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Search of human proteins with 31657117
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|31657117 SMEK homolog 1, suppressor of mek1 [Homo sapiens]
(820 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|31657117 SMEK homolog 1, suppressor of mek1 [Homo sapiens] 1630 0.0
gi|171916095 SMEK homolog 2, suppressor of mek1 isoform 1 [Homo ... 1201 0.0
gi|39930397 SMEK homolog 2, suppressor of mek1 isoform 2 [Homo s... 1109 0.0
gi|55956788 nucleolin [Homo sapiens] 55 3e-07
gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap... 44 8e-04
gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap... 44 8e-04
gi|9257192 adducin 2 isoform a [Homo sapiens] 40 0.009
gi|63054872 ladybird homeobox 1 [Homo sapiens] 40 0.009
gi|20070284 endomucin isoform 1 [Homo sapiens] 40 0.011
gi|145580615 KRI1 homolog [Homo sapiens] 40 0.011
gi|9257180 adducin 2 isoform c [Homo sapiens] 40 0.011
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 40 0.011
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 39 0.015
gi|21071067 TBP-associated factor 5 [Homo sapiens] 39 0.015
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 39 0.015
gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens] 39 0.026
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 37 0.057
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 37 0.057
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 37 0.057
gi|11119430 testis-specific kinase substrate [Homo sapiens] 37 0.057
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 37 0.057
gi|171460948 TSC22 domain family, member 1 isoform 1 [Homo sapiens] 37 0.057
gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens] 37 0.074
gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens] 37 0.097
gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-li... 37 0.097
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 37 0.097
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 37 0.097
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 37 0.097
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 37 0.097
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 37 0.097
>gi|31657117 SMEK homolog 1, suppressor of mek1 [Homo sapiens]
Length = 820
Score = 1630 bits (4221), Expect = 0.0
Identities = 820/820 (100%), Positives = 820/820 (100%)
Query: 1 MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT 60
MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT
Sbjct: 1 MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT 60
Query: 61 AYQKQQDTLIVWSEAENYDLALSFQEKAGCDEIWEKICQVQGKDPSVDITQDLVDESEEE 120
AYQKQQDTLIVWSEAENYDLALSFQEKAGCDEIWEKICQVQGKDPSVDITQDLVDESEEE
Sbjct: 61 AYQKQQDTLIVWSEAENYDLALSFQEKAGCDEIWEKICQVQGKDPSVDITQDLVDESEEE 120
Query: 121 RFDDMSSPGLELPSCELSRLEEIAELVASSLPSPLRREKLALALENEGYIKKLLELFHVC 180
RFDDMSSPGLELPSCELSRLEEIAELVASSLPSPLRREKLALALENEGYIKKLLELFHVC
Sbjct: 121 RFDDMSSPGLELPSCELSRLEEIAELVASSLPSPLRREKLALALENEGYIKKLLELFHVC 180
Query: 181 EDLENIEGLHHLYEIIKGIFLLNRTALFEVMFSEECIMDVIGCLEYDPALSQPRKHREFL 240
EDLENIEGLHHLYEIIKGIFLLNRTALFEVMFSEECIMDVIGCLEYDPALSQPRKHREFL
Sbjct: 181 EDLENIEGLHHLYEIIKGIFLLNRTALFEVMFSEECIMDVIGCLEYDPALSQPRKHREFL 240
Query: 241 TKTAKFKEVIPISDPELKQKIHQTYRVQYIQDMVLPTPSVFEENMLSTLHSFIFFNKVEI 300
TKTAKFKEVIPISDPELKQKIHQTYRVQYIQDMVLPTPSVFEENMLSTLHSFIFFNKVEI
Sbjct: 241 TKTAKFKEVIPISDPELKQKIHQTYRVQYIQDMVLPTPSVFEENMLSTLHSFIFFNKVEI 300
Query: 301 VGMLQEDEKFLTDLFAQLTDEATDEEKRQELVNFLKEFCAFSQTLQPQNRDAFFKTLSNM 360
VGMLQEDEKFLTDLFAQLTDEATDEEKRQELVNFLKEFCAFSQTLQPQNRDAFFKTLSNM
Sbjct: 301 VGMLQEDEKFLTDLFAQLTDEATDEEKRQELVNFLKEFCAFSQTLQPQNRDAFFKTLSNM 360
Query: 361 GILPALEVILGMDDTQVRSAATDIFSYLVEYNPSMVREFVMQEAQQNDDDILLINLIIEH 420
GILPALEVILGMDDTQVRSAATDIFSYLVEYNPSMVREFVMQEAQQNDDDILLINLIIEH
Sbjct: 361 GILPALEVILGMDDTQVRSAATDIFSYLVEYNPSMVREFVMQEAQQNDDDILLINLIIEH 420
Query: 421 MICDTDPELGGAVQLMGLLRTLVDPENMLATANKTEKTEFLGFFYKHCMHVLTAPLLANT 480
MICDTDPELGGAVQLMGLLRTLVDPENMLATANKTEKTEFLGFFYKHCMHVLTAPLLANT
Sbjct: 421 MICDTDPELGGAVQLMGLLRTLVDPENMLATANKTEKTEFLGFFYKHCMHVLTAPLLANT 480
Query: 481 TEDKPSKDDFQTAQLLALVLELLTFCVEHHTYHIKNYIINKDILRRVLVLMASKHAFLAL 540
TEDKPSKDDFQTAQLLALVLELLTFCVEHHTYHIKNYIINKDILRRVLVLMASKHAFLAL
Sbjct: 481 TEDKPSKDDFQTAQLLALVLELLTFCVEHHTYHIKNYIINKDILRRVLVLMASKHAFLAL 540
Query: 541 CALRFKRKIIGLKDEFYNRYIMKSFLFEPVVKAFLNNGSRYNLMNSAIIEMFEFIRVEDI 600
CALRFKRKIIGLKDEFYNRYIMKSFLFEPVVKAFLNNGSRYNLMNSAIIEMFEFIRVEDI
Sbjct: 541 CALRFKRKIIGLKDEFYNRYIMKSFLFEPVVKAFLNNGSRYNLMNSAIIEMFEFIRVEDI 600
Query: 601 KSLTAHVIENYWKALEDVDYVQTFKGLKLRFEQQRERQDNPKLDSMRSILRNHRYRRDAR 660
KSLTAHVIENYWKALEDVDYVQTFKGLKLRFEQQRERQDNPKLDSMRSILRNHRYRRDAR
Sbjct: 601 KSLTAHVIENYWKALEDVDYVQTFKGLKLRFEQQRERQDNPKLDSMRSILRNHRYRRDAR 660
Query: 661 TLEDEEEMWFNTDEDDMEDGEAVVSPSDKTKNDDDIMDPISKFMERKKLKESEEKEVLLK 720
TLEDEEEMWFNTDEDDMEDGEAVVSPSDKTKNDDDIMDPISKFMERKKLKESEEKEVLLK
Sbjct: 661 TLEDEEEMWFNTDEDDMEDGEAVVSPSDKTKNDDDIMDPISKFMERKKLKESEEKEVLLK 720
Query: 721 TNLSGRQSPSFKLSLSSGTKTNLTSQSSTTNLPGSPGSPGSPGSPGSPGSVPKNTSQTAA 780
TNLSGRQSPSFKLSLSSGTKTNLTSQSSTTNLPGSPGSPGSPGSPGSPGSVPKNTSQTAA
Sbjct: 721 TNLSGRQSPSFKLSLSSGTKTNLTSQSSTTNLPGSPGSPGSPGSPGSPGSVPKNTSQTAA 780
Query: 781 ITTKGGLVGLVDYPDDDEDDDEDEDKEDTLPLSKKAKFDS 820
ITTKGGLVGLVDYPDDDEDDDEDEDKEDTLPLSKKAKFDS
Sbjct: 781 ITTKGGLVGLVDYPDDDEDDDEDEDKEDTLPLSKKAKFDS 820
>gi|171916095 SMEK homolog 2, suppressor of mek1 isoform 1 [Homo
sapiens]
Length = 849
Score = 1201 bits (3107), Expect = 0.0
Identities = 612/860 (71%), Positives = 708/860 (82%), Gaps = 64/860 (7%)
Query: 1 MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT 60
M+DTRRRVKVYTLNEDRQWDDRGTGHVSS YVE LKGMSLLVRAESDGSLLLESKINPNT
Sbjct: 1 MSDTRRRVKVYTLNEDRQWDDRGTGHVSSTYVEELKGMSLLVRAESDGSLLLESKINPNT 60
Query: 61 AYQKQQDTLIVWSEAENYDLALSFQEKAGCDEIWEKICQVQGKDPSVDITQDLVDESEEE 120
AYQKQQDTLIVWSEAENYDLALSFQEKAGCDEIWEKICQVQGKDPSV++TQDL+DESEEE
Sbjct: 61 AYQKQQDTLIVWSEAENYDLALSFQEKAGCDEIWEKICQVQGKDPSVEVTQDLIDESEEE 120
Query: 121 RFDDM--SSPGLELPSCELSRLEEIAELVASSLPSPLRREKLALALENEGYIKKLLELFH 178
RF++M +S ++LP+CEL++LEEIA+LV S L SP+RREKLALALENEGYIKKLL+LF
Sbjct: 121 RFEEMPETSHLIDLPTCELNKLEEIADLVTSVLSSPIRREKLALALENEGYIKKLLQLFQ 180
Query: 179 VCEDLENIEGLHHLYEIIKGIFLLNRTALFEVMFSEECIMDVIGCLEYDPALSQPRKHRE 238
CE+LEN EGLHHLYEII+GI LN+ LFEVMFS+ECIMDV+GCLEYDPAL+QP++HRE
Sbjct: 181 ACENLENTEGLHHLYEIIRGILFLNKATLFEVMFSDECIMDVVGCLEYDPALAQPKRHRE 240
Query: 239 FLTKTAKFKEVIPISDPELKQKIHQTYRVQYIQDMVLPTPSVFEENMLSTLHSFIFFNKV 298
FLTKTAKFKEVIPI+D EL+QKIHQTYRVQYIQD++LPTPSVFEEN LSTL SFIFFNKV
Sbjct: 241 FLTKTAKFKEVIPITDSELRQKIHQTYRVQYIQDIILPTPSVFEENFLSTLTSFIFFNKV 300
Query: 299 EIVGMLQEDEKFLTDLFAQLTDEATDEEKRQELVNFLKEFCAFSQTLQPQNRDAFFKTLS 358
EIV MLQEDEKFL+++FAQLTDEATD++KR+ELVNF KEFCAFSQTLQPQNRDAFFKTL+
Sbjct: 301 EIVSMLQEDEKFLSEVFAQLTDEATDDDKRRELVNFFKEFCAFSQTLQPQNRDAFFKTLA 360
Query: 359 NMGILPALEVILGMDDTQVRSAATDIFSYLVEYNPSMVREFVMQEAQQNDDDILLINLII 418
+GILPALE+++GMDD QVRSAATDIFSYLVE++PSMVREFVMQEAQQ+DDDILLIN++I
Sbjct: 361 KLGILPALEIVMGMDDLQVRSAATDIFSYLVEFSPSMVREFVMQEAQQSDDDILLINVVI 420
Query: 419 EHMICDTDPELGGAVQLMGLLRTLVDPENMLATANKTEKTEFLGFFYKHCMHVLTAPLLA 478
E MICDTDPELGGAVQLMGLLRTL+DPENMLAT NKTEK+EFL FFY HCMHVLTAPLL
Sbjct: 421 EQMICDTDPELGGAVQLMGLLRTLIDPENMLATTNKTEKSEFLNFFYNHCMHVLTAPLLT 480
Query: 479 NTTEDKPSK----------------------------------------------DDFQT 492
NT+EDK K D++QT
Sbjct: 481 NTSEDKCEKDFFLKHYRYSWSFICTPSHSHSHSTPSSSISQDNIVGSNKNNTICPDNYQT 540
Query: 493 AQLLALVLELLTFCVEHHTYHIKNYIINKDILRRVLVLMASKHAFLALCALRFKRKIIGL 552
AQLLAL+LELLTFCVEHHTYHIKNYI+NKD+LRRVLVLM SKH FLALCALRF R+IIGL
Sbjct: 541 AQLLALILELLTFCVEHHTYHIKNYIMNKDLLRRVLVLMNSKHTFLALCALRFMRRIIGL 600
Query: 553 KDEFYNRYIMKSFLFEPVVKAFLNNGSRYNLMNSAIIEMFEFIRVEDIKSLTAHVIENYW 612
KDEFYNRYI K LFEPV+ A L+NG+RYNL+NSA+IE+FEFIRVEDIKSLTAH++EN++
Sbjct: 601 KDEFYNRYITKGNLFEPVINALLDNGTRYNLLNSAVIELFEFIRVEDIKSLTAHIVENFY 660
Query: 613 KALEDVDYVQTFKGLKLRFEQQRERQDNPKLDSMRSILRNHRYRRDARTLEDEEEMWFNT 672
KALE ++YVQTFKGLK ++EQ+++RQ N KL+S+ SILR++R+RRDA+ LE++EEMWFN
Sbjct: 661 KALESIEYVQTFKGLKTKYEQEKDRQ-NQKLNSVPSILRSNRFRRDAKALEEDEEMWFNE 719
Query: 673 DEDDMEDGEAVVSPSDKTKNDDDIMDPISKFMERKKLKESEEKEVLLKTNLSGRQSPSFK 732
DE+ E+G+AVV+P +K K +DD D KFME KK KESE+KE L K G +F
Sbjct: 720 DEE--EEGKAVVAPVEKPKPEDDFPDNYEKFMETKKAKESEDKENLPKRTSPGGFKFTFS 777
Query: 733 LSLSSGTKTNLTSQSSTTNLPGSPGSPGSPGSPGSPGSVPKNTSQTAAIT-TKGGLVGLV 791
S S+ TN S+S +P + S GS K T+ ++T TKG LVGLV
Sbjct: 778 HSASAANGTN--SKSVVAQIPPAT----------SNGSSSKTTNLPTSVTATKGSLVGLV 825
Query: 792 DYPDDDEDDDEDEDKEDTLP 811
DYPDD+E+D+E+E P
Sbjct: 826 DYPDDEEEDEEEESSPRKRP 845
