Guide to the Human Genome
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Name: LOC100292052 Sequence: fasta or formatted (1119aa) NCBI GI: 239757212
Description:

PREDICTED: similar to hCG1773661

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         55           1
 C cysteine            7.3         82           1
 D aspartate           0.8          9           1
 E glutamate           9.0        101           2
 F phenylalanine       5.3         59           2
 G glycine             5.6         63           1
 H histidine           8.3         93           1
 I isoleucine          5.5         62           2
 K lysine             18.9        211           3
 L leucine             4.1         46           2
 M methionine          0.6          7           1
 N asparagine          2.5         28           2
 P proline             3.1         35           1
 Q glutamine           1.5         17           1
 R arginine            3.4         38           2
 S serine              6.8         76           3
 T threonine           6.3         71           1
 V valine              2.2         25           2
 W tryptophan          0.5          6           1
 Y tyrosine            3.1         35           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1773661 
LOC100287226          1.000   PREDICTED: similar to hCG1773661 
LOC100287226          1.000   PREDICTED: hypothetical protein XP_002343677 
ZNF91                 0.623   zinc finger protein 91 
ZNF208                0.605   zinc finger protein 208 
ZNF99                 0.600   zinc finger protein 99 
ZNF721                0.444   zinc finger protein 721 
ZNF107                0.410   zinc finger protein 107 
ZNF107                0.410   zinc finger protein 107 
ZNF845                0.400   zinc finger protein 845 
ZNF43                 0.383   zinc finger protein 43 
ZFP62                 0.375   zinc finger protein 62 homolog 
ZNF836                0.371   zinc finger protein 836 
ZNF493                0.370   zinc finger protein 493 isoform 1 
ZNF493                0.370   zinc finger protein 493 isoform 3 
ZNF726                0.346   PREDICTED: zinc finger protein 726 
ZNF726                0.346   PREDICTED: zinc finger protein 726 
ZNF726                0.346   PREDICTED: zinc finger protein 726 
ZNF808                0.339   zinc finger protein 808 
ZNF841                0.332   zinc finger protein 841 
ZNF594                0.319   zinc finger protein 594 
ZNF658                0.316   zinc finger protein 658 
ZNF347                0.316   zinc finger protein 347 
ZNF780B               0.315   zinc finger protein 780B 
ZNF160                0.315   zinc finger protein 160 
ZNF160                0.315   zinc finger protein 160 
ZNF160                0.315   zinc finger protein 160 
ZNF728                0.315   PREDICTED: zinc finger protein 728 
ZNF728                0.314   PREDICTED: zinc finger protein 728 
ZNF728                0.314   PREDICTED: zinc finger protein 728 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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