TARBP1 814

Name: TARBP1	Sequence: fasta or formatted (1621aa)		NCBI GI: 110825988
Description: TAR RNA binding protein 1		Referenced in: RNases and RNA Stability tRNA Enzymes
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.6 124 3 C cysteine 2.5 40 2 D aspartate 4.0 65 2 E glutamate 6.7 109 2 F phenylalanine 4.0 65 3 G glycine 5.7 93 4 H histidine 2.0 33 1 I isoleucine 5.7 93 3 K lysine 5.4 87 2 L leucine 14.4 234 4 M methionine 1.7 27 1 N asparagine 3.1 51 2 P proline 4.1 67 2 Q glutamine 5.1 83 2 R arginine 5.0 81 3 S serine 7.9 128 4 T threonine 4.1 66 2 V valine 6.5 105 2 W tryptophan 2.2 35 2 Y tyrosine 2.2 35 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 TAR RNA binding protein 1 RYR1 0.005 skeletal muscle ryanodine receptor isoform 2 RYR1 0.005 skeletal muscle ryanodine receptor isoform 1 MEX3D 0.004 ring finger and KH domain containing 1 LOC100289969 0.004 PREDICTED: hypothetical protein XP_002347692 C11orf2 0.004 chromosome 11 open reading frame2 LOC100292370 0.004 PREDICTED: hypothetical protein FAM148A 0.004 nuclear localized factor 1 CDK3 0.003 cyclin-dependent kinase 3 LOC441869 0.003 hypothetical protein LOC441869 MCTP1 0.003 multiple C2 domains, transmembrane 1 isoform L [Hom... LOC100292082 0.003 PREDICTED: hypothetical protein XP_002345881 LOC100128142 0.003 PREDICTED: hypothetical protein LOC100128142 0.003 PREDICTED: similar to RIKEN cDNA E130309D14 FAM181B 0.003 hypothetical protein LOC220382 LOC100291743 0.003 PREDICTED: hypothetical protein XP_002344931 LOC100288859 0.003 PREDICTED: hypothetical protein XP_002343508 SPEF1 0.003 calponin-homology and microtubule-associated protein... MLL 0.002 myeloid/lymphoid or mixed-lineage leukemia protein [... LOC100293254 0.002 PREDICTED: hypothetical protein LOC100289377 0.002 PREDICTED: hypothetical protein LOC100289289 0.002 PREDICTED: hypothetical protein XP_002343409 LOC100289377 0.002 PREDICTED: hypothetical protein XP_002343119 LOC100131972 0.002 PREDICTED: hypothetical protein LOC100131972 0.002 PREDICTED: hypothetical protein TAF4 0.002 TBP-associated factor 4 SFI1 0.002 spindle assembly associated Sfi1 homolog isoform a [... SFI1 0.002 spindle assembly associated Sfi1 homolog isoform b [... TAS2R5 0.002 taste receptor T2R5 LOC65998 0.002 hypothetical protein LOC65998 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.