Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 122937426
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|122937426 RGP1 retrograde golgi transport homolog [Homo
sapiens]
(431 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|122937426 RGP1 retrograde golgi transport homolog [Homo sapiens] 868 0.0
gi|169168278 PREDICTED: hypothetical protein [Homo sapiens] 35 0.13
gi|169167525 PREDICTED: hypothetical protein [Homo sapiens] 35 0.13
gi|161019170 mucin 5AC [Homo sapiens] 34 0.22
gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] 34 0.22
gi|169234787 hypothetical protein LOC55683 isoform a [Homo sapiens] 33 0.38
gi|21361734 hypothetical protein LOC55683 isoform b [Homo sapiens] 33 0.38
gi|253795514 choline phosphate cytidylyltransferase 1 beta isofo... 32 0.85
gi|21361202 choline phosphate cytidylyltransferase 1 beta isofor... 32 0.85
gi|56549696 E1A binding protein p400 [Homo sapiens] 32 0.85
gi|189571583 intercellular adhesion molecule 5 precursor [Homo s... 32 0.85
gi|239742747 PREDICTED: hypothetical protein XP_002342617 [Homo ... 31 1.9
gi|41350216 beta-1,4-mannosyltransferase [Homo sapiens] 31 1.9
gi|167900478 POU class 2 associating factor 1 [Homo sapiens] 31 1.9
gi|27735129 hypothetical protein LOC148345 [Homo sapiens] 31 2.5
gi|226371777 sex hormone-binding globulin isoform 3 precursor [H... 30 3.2
gi|7382460 sex hormone-binding globulin isoform 1 precursor [Hom... 30 3.2
gi|226371613 sex hormone-binding globulin isoform 4 precursor [H... 30 3.2
gi|83367077 mucin 16 [Homo sapiens] 30 4.2
gi|209693464 ubiquitin related modifier 1 homolog isoform b [Hom... 30 4.2
gi|155029550 chromosome 9 open reading frame 79 [Homo sapiens] 30 4.2
gi|37655167 ring finger protein 135 isoform 1 [Homo sapiens] 30 5.5
gi|239755575 PREDICTED: similar to mannosyltransferase, partial ... 30 5.5
gi|239752523 PREDICTED: intestinal mucin-like, partial [Homo sap... 30 5.5
gi|118498345 AT-binding transcription factor 1 [Homo sapiens] 30 5.5
gi|239745863 PREDICTED: hypothetical protein [Homo sapiens] 29 7.2
gi|239740965 PREDICTED: hypothetical protein XP_002344115 [Homo ... 29 7.2
gi|11496882 ELK4 protein isoform b [Homo sapiens] 29 7.2
gi|41872448 ELK4 protein isoform a [Homo sapiens] 29 7.2
gi|62632744 asparagine-linked glycosylation 1-like [Homo sapiens] 29 9.4
>gi|122937426 RGP1 retrograde golgi transport homolog [Homo sapiens]
Length = 431
Score = 868 bits (2244), Expect = 0.0
Identities = 431/431 (100%), Positives = 431/431 (100%)
Query: 1 MTRALSGLACRALPAGRDSAEGLGVPIPSVDYARSDSGAAMIEVVAELSRGPVFLAGEAL 60
