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Search of human proteins with 122937484
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|122937484 dorsal root ganglia homeobox [Homo sapiens]
(268 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|122937484 dorsal root ganglia homeobox [Homo sapiens] 541 e-154
gi|24497589 aristaless related homeobox [Homo sapiens] 137 1e-32
gi|55743092 aristaless-like homeobox 4 [Homo sapiens] 122 4e-28
gi|46249382 paired-like homeobox 2a [Homo sapiens] 113 2e-25
gi|12707580 paired-like homeobox 2b [Homo sapiens] 110 1e-24
gi|113204604 aristaless-like homeobox 3 [Homo sapiens] 109 2e-24
gi|126116581 retina and anterior neural fold homeobox [Homo sapi... 109 3e-24
gi|21361183 paired-like homeodomain transcription factor 2 isofo... 105 5e-23
gi|24234711 paired-like homeodomain transcription factor 2 isofo... 105 5e-23
gi|24234708 paired-like homeodomain transcription factor 2 isofo... 105 5e-23
gi|4505619 paired box 7 isoform 1 [Homo sapiens] 104 9e-23
gi|7524359 paired box 7 isoform 2 [Homo sapiens] 104 9e-23
gi|207029223 paired box 7 isoform 3 [Homo sapiens] 104 9e-23
gi|20070107 orthodenticle homeobox 1 [Homo sapiens] 103 2e-22
gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens] 102 3e-22
gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo sapi... 102 3e-22
gi|4826912 paired-like homeodomain 3 [Homo sapiens] 102 5e-22
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens] 102 5e-22
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens] 102 5e-22
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens] 102 5e-22
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens] 102 5e-22
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens] 102 5e-22
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens] 102 5e-22
gi|152963644 paired-like homeodomain transcription factor 1 [Hom... 101 6e-22
gi|7706659 paired related homeobox 2 [Homo sapiens] 101 8e-22
gi|87044888 short stature homeobox 2 isoform b [Homo sapiens] 100 2e-21
gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens] 100 2e-21
gi|4506943 short stature homeobox isoform SHOXa [Homo sapiens] 99 5e-21
gi|189083681 paired box gene 6 isoform a [Homo sapiens] 99 5e-21
gi|4580424 paired box gene 6 isoform b [Homo sapiens] 99 5e-21
>gi|122937484 dorsal root ganglia homeobox [Homo sapiens]
Length = 268
Score = 541 bits (1393), Expect = e-154
Identities = 268/268 (100%), Positives = 268/268 (100%)
Query: 1 MVLMSCDQRLISLLLVGTATFGNHSSGDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQT 60
MVLMSCDQRLISLLLVGTATFGNHSSGDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQT
Sbjct: 1 MVLMSCDQRLISLLLVGTATFGNHSSGDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQT 60
Query: 61 HYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTERGASDQEPGAKEPMAEVTPPPVR 120
HYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTERGASDQEPGAKEPMAEVTPPPVR