>gi|39930397 SMEK homolog 2, suppressor of mek1 isoform 2 [Homo
sapiens]
Length = 764
Score = 1109 bits (2869), Expect = 0.0
Identities = 567/814 (69%), Positives = 665/814 (81%), Gaps = 57/814 (7%)
Query: 1 MTDTRRRVKVYTLNEDRQWDDRGTGHVSSGYVERLKGMSLLVRAESDGSLLLESKINPNT 60
M+DTRRRVKVYTLNEDRQWDDRGTGHVSS YVE LKGMSLLVRAESDGSLLLESKINPNT
Sbjct: 1 MSDTRRRVKVYTLNEDRQWDDRGTGHVSSTYVEELKGMSLLVRAESDGSLLLESKINPNT 60
Query: 61 AYQKQQDTLIVWSEAENYDLALSFQEKAGCDEIWEKICQVQGKDPSVDITQDLVDESEEE 120
AYQKQQDTLIVWSEAENYDLALSFQEKAGCDEIWEKICQVQGKDPSV++TQDL+DESEEE
Sbjct: 61 AYQKQQDTLIVWSEAENYDLALSFQEKAGCDEIWEKICQVQGKDPSVEVTQDLIDESEEE 120
Query: 121 RFDDM--SSPGLELPSCELSRLEEIAELVASSLPSPLRREKLALALENEGYIKKLLELFH 178
RF++M +S ++LP+CEL++LEEIA+LV S L SP+RREKLALALENEGYIKKLL+LF
Sbjct: 121 RFEEMPETSHLIDLPTCELNKLEEIADLVTSVLSSPIRREKLALALENEGYIKKLLQLFQ 180
Query: 179 VCEDLENIEGLHHLYEIIKGIFLLNRTALFEVMFSEECIMDVIGCLEYDPALSQPRKHRE 238
CE+LEN EGLHHLYEII+GI LN+ LFEVMFS+ECIMDV+GCLEYDPAL+QP++HRE
Sbjct: 181 ACENLENTEGLHHLYEIIRGILFLNKATLFEVMFSDECIMDVVGCLEYDPALAQPKRHRE 240
Query: 239 FLTKTAKFKEVIPISDPELKQKIHQTYRVQYIQDMVLPTPSVFEENMLSTLHSFIFFNKV 298
FLTKTAKFKEVIPI+D EL+QKIHQTYRVQYIQD++LPTPSVFEEN LSTL SFIFFNKV
Sbjct: 241 FLTKTAKFKEVIPITDSELRQKIHQTYRVQYIQDIILPTPSVFEENFLSTLTSFIFFNKV 300
Query: 299 EIVGMLQEDEKFLTDLFAQLTDEATDEEKRQELVNFLKEFCAFSQTLQPQNRDAFFKTLS 358
EIV MLQEDEKFL+++FAQLTDEATD++KR+ELVNF KEFCAFSQTLQPQNRDAFFKTL+
Sbjct: 301 EIVSMLQEDEKFLSEVFAQLTDEATDDDKRRELVNFFKEFCAFSQTLQPQNRDAFFKTLA 360
Query: 359 NMGILPALEVILGMDDTQVRSAATDIFSYLVEYNPSMVREFVMQEAQQNDDDILLINLII 418
+GILPALE+++GMDD QVRSAATDIFSYLVE++PSMVREFVMQEAQQ+DDDILLIN++I
Sbjct: 361 KLGILPALEIVMGMDDLQVRSAATDIFSYLVEFSPSMVREFVMQEAQQSDDDILLINVVI 420
Query: 419 EHMICDTDPELGGAVQLMGLLRTLVDPENMLATANKTEKTEFLGFFYKHCMHVLTAPLLA 478
E MICDTDPELGGAVQLMGLLRTL+DPENMLAT NKTEK+EFL FFY HCMHVLTAPLL
Sbjct: 421 EQMICDTDPELGGAVQLMGLLRTLIDPENMLATTNKTEKSEFLNFFYNHCMHVLTAPLLT 480
Query: 479 NTTEDKPSKDDFQTAQLLALVLELLTFCVEHHTYHIKNYIINKDILRRVLVLMASKHAFL 538
NT+EDK KD+ ++ ++K+ +
Sbjct: 481 NTSEDKCEKDN---------------------------------------IVGSNKNNTI 501
Query: 539 ALCALRFKRKIIGLKDEFYNRYIMKSFLFEPVVKAFLNNGSRYNLMNSAIIEMFEFIRVE 598
ALRF R+IIGLKDEFYNRYI K LFEPV+ A L+NG+RYNL+NSA+IE+FEFIRVE
Sbjct: 502 CPGALRFMRRIIGLKDEFYNRYITKGNLFEPVINALLDNGTRYNLLNSAVIELFEFIRVE 561
Query: 599 DIKSLTAHVIENYWKALEDVDYVQTFKGLKLRFEQQRERQDNPKLDSMRSILRNHRYRRD 658
DIKSLTAH++EN++KALE ++YVQTFKGLK ++EQ+++RQ N KL+S+ SILR++R+RRD
Sbjct: 562 DIKSLTAHIVENFYKALESIEYVQTFKGLKTKYEQEKDRQ-NQKLNSVPSILRSNRFRRD 620
Query: 659 ARTLEDEEEMWFNTDEDDMEDGEAVVSPSDKTKNDDDIMDPISKFMERKKLKESEEKEVL 718
A+ LE++EEMWFN DE+ E+G+AVV+P +K K +DD D KFME KK KESE+KE L
Sbjct: 621 AKALEEDEEMWFNEDEE--EEGKAVVAPVEKPKPEDDFPDNYEKFMETKKAKESEDKENL 678
Query: 719 LKTNLSGRQSPSFKLSLSSGTKTNLTSQSSTTNLPGSPGSPGSPGSPGSPGSVPKNTSQT 778
K G +F S S+ TN S+S +P + S GS K T+
Sbjct: 679 PKRTSPGGFKFTFSHSASAANGTN--SKSVVAQIPPAT----------SNGSSSKTTNLP 726
Query: 779 AAIT-TKGGLVGLVDYPDDDEDDDEDEDKEDTLP 811
++T TKG LVGLVDYPDD+E+D+E+E P
Sbjct: 727 TSVTATKGSLVGLVDYPDDEEEDEEEESSPRKRP 760
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 54.7 bits (130), Expect = 3e-07
Identities = 44/149 (29%), Positives = 64/149 (42%), Gaps = 18/149 (12%)
Query: 663 EDEEEMWFNTDEDDMEDGEAVVSPSDKTKNDDDIMDPISKFMERKKLKESEEKEVLLKTN 722
ED E+ + DE+D GE VV P K K + KK+ S K+V + T
Sbjct: 26 EDSEDEEMSEDEEDDSSGEEVVIPQKKGKK--------AAATSAKKVVVSPTKKVAVAT- 76
Query: 723 LSGRQSPSFKLSLSSGTKTNLTSQSSTTNLPGSPGSPGSPGSPGSPGSVPKNTSQTAAIT 782
P+ K +++ G K T T + +PG G+ V + AAI
Sbjct: 77 ------PAKKAAVTPGKKAAATPAKKTVTPAKAVTTPGKKGATPGKALVATPGKKGAAIP 130
Query: 783 TKGGLVGL---VDYPDDDEDDDEDEDKED 808
KG G + D++EDDD +ED+ED
Sbjct: 131 AKGAKNGKNAKKEDSDEEEDDDSEEDEED 159
Score = 31.2 bits (69), Expect = 4.1
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 663 EDEEEMWFNTDEDDMEDGEAVVSPSDKTKNDDDIMDPISKFMERKKLKESEEK 715
EDEEE + D+DD ED E D+ + +++ +P+ + ++K + +++K
Sbjct: 236 EDEEEDDEDEDDDDDEDDEDDDDEDDEEEEEEEEEEPVKEAPGKRKKEMAKQK 288
Score = 30.4 bits (67), Expect = 6.9
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 792 DYPDDDEDDDEDEDKEDTLPLSK 814
D DDDEDD+E+E++E+ P+ +
Sbjct: 253 DEDDDDEDDEEEEEEEEEEPVKE 275
Score = 30.0 bits (66), Expect = 9.1
Identities = 11/14 (78%), Positives = 13/14 (92%)
Query: 795 DDDEDDDEDEDKED 808
D+DEDDD+DED ED
Sbjct: 242 DEDEDDDDDEDDED 255
Score = 30.0 bits (66), Expect = 9.1
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 792 DYPDDDEDDDEDEDKED 808
D DDD++DDED+D ED
Sbjct: 244 DEDDDDDEDDEDDDDED 260
>gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sapiens]
Length = 1758
Score = 43.5 bits (101), Expect = 8e-04
Identities = 59/236 (25%), Positives = 92/236 (38%), Gaps = 41/236 (17%)
Query: 619 DYVQTFKGLKLRFEQQRERQDNPKLDSMRSILRNHRYRRDARTLEDEEEMWFNTDEDDME 678
DY + K KL ++++ ++ N K L N +R +T E + F + +
Sbjct: 1079 DYSKDVKSEKLTTKEEKAKKPNEK----NKPLDNKGEKRKRKTEEKGVDKDFESSSMKIS 1134
Query: 679 DGEA--VVSPSDKTKNDDDI--------MDPISKFMERKKLKESEE--KEVLLKTNLSGR 726
E +V PS K K + D D IS KK+K + E K++ N+S
Sbjct: 1135 KLEVTEIVKPSPKRKMEPDTEKMDRTPEKDKISLSAPAKKIKLNRETGKKIGSTENISNT 1194
Query: 727 QSPSFKL-SLSSGTKTNLTSQSSTTNLPGSPGSPGSP---GSPGSPGSVPKNTSQTAAIT 782
+ PS KL S SS K + G+ GS + S S G P S+ T
Sbjct: 1195 KEPSEKLESTSSKVKQEKVKGKVRRKVTGTEGSSSTLVDYTSTSSTGGSPVRKSEEKTDT 1254
Query: 783 TKGGLVGLVDYPDD-------------------DEDD--DEDEDKEDTLPLSKKAK 817
+ + + +Y +D D+DD E+ED + T P+S K
Sbjct: 1255 KRTVIKTMEEYNNDNTAPAEDVIIMIQVPQSKWDKDDFESEEEDVKSTQPISSVGK 1310
>gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sapiens]
Length = 1792
Score = 43.5 bits (101), Expect = 8e-04
Identities = 59/236 (25%), Positives = 92/236 (38%), Gaps = 41/236 (17%)
Query: 619 DYVQTFKGLKLRFEQQRERQDNPKLDSMRSILRNHRYRRDARTLEDEEEMWFNTDEDDME 678
DY + K KL ++++ ++ N K L N +R +T E + F + +
Sbjct: 1113 DYSKDVKSEKLTTKEEKAKKPNEK----NKPLDNKGEKRKRKTEEKGVDKDFESSSMKIS 1168
Query: 679 DGEA--VVSPSDKTKNDDDI--------MDPISKFMERKKLKESEE--KEVLLKTNLSGR 726
E +V PS K K + D D IS KK+K + E K++ N+S
Sbjct: 1169 KLEVTEIVKPSPKRKMEPDTEKMDRTPEKDKISLSAPAKKIKLNRETGKKIGSTENISNT 1228
Query: 727 QSPSFKL-SLSSGTKTNLTSQSSTTNLPGSPGSPGSP---GSPGSPGSVPKNTSQTAAIT 782
+ PS KL S SS K + G+ GS + S S G P S+ T
Sbjct: 1229 KEPSEKLESTSSKVKQEKVKGKVRRKVTGTEGSSSTLVDYTSTSSTGGSPVRKSEEKTDT 1288
Query: 783 TKGGLVGLVDYPDD-------------------DEDD--DEDEDKEDTLPLSKKAK 817
+ + + +Y +D D+DD E+ED + T P+S K
Sbjct: 1289 KRTVIKTMEEYNNDNTAPAEDVIIMIQVPQSKWDKDDFESEEEDVKSTQPISSVGK 1344
>gi|9257192 adducin 2 isoform a [Homo sapiens]
Length = 726
Score = 40.0 bits (92), Expect = 0.009
Identities = 52/211 (24%), Positives = 82/211 (38%), Gaps = 32/211 (15%)
Query: 620 YVQTFKGLKLRFEQQRERQDNPKLDSMRSILRNHRYRRDARTLEDEEEMWFNTDEDDMED 679
Y + L++R + + + + + K +S L +R+ E ++ DED +D
Sbjct: 489 YTDPQEVLEMRNKIREQNRQDVKSAGPQSQLLASVIAEKSRSPSTESQLMSKGDEDTKDD 548
Query: 680 GEAVVSPSDKTKNDDDIMDPISKFMERKKLKESEEKEV--------LLKTNLSGRQSP-- 729
E V P+ ++ D ++ K +ERKKL+ EKE S QSP
Sbjct: 549 SEETV-PNPFSQLTDQELEEYKKEVERKKLELDGEKETAPEEPGSPAKSAPASPVQSPAK 607
Query: 730 ---------SFKLSLSSGTKTNLTSQSSTTNLPGSPGSPGSPGSPGSPGSV--PKNTSQT 778
S SL GTK TS+++TT P + G V + QT
Sbjct: 608 EAETKSPLVSPSKSLEEGTKKTETSKAATT----------EPETTQPEGVVVNGREEEQT 657
Query: 779 AAITTKGGLVGLVDYPDDDEDDDEDEDKEDT 809
A GL + D D D +D+ + T
Sbjct: 658 AEEILSKGLSQMTTSADTDVDTSKDKTESVT 688
>gi|63054872 ladybird homeobox 1 [Homo sapiens]
Length = 281
Score = 40.0 bits (92), Expect = 0.009
Identities = 41/191 (21%), Positives = 76/191 (39%), Gaps = 12/191 (6%)
Query: 622 QTFKGLKLRFEQQRERQDNPKLDSMRSILRNHRYRRDARTLEDEEEMWFNTDEDDMEDGE 681
+TFKGL++ Q E +D + R + R R A T E+ + +
Sbjct: 94 KTFKGLEVSVLQAAEGRDGMTIFGQRQTPKKRRKSRTAFTNHQIYEL------EKRFLYQ 147
Query: 682 AVVSPSDKTKNDDDI----MDPISKFMERKKLKESEEKEVLLKTNLSGRQSPSFKLSLSS 737
+SP+D+ + + I+ F R+ + + +E+ + + PS ++ + +
Sbjct: 148 KYLSPADRDQIAQQLGLTNAQVITWFQNRRAKLKRDLEEMKADVESAKKLGPSGQMDIVA 207
Query: 738 GTKTNLTSQSSTTNLPGSPGSPGSPGSPGSPGSVPKNTSQTAAITTKGGLVGLVDYPDDD 797
+ S+++ G + PGSP P PK A + L D P
Sbjct: 208 LAELEQNSEATAGGGGGCGRAKSRPGSPVLPPGAPKAPGAGALQLSPAS--PLTDQPASS 265
Query: 798 EDDDEDEDKED 808
+D EDE+ E+
Sbjct: 266 QDCSEDEEDEE 276
>gi|20070284 endomucin isoform 1 [Homo sapiens]
Length = 261
Score = 39.7 bits (91), Expect = 0.011
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 736 SSGTKTNLTSQSSTTNLPGSPGSP-GSPGSPGS----PGSVPKNTSQTAAITTKGG 786
SS KT S TT +PGS P SP G+ P ++P+NTSQ+ I T+GG
Sbjct: 121 SSKPKTETQSSIKTTEIPGSVLQPDASPSKTGTLTSIPVTIPENTSQSQVIGTEGG 176
>gi|145580615 KRI1 homolog [Homo sapiens]
Length = 709
Score = 39.7 bits (91), Expect = 0.011