MTRALSGLACRALPAGRDSAEGLGVPIPSVDYARSDSGAAMIEVVAELSRGPVFLAGEAL
Sbjct: 1 MTRALSGLACRALPAGRDSAEGLGVPIPSVDYARSDSGAAMIEVVAELSRGPVFLAGEAL 60
Query: 61 ECVVTVTNPLPPTATSASSEALAWASAQIHCQFHASESRVALPPPDSSQPDVQPDSQTVF 120
ECVVTVTNPLPPTATSASSEALAWASAQIHCQFHASESRVALPPPDSSQPDVQPDSQTVF
Sbjct: 61 ECVVTVTNPLPPTATSASSEALAWASAQIHCQFHASESRVALPPPDSSQPDVQPDSQTVF 120
Query: 121 LPHRGERGQCILSTPPKILFCDLRLDPGESKSYSYSEVLPIEGPPSFRGQSVKYVYKLTI 180
LPHRGERGQCILSTPPKILFCDLRLDPGESKSYSYSEVLPIEGPPSFRGQSVKYVYKLTI
Sbjct: 121 LPHRGERGQCILSTPPKILFCDLRLDPGESKSYSYSEVLPIEGPPSFRGQSVKYVYKLTI 180
Query: 181 GCQRVNSPITLLRVPLRVLVLTGLQDVRFPQDEAVAPSSPFLEEDEGGKKDSWLAELAGE 240
GCQRVNSPITLLRVPLRVLVLTGLQDVRFPQDEAVAPSSPFLEEDEGGKKDSWLAELAGE
Sbjct: 181 GCQRVNSPITLLRVPLRVLVLTGLQDVRFPQDEAVAPSSPFLEEDEGGKKDSWLAELAGE 240
Query: 241 RLMAATSCRSLHLYNISDGRGKVGTFGIFKSVYRLGEDVVGTLNLGEGTVACLQFSVSLQ 300
RLMAATSCRSLHLYNISDGRGKVGTFGIFKSVYRLGEDVVGTLNLGEGTVACLQFSVSLQ
Sbjct: 241 RLMAATSCRSLHLYNISDGRGKVGTFGIFKSVYRLGEDVVGTLNLGEGTVACLQFSVSLQ 300
Query: 301 TEERVQPEYQRRRGAGGVPSVSHVTHARHQESCLHTTRTSFSLPIPLSSTPGFCTAIVSL 360
TEERVQPEYQRRRGAGGVPSVSHVTHARHQESCLHTTRTSFSLPIPLSSTPGFCTAIVSL
Sbjct: 301 TEERVQPEYQRRRGAGGVPSVSHVTHARHQESCLHTTRTSFSLPIPLSSTPGFCTAIVSL 360
Query: 361 KWRLHFEFVTSREPGLVLLPPVEQPEPTTWTGPEQVPVDTFSWDLPIKVLPTSPTLASYA 420
KWRLHFEFVTSREPGLVLLPPVEQPEPTTWTGPEQVPVDTFSWDLPIKVLPTSPTLASYA
Sbjct: 361 KWRLHFEFVTSREPGLVLLPPVEQPEPTTWTGPEQVPVDTFSWDLPIKVLPTSPTLASYA 420
Query: 421 APGPSTSTITI 431
APGPSTSTITI
Sbjct: 421 APGPSTSTITI 431
>gi|169168278 PREDICTED: hypothetical protein [Homo sapiens]
Length = 107
Score = 35.0 bits (79), Expect = 0.13
Identities = 19/66 (28%), Positives = 29/66 (43%)
Query: 69 PLPPTATSASSEALAWASAQIHCQFHASESRVALPPPDSSQPDVQPDSQTVFLPHRGERG 128
P P ++ S+ + ASA +H Q + R PPP S P+ P + LP
Sbjct: 37 PHPMHSSGDGSQRILSASADLHRQRRSPARRALRPPPPFSSPNKHPSPEVTSLPSPPTPP 96
Query: 129 QCILST 134
C +S+
Sbjct: 97 SCSVSS 102
>gi|169167525 PREDICTED: hypothetical protein [Homo sapiens]
Length = 107
Score = 35.0 bits (79), Expect = 0.13
Identities = 19/66 (28%), Positives = 29/66 (43%)
Query: 69 PLPPTATSASSEALAWASAQIHCQFHASESRVALPPPDSSQPDVQPDSQTVFLPHRGERG 128
P P ++ S+ + ASA +H Q + R PPP S P+ P + LP
Sbjct: 37 PHPMHSSGDGSQRILSASADLHRQRRSPARRALRPPPPFSSPNKHPSPEVTSLPSPPTPP 96
Query: 129 QCILST 134
C +S+
Sbjct: 97 SCSVSS 102
>gi|161019170 mucin 5AC [Homo sapiens]
Length = 6207
Score = 34.3 bits (77), Expect = 0.22
Identities = 35/102 (34%), Positives = 44/102 (43%), Gaps = 11/102 (10%)
Query: 336 TTRTSFSLPIPLSSTPGFC-TAIVSLKWRLHFEFVTSREPGLVLLPPVEQPEPTTWT--- 391
TTR + S+ P SSTPG T V F S PG PPV TT T