Sbjct: 61 HYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKTERGASDQEPGAKEPMAEVTPPPVR 120
Query: 121 NINSPPPGDQARSKKEALEAQQSLGRTVGPAGPFFPSCLPGTLLNTATYAQALSHVASLK 180
NINSPPPGDQARSKKEALEAQQSLGRTVGPAGPFFPSCLPGTLLNTATYAQALSHVASLK
Sbjct: 121 NINSPPPGDQARSKKEALEAQQSLGRTVGPAGPFFPSCLPGTLLNTATYAQALSHVASLK 180
Query: 181 GGPLCSCCVPDPMGLSFLPTYGCQSNRTASVATLRMKAREHSEAVLQSANLLPSTSSSPG 240
GGPLCSCCVPDPMGLSFLPTYGCQSNRTASVATLRMKAREHSEAVLQSANLLPSTSSSPG
Sbjct: 181 GGPLCSCCVPDPMGLSFLPTYGCQSNRTASVATLRMKAREHSEAVLQSANLLPSTSSSPG 240
Query: 241 PVAKPAPPDGSQEKTSPTKEQSEAEKSV 268
PVAKPAPPDGSQEKTSPTKEQSEAEKSV
Sbjct: 241 PVAKPAPPDGSQEKTSPTKEQSEAEKSV 268
>gi|24497589 aristaless related homeobox [Homo sapiens]
Length = 562
Score = 137 bits (344), Expect = 1e-32
Identities = 100/245 (40%), Positives = 124/245 (50%), Gaps = 34/245 (13%)
Query: 25 SSGDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQV 84
+ D ++G L+RKQRR RTTFT QLE LE F +THYPDVFTREELAM+++LTEARVQV
Sbjct: 315 AGSDSEEGLLKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQV 374
Query: 85 WFQNRRAKWRKTER-GASDQEPG--------AKEPM-----AEVTPPPVRNINS------ 124
WFQNRRAKWRK E+ GA PG A P+ A PP ++S
Sbjct: 375 WFQNRRAKWRKREKAGAQTHPPGLPFPGPLSATHPLSPYLDASPFPPHHPALDSAWTAAA 434
Query: 125 -----------PPPGDQARSKKEA-LEAQQSLGRTVGPAGPFFPSCLPGTLLNTATYAQA 172
PPPG + A L LG V P F S G L +T +
Sbjct: 435 AAAAAAFPSLPPPPGSASLPPSGAPLGLSTFLGAAVF-RHPAFISPAFGRLFSTMAPLTS 493
Query: 173 LSHVASLKGGPLCSCCVPDPMGLSFLPTYGCQSNRTASVATLRMKAREHSEAVLQSANLL 232
S A+L P + G P R +S+A LR+KA+EH+ A L N+L
Sbjct: 494 ASTAAALLRQPTPAVEGAVASGALADPATAAADRRASSIAALRLKAKEHA-AQLTQLNIL 552
Query: 233 PSTSS 237
P TS+
Sbjct: 553 PGTST 557
>gi|55743092 aristaless-like homeobox 4 [Homo sapiens]
Length = 411
Score = 122 bits (305), Expect = 4e-28
Identities = 84/199 (42%), Positives = 106/199 (53%), Gaps = 14/199 (7%)
Query: 37 KQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRKT 96
K+RRNRTTFT QLE LE VF +THYPDV+ RE+LAM+ +LTEARVQVWFQNRRAKWRK
Sbjct: 213 KKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKR 272
Query: 97 ERGASDQEPGAKEPMAEVTPPPVRNINSPPPGDQARSKKEALEAQQSLGRTVGPAGPFFP 156
ER Q+ A P R N + + A + V P P P
Sbjct: 273 ERFGQMQQVRTHFSTAYELPLLTRAENYAQIQNPSWLGNNG--AASPVPACVVPCDP-VP 329
Query: 157 SCL------PGTLLNTAT----YAQALSHVASLKGGPLCSCCVPDPMGLSFLPTYGCQSN 206
+C+ PG+ ++ T + A SHV G L P GL+ G
Sbjct: 330 ACMSPHAHPPGSGASSVTDFLSVSGAGSHVGQTHMGSLFGAASLSP-GLNGYELNGEPDR 388
Query: 207 RTASVATLRMKAREHSEAV 225
+T+S+A LRMKA+EHS A+
Sbjct: 389 KTSSIAALRMKAKEHSAAI 407
>gi|46249382 paired-like homeobox 2a [Homo sapiens]
Length = 284
Score = 113 bits (283), Expect = 2e-25
Identities = 69/147 (46%), Positives = 84/147 (57%), Gaps = 20/147 (13%)
Query: 35 RRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWR 94
+RKQRR RTTFT QL+ LE VFA+THYPD++TREELA+KI+LTEARVQVWFQNRRAK+R
Sbjct: 87 KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFR 146
Query: 95 KTERGA------------------SDQEPGAKEPMAEVTPPPVRNINSPPPGDQARSKKE 136