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 16/111 (14%)
Query: 613 KALEDVDYVQTFKGLK--------LRFEQQRERQDNPKLDSMRSILRNHRYRRDARTLED 664
KA E+ DY++ KG K +E ++P+LD LR++ + E+
Sbjct: 201 KAQEEADYIEWLKGQKEIRNPDSLKELTHLKEYWNDPELDEGERFLRDYILNKRYEEEEE 260
Query: 665 EEEMWFNTDEDDMEDGEAVVSPSDKTKNDDDIMDPISKFMERKKLKESEEK 715
EEE DE++ME+ E V P + DD D F+ KK ++ E+K
Sbjct: 261 EEE-----DEEEMEEEEGVHGPPVQLAVDDS-SDEGELFL--KKQEDFEQK 303
>gi|9257180 adducin 2 isoform c [Homo sapiens]
Length = 420
Score = 39.7 bits (91), Expect = 0.011
Identities = 51/204 (25%), Positives = 80/204 (39%), Gaps = 32/204 (15%)
Query: 627 LKLRFEQQRERQDNPKLDSMRSILRNHRYRRDARTLEDEEEMWFNTDEDDMEDGEAVVSP 686
L++R + + + + + K +S L +R+ E ++ DED +D E V P
Sbjct: 190 LEMRNKIREQNRQDVKSAGPQSQLLASVIAEKSRSPSTESQLMSKGDEDTKDDSEETV-P 248
Query: 687 SDKTKNDDDIMDPISKFMERKKLKESEEKEV--------LLKTNLSGRQSP--------- 729
+ ++ D ++ K +ERKKL+ EKE S QSP
Sbjct: 249 NPFSQLTDQELEEYKKEVERKKLELDGEKETAPEEPGSPAKSAPASPVQSPAKEAETKSP 308
Query: 730 --SFKLSLSSGTKTNLTSQSSTTNLPGSPGSPGSPGSPGSPGSV--PKNTSQTAAITTKG 785
S SL GTK TS+++TT P + G V + QTA
Sbjct: 309 LVSPSKSLEEGTKKTETSKAATT----------EPETTQPEGVVVNGREEEQTAEEILSK 358
Query: 786 GLVGLVDYPDDDEDDDEDEDKEDT 809
GL + D D D +D+ + T
Sbjct: 359 GLSQMTTSADTDVDTSKDKTESVT 382
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 39.7 bits (91), Expect = 0.011
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
Query: 750 TNLPGSPGSPGSPGSPGSPGSVPKNTS--QTAAITTKG--------GLVGLVDYPDDDED 799
+ LPG PG PG PG PG PG +P+ + Q +I G G G Y + +
Sbjct: 144 SGLPGLPGPPGPPGPPGHPGVLPEGATDLQCPSICPPGPPGPPGMPGFKGPTGYKGEQGE 203
Query: 800 DDEDEDKEDTLP 811
+D +K D P
Sbjct: 204 VGKDGEKGDPGP 215
Score = 33.5 bits (75), Expect = 0.82
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 743 LTSQSSTTNLPGSPGSPGSPGSPGSPG 769
+ ++ LPG PG G+PG PG PG
Sbjct: 48 IDGEAGPPGLPGPPGPKGAPGKPGKPG 74
Score = 33.1 bits (74), Expect = 1.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 744 TSQSSTTNLPGSPGSPGSPGSPGSPGS 770
TS+ PG PG PG PG PG+ G+
Sbjct: 629 TSKDGQDGAPGEPGPPGDPGLPGAIGA 655
Score = 32.7 bits (73), Expect = 1.4
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 754 GSPGSPGSPGSPGSPGSV 771
G+PG PG PG PG PG++
Sbjct: 636 GAPGEPGPPGDPGLPGAI 653
Score = 32.0 bits (71), Expect = 2.4
Identities = 12/18 (66%), Positives = 12/18 (66%)
Query: 752 LPGSPGSPGSPGSPGSPG 769
LPG PG PG PG PG G
Sbjct: 30 LPGPPGPPGPPGKPGQDG 47
Score = 30.8 bits (68), Expect = 5.3
Identities = 16/57 (28%), Positives = 23/57 (40%)
Query: 725 GRQSPSFKLSLSSGTKTNLTSQSSTTNLPGSPGSPGSPGSPGSPGSVPKNTSQTAAI 781
G Q P + +K PG PG PG+ G+ G+PG + Q A +
Sbjct: 616 GDQGPQGPQGVPGTSKDGQDGAPGEPGPPGDPGLPGAIGAQGTPGICDTSACQGAVL 672
Score = 30.4 bits (67), Expect = 6.9
Identities = 12/20 (60%), Positives = 12/20 (60%)
Query: 747 SSTTNLPGSPGSPGSPGSPG 766
S LPG PG PG PG PG
Sbjct: 144 SGLPGLPGPPGPPGPPGHPG 163
Score = 30.0 bits (66), Expect = 9.1
Identities = 11/16 (68%), Positives = 11/16 (68%)
Query: 754 GSPGSPGSPGSPGSPG 769
G PG PG PG PG PG
Sbjct: 29 GLPGPPGPPGPPGKPG 44
Score = 30.0 bits (66), Expect = 9.1
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PG PG PG G PG PG
Sbjct: 67 PGKPGKPGEAGLPGLPG 83
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 39.3 bits (90), Expect = 0.015
Identities = 24/51 (47%), Positives = 28/51 (54%), Gaps = 9/51 (17%)
Query: 753 PGSPGSPGSPGSPGSPG------SVPKNTS-QTAAITTKGGLV--GLVDYP 794
PG PG PGSPGSPG PG + P+N S Q + K G+ GL YP
Sbjct: 123 PGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYP 173
Score = 36.6 bits (83), Expect = 0.097
Identities = 14/19 (73%), Positives = 15/19 (78%)
Query: 752 LPGSPGSPGSPGSPGSPGS 770
+PGSPG PGS G PG PGS
Sbjct: 538 MPGSPGGPGSDGKPGPPGS 556
Score = 34.7 bits (78), Expect = 0.37
Identities = 14/21 (66%), Positives = 15/21 (71%)
Query: 749 TTNLPGSPGSPGSPGSPGSPG 769
T+ PGSPGSPG G PG PG
Sbjct: 187 TSGHPGSPGSPGYQGPPGEPG 207
Score = 34.7 bits (78), Expect = 0.37
Identities = 13/18 (72%), Positives = 15/18 (83%)
Query: 754 GSPGSPGSPGSPGSPGSV 771
GSPG+PG+PG PG PG V
Sbjct: 1038 GSPGAPGAPGHPGPPGPV 1055
Score = 34.3 bits (77), Expect = 0.48
Identities = 13/17 (76%), Positives = 14/17 (82%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PG PG+ G PGSPGSPG
Sbjct: 182 PGPPGTSGHPGSPGSPG 198
Score = 34.3 bits (77), Expect = 0.48
Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 753 PGSPGSPGSPGSPGSPGSVPKNTSQTAAITTKGG--LVGLVDYPDDDEDD 800
PG PG PG PG PG+PG AAI GG G Y D+ D
Sbjct: 1178 PGHPGQPGPPGPPGAPGPCCGGVG-AAAIAGIGGEKAGGFAPYYGDEPMD 1226
Score = 33.9 bits (76), Expect = 0.63
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 753 PGSPGSPGSPGSPGSPGS 770
PG PG PG+ G PGSPGS
Sbjct: 179 PGPPGPPGTSGHPGSPGS 196
Score = 33.9 bits (76), Expect = 0.63
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 752 LPGSPGSPGSPGSPGSPGS 770
+PG PG G PGSPG PGS
Sbjct: 529 VPGGPGMRGMPGSPGGPGS 547
Score = 32.7 bits (73), Expect = 1.4
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 752 LPGSPGSPGSPGSPGSPGSVPKN 774
LPG PGS G+PG PG GS K+
Sbjct: 880 LPGPPGSNGNPGPPGPSGSPGKD 902
Score = 32.7 bits (73), Expect = 1.4
Identities = 12/17 (70%), Positives = 13/17 (76%)
Query: 754 GSPGSPGSPGSPGSPGS 770
GSPG PG PG PG PG+
Sbjct: 1176 GSPGHPGQPGPPGPPGA 1192
Score = 32.3 bits (72), Expect = 1.8
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 753 PGSPGSPGSPGSPGSPGS 770
PG PG PG+ G PGSPG+
Sbjct: 332 PGPPGPPGTAGFPGSPGA 349
Score = 32.3 bits (72), Expect = 1.8
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 753 PGSPGSPGSPGSPGSPGSVPKNTSQTAAITTKGGLVG 789
PG GSPG+ G PG+PG + A IT GL G
Sbjct: 929 PGEKGSPGAQGPPGAPGPL-----GIAGITGARGLAG 960
Score = 32.3 bits (72), Expect = 1.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 744 TSQSSTTNLPGSPGSPGSPGSPGSPG 769
T + + G G PG+PG+PGSPG
Sbjct: 1097 TGERGAAGIKGHRGFPGNPGAPGSPG 1122
Score = 32.0 bits (71), Expect = 2.4
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 753 PGSPGSPGSPGSPGSPGSVPKN 774
PG+PG+PG PG PG G K+
Sbjct: 1040 PGAPGAPGHPGPPGPVGPAGKS 1061
Score = 32.0 bits (71), Expect = 2.4
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 753 PGSPGSPGSPGSPGSPGSV 771
PG+PG+PGSPG G G++
Sbjct: 1112 PGNPGAPGSPGPAGQQGAI 1130
Score = 31.6 bits (70), Expect = 3.1
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 749 TTNLPGSPGSPGSPGSPGSPGS 770
T PGSPG+ G G GSPGS
Sbjct: 340 TAGFPGSPGAKGEVGPAGSPGS 361
Score = 31.6 bits (70), Expect = 3.1
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 754 GSPGSPGSPGSPGSPG 769
G PGSPG PGS G PG
Sbjct: 537 GMPGSPGGPGSDGKPG 552
Score = 31.2 bits (69), Expect = 4.1
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 753 PGSPGSPGSPGSPGSPGSV 771
PG PG+ G PGSPG+ G V
Sbjct: 335 PGPPGTAGFPGSPGAKGEV 353
Score = 31.2 bits (69), Expect = 4.1
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PG PGS G PG PGS G
Sbjct: 542 PGGPGSDGKPGPPGSQG 558
Score = 31.2 bits (69), Expect = 4.1
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 754 GSPGSPGSPGSPGSPG 769
GS GSPG PG PG PG
Sbjct: 1173 GSEGSPGHPGQPGPPG 1188
Score = 30.8 bits (68), Expect = 5.3
Identities = 12/18 (66%), Positives = 12/18 (66%)
Query: 753 PGSPGSPGSPGSPGSPGS 770
PG PG G PG PG PGS
Sbjct: 114 PGIPGRNGDPGIPGQPGS 131
Score = 30.8 bits (68), Expect = 5.3
Identities = 12/17 (70%), Positives = 13/17 (76%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PG+ G PGSPGSPG G
Sbjct: 185 PGTSGHPGSPGSPGYQG 201
Score = 30.4 bits (67), Expect = 6.9
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PG G PGSPG PGS G
Sbjct: 533 PGMRGMPGSPGGPGSDG 549
Score = 30.4 bits (67), Expect = 6.9
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 754 GSPGSPGSPGSPGSPG 769
G GSPG+PG+PG PG
Sbjct: 1035 GENGSPGAPGAPGHPG 1050
Score = 30.0 bits (66), Expect = 9.1
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 754 GSPGSPGSPGSPGSPG 769
G PG+PG+PGSPG G
Sbjct: 1110 GFPGNPGAPGSPGPAG 1125
>gi|21071067 TBP-associated factor 5 [Homo sapiens]
Length = 800
Score = 39.3 bits (90), Expect = 0.015
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 685 SPSDKTKNDDDIMDPISKFMERKKLKESEE----KEVLLKTNLSGRQSPSFKLSLSSGTK 740
+P +D + + +F+ + KL+E+EE + LL+ ++G +P S +
Sbjct: 85 APDAGAPHDRQTLLAVLQFLRQSKLREAEEALRREAGLLEEAVAGSGAPGEVDSAGAEVT 144
Query: 741 TNLTSQSSTTNLPGSPGSPGSPGSPGSPGSVPKNTSQTAAITTKGGLVGLVDYPD 795
+ L S+ T + PG P +P PG+ S +V ++ A K G V + D PD
Sbjct: 145 SALLSRV-TASAPG-PAAPDPPGTGASGATVVSGSASGPAAPGKVGSVAVEDQPD 197
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 39.3 bits (90), Expect = 0.015
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 740 KTNLTSQSSTTNLPGSPGSPGSPGSPGSPGSVPKNTSQTAAITTKGGLVG 789