Sbjct: 4371 TTRATGSVATP-SSTPGTAHTTKVPTTTTTGFTVTPSSSPGTARTPPVWISTTTTPTTSG 4429
Query: 392 ---GPEQVPVDTFSWDLPIKVLPTSPTLASYAAPGPSTSTIT 430
P VP T + P + T+ T+A+ + PS+ST T
Sbjct: 4430 STVTPSSVPGTTHT---PTVLTTTTTTVATGSMATPSSSTQT 4468
Score = 33.1 bits (74), Expect = 0.50
Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 11/102 (10%)
Query: 336 TTRTSFSLPIPLSSTPGFC-TAIVSLKWRLHFEFVTSREPGLVLLPPVEQPEPTTWT--- 391
TTR + S+ P SSTPG T V F S PG L PPV TT T
Sbjct: 3869 TTRATGSVATP-SSTPGTAHTTKVPTTTTTGFTATPSSSPGTALTPPVWISTTTTPTTRG 3927
Query: 392 ---GPEQVPVDTFSWDLPIKVLPTSPTLASYAAPGPSTSTIT 430
P +P T + + + T+ T+A+ + PS+ST T
Sbjct: 3928 STVTPSSIPGTTHTATV---LTTTTTTVATGSMATPSSSTQT 3966
Score = 30.4 bits (67), Expect = 3.2
Identities = 33/102 (32%), Positives = 44/102 (43%), Gaps = 11/102 (10%)
Query: 336 TTRTSFSLPIPLSSTPGFC-TAIVSLKWRLHFEFVTSREPGLVLLPPVEQPEPTTWT--- 391
TT + S+ P SSTPG T V F S PG L PPV TT T
Sbjct: 2722 TTGATGSVATP-SSTPGTAHTTKVPTTTTTGFTATPSSSPGTALTPPVWISTTTTPTTRG 2780
Query: 392 ---GPEQVPVDTFSWDLPIKVLPTSPTLASYAAPGPSTSTIT 430
P +P T + + + T+ T+A+ + PS+ST T
Sbjct: 2781 STVTPSSIPGTTHTATV---LTTTTTTVATGSMATPSSSTQT 2819
>gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]
Length = 5765
Score = 34.3 bits (77), Expect = 0.22
Identities = 35/102 (34%), Positives = 44/102 (43%), Gaps = 11/102 (10%)
Query: 336 TTRTSFSLPIPLSSTPGFC-TAIVSLKWRLHFEFVTSREPGLVLLPPVEQPEPTTWT--- 391
TTR + S+ P SSTPG T V F S PG PPV TT T
Sbjct: 3846 TTRATGSVATP-SSTPGTAHTTKVPTTTTTGFTVTPSSSPGTARTPPVWISTTTTPTTSG 3904
Query: 392 ---GPEQVPVDTFSWDLPIKVLPTSPTLASYAAPGPSTSTIT 430
P VP T + P + T+ T+A+ + PS+ST T
Sbjct: 3905 STVTPSSVPGTTHT---PTVLTTTTTTVATGSMATPSSSTQT 3943
Score = 33.1 bits (74), Expect = 0.50
Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 11/102 (10%)
Query: 336 TTRTSFSLPIPLSSTPGFC-TAIVSLKWRLHFEFVTSREPGLVLLPPVEQPEPTTWT--- 391
TTR + S+ P SSTPG T V F S PG L PPV TT T
Sbjct: 3289 TTRATGSVATP-SSTPGTAHTTKVPTTTTTGFTATPSSSPGTALTPPVWISTTTTPTTRG 3347
Query: 392 ---GPEQVPVDTFSWDLPIKVLPTSPTLASYAAPGPSTSTIT 430
P +P T + + + T+ T+A+ + PS+ST T
Sbjct: 3348 STVTPSSIPGTTHTATV---LTTTTTTVATGSMATPSSSTQT 3386
Score = 30.4 bits (67), Expect = 3.2
Identities = 33/102 (32%), Positives = 44/102 (43%), Gaps = 11/102 (10%)
Query: 336 TTRTSFSLPIPLSSTPGFC-TAIVSLKWRLHFEFVTSREPGLVLLPPVEQPEPTTWT--- 391
TT + S+ P SSTPG T V F S PG L PPV TT T
Sbjct: 2032 TTGATGSVATP-SSTPGTAHTTKVPTTTTTGFTATPSSSPGTALTPPVWISTTTTPTTRG 2090
Query: 392 ---GPEQVPVDTFSWDLPIKVLPTSPTLASYAAPGPSTSTIT 430
P +P T + + + T+ T+A+ + PS+ST T
Sbjct: 2091 STVTPSSIPGTTHTATV---LTTTTTTVATGSMATPSSSTQT 2129
Score = 29.6 bits (65), Expect = 5.5