K ER A S ++ +KE TP ++ PP A +
Sbjct: 147 KQERAASAKGAAGAAGAKKGEARCSSEDDDSKESTCSPTPDSTASLPPPPAPGLASPRLS 206
Query: 137 ALEAQQSLGRTVGPAGPFFPSCLPGTL 163
+LG GP GP P L G L
Sbjct: 207 PSPLPVALGSGPGP-GP-GPQPLKGAL 231
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 110 bits (275), Expect = 1e-24
Identities = 66/127 (51%), Positives = 81/127 (63%), Gaps = 16/127 (12%)
Query: 35 RRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWR 94
+RKQRR RTTFT QL+ LE VFA+THYPD++TREELA+KI+LTEARVQVWFQNRRAK+R
Sbjct: 95 KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFR 154
Query: 95 KTERGASDQEPGAKEPMAEVTPPPVRNINSPPPGDQARSKKEALEAQQSLGRTVGPAGPF 154
K ER A+ AK N +S D +R E+ EA+ + + G GP
Sbjct: 155 KQERAAAAAAAAAK------------NGSSGKKSDSSRD-DESKEAKSTDPDSTGGPGPN 201
Query: 155 ---FPSC 158
PSC
Sbjct: 202 PNPTPSC 208
>gi|113204604 aristaless-like homeobox 3 [Homo sapiens]
Length = 343
Score = 109 bits (273), Expect = 2e-24
Identities = 77/197 (39%), Positives = 102/197 (51%), Gaps = 23/197 (11%)
Query: 35 RRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWR 94
+ K+RRNRTTF+ QLE LE VF +THYPDV+ RE+LA++ +LTEARVQVWFQNRRAKWR
Sbjct: 150 KSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWR 209
Query: 95 KTERGASDQEPGAKEPMAEVTPPPVRNINSPPPGDQARSKKEALEAQQSLGRTVGPAGPF 154
K ER QE + P +I+ P D + +L A G P GP
Sbjct: 210 KRERYGKIQE--GRNPFT-----AAYDISVLPRTDSHPQLQNSLWASPGSG---SPGGPC 259
Query: 155 F--PSCLPGTLLNTATYAQALSHVASLKGGPLCSCCVPDPMGL-SFLPTYGCQS------ 205
P +P + + Y+ VA G P S P + F PT G S
Sbjct: 260 LVSPEGIPSPCM--SPYSHPHGSVAGFMGVPAPSAAHPGIYSIHGFPPTLGGHSFEPSSD 317
Query: 206 --NRTASVATLRMKARE 220
++ S+ +LR+K +E
Sbjct: 318 GDYKSPSLVSLRVKPKE 334
>gi|126116581 retina and anterior neural fold homeobox [Homo
sapiens]
Length = 346
Score = 109 bits (272), Expect = 3e-24
Identities = 76/207 (36%), Positives = 98/207 (47%), Gaps = 16/207 (7%)
Query: 35 RRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWR 94
++K RRNRTTFT QL LE F ++HYPDV++REELA K+NL E RVQVWFQNRRAKWR
Sbjct: 133 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWR 192
Query: 95 KTERGASDQEPGAKEPMAEVTPPPVRNINSP---PPGDQARSKKEALEAQQSLGRTVGPA 151
+ E+ P+ + P SP PG AL + LG +
Sbjct: 193 RQEKLEVSSMKLQDSPLLSFSRSPPSATLSPLGAGPGSGGGPAGGALPLESWLGPPLPGG 252
Query: 152 GPFFPSCLPG----TLLNTATYAQALSHVASLKG---GPLCSCCVPDPMGLSFLPTYGCQ 204
G LPG A+Y L GP P P P +G +
Sbjct: 253 GATALQSLPGFGPPAQSLPASYTPPPPPPPFLNSPPLGPGLQPLAPPPPSYPCGPGFGDK 312
Query: 205 ------SNRTASVATLRMKAREHSEAV 225
R +S+A LR+KA+EH +A+
Sbjct: 313 FPLDEADPRNSSIAALRLKAKEHIQAI 339
>gi|21361183 paired-like homeodomain transcription factor 2 isoform
c [Homo sapiens]
Length = 324
Score = 105 bits (261), Expect = 5e-23
Identities = 74/232 (31%), Positives = 110/232 (47%), Gaps = 39/232 (16%)
Query: 22 GNHSSGDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEAR 81
G + +D +++QRR RT FT QQL+ LEA F + YPD+ TREE+A+ NLTEAR