K LT LPG+PG PG G PG+PG + TS+ +++ T G G
Sbjct: 777 KPGLTGPQGPQGLPGTPGRPGIKGEPGAPGKIV--TSEGSSMLTVPGPPG 824
Score = 33.5 bits (75), Expect = 0.82
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 729 PSFKLSLSSGTKTNLTSQSSTTNLPGSPGSPGSPGSPGSPGS 770
P K + K + SS +PG PG PG+ G PG PG+
Sbjct: 796 PGIKGEPGAPGKIVTSEGSSMLTVPGPPGPPGAMGPPGPPGA 837
Score = 31.6 bits (70), Expect = 3.1
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 754 GSPGSPGSPGSPGSPGSV-PKNTSQTAAITTKGGLVGL 790
G+ G PG G PG PGSV PK +S + G VGL
Sbjct: 647 GAAGEPGPHGPPGVPGSVGPKGSSGSPGPQGPPGPVGL 684
Score = 31.6 bits (70), Expect = 3.1
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 747 SSTTNLPGSPGSPGSPGSPGSPGSVPKNTSQ 777
SST + G PG PG PG PGS S + Q
Sbjct: 986 SSTMYVSGPPGPPGPPGPPGSISSSGQEIQQ 1016
Score = 31.2 bits (69), Expect = 4.1
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 720 KTNLSGRQSPSFKLSLSSGTKTNLTSQSSTTNLPGSPGSPGSPGSPGSPG 769
+ + G K+ S G+ S + PG PG+ G PG PG+PG
Sbjct: 795 RPGIKGEPGAPGKIVTSEGS-----SMLTVPGPPGPPGAMGPPGPPGAPG 839
Score = 30.4 bits (67), Expect = 6.9
Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 736 SSGTKTNLTSQSSTTNL---PGSPGSPGSPGSPGSPG 769
SS + +L+S T L PG PG PG PG G PG
Sbjct: 1194 SSISVEDLSSYLHTAGLSFIPGPPGPPGPPGPRGPPG 1230
Score = 30.0 bits (66), Expect = 9.1
Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 8/84 (9%)
Query: 688 DKTKNDDDIMDPISKFMERKKLKESEEKEVLLKTNLSGRQSPSFKLSLSSGTKTNLTSQS 747
DK D + + F+ +K + E E + R SP K + S
Sbjct: 536 DKIGLHSDSQEELWMFVRKKLMMEQENGNL--------RGSPGPKGDMGSPGPKGDRGFP 587
Query: 748 STTNLPGSPGSPGSPGSPGSPGSV 771
T +PG G PG G G GSV
Sbjct: 588 GTPGIPGPLGHPGPQGPKGQKGSV 611
>gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens]
Length = 957
Score = 38.5 bits (88), Expect = 0.026
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 740 KTNLTSQSSTTNLPGSPGSPGSPGSPGSPGSVPKNTSQTAAITTKGGLVGLVDYPDDDED 799
K L LPG+PG PG PG G PG + + T + G+ G P +
Sbjct: 450 KPGLQGPKGDPGLPGNPGYPGQPGQDGKPGY--QGIAGTPGVPGSPGIQGARGLPGYKGE 507
Query: 800 DDEDEDKED 808
D DK D
Sbjct: 508 PGRDGDKGD 516
Score = 33.5 bits (75), Expect = 0.82
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 752 LPGSPGSPGSPGSPGSPGSVPKNTSQTAAITTKGGLVGLVDYP 794
+PG GS GSPG PG+PGS K + I G GL P
Sbjct: 636 MPGLMGSNGSPGQPGTPGS--KGSKGEPGIQGMPGASGLKGEP 676
Score = 30.8 bits (68), Expect = 5.3
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 746 QSSTTNLPGSPGSPGSPGSPGSPGS 770
Q PG PG GS GSPG PG+
Sbjct: 627 QQGKKGAPGMPGLMGSNGSPGQPGT 651
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 37.4 bits (85), Expect = 0.057
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 744 TSQSSTTNLPGSPGSPGSPGSPGSPGSV---PKNTSQTAAITTKG--GLVGLVDYPDDD 797
T +PG+PG+PG PGS G PG + P + + G GL GL P D
Sbjct: 523 TGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQD 581
Score = 36.2 bits (82), Expect = 0.13
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 750 TNLPGSPGSPGSPGSPGSPGSV----PKNTSQTAAITTKGGLVGLVDYP 794
T + G PG PG PG PG PGS+ K A T GL G+ P
Sbjct: 487 TGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAP 535
Score = 35.4 bits (80), Expect = 0.22
Identities = 14/19 (73%), Positives = 14/19 (73%)
Query: 752 LPGSPGSPGSPGSPGSPGS 770
LPG PG PG PG PG PGS
Sbjct: 679 LPGDPGLPGQPGLPGIPGS 697
Score = 34.7 bits (78), Expect = 0.37
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 746 QSSTTNLPGSPGSPGSPGSPGSPGS 770
Q+ T G PG PG+PG+PG PGS
Sbjct: 519 QAGATGPKGLPGIPGAPGAPGFPGS 543
Score = 34.3 bits (77), Expect = 0.48
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 743 LTSQSSTTNLPGSPGSPGSPGSPGSPG 769
L+ Q LPG PG+PG PG G PG
Sbjct: 1200 LSGQKGDGGLPGIPGNPGLPGPKGEPG 1226
Score = 33.9 bits (76), Expect = 0.63
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 752 LPGSPGSPGSPGSPGSPGSVPKNTSQTAAITTKGGLVG 789
LPG PG PG G PG PG P + + GL+G
Sbjct: 986 LPGDPGQPGLSGQPGLPG--PPGPKGNPGLPGQPGLIG 1021
Score = 33.5 bits (75), Expect = 0.82
Identities = 22/48 (45%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 738 GTKTNLTSQSSTTNLPGSPGSPGSPGSPGSPGSVPKNTSQTAAITTKG 785
G K L S + LPG PG+PG G PG PG PK + IT KG
Sbjct: 558 GDKGELGSPGAP-GLPGLPGTPGQDGLPGLPG--PK--GEPGGITFKG 600
Score = 33.5 bits (75), Expect = 0.82
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 751 NLPGSPGSPGSPGSPGSPGSV 771
++PG PG GSPG PG+PG +
Sbjct: 854 DVPGPPGERGSPGIPGAPGPI 874
Score = 33.1 bits (74), Expect = 1.1
Identities = 13/18 (72%), Positives = 13/18 (72%)
Query: 752 LPGSPGSPGSPGSPGSPG 769
LPG PG PG PGS G PG
Sbjct: 685 LPGQPGLPGIPGSKGEPG 702
Score = 33.1 bits (74), Expect = 1.1
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 747 SSTTNLPGSPGSPGSPGSPGSPGSV 771
S LPG PG G+PG PG PG +
Sbjct: 996 SGQPGLPGPPGPKGNPGLPGQPGLI 1020
Score = 32.7 bits (73), Expect = 1.4
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 750 TNLPGSPGSPGSPGSPGSPGSVPKNTSQTAAITTKGGLVGLVDYP 794
+ +PG PGSPG PG G G ++ + G GL YP
Sbjct: 1047 SGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYP 1091
Score = 32.7 bits (73), Expect = 1.4
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 752 LPGSPGSPGSPGSPGSPGS 770
LPG+PG+ G PG PG PG+
Sbjct: 1108 LPGTPGAKGQPGLPGFPGT 1126
Score = 32.3 bits (72), Expect = 1.8
Identities = 12/17 (70%), Positives = 13/17 (76%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PG PG PG+PG PG PG
Sbjct: 95 PGLPGFPGTPGLPGMPG 111
Score = 32.3 bits (72), Expect = 1.8
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PG PG PG PG PG PG
Sbjct: 309 PGIPGLPGDPGYPGEPG 325
Score = 32.3 bits (72), Expect = 1.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 746 QSSTTNLPGSPGSPGSPGSPGSPG 769
+ + +PG+PG G PGSPG PG
Sbjct: 861 ERGSPGIPGAPGPIGPPGSPGLPG 884
Score = 32.3 bits (72), Expect = 1.8
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 748 STTNLPGSPGSPGSPGSPGSPGS 770
S+ LPG PG G PG PG PG+
Sbjct: 1071 SSIGLPGLPGPKGEPGLPGYPGN 1093
Score = 32.3 bits (72), Expect = 1.8
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 752 LPGSPGSPGSPGSPGSPG 769
LPG PG+PG+ G PG PG
Sbjct: 1105 LPGLPGTPGAKGQPGLPG 1122
Score = 31.6 bits (70), Expect = 3.1
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 752 LPGSPGSPGSPGSPGSPGS 770
LPG PG+PG PG PG G+
Sbjct: 97 LPGFPGTPGLPGMPGHDGA 115
Score = 31.6 bits (70), Expect = 3.1
Identities = 25/83 (30%), Positives = 28/83 (33%), Gaps = 17/83 (20%)
Query: 746 QSSTTNLPGSPGSPGSP---GSPGSPGSVPKNTSQTAAITTKG--------------GLV 788
Q LPG G PG P G PG PG + +G GL
Sbjct: 256 QKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLP 315
Query: 789 GLVDYPDDDEDDDEDEDKEDTLP 811
G YP + D E K DT P
Sbjct: 316 GDPGYPGEPGRDGEKGQKGDTGP 338
Score = 31.6 bits (70), Expect = 3.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 754 GSPGSPGSPGSPGSPGSV 771
G PG PG PG+PG+PG +
Sbjct: 716 GFPGIPGPPGAPGTPGRI 733
Score = 31.6 bits (70), Expect = 3.1
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 754 GSPGSPGSPGSPGSPGS--VPKNTSQTAAITTKG--GLVG 789
GSPG PG+PG G PGS +P + TKG G++G
Sbjct: 863 GSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMG 902
Score = 31.6 bits (70), Expect = 3.1
Identities = 17/47 (36%), Positives = 21/47 (44%)
Query: 723 LSGRQSPSFKLSLSSGTKTNLTSQSSTTNLPGSPGSPGSPGSPGSPG 769
L G++ +SS L LPG PG+PG GS G PG
Sbjct: 1058 LPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPG 1104
Score = 31.6 bits (70), Expect = 3.1
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 728 SPSFKLSLSSGTKTNLTSQSSTTNLPGSPGSPGSPGSPGSPG 769
+P K S+ L PG PG PG+PG PG G
Sbjct: 1093 NPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKG 1134
Score = 31.2 bits (69), Expect = 4.1
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 740 KTNLTSQSSTTNLPGSPGSPGSPGSPGSPG 769
K ++ +PG PG PG PG PG G
Sbjct: 299 KPGKDGENGQPGIPGLPGDPGYPGEPGRDG 328
Score = 31.2 bits (69), Expect = 4.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 751 NLPGSPGSPGSPGSPGSPG 769
++PG PG G PG+PG PG
Sbjct: 417 SIPGPPGLDGQPGAPGLPG 435
Score = 31.2 bits (69), Expect = 4.1
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PG G PG PGSPG PG
Sbjct: 1044 PGPSGVPGQPGSPGLPG 1060
Score = 30.8 bits (68), Expect = 5.3
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PG+PG PG PG G+PG
Sbjct: 101 PGTPGLPGMPGHDGAPG 117
Score = 30.8 bits (68), Expect = 5.3
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PGSPG PG G PG PG
Sbjct: 134 PGSPGFPGLQGPPGPPG 150
Score = 30.8 bits (68), Expect = 5.3
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 752 LPGSPGSPGSPGSPGSPGSV 771
L G PG PG PG G PGS+
Sbjct: 142 LQGPPGPPGIPGMKGEPGSI 161
Score = 30.8 bits (68), Expect = 5.3