Identities = 36/108 (33%), Positives = 42/108 (38%), Gaps = 20/108 (18%)
Query: 336 TTRTSFSLPIPLSSTPGFC-TAIVSLKWRLHFEFVTSREPGLVLLPPV---EQPEPTTWT 391
TT + S+ P SSTPG T V F S PG L PPV PTT T
Sbjct: 4574 TTGATGSVATP-SSTPGTAHTTKVPTTTTTGFTATPSSSPGTALTPPVWISTTTTPTTTT 4632
Query: 392 --------GPEQVPVDTFSWDLPIKVLPTSPT---LASYAAPGPSTST 428
P +P T + +VL T+ T S A P ST T
Sbjct: 4633 PTTSGSTVTPSSIPGTTHT----ARVLTTTTTTVATGSMATPSSSTQT 4676
>gi|169234787 hypothetical protein LOC55683 isoform a [Homo sapiens]
Length = 878
Score = 33.5 bits (75), Expect = 0.38
Identities = 42/157 (26%), Positives = 66/157 (42%), Gaps = 17/157 (10%)
Query: 282 TLNLGEGTVACLQFSVSLQTEERVQPEYQRRRGAGGVPS--VSHVTHARHQESCLHTTRT 339
T+ LG+ + + + L T + E GGV + V V + S LHT ++
Sbjct: 652 TMTLGQASAGAKELTGLLTTAKSSSSE-------GGVSASPVPSVVSSSTAPSALHTLQS 704
Query: 340 SFSLPIPLSSTPGFCTAIVSLKWRLHFEF--VTSREPGLVLLP-PVEQPEPTTWTGP--- 393
P SS PG T+ SL L F ++S+ GL P P P+ T+ P
Sbjct: 705 RLVATSPGSSLPG-ATSASSLLQGLSFSLQDISSKTSGLPANPSPGPAPQATSVKLPTPM 763
Query: 394 EQVPVDTFSWDLPIKVLPTSPTLASY-AAPGPSTSTI 429
+ + T ++ +P + TL+S A PG + I
Sbjct: 764 QSLGAITTGTSTIVRTIPVATTLSSLGATPGGKPTAI 800
>gi|21361734 hypothetical protein LOC55683 isoform b [Homo sapiens]
Length = 791
Score = 33.5 bits (75), Expect = 0.38
Identities = 42/157 (26%), Positives = 66/157 (42%), Gaps = 17/157 (10%)
Query: 282 TLNLGEGTVACLQFSVSLQTEERVQPEYQRRRGAGGVPS--VSHVTHARHQESCLHTTRT 339
T+ LG+ + + + L T + E GGV + V V + S LHT ++
Sbjct: 565 TMTLGQASAGAKELTGLLTTAKSSSSE-------GGVSASPVPSVVSSSTAPSALHTLQS 617
Query: 340 SFSLPIPLSSTPGFCTAIVSLKWRLHFEF--VTSREPGLVLLP-PVEQPEPTTWTGP--- 393
P SS PG T+ SL L F ++S+ GL P P P+ T+ P
Sbjct: 618 RLVATSPGSSLPG-ATSASSLLQGLSFSLQDISSKTSGLPANPSPGPAPQATSVKLPTPM 676
Query: 394 EQVPVDTFSWDLPIKVLPTSPTLASY-AAPGPSTSTI 429
+ + T ++ +P + TL+S A PG + I
Sbjct: 677 QSLGAITTGTSTIVRTIPVATTLSSLGATPGGKPTAI 713
>gi|253795514 choline phosphate cytidylyltransferase 1 beta isoform
2 [Homo sapiens]
Length = 351
Score = 32.3 bits (72), Expect = 0.85
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 362 WRLHFEFVTSREPGLVLLPPVEQP--EPTTWTGPEQVPVDTFSWDLPIKVLPTSPTLASY 419
W+ F+ +SR L L P + P PT P + P TFSW LP+K P S A+
Sbjct: 281 WKQMFQERSSRM--LQALSPKQSPVSSPTRSRSPSRSPSPTFSW-LPLKTSPPSSPKAAS 337
Query: 420 AA 421
A+
Sbjct: 338 AS 339
>gi|21361202 choline phosphate cytidylyltransferase 1 beta isoform 1
[Homo sapiens]
Length = 369
Score = 32.3 bits (72), Expect = 0.85
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 362 WRLHFEFVTSREPGLVLLPPVEQP--EPTTWTGPEQVPVDTFSWDLPIKVLPTSPTLASY 419
W+ F+ +SR L L P + P PT P + P TFSW LP+K P S A+