Sbjct: 76 GKNEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEAR 135
Query: 82 VQVWFQNRRAKWRKTER---------GASDQEPGAKEPMAEVTP---------------- 116
V+VWF+NRRAKWRK ER G Q G +P ++ P
Sbjct: 136 VRVWFKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQPYDDMYPGYSYNNWAAKGLTSAS 195
Query: 117 ------PPVRNINSPPPGDQARSKKEALEAQQSLGRTVGPAGPFFPSCLPGTLLNTATYA 170
P ++N P Q+ + S+ ++ P+ + +PG+ LN+
Sbjct: 196 LSTKSFPFFNSMNVNPLSSQSMFSPPNSISSMSMSSSMVPSA---VTGVPGSSLNSLNNL 252
Query: 171 QALSHVASLKGGPLCSCCVPDPMGLSFLPTYGCQSNRTASVATLRMKAREHS 222
LS + P +C P P Y + +S+A+LR+KA++HS
Sbjct: 253 NNLSSPSLNSAVPTPACPYAPP-----TPPYVYRDTCNSSLASLRLKAKQHS 299
>gi|24234711 paired-like homeodomain transcription factor 2 isoform
a [Homo sapiens]
Length = 271
Score = 105 bits (261), Expect = 5e-23
Identities = 74/232 (31%), Positives = 110/232 (47%), Gaps = 39/232 (16%)
Query: 22 GNHSSGDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEAR 81
G + +D +++QRR RT FT QQL+ LEA F + YPD+ TREE+A+ NLTEAR
Sbjct: 23 GKNEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEAR 82
Query: 82 VQVWFQNRRAKWRKTER---------GASDQEPGAKEPMAEVTP---------------- 116
V+VWF+NRRAKWRK ER G Q G +P ++ P
Sbjct: 83 VRVWFKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQPYDDMYPGYSYNNWAAKGLTSAS 142
Query: 117 ------PPVRNINSPPPGDQARSKKEALEAQQSLGRTVGPAGPFFPSCLPGTLLNTATYA 170
P ++N P Q+ + S+ ++ P+ + +PG+ LN+
Sbjct: 143 LSTKSFPFFNSMNVNPLSSQSMFSPPNSISSMSMSSSMVPSA---VTGVPGSSLNSLNNL 199
Query: 171 QALSHVASLKGGPLCSCCVPDPMGLSFLPTYGCQSNRTASVATLRMKAREHS 222
LS + P +C P P Y + +S+A+LR+KA++HS
Sbjct: 200 NNLSSPSLNSAVPTPACPYAPP-----TPPYVYRDTCNSSLASLRLKAKQHS 246
>gi|24234708 paired-like homeodomain transcription factor 2 isoform
b [Homo sapiens]
Length = 317
Score = 105 bits (261), Expect = 5e-23
Identities = 74/232 (31%), Positives = 110/232 (47%), Gaps = 39/232 (16%)
Query: 22 GNHSSGDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEAR 81
G + +D +++QRR RT FT QQL+ LEA F + YPD+ TREE+A+ NLTEAR
Sbjct: 69 GKNEDVGAEDPSKKKRQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEAR 128
Query: 82 VQVWFQNRRAKWRKTER---------GASDQEPGAKEPMAEVTP---------------- 116
V+VWF+NRRAKWRK ER G Q G +P ++ P
Sbjct: 129 VRVWFKNRRAKWRKRERNQQAELCKNGFGPQFNGLMQPYDDMYPGYSYNNWAAKGLTSAS 188
Query: 117 ------PPVRNINSPPPGDQARSKKEALEAQQSLGRTVGPAGPFFPSCLPGTLLNTATYA 170
P ++N P Q+ + S+ ++ P+ + +PG+ LN+
Sbjct: 189 LSTKSFPFFNSMNVNPLSSQSMFSPPNSISSMSMSSSMVPSA---VTGVPGSSLNSLNNL 245
Query: 171 QALSHVASLKGGPLCSCCVPDPMGLSFLPTYGCQSNRTASVATLRMKAREHS 222
LS + P +C P P Y + +S+A+LR+KA++HS
Sbjct: 246 NNLSSPSLNSAVPTPACPYAPP-----TPPYVYRDTCNSSLASLRLKAKQHS 292
>gi|4505619 paired box 7 isoform 1 [Homo sapiens]
Length = 520
Score = 104 bits (259), Expect = 9e-23
Identities = 55/100 (55%), Positives = 67/100 (67%), Gaps = 7/100 (7%)
Query: 34 LRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKW 93
L+RKQRR+RTTFT +QLE LE F +THYPD++TREELA + LTEARVQVWF NRRA+W
Sbjct: 213 LKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARW 272