Identities = 23/65 (35%), Positives = 23/65 (35%), Gaps = 14/65 (21%)
Query: 740 KTNLTSQSSTTNLPGSPGSPGSP------------GSPGSPGSVPKNTSQTAAITTKG-- 785
K Q LPG PG PG P G PG PG V I KG
Sbjct: 302 KDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNI 361
Query: 786 GLVGL 790
GL GL
Sbjct: 362 GLPGL 366
Score = 30.8 bits (68), Expect = 5.3
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PG PG PG PG PGS G
Sbjct: 683 PGLPGQPGLPGIPGSKG 699
Score = 30.8 bits (68), Expect = 5.3
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PG PG PGS G PG PG
Sbjct: 689 PGLPGIPGSKGEPGIPG 705
Score = 30.8 bits (68), Expect = 5.3
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 752 LPGSPGSPGSPGSPGSPGS 770
LPG PG G PG PG PG+
Sbjct: 708 LPGPPGPKGFPGIPGPPGA 726
Score = 30.4 bits (67), Expect = 6.9
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 746 QSSTTNLPGSPGSPGSPGSPGSPG 769
Q + PG PG PG G+PG PG
Sbjct: 992 QPGLSGQPGLPGPPGPKGNPGLPG 1015
Score = 30.0 bits (66), Expect = 9.1
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 749 TTNLPGSPGSPGSPGSPGSPG 769
T LPG PG G+PG G PG
Sbjct: 103 TPGLPGMPGHDGAPGPQGIPG 123
Score = 30.0 bits (66), Expect = 9.1
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PG G PG+PG PG PG
Sbjct: 422 PGLDGQPGAPGLPGPPG 438
Score = 30.0 bits (66), Expect = 9.1
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 6/31 (19%)
Query: 745 SQSSTTNLPGSPGS------PGSPGSPGSPG 769
+Q LPG+PG PG PG PG PG
Sbjct: 660 TQPGKPGLPGNPGRDGDVGLPGDPGLPGQPG 690
Score = 30.0 bits (66), Expect = 9.1
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 753 PGSPGSPGSPGSPGSPGS 770
PG G PG PG PG+PG+
Sbjct: 712 PGPKGFPGIPGPPGAPGT 729
Score = 30.0 bits (66), Expect = 9.1
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PG PG PG+PG+PG G
Sbjct: 718 PGIPGPPGAPGTPGRIG 734
Score = 30.0 bits (66), Expect = 9.1
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 754 GSPGSPGSPGSPGSPGSV 771
G PG PG PG+PG GSV
Sbjct: 1083 GEPGLPGYPGNPGIKGSV 1100
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 37.4 bits (85), Expect = 0.057
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 744 TSQSSTTNLPGSPGSPGSPGSPGSPGSV---PKNTSQTAAITTKG--GLVGLVDYPDDD 797
T +PG+PG+PG PGS G PG + P + + G GL GL P D
Sbjct: 523 TGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQD 581
Score = 36.2 bits (82), Expect = 0.13
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 750 TNLPGSPGSPGSPGSPGSPGSV----PKNTSQTAAITTKGGLVGLVDYP 794
T + G PG PG PG PG PGS+ K A T GL G+ P
Sbjct: 487 TGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAP 535
Score = 35.4 bits (80), Expect = 0.22
Identities = 14/19 (73%), Positives = 14/19 (73%)
Query: 752 LPGSPGSPGSPGSPGSPGS 770
LPG PG PG PG PG PGS
Sbjct: 679 LPGDPGLPGQPGLPGIPGS 697
Score = 34.7 bits (78), Expect = 0.37
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 746 QSSTTNLPGSPGSPGSPGSPGSPGS 770
Q+ T G PG PG+PG+PG PGS
Sbjct: 519 QAGATGPKGLPGIPGAPGAPGFPGS 543
Score = 34.3 bits (77), Expect = 0.48
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 743 LTSQSSTTNLPGSPGSPGSPGSPGSPG 769
L+ Q LPG PG+PG PG G PG
Sbjct: 1200 LSGQKGDGGLPGIPGNPGLPGPKGEPG 1226
Score = 33.9 bits (76), Expect = 0.63
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 752 LPGSPGSPGSPGSPGSPGSVPKNTSQTAAITTKGGLVG 789
LPG PG PG G PG PG P + + GL+G
Sbjct: 986 LPGDPGQPGLSGQPGLPG--PPGPKGNPGLPGQPGLIG 1021
Score = 33.5 bits (75), Expect = 0.82
Identities = 22/48 (45%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 738 GTKTNLTSQSSTTNLPGSPGSPGSPGSPGSPGSVPKNTSQTAAITTKG 785
G K L S + LPG PG+PG G PG PG PK + IT KG
Sbjct: 558 GDKGELGSPGAP-GLPGLPGTPGQDGLPGLPG--PK--GEPGGITFKG 600
Score = 33.5 bits (75), Expect = 0.82
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 751 NLPGSPGSPGSPGSPGSPGSV 771
++PG PG GSPG PG+PG +
Sbjct: 854 DVPGPPGERGSPGIPGAPGPI 874
Score = 33.1 bits (74), Expect = 1.1
Identities = 13/18 (72%), Positives = 13/18 (72%)
Query: 752 LPGSPGSPGSPGSPGSPG 769
LPG PG PG PGS G PG
Sbjct: 685 LPGQPGLPGIPGSKGEPG 702
Score = 33.1 bits (74), Expect = 1.1
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 747 SSTTNLPGSPGSPGSPGSPGSPGSV 771
S LPG PG G+PG PG PG +
Sbjct: 996 SGQPGLPGPPGPKGNPGLPGQPGLI 1020
Score = 32.7 bits (73), Expect = 1.4
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 750 TNLPGSPGSPGSPGSPGSPGSVPKNTSQTAAITTKGGLVGLVDYP 794
+ +PG PGSPG PG G G ++ + G GL YP
Sbjct: 1047 SGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYP 1091
Score = 32.7 bits (73), Expect = 1.4
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 752 LPGSPGSPGSPGSPGSPGS 770
LPG+PG+ G PG PG PG+
Sbjct: 1108 LPGTPGAKGQPGLPGFPGT 1126
Score = 32.3 bits (72), Expect = 1.8
Identities = 12/17 (70%), Positives = 13/17 (76%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PG PG PG+PG PG PG
Sbjct: 95 PGLPGFPGTPGLPGMPG 111
Score = 32.3 bits (72), Expect = 1.8
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PG PG PG PG PG PG
Sbjct: 309 PGIPGLPGDPGYPGEPG 325
Score = 32.3 bits (72), Expect = 1.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 746 QSSTTNLPGSPGSPGSPGSPGSPG 769
+ + +PG+PG G PGSPG PG
Sbjct: 861 ERGSPGIPGAPGPIGPPGSPGLPG 884
Score = 32.3 bits (72), Expect = 1.8
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 748 STTNLPGSPGSPGSPGSPGSPGS 770
S+ LPG PG G PG PG PG+
Sbjct: 1071 SSIGLPGLPGPKGEPGLPGYPGN 1093
Score = 32.3 bits (72), Expect = 1.8
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 752 LPGSPGSPGSPGSPGSPG 769
LPG PG+PG+ G PG PG
Sbjct: 1105 LPGLPGTPGAKGQPGLPG 1122
Score = 31.6 bits (70), Expect = 3.1
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 752 LPGSPGSPGSPGSPGSPGS 770
LPG PG+PG PG PG G+
Sbjct: 97 LPGFPGTPGLPGMPGHDGA 115
Score = 31.6 bits (70), Expect = 3.1
Identities = 25/83 (30%), Positives = 28/83 (33%), Gaps = 17/83 (20%)
Query: 746 QSSTTNLPGSPGSPGSP---GSPGSPGSVPKNTSQTAAITTKG--------------GLV 788
Q LPG G PG P G PG PG + +G GL
Sbjct: 256 QKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLP 315
Query: 789 GLVDYPDDDEDDDEDEDKEDTLP 811
G YP + D E K DT P
Sbjct: 316 GDPGYPGEPGRDGEKGQKGDTGP 338
Score = 31.6 bits (70), Expect = 3.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 754 GSPGSPGSPGSPGSPGSV 771
G PG PG PG+PG+PG +
Sbjct: 716 GFPGIPGPPGAPGTPGRI 733
Score = 31.6 bits (70), Expect = 3.1
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 754 GSPGSPGSPGSPGSPGS--VPKNTSQTAAITTKG--GLVG 789
GSPG PG+PG G PGS +P + TKG G++G
Sbjct: 863 GSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMG 902
Score = 31.6 bits (70), Expect = 3.1
Identities = 17/47 (36%), Positives = 21/47 (44%)
Query: 723 LSGRQSPSFKLSLSSGTKTNLTSQSSTTNLPGSPGSPGSPGSPGSPG 769
L G++ +SS L LPG PG+PG GS G PG
Sbjct: 1058 LPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPG 1104
Score = 31.6 bits (70), Expect = 3.1
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 728 SPSFKLSLSSGTKTNLTSQSSTTNLPGSPGSPGSPGSPGSPG 769
+P K S+ L PG PG PG+PG PG G
Sbjct: 1093 NPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKG 1134
Score = 31.2 bits (69), Expect = 4.1
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 740 KTNLTSQSSTTNLPGSPGSPGSPGSPGSPG 769
K ++ +PG PG PG PG PG G
Sbjct: 299 KPGKDGENGQPGIPGLPGDPGYPGEPGRDG 328
Score = 31.2 bits (69), Expect = 4.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 751 NLPGSPGSPGSPGSPGSPG 769
++PG PG G PG+PG PG
Sbjct: 417 SIPGPPGLDGQPGAPGLPG 435
Score = 31.2 bits (69), Expect = 4.1
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PG G PG PGSPG PG
Sbjct: 1044 PGPSGVPGQPGSPGLPG 1060
Score = 30.8 bits (68), Expect = 5.3
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PG+PG PG PG G+PG
Sbjct: 101 PGTPGLPGMPGHDGAPG 117
Score = 30.8 bits (68), Expect = 5.3
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PGSPG PG G PG PG
Sbjct: 134 PGSPGFPGLQGPPGPPG 150
Score = 30.8 bits (68), Expect = 5.3
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 752 LPGSPGSPGSPGSPGSPGSV 771
L G PG PG PG G PGS+
Sbjct: 142 LQGPPGPPGIPGMKGEPGSI 161
Score = 30.8 bits (68), Expect = 5.3
Identities = 23/65 (35%), Positives = 23/65 (35%), Gaps = 14/65 (21%)
Query: 740 KTNLTSQSSTTNLPGSPGSPGSP------------GSPGSPGSVPKNTSQTAAITTKG-- 785
K Q LPG PG PG P G PG PG V I KG
Sbjct: 302 KDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNI 361
Query: 786 GLVGL 790
GL GL
Sbjct: 362 GLPGL 366
Score = 30.8 bits (68), Expect = 5.3
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PG PG PG PG PGS G
Sbjct: 683 PGLPGQPGLPGIPGSKG 699
Score = 30.8 bits (68), Expect = 5.3
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PG PG PGS G PG PG