Sbjct: 299 WKQMFQERSSRM--LQALSPKQSPVSSPTRSRSPSRSPSPTFSW-LPLKTSPPSSPKAAS 355
Query: 420 AA 421
A+
Sbjct: 356 AS 357
>gi|56549696 E1A binding protein p400 [Homo sapiens]
Length = 3122
Score = 32.3 bits (72), Expect = 0.85
Identities = 23/79 (29%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 61 ECVVTVTNPLPPT-ATSASSEALAWASAQIHCQFHASESRVALPPPDSSQPDVQPDSQTV 119
E + PLPP S +E +A + Q A + VA PPP QP P
Sbjct: 2463 ESGINYDKPLPPIQVASLRAERIAKEKKALADQQKAQQPAVAQPPPPQPQPPPPPQQPPP 2522
Query: 120 FLPHRGERGQCILSTPPKI 138
LP G + PP +
Sbjct: 2523 PLPQPQAAGSQPPAGPPAV 2541
>gi|189571583 intercellular adhesion molecule 5 precursor [Homo
sapiens]
Length = 924
Score = 32.3 bits (72), Expect = 0.85
Identities = 32/102 (31%), Positives = 39/102 (38%), Gaps = 26/102 (25%)
Query: 21 EGLGVPIPSVDYARSDSGAAMIEVVAELSRGPVFLA-------------GEALECVVTVT 67
E G P PSV ARSD GA V+A GPV A GEA++ V
Sbjct: 432 EARGNPEPSVHCARSDGGA----VLALGLLGPVTRALSGTYRCKAANDQGEAVKDVTLTV 487
Query: 68 NPLPPTATSASSEALAW---ASAQIHCQFHASESRVALPPPD 106
P + E + W A + C H +PPPD
Sbjct: 488 EYAPALDSVGCPERITWLEGTEASLSCVAH------GVPPPD 523
>gi|239742747 PREDICTED: hypothetical protein XP_002342617 [Homo
sapiens]
Length = 283
Score = 31.2 bits (69), Expect = 1.9
Identities = 19/76 (25%), Positives = 33/76 (43%)
Query: 65 TVTNPLPPTATSASSEALAWASAQIHCQFHASESRVALPPPDSSQPDVQPDSQTVFLPHR 124
TV + + P A ++++ L W + + CQ ++ L P + D Q + V +
Sbjct: 26 TVRSVIHPKAQASTATYLDWDTKEESCQVRGEQNYQGLHPISTCSRDRQTLADAVASSPK 85
Query: 125 GERGQCILSTPPKILF 140
G C +PPK F
Sbjct: 86 GRGLCCARRSPPKRCF 101
>gi|41350216 beta-1,4-mannosyltransferase [Homo sapiens]
Length = 464
Score = 31.2 bits (69), Expect = 1.9
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 333 CLHTTRTSFSLPIPLSSTPGFCTAIVSLKWRLHFEFVTSREPGLV 377
CLHT+ + LP+ + G C + ++ ++ E V E GLV
Sbjct: 365 CLHTSSSGLDLPMKVVDMFGCCLPVCAVNFKCLHELVKHEENGLV 409
>gi|167900478 POU class 2 associating factor 1 [Homo sapiens]
Length = 256
Score = 31.2 bits (69), Expect = 1.9
Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 9/46 (19%)
Query: 380 PPVEQPEPTTWTGPEQVPVDTFSWDLPIKVLPTSPTLASYAAPGPS 425
PP+E PE Q P+ F W P+ LPTS Y P P+
Sbjct: 163 PPLEGPE-------HQAPLTYFPWPQPLSTLPTS--TLQYQPPAPA 199
>gi|27735129 hypothetical protein LOC148345 [Homo sapiens]
Length = 656
Score = 30.8 bits (68), Expect = 2.5
Identities = 31/111 (27%), Positives = 43/111 (38%), Gaps = 26/111 (23%)
Query: 321 VSHVTHARHQESCLHTTRTSFSLPIPLSSTPGFCTAIVSLKWRLHFEFVTSRE------P 374
VSH + QE+C T + P + PG R H + +S P
Sbjct: 438 VSHRSPGEPQETCSGT-----EVERPRQTGPGLPREGA----RGHMDLSSSEPSQDIEGP 488