Query: 94 RKTERGASDQE------PGAKEPMAEVTPPPVRNINSPPP 127
RK + GA+ PG P T PP + +S P
Sbjct: 273 RK-QAGANQLAAFNHLLPGGFPPTGMPTLPPYQLPDSTYP 311
>gi|7524359 paired box 7 isoform 2 [Homo sapiens]
Length = 518
Score = 104 bits (259), Expect = 9e-23
Identities = 55/100 (55%), Positives = 67/100 (67%), Gaps = 7/100 (7%)
Query: 34 LRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKW 93
L+RKQRR+RTTFT +QLE LE F +THYPD++TREELA + LTEARVQVWF NRRA+W
Sbjct: 211 LKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARW 270
Query: 94 RKTERGASDQE------PGAKEPMAEVTPPPVRNINSPPP 127
RK + GA+ PG P T PP + +S P
Sbjct: 271 RK-QAGANQLAAFNHLLPGGFPPTGMPTLPPYQLPDSTYP 309
>gi|207029223 paired box 7 isoform 3 [Homo sapiens]
Length = 505
Score = 104 bits (259), Expect = 9e-23
Identities = 55/100 (55%), Positives = 67/100 (67%), Gaps = 7/100 (7%)
Query: 34 LRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKW 93
L+RKQRR+RTTFT +QLE LE F +THYPD++TREELA + LTEARVQVWF NRRA+W
Sbjct: 213 LKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARW 272
Query: 94 RKTERGASDQE------PGAKEPMAEVTPPPVRNINSPPP 127
RK + GA+ PG P T PP + +S P
Sbjct: 273 RK-QAGANQLAAFNHLLPGGFPPTGMPTLPPYQLPDSTYP 311
>gi|20070107 orthodenticle homeobox 1 [Homo sapiens]
Length = 354
Score = 103 bits (256), Expect = 2e-22
Identities = 63/166 (37%), Positives = 87/166 (52%), Gaps = 12/166 (7%)
Query: 36 RKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWRK 95
RKQRR RTTFT QL+ LEA+FA+T YPD+F REE+A+KINL E+RVQVWF+NRRAK R+
Sbjct: 36 RKQRRERTTFTRSQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQ 95
Query: 96 TERGASDQEPGAKEPMAEVTPPPVRNIN--------SPPPGDQARSKKEALEAQQSLGRT 147
++ S G K A+ PVR + +PP + S + + +
Sbjct: 96 QQQSGS----GTKSRPAKKKSSPVRESSGSESSGQFTPPAVSSSASSSSSASSSSANPAA 151
Query: 148 VGPAGPFFPSCLPGTLLNTATYAQALSHVASLKGGPLCSCCVPDPM 193
AG + L+T + S + G S VP+P+
Sbjct: 152 AAAAGLGGNPVAAASSLSTPAASSIWSPASISPGSAPASVSVPEPL 197
>gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens]
Length = 217
Score = 102 bits (255), Expect = 3e-22
Identities = 47/64 (73%), Positives = 55/64 (85%)
Query: 35 RRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWR 94
+RKQRRNRTTF QL+ALE VF +THYPD F RE+LA ++NLTEARVQVWFQNRRAK+R
Sbjct: 91 KRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFR 150
Query: 95 KTER 98
+ ER
Sbjct: 151 RNER 154
>gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo
sapiens]
Length = 245
Score = 102 bits (255), Expect = 3e-22
Identities = 47/64 (73%), Positives = 55/64 (85%)
Query: 35 RRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWR 94
+RKQRRNRTTF QL+ALE VF +THYPD F RE+LA ++NLTEARVQVWFQNRRAK+R
Sbjct: 91 KRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFR 150
Query: 95 KTER 98
+ ER
Sbjct: 151 RNER 154
>gi|4826912 paired-like homeodomain 3 [Homo sapiens]
Length = 302
Score = 102 bits (253), Expect = 5e-22
Identities = 78/225 (34%), Positives = 111/225 (49%), Gaps = 29/225 (12%)
