRCGP----EPTEVFTVGPKTFSWTPFPPDLWGPGR--- 99
++P+ H L P + CGP P E SWTP PP W PG
Sbjct: 129 IAPQPQTPHGAVLLAPTPPGKNSCGPLLLSHPPEA-----SPLSWTPVPPGPWVPGHWLP 183
Query: 100 ---------SYRLLHGAGGHLESPARSLPQRPAPDP 126
RLL+ + PA SLP P DP
Sbjct: 184 PGFSMPPPVVCRLLY------QEPAVSLPPFPGFDP 213
>gi|18201913 forkhead box N1 [Homo sapiens]
Length = 648
Score = 32.7 bits (73), Expect = 0.17
Identities = 40/137 (29%), Positives = 55/137 (40%), Gaps = 21/137 (15%)
Query: 13 RRRPPPAGGPSGGRPWFL--LGGDERERLWAELL-------------RTVSPELILDHEV 57
+R+ P A S +P L L GD+RE+L + LL R ++P L +
Sbjct: 364 KRKDPIAVRKSMAKPEELDSLIGDKREKLGSPLLGCPPPGLSGSGPIRPLAPPAGLSPPL 423
Query: 58 PSLPAFPGQEPRCGPEPTEVFTVG--PKTFSWT--PFPPDLWGPGRSYRLLHGAGGHLES 113
SL PG P G P + +G P + T P L PG L GHLE
Sbjct: 424 HSLHPAPGPIP--GKNPLQDLLMGHTPSCYGQTYLHLSPGLAPPGPPQPLFPQPDGHLEL 481
Query: 114 PARSLPQRPAPDPCRAP 130
A+ + +P P P
Sbjct: 482 RAQPGTPQDSPLPAHTP 498
>gi|21389357 MAPK-interacting and spindle-stabilizing protein [Homo
sapiens]
Length = 245
Score = 32.7 bits (73), Expect = 0.17
Identities = 25/85 (29%), Positives = 31/85 (36%), Gaps = 15/85 (17%)
Query: 17 PPAGGPSGGRPWFLLGGDERERLWAELLRTVSPELILDHEVPSLPAFPGQEPRCGPEPTE 76
P A GP G PW G WA P + + P++P +P P P P +
Sbjct: 136 PAAAGPLG--PW----GSMSSGPWA-------PGMGGQYPTPNMP-YPSPGPYPAPPPPQ 181
Query: 77 VFTVGPKTFSWTPFPPDLWGPGRSY 101
P W PP WGP Y
Sbjct: 182 APGAAPPV-PWGTVPPGAWGPPAPY 205
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 32.3 bits (72), Expect = 0.23
Identities = 38/132 (28%), Positives = 44/132 (33%), Gaps = 23/132 (17%)
Query: 15 RPPPAGGPSGGRPWFLLGGDERERLWAELLRTVSPELILDHEVPSLPAFPGQEPRCGPEP 74
+PPP P G RP RE + + P VPS P P + P P
Sbjct: 263 KPPPPPPPVGNRPSI-----HREAVPPPPPQNNKPP------VPSTPR-PSASSQAPPPP 310
Query: 75 TEVFTVGPKTFSWTPFPPDLWGPGRSYRL------LHGAGGHLESPARSLPQRPAPDPCR 128
GP P PP G + RL L + L SP RS P P P
Sbjct: 311 PPPSRPGPP-----PLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPPPPSERP 365
Query: 129 APRVEQQPSVEG 140
P V P G
Sbjct: 366 PPPVRDPPGRSG 377
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 32.3 bits (72), Expect = 0.23
Identities = 38/132 (28%), Positives = 44/132 (33%), Gaps = 23/132 (17%)
Query: 15 RPPPAGGPSGGRPWFLLGGDERERLWAELLRTVSPELILDHEVPSLPAFPGQEPRCGPEP 74
+PPP P G RP RE + + P VPS P P + P P
Sbjct: 263 KPPPPPPPVGNRPSI-----HREAVPPPPPQNNKPP------VPSTPR-PSASSQAPPPP 310
Query: 75 TEVFTVGPKTFSWTPFPPDLWGPGRSYRL------LHGAGGHLESPARSLPQRPAPDPCR 128
GP P PP G + RL L + L SP RS P P P
Sbjct: 311 PPPSRPGPP-----PLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPPPPSERP 365
Query: 129 APRVEQQPSVEG 140
P V P G
Sbjct: 366 PPPVRDPPGRSG 377
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 32.3 bits (72), Expect = 0.23
Identities = 40/142 (28%), Positives = 57/142 (40%), Gaps = 16/142 (11%)
Query: 2 EAARRPRLGLSRRRPPPAGGPSGGRPWFLLGGDERERLWAELLRTVSPELILDHEVPSLP 61
+ +++P +++RPPP GGP P G +R+ L+ P H P
Sbjct: 447 QTSQQPAGPPAQQRPPPQGGPPQPGP-----GPQRQ---GPPLQQRPPPQGQQHLSGLGP 498
Query: 62 AFPGQEPRCGPEPTEVFTVGPKTFSWTPFPPDLWGPGRSYRLLHGAGGHLESPARSLPQR 121
P+ P PT P+ + PP G GR R + AGG PA P