Query: 375 GLVLLPP---------VEQPEPTTW--TGPEQVPVDTFSWDLPIKVLPTSP 414
GL +LP V QP+P+ W +GPE + P+ VLP P
Sbjct: 489 GLSILPARDATFSTPSVRQPDPSAWLSSGPELTGMPRVRLAAPLAVLPMEP 539
>gi|226371777 sex hormone-binding globulin isoform 3 precursor [Homo
sapiens]
Length = 293
Score = 30.4 bits (67), Expect = 3.2
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 183 QRVNSPITLLRVPLRVLVLTGLQDVRFPQDEAVAPSSPFLEEDEGGKKDSWLAELAGERL 242
++V+ P+T R P+ + L GL FP P P L D ++DSWL + A
Sbjct: 154 RQVSGPLTSKRHPIMRIALGGLL---FPASNLRLPLVPAL--DGCLRRDSWLDKQAEISA 208
Query: 243 MAATSCRS 250
A TS RS
Sbjct: 209 SAPTSLRS 216
>gi|7382460 sex hormone-binding globulin isoform 1 precursor [Homo
sapiens]
Length = 402
Score = 30.4 bits (67), Expect = 3.2
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 183 QRVNSPITLLRVPLRVLVLTGLQDVRFPQDEAVAPSSPFLEEDEGGKKDSWLAELAGERL 242
++V+ P+T R P+ + L GL FP P P L D ++DSWL + A
Sbjct: 154 RQVSGPLTSKRHPIMRIALGGLL---FPASNLRLPLVPAL--DGCLRRDSWLDKQAEISA 208
Query: 243 MAATSCRS 250
A TS RS
Sbjct: 209 SAPTSLRS 216
>gi|226371613 sex hormone-binding globulin isoform 4 precursor [Homo
sapiens]
Length = 287
Score = 30.4 bits (67), Expect = 3.2
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 183 QRVNSPITLLRVPLRVLVLTGLQDVRFPQDEAVAPSSPFLEEDEGGKKDSWLAELAGERL 242
++V+ P+T R P+ + L GL FP P P L D ++DSWL + A
Sbjct: 154 RQVSGPLTSKRHPIMRIALGGLL---FPASNLRLPLVPAL--DGCLRRDSWLDKQAEISA 208
Query: 243 MAATSCRS 250
A TS RS
Sbjct: 209 SAPTSLRS 216
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 30.0 bits (66), Expect = 4.2
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 370 TSREPGLVLLPPVEQPEPTTWTGPEQVPVDTFSWDLPIKVLPTS 413
TS L+ P + P P + T P+ +P S LP+ LPTS
Sbjct: 5332 TSSVSSLMSSPAMTSPSPVSSTSPQSIP----SSPLPVTALPTS 5371
Score = 29.3 bits (64), Expect = 7.2
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 16/101 (15%)
Query: 336 TTRTSFSLPIPLSSTPGFCTAIVSLKWRLHFEFVTSREPGLVLLPPVEQPEPTTWTGPEQ 395
T++ +F+L P +S+ ++ + ++ H E T + PE +WT P
Sbjct: 6746 TSQGTFTLDTPTTSSRAGTHSMATQEFP-HSEMTTVMN---------KDPEILSWTIPPS 6795
Query: 396 VPVDTFSWDLPIKVLPTSPTLAS------YAAPGPSTSTIT 430
+ +FS L TSP ++S + P P TS +T
Sbjct: 6796 IEKTSFSSSLMPSPAMTSPPVSSTLPKTIHTTPSPMTSLLT 6836
>gi|209693464 ubiquitin related modifier 1 homolog isoform b [Homo
sapiens]
Length = 146
Score = 30.0 bits (66), Expect = 4.2
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 15/80 (18%)
Query: 61 ECVVTVTNPLPPTATS-ASSEALAWASAQIHCQFHASESRVALPPPDSSQPDVQPDSQTV 119
E +V+ +PP A + A+S WAS Q H ++ + PPP SS P + +
Sbjct: 77 ELLVSTLGDIPPPAPALAASVGKRWASPQAHIEW------LGNPPPHSS-----PTLRLL 125
Query: 120 FLPHRGERGQCIL---STPP 136