Query: 27 GDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWF 86
G +DG L++KQRR RT FT QQL+ LEA F + YPD+ TREE+A+ NLTEARV+VWF
Sbjct: 51 GSPEDGSLKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWF 110
Query: 87 QNRRAKWRKTERGASDQ--EPGAKEPMAEVTPP-----PVRNINSPPPGDQARSKKEALE 139
+NRRAKWRK ER + + P+ + PP P + + PP A
Sbjct: 111 KNRRAKWRKRERSQQAELCKGSFAAPLGGLVPPYEEVYPGYSYGNWPPKALAPPLAAKTF 170
Query: 140 AQQSLGRTVGP--AGPFF--PSCLPGTLLNTATYAQAL----SHVASLKGGP-------L 184
VGP + P F PS + +++ +A A + L GGP +
Sbjct: 171 PFAFNSVNVGPLASQPVFSPPSSIAASMVPSAAAAPGTVPGPGALQGLGGGPPGLAPAAV 230
Query: 185 CSCCVPDPMGLSFLPTYGCQSNR-------TASVATLRMKAREHS 222
S V P + S+ +S+A+LR+KA++H+
Sbjct: 231 SSGAVSCPYASAAAAAAAAASSPYVYRDPCNSSLASLRLKAKQHA 275
>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
Length = 483
Score = 102 bits (253), Expect = 5e-22
Identities = 53/90 (58%), Positives = 63/90 (70%), Gaps = 7/90 (7%)
Query: 34 LRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKW 93
L+RKQRR+RTTFT +QLE LE F +THYPD++TREELA + LTEARVQVWF NRRA+W
Sbjct: 214 LKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARW 273
Query: 94 RKTERGASDQE------PGAKEPMAEVTPP 117
RK + GA+ PG P A T P
Sbjct: 274 RK-QAGANQLMAFNHLIPGGFPPTAMPTLP 302
>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
Length = 403
Score = 102 bits (253), Expect = 5e-22
Identities = 53/90 (58%), Positives = 63/90 (70%), Gaps = 7/90 (7%)
Query: 34 LRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKW 93
L+RKQRR+RTTFT +QLE LE F +THYPD++TREELA + LTEARVQVWF NRRA+W
Sbjct: 215 LKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARW 274
Query: 94 RKTERGASDQE------PGAKEPMAEVTPP 117
RK + GA+ PG P A T P
Sbjct: 275 RK-QAGANQLMAFNHLIPGGFPPTAMPTLP 303
>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
Length = 407
Score = 102 bits (253), Expect = 5e-22
Identities = 53/90 (58%), Positives = 63/90 (70%), Gaps = 7/90 (7%)
Query: 34 LRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKW 93
L+RKQRR+RTTFT +QLE LE F +THYPD++TREELA + LTEARVQVWF NRRA+W
Sbjct: 215 LKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARW 274
Query: 94 RKTERGASDQE------PGAKEPMAEVTPP 117
RK + GA+ PG P A T P
Sbjct: 275 RK-QAGANQLMAFNHLIPGGFPPTAMPTLP 303
>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
Length = 505
Score = 102 bits (253), Expect = 5e-22
Identities = 53/90 (58%), Positives = 63/90 (70%), Gaps = 7/90 (7%)
Query: 34 LRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKW 93
L+RKQRR+RTTFT +QLE LE F +THYPD++TREELA + LTEARVQVWF NRRA+W
Sbjct: 215 LKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARW 274
Query: 94 RKTERGASDQE------PGAKEPMAEVTPP 117
RK + GA+ PG P A T P
Sbjct: 275 RK-QAGANQLMAFNHLIPGGFPPTAMPTLP 303
>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
Length = 484
Score = 102 bits (253), Expect = 5e-22
Identities = 53/90 (58%), Positives = 63/90 (70%), Gaps = 7/90 (7%)