Sbjct: 499 PAGSPLPQRLPSPTS----APQQPASQAAPP-TQGQGRQSRPV--AGGPGAPPAARPPAS 551
Query: 122 PAPD-PCRAPRVEQQPSVEGAA 142
P+P P+ +Q SV G A
Sbjct: 552 PSPQRQAGPPQATRQTSVSGPA 573
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 32.3 bits (72), Expect = 0.23
Identities = 40/142 (28%), Positives = 57/142 (40%), Gaps = 16/142 (11%)
Query: 2 EAARRPRLGLSRRRPPPAGGPSGGRPWFLLGGDERERLWAELLRTVSPELILDHEVPSLP 61
+ +++P +++RPPP GGP P G +R+ L+ P H P
Sbjct: 447 QTSQQPAGPPAQQRPPPQGGPPQPGP-----GPQRQ---GPPLQQRPPPQGQQHLSGLGP 498
Query: 62 AFPGQEPRCGPEPTEVFTVGPKTFSWTPFPPDLWGPGRSYRLLHGAGGHLESPARSLPQR 121
P+ P PT P+ + PP G GR R + AGG PA P
Sbjct: 499 PAGSPLPQRLPSPTS----APQQPASQAAPP-TQGQGRQSRPV--AGGPGAPPAARPPAS 551
Query: 122 PAPD-PCRAPRVEQQPSVEGAA 142
P+P P+ +Q SV G A
Sbjct: 552 PSPQRQAGPPQATRQTSVSGPA 573
>gi|189181750 human immunodeficiency virus type I enhancer binding
protein 3 b [Homo sapiens]
Length = 2405
Score = 32.3 bits (72), Expect = 0.23
Identities = 25/99 (25%), Positives = 35/99 (35%)
Query: 65 GQEPRCGPEPTEVFTVGPKTFSWTPFPPDLWGPGRSYRLLHGAGGHLESPARSLPQRPAP 124
GQ+ + P +V P P PG+ LL G+ L P R P
Sbjct: 75 GQQQKPPKRPPIEASVHISQLPQHPLTPAFMSPGKPEHLLEGSTWQLVDPMRPGPSGSFV 134
Query: 125 DPCRAPRVEQQPSVEGAAALRSCPMCQKEFAPRLTQLDV 163
P P+ + PS P K F PR +Q+ +
Sbjct: 135 APGLHPQSQLLPSHASIIPPEDLPGVPKVFVPRPSQVSL 173
>gi|116089331 human immunodeficiency virus type I enhancer binding
protein 3 [Homo sapiens]
Length = 2406
Score = 32.3 bits (72), Expect = 0.23
Identities = 25/99 (25%), Positives = 35/99 (35%)
Query: 65 GQEPRCGPEPTEVFTVGPKTFSWTPFPPDLWGPGRSYRLLHGAGGHLESPARSLPQRPAP 124
GQ+ + P +V P P PG+ LL G+ L P R P
Sbjct: 75 GQQQKPPKRPPIEASVHISQLPQHPLTPAFMSPGKPEHLLEGSTWQLVDPMRPGPSGSFV 134
Query: 125 DPCRAPRVEQQPSVEGAAALRSCPMCQKEFAPRLTQLDV 163
P P+ + PS P K F PR +Q+ +
Sbjct: 135 APGLHPQSQLLPSHASIIPPEDLPGVPKVFVPRPSQVSL 173
>gi|4826908 phosphoinositide-3-kinase, regulatory subunit 2 (beta)
[Homo sapiens]
Length = 728
Score = 32.0 bits (71), Expect = 0.29
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 11 LSRRRPPPAGGPSGGRPWFLLGGDERERLWAELLRTVSPELILDHEVPSLPAFPGQEPRC 70
L R PPP+ P GG P G + A L+ + E + + EV + PA P + P+
Sbjct: 254 LLRAPPPPSSPPPGGAP---DGSEPSPDFPALLVEKLLQEHLEEQEV-APPALPPKPPKA 309
Query: 71 GPEPT 75
P PT
Sbjct: 310 KPAPT 314
>gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 31.6 bits (70), Expect = 0.38
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 97 PGRSYRLLHGAGGHLESPARSLPQRPAPDPCRAPRVEQQPS 137
PG+ R GA GH +P + P PA P APR E Q S
Sbjct: 105 PGKPPRRPKGAAGHPSAPPAAAPAAPAQPP--APRPESQLS 143
>gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 31.6 bits (70), Expect = 0.38
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 97 PGRSYRLLHGAGGHLESPARSLPQRPAPDPCRAPRVEQQPS 137
PG+ R GA GH +P + P PA P APR E Q S
Sbjct: 105 PGKPPRRPKGAAGHPSAPPAAAPAAPAQPP--APRPESQLS 143
>gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 31.6 bits (70), Expect = 0.38
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 97 PGRSYRLLHGAGGHLESPARSLPQRPAPDPCRAPRVEQQPS 137
PG+ R GA GH +P + P PA P APR E Q S
Sbjct: 105 PGKPPRRPKGAAGHPSAPPAAAPAAPAQPP--APRPESQLS 143