P GE G STPP
Sbjct: 126 ESPTPGEEGMGSWGHGSTPP 145
>gi|155029550 chromosome 9 open reading frame 79 [Homo sapiens]
Length = 1445
Score = 30.0 bits (66), Expect = 4.2
Identities = 40/151 (26%), Positives = 58/151 (38%), Gaps = 16/151 (10%)
Query: 3 RALSGLACRALPAGRDSAEGLGVPIPSVDYARSDSGAAMIEVV-AELS--RGPVFLAGEA 59
R L+G LP G D + P+P+ A G M + A LS P LA
Sbjct: 145 RKLAGEGSSHLPLGGDPLGDVCKPVPAK--AHQPHGKCMQDPSPASLSPPAPPAPLASTL 202
Query: 60 LECVVTVTNPLPPTATSASSEA------LAWASAQIHCQFHASES-----RVALPPPDSS 108
+T + P P +T ++S L + Q H F S + PPPDSS
Sbjct: 203 SPGPMTFSEPFGPHSTLSASGPPEPLLPLKCPATQPHVVFPPSPQPHGPLASSPPPPDSS 262
Query: 109 QPDVQPDSQTVFLPHRGERGQCILSTPPKIL 139
+Q S T +P +L P +++
Sbjct: 263 LAGLQCGSTTCPVPQSSPLHNQVLPPPTRVI 293
>gi|37655167 ring finger protein 135 isoform 1 [Homo sapiens]
Length = 432
Score = 29.6 bits (65), Expect = 5.5
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 55 LAGEALECVVTVTNPLPPTATSASSEALAWASAQIHCQFHASESRVALPPPDSSQPDVQP 114
+ GE LE + + PLP + A A +A IH F+ +L +V
Sbjct: 225 MQGELLEAPSSSSCPLPDQSHPALRRASRFAQWAIHPTFNLKSLSCSL--------EVSK 276
Query: 115 DSQTVFLPHRGE--RGQCILSTPPKILFCDLRLDPGE 149
DS+TV + HR + R C + ++L C L G+
Sbjct: 277 DSRTVTVSHRPQPYRWSCERFSTSQVL-CSQALSSGK 312
>gi|239755575 PREDICTED: similar to mannosyltransferase, partial
[Homo sapiens]
Length = 256
Score = 29.6 bits (65), Expect = 5.5
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 333 CLHTTRTSFSLPIPLSSTPGFCTAIVSLKWRLHFEFVTSREPGLV 377
CLHT+ + LP+ + G C ++ ++ E V E GLV
Sbjct: 157 CLHTSSSGLDLPMKVVDMFGCCLPACAVNFKCLHELVKHEENGLV 201
>gi|239752523 PREDICTED: intestinal mucin-like, partial [Homo
sapiens]
Length = 514
Score = 29.6 bits (65), Expect = 5.5
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 336 TTRTSFSLPIPLSSTP-GFCTAIVSL-KWRLHFEFVTSREPGLVLLPPVEQPEPTTWTGP 393
TT + + PI S TP T++ ++ W ++S ++ PV E TT
Sbjct: 420 TTAMTSTPPITSSITPTNTVTSMTTMTSWPTATNTLSSLTTNILSSTPVPSTERTTSHTT 479
Query: 394 EQVPVDTFSWDLPIKVLPTSPTLASYAAPGPSTSTI 429
PV T LP + ++PT A P STST+
Sbjct: 480 NINPVSTLVTTLPTTITRSTPT-AETTYPISSTSTV 514
>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
Length = 3703
Score = 29.6 bits (65), Expect = 5.5
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 25/83 (30%)
Query: 349 STPGFCTAIVSLKWRLHFEFVTSREPGLVLLPPVEQPEPTTWTGPEQVPVDTFSWDLPIK 408
S PGF + +L TS +P L+ LP P P LP
Sbjct: 3133 SLPGFTPSNTAL---------TSPKPNLMGLPSTTVPSP----------------GLPTS 3167
Query: 409 VLPTSPTLASYAAPGPSTSTITI 431
LP P+ AS ++P P+ +T+ +
Sbjct: 3168 GLPNKPSSASLSSPTPAQATMAM 3190
>gi|239745863 PREDICTED: hypothetical protein [Homo sapiens]