Sbjct: 689 PGLPGIPGSKGEPGIPG 705
Score = 30.8 bits (68), Expect = 5.3
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 752 LPGSPGSPGSPGSPGSPGS 770
LPG PG G PG PG PG+
Sbjct: 708 LPGPPGPKGFPGIPGPPGA 726
Score = 30.4 bits (67), Expect = 6.9
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 746 QSSTTNLPGSPGSPGSPGSPGSPG 769
Q + PG PG PG G+PG PG
Sbjct: 992 QPGLSGQPGLPGPPGPKGNPGLPG 1015
Score = 30.0 bits (66), Expect = 9.1
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 749 TTNLPGSPGSPGSPGSPGSPG 769
T LPG PG G+PG G PG
Sbjct: 103 TPGLPGMPGHDGAPGPQGIPG 123
Score = 30.0 bits (66), Expect = 9.1
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PG G PG+PG PG PG
Sbjct: 422 PGLDGQPGAPGLPGPPG 438
Score = 30.0 bits (66), Expect = 9.1
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 6/31 (19%)
Query: 745 SQSSTTNLPGSPGS------PGSPGSPGSPG 769
+Q LPG+PG PG PG PG PG
Sbjct: 660 TQPGKPGLPGNPGRDGDVGLPGDPGLPGQPG 690
Score = 30.0 bits (66), Expect = 9.1
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 753 PGSPGSPGSPGSPGSPGS 770
PG G PG PG PG+PG+
Sbjct: 712 PGPKGFPGIPGPPGAPGT 729
Score = 30.0 bits (66), Expect = 9.1
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PG PG PG+PG+PG G
Sbjct: 718 PGIPGPPGAPGTPGRIG 734
Score = 30.0 bits (66), Expect = 9.1
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 754 GSPGSPGSPGSPGSPGSV 771
G PG PG PG+PG GSV
Sbjct: 1083 GEPGLPGYPGNPGIKGSV 1100
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 37.4 bits (85), Expect = 0.057
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 744 TSQSSTTNLPGSPGSPGSPGSPGSPGSV---PKNTSQTAAITTKG--GLVGLVDYPDDD 797
T +PG+PG+PG PGS G PG + P + + G GL GL P D
Sbjct: 523 TGPKGLPGIPGAPGAPGFPGSKGEPGDILTFPGMKGDKGELGSPGAPGLPGLPGTPGQD 581
Score = 36.2 bits (82), Expect = 0.13
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 750 TNLPGSPGSPGSPGSPGSPGSV----PKNTSQTAAITTKGGLVGLVDYP 794
T + G PG PG PG PG PGS+ K A T GL G+ P
Sbjct: 487 TGISGPPGQPGLPGLPGPPGSLGFPGQKGEKGQAGATGPKGLPGIPGAP 535
Score = 35.4 bits (80), Expect = 0.22
Identities = 14/19 (73%), Positives = 14/19 (73%)
Query: 752 LPGSPGSPGSPGSPGSPGS 770
LPG PG PG PG PG PGS
Sbjct: 679 LPGDPGLPGQPGLPGIPGS 697
Score = 34.7 bits (78), Expect = 0.37
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 746 QSSTTNLPGSPGSPGSPGSPGSPGS 770
Q+ T G PG PG+PG+PG PGS
Sbjct: 519 QAGATGPKGLPGIPGAPGAPGFPGS 543
Score = 34.3 bits (77), Expect = 0.48
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 743 LTSQSSTTNLPGSPGSPGSPGSPGSPG 769
L+ Q LPG PG+PG PG G PG
Sbjct: 1200 LSGQKGDGGLPGIPGNPGLPGPKGEPG 1226
Score = 33.9 bits (76), Expect = 0.63
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 752 LPGSPGSPGSPGSPGSPGSVPKNTSQTAAITTKGGLVG 789
LPG PG PG G PG PG P + + GL+G
Sbjct: 986 LPGDPGQPGLSGQPGLPG--PPGPKGNPGLPGQPGLIG 1021
Score = 33.5 bits (75), Expect = 0.82
Identities = 22/48 (45%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 738 GTKTNLTSQSSTTNLPGSPGSPGSPGSPGSPGSVPKNTSQTAAITTKG 785
G K L S + LPG PG+PG G PG PG PK + IT KG
Sbjct: 558 GDKGELGSPGAP-GLPGLPGTPGQDGLPGLPG--PK--GEPGGITFKG 600
Score = 33.5 bits (75), Expect = 0.82
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 751 NLPGSPGSPGSPGSPGSPGSV 771
++PG PG GSPG PG+PG +
Sbjct: 854 DVPGPPGERGSPGIPGAPGPI 874
Score = 33.1 bits (74), Expect = 1.1
Identities = 13/18 (72%), Positives = 13/18 (72%)
Query: 752 LPGSPGSPGSPGSPGSPG 769
LPG PG PG PGS G PG
Sbjct: 685 LPGQPGLPGIPGSKGEPG 702
Score = 33.1 bits (74), Expect = 1.1
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 747 SSTTNLPGSPGSPGSPGSPGSPGSV 771
S LPG PG G+PG PG PG +
Sbjct: 996 SGQPGLPGPPGPKGNPGLPGQPGLI 1020
Score = 32.7 bits (73), Expect = 1.4
Identities = 16/45 (35%), Positives = 21/45 (46%)
Query: 750 TNLPGSPGSPGSPGSPGSPGSVPKNTSQTAAITTKGGLVGLVDYP 794
+ +PG PGSPG PG G G ++ + G GL YP
Sbjct: 1047 SGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYP 1091
Score = 32.7 bits (73), Expect = 1.4
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 752 LPGSPGSPGSPGSPGSPGS 770
LPG+PG+ G PG PG PG+
Sbjct: 1108 LPGTPGAKGQPGLPGFPGT 1126
Score = 32.3 bits (72), Expect = 1.8
Identities = 12/17 (70%), Positives = 13/17 (76%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PG PG PG+PG PG PG
Sbjct: 95 PGLPGFPGTPGLPGMPG 111
Score = 32.3 bits (72), Expect = 1.8
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PG PG PG PG PG PG
Sbjct: 309 PGIPGLPGDPGYPGEPG 325
Score = 32.3 bits (72), Expect = 1.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 746 QSSTTNLPGSPGSPGSPGSPGSPG 769
+ + +PG+PG G PGSPG PG
Sbjct: 861 ERGSPGIPGAPGPIGPPGSPGLPG 884
Score = 32.3 bits (72), Expect = 1.8
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 748 STTNLPGSPGSPGSPGSPGSPGS 770
S+ LPG PG G PG PG PG+
Sbjct: 1071 SSIGLPGLPGPKGEPGLPGYPGN 1093
Score = 32.3 bits (72), Expect = 1.8
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 752 LPGSPGSPGSPGSPGSPG 769
LPG PG+PG+ G PG PG
Sbjct: 1105 LPGLPGTPGAKGQPGLPG 1122
Score = 31.6 bits (70), Expect = 3.1
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 752 LPGSPGSPGSPGSPGSPGS 770
LPG PG+PG PG PG G+
Sbjct: 97 LPGFPGTPGLPGMPGHDGA 115
Score = 31.6 bits (70), Expect = 3.1
Identities = 25/83 (30%), Positives = 28/83 (33%), Gaps = 17/83 (20%)
Query: 746 QSSTTNLPGSPGSPGSP---GSPGSPGSVPKNTSQTAAITTKG--------------GLV 788
Q LPG G PG P G PG PG + +G GL
Sbjct: 256 QKGDQGLPGDRGPPGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIPGLP 315
Query: 789 GLVDYPDDDEDDDEDEDKEDTLP 811
G YP + D E K DT P
Sbjct: 316 GDPGYPGEPGRDGEKGQKGDTGP 338
Score = 31.6 bits (70), Expect = 3.1
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 754 GSPGSPGSPGSPGSPGSV 771
G PG PG PG+PG+PG +
Sbjct: 716 GFPGIPGPPGAPGTPGRI 733
Score = 31.6 bits (70), Expect = 3.1
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 754 GSPGSPGSPGSPGSPGS--VPKNTSQTAAITTKG--GLVG 789
GSPG PG+PG G PGS +P + TKG G++G
Sbjct: 863 GSPGIPGAPGPIGPPGSPGLPGKAGASGFPGTKGEMGMMG 902
Score = 31.6 bits (70), Expect = 3.1
Identities = 17/47 (36%), Positives = 21/47 (44%)
Query: 723 LSGRQSPSFKLSLSSGTKTNLTSQSSTTNLPGSPGSPGSPGSPGSPG 769
L G++ +SS L LPG PG+PG GS G PG
Sbjct: 1058 LPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPGIKGSVGDPG 1104
Score = 31.6 bits (70), Expect = 3.1
Identities = 15/42 (35%), Positives = 18/42 (42%)
Query: 728 SPSFKLSLSSGTKTNLTSQSSTTNLPGSPGSPGSPGSPGSPG 769
+P K S+ L PG PG PG+PG PG G
Sbjct: 1093 NPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGTPGPPGPKG 1134
Score = 31.2 bits (69), Expect = 4.1
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 740 KTNLTSQSSTTNLPGSPGSPGSPGSPGSPG 769
K ++ +PG PG PG PG PG G
Sbjct: 299 KPGKDGENGQPGIPGLPGDPGYPGEPGRDG 328
Score = 31.2 bits (69), Expect = 4.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 751 NLPGSPGSPGSPGSPGSPG 769
++PG PG G PG+PG PG
Sbjct: 417 SIPGPPGLDGQPGAPGLPG 435
Score = 31.2 bits (69), Expect = 4.1
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PG G PG PGSPG PG
Sbjct: 1044 PGPSGVPGQPGSPGLPG 1060
Score = 30.8 bits (68), Expect = 5.3
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PG+PG PG PG G+PG
Sbjct: 101 PGTPGLPGMPGHDGAPG 117
Score = 30.8 bits (68), Expect = 5.3
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PGSPG PG G PG PG
Sbjct: 134 PGSPGFPGLQGPPGPPG 150
Score = 30.8 bits (68), Expect = 5.3
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 752 LPGSPGSPGSPGSPGSPGSV 771
L G PG PG PG G PGS+
Sbjct: 142 LQGPPGPPGIPGMKGEPGSI 161
Score = 30.8 bits (68), Expect = 5.3
Identities = 23/65 (35%), Positives = 23/65 (35%), Gaps = 14/65 (21%)
Query: 740 KTNLTSQSSTTNLPGSPGSPGSP------------GSPGSPGSVPKNTSQTAAITTKG-- 785
K Q LPG PG PG P G PG PG V I KG
Sbjct: 302 KDGENGQPGIPGLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPGTGITIGEKGNI 361
Query: 786 GLVGL 790
GL GL
Sbjct: 362 GLPGL 366
Score = 30.8 bits (68), Expect = 5.3
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PG PG PG PG PGS G
Sbjct: 683 PGLPGQPGLPGIPGSKG 699
Score = 30.8 bits (68), Expect = 5.3
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PG PG PGS G PG PG
Sbjct: 689 PGLPGIPGSKGEPGIPG 705
Score = 30.8 bits (68), Expect = 5.3
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 752 LPGSPGSPGSPGSPGSPGS 770
LPG PG G PG PG PG+
Sbjct: 708 LPGPPGPKGFPGIPGPPGA 726
Score = 30.4 bits (67), Expect = 6.9
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 746 QSSTTNLPGSPGSPGSPGSPGSPG 769
Q + PG PG PG G+PG PG
Sbjct: 992 QPGLSGQPGLPGPPGPKGNPGLPG 1015
Score = 30.0 bits (66), Expect = 9.1