>gi|110825988 TAR RNA binding protein 1 [Homo sapiens]
Length = 1621
Score = 31.6 bits (70), Expect = 0.38
Identities = 20/43 (46%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 107 AGGHLESPARSLPQRPA--PDPCRAPRVEQQPSVEGAAALRSC 147
A G+L RSL RPA PDP PR ++ AALRSC
Sbjct: 65 AAGYLVPLLRSLRGRPAGGPDPSLQPRHRRRVLRAAGAALRSC 107
>gi|153252068 testes-specific heterogenous nuclear ribonucleoprotein
G-T [Homo sapiens]
Length = 392
Score = 31.6 bits (70), Expect = 0.38
Identities = 46/148 (31%), Positives = 53/148 (35%), Gaps = 23/148 (15%)
Query: 4 ARRPRLGLSRRRPPPAGGPSGGRPWFLLG------GDERE--RLWAELLRTVSPELILDH 55
A +P SRR PPP S GRP FL G G R R + + + L
Sbjct: 84 ATKPAFESSRRGPPPPR--SRGRPRFLRGTRGGGGGPRRSPSRGGPDDDGGYTADFDLRP 141
Query: 56 EVPSLPAFPGQEPR-CGPEPTEVFTVGPKTFSWTPFPPDLWGPGRSYRLL--HGAGGHLE 112
+P G PR GP P GP S G G R L G G+
Sbjct: 142 SRAPMPMKRGPPPRRVGPPPKRAAPSGPARSS---------GGGMRGRALAVRGRDGY-S 191
Query: 113 SPARSLPQRPAPDPCRAPRVEQQPSVEG 140
P R P P DP PR E S +G
Sbjct: 192 GPPRREPLPPRRDPYLGPRDEGYSSRDG 219
>gi|221554537 docking protein 3 isoform 1 [Homo sapiens]
Length = 496
Score = 31.2 bits (69), Expect = 0.50
Identities = 18/61 (29%), Positives = 22/61 (36%), Gaps = 9/61 (14%)
Query: 88 TPFPPDLWGPGRSYRLLHGAGGHLESPARSLPQRPAPDPCRAPRVEQQPSVEGAAALRSC 147
TP PDL G + LP+ P PC PR PS++ LR
Sbjct: 293 TPCAPDL---------CRAVAGAIARQRERLPELTRPQPCPLPRATSLPSLDTPGELREM 343
Query: 148 P 148
P
Sbjct: 344 P 344
>gi|169169586 PREDICTED: hypothetical protein [Homo sapiens]
Length = 251
Score = 31.2 bits (69), Expect = 0.50
Identities = 39/135 (28%), Positives = 45/135 (33%), Gaps = 46/135 (34%)
Query: 13 RRRPPPAGGPSGGRPWFLLGGDERERLWAELLRTVSPELILDHEVPSLPAFPGQEPRCGP 72
R+RP GG GG G R A RT P+ PA + P C P
Sbjct: 3 RKRPHQQGGGGGGGQ-----GRHRHSSRAPGTRT-----------PATPARSPRPPLCAP 46
Query: 73 EPTEVFTVGPKTFSWTPFPPDLWGPGRSYRLLHGAGGHLESPARSLPQRPA-----PDPC 127
P PGR+ + AG PA + P RPA P P
Sbjct: 47 RPA---------------------PGRAQSPVPAAGAVPSPPAAAHPARPALRGETPAPG 85
Query: 128 RAPRV----EQQPSV 138
R R E QPSV
Sbjct: 86 RRGRATTRGEVQPSV 100
>gi|74027251 tripartite motif-containing 33 protein isoform beta
[Homo sapiens]
Length = 1110
Score = 31.2 bits (69), Expect = 0.50
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 107 AGGHLESPARSLPQRPAPDPCRAPRVEQQPSVEGAAALRSCPMCQKEFAPRLTQLDVDSH 166
AGG + +PA + PAP P P P A+ L +C +CQ+ R + +
Sbjct: 90 AGGAVSTPAPAPASAPAPGPSAGP-----PPGPPASLLDTCAVCQQSLQSR---REAEPK 141
Query: 167 LAQCL 171
L CL
Sbjct: 142 LLPCL 146
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.138 0.459
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,544,760
Number of Sequences: 37866
Number of extensions: 686792
Number of successful extensions: 3165
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 148
Number of HSP's that attempted gapping in prelim test: 3047
Number of HSP's gapped (non-prelim): 299
length of query: 180
length of database: 18,247,518
effective HSP length: 96
effective length of query: 84
effective length of database: 14,612,382
effective search space: 1227440088
effective search space used: 1227440088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.