Length = 208
Score = 29.3 bits (64), Expect = 7.2
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 11/60 (18%)
Query: 382 VEQPEPTTWTGPEQVPVDTFSWDLPIKV--LPTSPTLASY---------AAPGPSTSTIT 430
V+ P P GP + +TF W + + LP P AS+ A+ GP T +T
Sbjct: 104 VQTPHPPNLDGPRRANRNTFLWTCHVGIPDLPALPAPASFLGTQLTLKKASDGPRTEKVT 163
>gi|239740965 PREDICTED: hypothetical protein XP_002344115 [Homo
sapiens]
Length = 166
Score = 29.3 bits (64), Expect = 7.2
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 11/60 (18%)
Query: 382 VEQPEPTTWTGPEQVPVDTFSWDLPIKV--LPTSPTLASY---------AAPGPSTSTIT 430
V+ P P GP + +TF W + + LP P AS+ A+ GP T +T
Sbjct: 62 VQTPHPPNLDGPRRANRNTFLWTCHVGIPDLPALPAPASFLGTQLTLKKASDGPRTEKVT 121
>gi|11496882 ELK4 protein isoform b [Homo sapiens]
Length = 405
Score = 29.3 bits (64), Expect = 7.2
Identities = 31/102 (30%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
Query: 26 PIPSV-DYARSDSGAAMIE-VVAELSRGPVFLAG-----EALECVVTVTNPLPPTATSAS 78
P PSV + + S +E V A +S GP +ALE +V+ P TSAS
Sbjct: 184 PTPSVIKFVTTPSKKPPVEPVAATISIGPSISPSSEETIQALETLVSPKLPSLEAPTSAS 243
Query: 79 SEALAWASAQIHCQFHASESRVALP-PPDSSQPDVQPDSQTV 119
+ A+A+ + P PP SS PD+ D +V
Sbjct: 244 NVMTAFATTPPISSIPPLQEPPRTPSPPLSSHPDIDTDIDSV 285
>gi|41872448 ELK4 protein isoform a [Homo sapiens]
Length = 431
Score = 29.3 bits (64), Expect = 7.2
Identities = 31/102 (30%), Positives = 44/102 (43%), Gaps = 8/102 (7%)
Query: 26 PIPSV-DYARSDSGAAMIE-VVAELSRGPVFLAG-----EALECVVTVTNPLPPTATSAS 78
P PSV + + S +E V A +S GP +ALE +V+ P TSAS
Sbjct: 184 PTPSVIKFVTTPSKKPPVEPVAATISIGPSISPSSEETIQALETLVSPKLPSLEAPTSAS 243
Query: 79 SEALAWASAQIHCQFHASESRVALP-PPDSSQPDVQPDSQTV 119
+ A+A+ + P PP SS PD+ D +V
Sbjct: 244 NVMTAFATTPPISSIPPLQEPPRTPSPPLSSHPDIDTDIDSV 285
>gi|62632744 asparagine-linked glycosylation 1-like [Homo sapiens]
Length = 187
Score = 28.9 bits (63), Expect = 9.4
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 333 CLHTTRTSFSLPIPLSSTPGFCTAIVSLKWRLHFEFVTSREPGLV 377
CLH + + LP+ + G C + ++ ++ E V E GLV
Sbjct: 61 CLHMSSSGLDLPMKVVDMFGCCLPVCAVNFKCLHELVKHEENGLV 105
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,823,600
Number of Sequences: 37866
Number of extensions: 1029395
Number of successful extensions: 3044
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 2992
Number of HSP's gapped (non-prelim): 80
length of query: 431
length of database: 18,247,518
effective HSP length: 105
effective length of query: 326
effective length of database: 14,271,588
effective search space: 4652537688
effective search space used: 4652537688
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.