Query: 34 LRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKW 93
L+RKQRR+RTTFT +QLE LE F +THYPD++TREELA + LTEARVQVWF NRRA+W
Sbjct: 215 LKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARW 274
Query: 94 RKTERGASDQE------PGAKEPMAEVTPP 117
RK + GA+ PG P A T P
Sbjct: 275 RK-QAGANQLMAFNHLIPGGFPPTAMPTLP 303
>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
Length = 479
Score = 102 bits (253), Expect = 5e-22
Identities = 53/90 (58%), Positives = 63/90 (70%), Gaps = 7/90 (7%)
Query: 34 LRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKW 93
L+RKQRR+RTTFT +QLE LE F +THYPD++TREELA + LTEARVQVWF NRRA+W
Sbjct: 215 LKRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARW 274
Query: 94 RKTERGASDQE------PGAKEPMAEVTPP 117
RK + GA+ PG P A T P
Sbjct: 275 RK-QAGANQLMAFNHLIPGGFPPTAMPTLP 303
>gi|152963644 paired-like homeodomain transcription factor 1 [Homo
sapiens]
Length = 314
Score = 101 bits (252), Expect = 6e-22
Identities = 79/232 (34%), Positives = 109/232 (46%), Gaps = 42/232 (18%)
Query: 22 GNHSSGDFDDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEAR 81
G G DD ++KQRR RT FT QQL+ LEA F + YPD+ REE+A+ NLTE R
Sbjct: 73 GGTGCGGADDPAKKKKQRRQRTHFTSQQLQELEATFQRNRYPDMSMREEIAVWTNLTEPR 132
Query: 82 VQVWFQNRRAKWRKTER---------GASDQEPGAKEPMAEV---------------TPP 117
V+VWF+NRRAKWRK ER G Q G +P +V P
Sbjct: 133 VRVWFKNRRAKWRKRERNQQLDLCKGGYVPQFSGLVQPYEDVYAAGYSYNNWAAKSLAPA 192
Query: 118 PVRN-----INSPPPGDQARSKKEALEAQQSLGRTVGPAGPFFPSCLPGTLLNTATYAQA 172
P+ NS P S + A S+ P+ P +PG + N+
Sbjct: 193 PLSTKSFTFFNSMSP----LSSQSMFSAPSSISSMTMPSS-MGPGAVPG-MPNS-----G 241
Query: 173 LSHVASLKGGPLCSCCVPD--PMGLSFLPTYGCQSNRTASVATLRMKAREHS 222
L+++ +L G L S P P G P + +S+A+LR+K+++HS
Sbjct: 242 LNNINNLTGSSLNSAMSPGACPYGTPASPYSVYRDTCNSSLASLRLKSKQHS 293
>gi|7706659 paired related homeobox 2 [Homo sapiens]
Length = 253
Score = 101 bits (251), Expect = 8e-22
Identities = 46/64 (71%), Positives = 55/64 (85%)
Query: 35 RRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWR 94
++KQRRNRTTF QL+ALE VF +THYPD F REELA ++NL+EARVQVWFQNRRAK+R
Sbjct: 101 KKKQRRNRTTFNSSQLQALERVFERTHYPDAFVREELARRVNLSEARVQVWFQNRRAKFR 160
Query: 95 KTER 98
+ ER
Sbjct: 161 RNER 164
>gi|87044888 short stature homeobox 2 isoform b [Homo sapiens]
Length = 190
Score = 100 bits (248), Expect = 2e-21
Identities = 70/199 (35%), Positives = 99/199 (49%), Gaps = 16/199 (8%)
Query: 30 DDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNR 89
D+G + KQRR+RT FTL+QL LE +F +THYPD F REEL+ ++ L+EARVQVWFQNR
Sbjct: 3 DEGQTKIKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNR 62
Query: 90 RAKWRKTERGA-SDQEPGAKEPMAEVTPPPVRNINSPPPGDQARSKKEALEAQQSLGRTV 148
RAK RK E GA P N+ + R + ++AQ L V
Sbjct: 63 RAKCRKQENQLHKGVLIGAASQFEACRVAPYVNVGA------LRMPFQQVQAQLQLDSAV 116
Query: 149 GPAGPFFPSCLPGTLLNTATYAQALSHVASLKGGPLCSCCVPDPMGLSFLPTYGC--QSN 206
A L A +A + A G PL + S + ++
Sbjct: 117 AHAHHHLHPHL-------AAHAPYMMFPAPPFGLPLATLAADSASAASVVAAAAAAKTTS 169
Query: 207 RTASVATLRMKAREHSEAV 225