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 749 TTNLPGSPGSPGSPGSPGSPG 769
T LPG PG G+PG G PG
Sbjct: 103 TPGLPGMPGHDGAPGPQGIPG 123
Score = 30.0 bits (66), Expect = 9.1
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PG G PG+PG PG PG
Sbjct: 422 PGLDGQPGAPGLPGPPG 438
Score = 30.0 bits (66), Expect = 9.1
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 6/31 (19%)
Query: 745 SQSSTTNLPGSPGS------PGSPGSPGSPG 769
+Q LPG+PG PG PG PG PG
Sbjct: 660 TQPGKPGLPGNPGRDGDVGLPGDPGLPGQPG 690
Score = 30.0 bits (66), Expect = 9.1
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 753 PGSPGSPGSPGSPGSPGS 770
PG G PG PG PG+PG+
Sbjct: 712 PGPKGFPGIPGPPGAPGT 729
Score = 30.0 bits (66), Expect = 9.1
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PG PG PG+PG+PG G
Sbjct: 718 PGIPGPPGAPGTPGRIG 734
Score = 30.0 bits (66), Expect = 9.1
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 754 GSPGSPGSPGSPGSPGSV 771
G PG PG PG+PG GSV
Sbjct: 1083 GEPGLPGYPGNPGIKGSV 1100
>gi|11119430 testis-specific kinase substrate [Homo sapiens]
Length = 592
Score = 37.4 bits (85), Expect = 0.057
Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 21/158 (13%)
Query: 629 LRFEQQRERQDNPKLDSMRSILRNH--RYRRDARTLED-----EEEMWFNTDEDDMEDGE 681
L+ + R Q L S S+L + R R++A LE +E W T +ED E
Sbjct: 150 LKEKTNRVNQHVQSLQSECSVLSENLERRRQEAEELEGYCIQLKENCWKVTRS--VEDAE 207
Query: 682 AVVSPSDKTKNDDDIMDPISKFMERK------KLKESEEKEVLLKTNLSGRQSPSFKLSL 735
++ K + +++ ++++++ + +E+E +E K +Q P K
Sbjct: 208 I---KTNVLKQNSALLEEKLRYLQQQLQDETPRRQEAELQEPEEKQEPEEKQEPEEKQKP 264
Query: 736 SSGTKTNLTSQSSTTNLPGSPGSPGSPGSPGSP-GSVP 772
+G N ++T+ G PG PGSP P P G VP
Sbjct: 265 EAGLSWNSLGPAATSQ--GCPGPPGSPDKPSRPHGLVP 300
Score = 32.0 bits (71), Expect = 2.4
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Query: 98 CQVQGKDPSVDITQDLVDESEEERFDDMSSPGL--ELPSCELSRLEEIAELVASSLPSPL 155
C QG S + Q L+D + D++ GL PSC+ ++I EL +L +
Sbjct: 452 CASQGSQLSTESLQQLLDRALTSLVDEVKQRGLTPACPSCQRLH-KKILELERQALAKHV 510
Query: 156 RREKLALAL---ENEGYIKKLLELFHVCEDLENIEGLHHLY 193
R E L+ L ++E K L L + E + L HL+
Sbjct: 511 RAEALSSTLRLAQDEALRAKNLLLTDKMKPEEKMATLDHLH 551
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 37.4 bits (85), Expect = 0.057
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 744 TSQSSTTNLPGSPGSPGSPGSPGSPGS 770
T + LPG PG PG PG PG PG+
Sbjct: 1319 TGERGLAGLPGQPGPPGHPGPPGEPGT 1345
Score = 35.0 bits (79), Expect = 0.28
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 729 PSFKLSLSSGTKTNLTSQSSTTNLPGSPGSPGSPGSPGSPGS 770
P F ++ S L + T L G G PG PG PG PG+
Sbjct: 1053 PGFPGAVGSPGLPGLQGERGLTGLTGDKGEPGPPGQPGYPGA 1094
Score = 35.0 bits (79), Expect = 0.28
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 754 GSPGSPGSPGSPGSPGSVPKNTSQ 777
G+PG PG+PGSPG PG + + Q
Sbjct: 1482 GAPGRPGAPGSPGLPGQIGREGRQ 1505
Score = 33.5 bits (75), Expect = 0.82
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 741 TNLTSQSSTTNLPGSPGSPGSPGSPGSPG 769
T LT PG PG PG+ G PG PG
Sbjct: 1074 TGLTGDKGEPGPPGQPGYPGATGPPGLPG 1102
Score = 33.5 bits (75), Expect = 0.82
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 753 PGSPGSPGSPGSPGSPGSV 771
PG+PG GSPG PG PGS+
Sbjct: 1412 PGAPGPSGSPGLPGVPGSM 1430
Score = 33.5 bits (75), Expect = 0.82
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PG G+PG PG+PGSPG
Sbjct: 1478 PGKDGAPGRPGAPGSPG 1494
Score = 33.1 bits (74), Expect = 1.1
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 753 PGSPGSPGSPGSPGSPGS 770
PG PG G+PG PG+PGS
Sbjct: 1475 PGPPGKDGAPGRPGAPGS 1492
Score = 32.7 bits (73), Expect = 1.4
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 753 PGSPGSPGSPGSPGSPGSVPKNTSQTAAITTKGGLVG 789
PG PG PG GSPG PG P+ + I GL G
Sbjct: 1164 PGPPGFPGKVGSPGPPG--PQAEKGSEGIRGPSGLPG 1198
Score = 32.3 bits (72), Expect = 1.8
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 743 LTSQSSTTNLPGSPGS--PGSPGSPGSPGSVPKNTSQTAAITTKGGLVGLVDYPDDDEDD 800
L + LPG PG PG+PG PG P PK ++ I K G G P +
Sbjct: 445 LAGEPGPPGLPGPPGIGLPGTPGDPGGPPG-PKGDKGSSGIPGKEGPGGKPGKPGVKGEK 503
Query: 801 DEDEDKEDTLP 811
+ + TLP
Sbjct: 504 GDPCEVCPTLP 514
Score = 32.3 bits (72), Expect = 1.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 753 PGSPGSPGSPGSPGSPGSVPK 773
PG PG PG PG PG+ G+ K
Sbjct: 1331 PGPPGHPGPPGEPGTDGAAGK 1351
Score = 31.6 bits (70), Expect = 3.1
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 743 LTSQSSTTNLPGSPGSPGSPGSPGSPG 769
LT + PG PG PG PG+ G PG
Sbjct: 1073 LTGLTGDKGEPGPPGQPGYPGATGPPG 1099
Score = 31.6 bits (70), Expect = 3.1
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 753 PGSPGSPGSPGSPGSPGSVPKNTSQTAAITTKG--GLVGLVDYP 794
PG PG PG G+PG PG+ P + I +G GL G+ P
Sbjct: 1472 PGRPGPPGKDGAPGRPGA-PGSPGLPGQIGREGRQGLPGVRGLP 1514
Score = 31.2 bits (69), Expect = 4.1
Identities = 12/18 (66%), Positives = 12/18 (66%)
Query: 754 GSPGSPGSPGSPGSPGSV 771
G PG PG PG PG PG V
Sbjct: 1156 GQPGFPGPPGPPGFPGKV 1173
Score = 31.2 bits (69), Expect = 4.1
Identities = 16/42 (38%), Positives = 17/42 (40%)
Query: 753 PGSPGSPGSPGSPGSPGSVPKNTSQTAAITTKGGLVGLVDYP 794
PG G PG PG PG G T + GL GL P
Sbjct: 1290 PGHVGPPGPPGQPGPAGISAVGLKGDRGATGERGLAGLPGQP 1331
Score = 30.8 bits (68), Expect = 5.3
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 729 PSFKLSLSSGTKTNLTSQSSTTNLPGSPGSPGSPGSPGSPG 769
P F + S ++ + + G G PGSPG PG PG
Sbjct: 1167 PGFPGKVGSPGPPGPQAEKGSEGIRGPSGLPGSPGPPGPPG 1207
Score = 30.4 bits (67), Expect = 6.9
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 729 PSFKLSLSSGT--KTNLTSQSSTTNLPGSPGSPGSPGSPGSPG 769
P F L G + L Q PG PG+PG+ G PG G
Sbjct: 664 PGFGLPGKQGKAGERGLKGQKGDAGNPGDPGTPGTTGRPGLSG 706
Score = 30.4 bits (67), Expect = 6.9
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PG GSPG PG PG PG
Sbjct: 1014 PGCVGSPGLPGPPGLPG 1030
Score = 30.4 bits (67), Expect = 6.9
Identities = 12/18 (66%), Positives = 12/18 (66%)
Query: 753 PGSPGSPGSPGSPGSPGS 770
PG PG PG PG PG GS
Sbjct: 1158 PGFPGPPGPPGFPGKVGS 1175
Score = 30.4 bits (67), Expect = 6.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 753 PGSPGSPGSPGSPGSPGSV 771
PG PGS G PG+ G PG++
Sbjct: 1263 PGPPGSTGRPGAEGEPGAM 1281
Score = 30.0 bits (66), Expect = 9.1
Identities = 14/23 (60%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 754 GSPGSPGSPGSPGSPG--SVPKN 774
G PG PG PG PG PG VP N
Sbjct: 907 GPPGIPGPPGPPGVPGLQGVPGN 929
Score = 30.0 bits (66), Expect = 9.1
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 754 GSPGSPGSPGSPGSPGSVPKNTSQTAAITTKGGLVGL 790
GSPG PG G PG PG+V + + + GL GL
Sbjct: 1042 GSPGPPGPIGPPGFPGAV--GSPGLPGLQGERGLTGL 1076
Score = 30.0 bits (66), Expect = 9.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 750 TNLPGSPGSPGSPGSPGSPG 769
+ LPGSPG PG PG G G
Sbjct: 1194 SGLPGSPGPPGPPGIQGPAG 1213
>gi|171460948 TSC22 domain family, member 1 isoform 1 [Homo sapiens]
Length = 1073
Score = 37.4 bits (85), Expect = 0.057
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 14/102 (13%)
Query: 674 EDDMEDGEAVVSPSDKTKNDDDIMDPISKFMERKK---LKES-----------EEKEVLL 719
ED+ G +VV+ +K + D++ + R++ LKE E++ LL
Sbjct: 968 EDESSSGASVVAIDNKIEQAMDLVKSHLMYAVREEVEVLKEQIKELIEKNSQLEQENNLL 1027
Query: 720 KTNLSGRQSPSFKLSLSSGTKTNLTSQSSTTNLPGSPGSPGS 761
KT S Q F+ L +G+ T TT P P S GS
Sbjct: 1028 KTLASPEQLAQFQAQLQTGSPPATTQPQGTTQPPAQPASQGS 1069
>gi|119709834 castor homolog 1, zinc finger isoform a [Homo sapiens]
Length = 1759
Score = 37.0 bits (84), Expect = 0.074
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 10/86 (11%)
Query: 733 LSLSSGTKTNLTSQSSTTNLPGSPGSPGSPGSPGSPGSVPKNTSQTAAI----TTKGGLV 788
LSL + + L QS+ L + G G PG P + P+ + AA +++
Sbjct: 1620 LSLGAEPGSLLFLQSAAAGLGLALGDAGDPGPPDAAAPGPREGAAAAAAAAGESSQEDEE 1679
Query: 789 GLVDYP------DDDEDDDEDEDKED 808
++ P D+DEDDDED+D ED
Sbjct: 1680 EELELPEEEAEDDEDEDDDEDDDDED 1705
>gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens]
Length = 1243
Score = 36.6 bits (83), Expect = 0.097
Identities = 33/122 (27%), Positives = 48/122 (39%), Gaps = 21/122 (17%)
Query: 655 YRRDARTLEDEEEMWFNTDEDDMEDGEAVVSPSDKTKNDDDIMDPISKFMERKKLKESEE 714
+ R R + E D ME E +SP ++ + P L +
Sbjct: 733 FLRRIREIIQRVETLLKRDTGPMEAAEDTLSPQEEPAPLPALPVP---------LPDPSN 783
Query: 715 KEVLLKTNLSGRQSPSFKLSLSSGTKTNLTSQSSTTNLPGSPGSPGSPGSPGSPGSVPKN 774
+E+ T+L R +F S SS+ P SPG+P SPG+P SPG +
Sbjct: 784 EELQSSTSLEHRSWTAFSTS------------SSSPGTPLSPGNPFSPGTPISPGPIFPI 831
Query: 775 TS 776
TS
Sbjct: 832 TS 833
>gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-like
[Homo sapiens]
Length = 899
Score = 36.6 bits (83), Expect = 0.097
Identities = 20/88 (22%), Positives = 39/88 (44%)
Query: 628 KLRFEQQRERQDNPKLDSMRSILRNHRYRRDARTLEDEEEMWFNTDEDDMEDGEAVVSPS 687