+ +S+A LR+KA++H+ A+
Sbjct: 170 KNSSIADLRLKAKKHAAAL 188
>gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens]
Length = 326
Score = 100 bits (248), Expect = 2e-21
Identities = 48/75 (64%), Positives = 56/75 (74%)
Query: 30 DDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNR 89
D K+RR+RTTFT QLE LE VF +THYPDV+ RE+LA++ LTEARVQVWFQNR
Sbjct: 124 DSNVSSSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNR 183
Query: 90 RAKWRKTERGASDQE 104
RAKWRK ER Q+
Sbjct: 184 RAKWRKRERYGQIQQ 198
>gi|4506943 short stature homeobox isoform SHOXa [Homo sapiens]
Length = 292
Score = 98.6 bits (244), Expect = 5e-21
Identities = 73/198 (36%), Positives = 103/198 (52%), Gaps = 18/198 (9%)
Query: 30 DDGFLRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNR 89
+DG + KQRR+RT FTL+QL LE +F +THYPD F REEL+ ++ L+EARVQVWFQNR
Sbjct: 109 EDGQTKLKQRRSRTNFTLEQLNELERLFDETHYPDAFMREELSQRLGLSEARVQVWFQNR 168
Query: 90 RAKWRKTERGA-SDQEPGAKEPMAEVTPPPVRNINSPPPGDQARSKKEALEAQQSLGRTV 148
RAK RK E G + P N+ + R + ++AQ L V
Sbjct: 169 RAKCRKQENQMHKGVILGTANHLDACRVAPYVNMGA------LRMPFQQVQAQLQL-EGV 221
Query: 149 GPAGPFFPSCLPGTLLNTATYAQALSHVASLKGGPLCSCCVPDPMGLSFLPTYGCQSN-R 207
A P L A +A L G P+ S + + + + +SN +
Sbjct: 222 AHAHPHLHPHL-------AAHAPYLMFPPPPFGLPIAS--LAESASAAAVVAAAAKSNSK 272
Query: 208 TASVATLRMKAREHSEAV 225
+S+A LR+KAR+H+EA+
Sbjct: 273 NSSIADLRLKARKHAEAL 290
>gi|189083681 paired box gene 6 isoform a [Homo sapiens]
Length = 422
Score = 98.6 bits (244), Expect = 5e-21
Identities = 45/77 (58%), Positives = 58/77 (75%)
Query: 34 LRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKW 93
L+RK +RNRT+FT +Q+EALE F +THYPDVF RE LA KI+L EAR+QVWF NRRAKW
Sbjct: 206 LKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKW 265
Query: 94 RKTERGASDQEPGAKEP 110
R+ E+ + + + P
Sbjct: 266 RREEKLRNQRRQASNTP 282
>gi|4580424 paired box gene 6 isoform b [Homo sapiens]
Length = 436
Score = 98.6 bits (244), Expect = 5e-21
Identities = 45/77 (58%), Positives = 58/77 (75%)
Query: 34 LRRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKW 93
L+RK +RNRT+FT +Q+EALE F +THYPDVF RE LA KI+L EAR+QVWF NRRAKW
Sbjct: 220 LKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKW 279
Query: 94 RKTERGASDQEPGAKEP 110
R+ E+ + + + P
Sbjct: 280 RREEKLRNQRRQASNTP 296
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.128 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,892,775
Number of Sequences: 37866
Number of extensions: 605658
Number of successful extensions: 4432
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 126
Number of HSP's that attempted gapping in prelim test: 3858
Number of HSP's gapped (non-prelim): 666
length of query: 268
length of database: 18,247,518
effective HSP length: 100
effective length of query: 168
effective length of database: 14,460,918
effective search space: 2429434224
effective search space used: 2429434224
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.