K+R E++ + Q+ D + R R + + +EEE +E + E +
Sbjct: 425 KMREEKKMQEQEKKTRDQEEKMQEEERIREREKKMREEEETMREQEEKMQKQEENMWEQE 484
Query: 688 DKTKNDDDIMDPISKFMERKKLKESEEK 715
+K + + K E++K++E EEK
Sbjct: 485 EKEWQQQRLPEQKEKLWEQEKMQEQEEK 512
Score = 33.9 bits (76), Expect = 0.63
Identities = 18/84 (21%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 632 EQQRERQDNPKLDSMRSILRNHRYRRDARTLEDEEEMWFNTDEDDMEDGEAVVSPSDKTK 691
+Q RE++ + R ++ R R + ++E+MW ++ M + + + KT+
Sbjct: 383 KQMREQEQKMRDQEERMWEQDERLREKEERMREQEKMWEQVEK--MREEKKMQEQEKKTR 440
Query: 692 NDDDIMDPISKFMERKKLKESEEK 715
+ ++ M + ER+K EE+
Sbjct: 441 DQEEKMQEEERIREREKKMREEEE 464
Score = 32.0 bits (71), Expect = 2.4
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Query: 632 EQQRERQDNPKLDSMRSILRNHRYRRDARTLEDEEE-MWFNTDEDDMEDGEAVVSPSDKT 690
E+ RE+++ R + + R + + D+EE MW E E + ++
Sbjct: 362 EKMREQEEKMWRQEERLWEQEKQMREQEQKMRDQEERMW--------EQDERLREKEERM 413
Query: 691 KNDDDIMDPISKFMERKKLKESEEK 715
+ + + + + K E KK++E E+K
Sbjct: 414 REQEKMWEQVEKMREEKKMQEQEKK 438
Score = 32.0 bits (71), Expect = 2.4
Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 630 RFEQQRERQDN-----PKLDSMRSILRNHRYRRDARTLEDEEEMWFNTDEDDMEDGEAVV 684
R E+ RE++D K+ + + R + +T E E++ W E+ M + E +
Sbjct: 535 RQEKMREQEDQMWEQEEKMRDQEQKMWDQEERMEKKTQEQEKKTW--DQEEKMREEERMR 592
Query: 685 SPSDKTKNDDDIMDPISKFM--ERKKLKESEEK 715
K + ++++M + M + +K++E EEK
Sbjct: 593 EREKKMREEEEMMREQEEKMQEQEEKMQEQEEK 625
Score = 30.0 bits (66), Expect = 9.1
Identities = 17/84 (20%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 632 EQQRERQDNPKLDSMRSILRNHRYRRDARTLEDEEEMWFNTDEDDMEDGEAVVSPSDKTK 691
EQ+++ D K+ S+ + R+ + E+E E+ M++ E + +
Sbjct: 698 EQEKKTWDQEKMREEESMREREKKMREEEEMMREQEEKMQEQEEKMQEQE-----EEMWE 752
Query: 692 NDDDIMDPISKFMERKKLKESEEK 715
++ + + K E+++L E +EK
Sbjct: 753 QEEKMWEQEEKMWEQQRLPEQKEK 776
Score = 30.0 bits (66), Expect = 9.1
Identities = 23/97 (23%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Query: 622 QTFKGLKLRFEQQRERQDNPKLDSMRSILRNHRYR---RDARTLEDEEEMWFNTDEDDME 678
+T+ K+R E++ R+ K+ ++R + ++ + E EEEMW E+ M
Sbjct: 702 KTWDQEKMR-EEESMREREKKMREEEEMMREQEEKMQEQEEKMQEQEEEMW--EQEEKMW 758
Query: 679 DGEAVVSPSDKTKNDDDIMDPISKFMERKKLKESEEK 715
+ E + + + + K E++K+ E EEK
Sbjct: 759 EQEEKMWEQQRLPEQKEKLWEHEKMQEQEKIWEQEEK 795
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 36.6 bits (83), Expect = 0.097
Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 725 GRQSPSF---KLSL----SSGTKTNLTSQSSTTNLPGSPGSPGSPGSPGSPGSVPKNTSQ 777
G PSF KL+ SG +L + PG PG PG PG PG PG N+S
Sbjct: 870 GPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSD 929
Query: 778 TAAITTKGGLVG 789
G+ G
Sbjct: 930 VPGPAGLPGVPG 941
Score = 33.9 bits (76), Expect = 0.63
Identities = 17/50 (34%), Positives = 21/50 (42%)
Query: 720 KTNLSGRQSPSFKLSLSSGTKTNLTSQSSTTNLPGSPGSPGSPGSPGSPG 769
K +L +P K S + +S PG G PG PG PG PG
Sbjct: 970 KGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPG 1019
Score = 32.7 bits (73), Expect = 1.4
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 754 GSPGSPGSPGSPGSPGSVPKNTSQTAAITTKGGLVGL 790
G PG PG PG PG PG+ P S A +++ G GL
Sbjct: 1252 GMPGPPGPPGPPGPPGT-PVYDSNVFAESSRPGPPGL 1287
Score = 32.7 bits (73), Expect = 1.4
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 749 TTNLPGSPGSPGSPGSPGSPGS 770
T ++PG PG PG PG PG+ G+
Sbjct: 1417 TISVPGPPGPPGPPGPPGTMGA 1438
Score = 32.0 bits (71), Expect = 2.4
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 752 LPGSPGSPGSPGSPGSP 768
+PG PG PG PG PG+P
Sbjct: 1253 MPGPPGPPGPPGPPGTP 1269
Score = 31.6 bits (70), Expect = 3.1
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 750 TNLPGSPGSPGSPGSPGSPGSVPKNTS 776
++LPG PG PG G PG PG PK S
Sbjct: 1350 SSLPGPPGPPGPRGYPGIPG--PKGES 1374
Score = 31.2 bits (69), Expect = 4.1
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 753 PGSPGSPGSPGSPGSPGSVPKNTSQTAAITTKG 785
PG PG PG PG PG G P T Q ++ G
Sbjct: 946 PGFPGLPGPPGPPGREGP-PGRTGQKGSLGEAG 977
Score = 30.8 bits (68), Expect = 5.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 754 GSPGSPGSPGSPGSPGSVPKNTSQTAAITTKGGLVGL 790
G PG PG PG PG PG + ++ + GL G+
Sbjct: 903 GFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGV 939
Score = 30.8 bits (68), Expect = 5.3
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 741 TNLTSQSSTTNLPGSPGSPGSPGSPGSPGSV 771
+N+ ++SS PG PG+ G PG G+ G V
Sbjct: 1273 SNVFAESSRPGPPGLPGNQGPPGPKGAKGEV 1303
Score = 30.4 bits (67), Expect = 6.9
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 743 LTSQSSTTNLPGSPGSPGSPGSPGSPG 769
L Q +PG PG G PGSP PG
Sbjct: 753 LKGQKGEPGVPGPPGRAGPPGSPCLPG 779
Score = 30.4 bits (67), Expect = 6.9
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 742 NLTSQSSTTNLPGSPGSPGSPGSPGSPG 769
N + LPG PG G PG PG PG
Sbjct: 926 NSSDVPGPAGLPGVPGREGPPGFPGLPG 953
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 36.6 bits (83), Expect = 0.097
Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 725 GRQSPSF---KLSL----SSGTKTNLTSQSSTTNLPGSPGSPGSPGSPGSPGSVPKNTSQ 777
G PSF KL+ SG +L + PG PG PG PG PG PG N+S
Sbjct: 455 GPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSD 514
Query: 778 TAAITTKGGLVG 789
G+ G
Sbjct: 515 VPGPAGLPGVPG 526
Score = 33.9 bits (76), Expect = 0.63
Identities = 17/50 (34%), Positives = 21/50 (42%)
Query: 720 KTNLSGRQSPSFKLSLSSGTKTNLTSQSSTTNLPGSPGSPGSPGSPGSPG 769
K +L +P K S + +S PG G PG PG PG PG
Sbjct: 555 KGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPG 604
Score = 32.7 bits (73), Expect = 1.4
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 754 GSPGSPGSPGSPGSPGSVPKNTSQTAAITTKGGLVGL 790
G PG PG PG PG PG+ P S A +++ G GL
Sbjct: 837 GMPGPPGPPGPPGPPGT-PVYDSNVFAESSRPGPPGL 872
Score = 32.7 bits (73), Expect = 1.4
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 749 TTNLPGSPGSPGSPGSPGSPGS 770
T ++PG PG PG PG PG+ G+
Sbjct: 1002 TISVPGPPGPPGPPGPPGTMGA 1023
Score = 32.0 bits (71), Expect = 2.4
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 752 LPGSPGSPGSPGSPGSP 768
+PG PG PG PG PG+P
Sbjct: 838 MPGPPGPPGPPGPPGTP 854
Score = 31.6 bits (70), Expect = 3.1
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 750 TNLPGSPGSPGSPGSPGSPGSVPKNTS 776
++LPG PG PG G PG PG PK S
Sbjct: 935 SSLPGPPGPPGPRGYPGIPG--PKGES 959
Score = 31.2 bits (69), Expect = 4.1
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 753 PGSPGSPGSPGSPGSPGSVPKNTSQTAAITTKG 785
PG PG PG PG PG G P T Q ++ G
Sbjct: 531 PGFPGLPGPPGPPGREGP-PGRTGQKGSLGEAG 562
Score = 30.8 bits (68), Expect = 5.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 754 GSPGSPGSPGSPGSPGSVPKNTSQTAAITTKGGLVGL 790
G PG PG PG PG PG + ++ + GL G+
Sbjct: 488 GFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGV 524
Score = 30.8 bits (68), Expect = 5.3
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 741 TNLTSQSSTTNLPGSPGSPGSPGSPGSPGSV 771
+N+ ++SS PG PG+ G PG G+ G V
Sbjct: 858 SNVFAESSRPGPPGLPGNQGPPGPKGAKGEV 888
Score = 30.4 bits (67), Expect = 6.9
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 743 LTSQSSTTNLPGSPGSPGSPGSPGSPG 769
L Q +PG PG G PGSP PG
Sbjct: 338 LKGQKGEPGVPGPPGRAGPPGSPCLPG 364
Score = 30.4 bits (67), Expect = 6.9
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 742 NLTSQSSTTNLPGSPGSPGSPGSPGSPG 769
N + LPG PG G PG PG PG
Sbjct: 511 NSSDVPGPAGLPGVPGREGPPGFPGLPG 538
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 36.6 bits (83), Expect = 0.097
Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
Query: 725 GRQSPSF---KLSL----SSGTKTNLTSQSSTTNLPGSPGSPGSPGSPGSPGSVPKNTSQ 777
G PSF KL+ SG +L + PG PG PG PG PG PG N+S
Sbjct: 635 GPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRFGVNSSD 694
Query: 778 TAAITTKGGLVG 789
G+ G
Sbjct: 695 VPGPAGLPGVPG 706
Score = 33.9 bits (76), Expect = 0.63
Identities = 17/50 (34%), Positives = 21/50 (42%)
Query: 720 KTNLSGRQSPSFKLSLSSGTKTNLTSQSSTTNLPGSPGSPGSPGSPGSPG 769
K +L +P K S + +S PG G PG PG PG PG
Sbjct: 735 KGSLGEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPG 784
Score = 32.7 bits (73), Expect = 1.4
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 754 GSPGSPGSPGSPGSPGSVPKNTSQTAAITTKGGLVGL 790
G PG PG PG PG PG+ P S A +++ G GL
Sbjct: 1017 GMPGPPGPPGPPGPPGT-PVYDSNVFAESSRPGPPGL 1052
Score = 32.7 bits (73), Expect = 1.4
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 749 TTNLPGSPGSPGSPGSPGSPGS 770
T ++PG PG PG PG PG+ G+
Sbjct: 1182 TISVPGPPGPPGPPGPPGTMGA 1203
Score = 32.0 bits (71), Expect = 2.4
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 752 LPGSPGSPGSPGSPGSP 768
+PG PG PG PG PG+P
Sbjct: 1018 MPGPPGPPGPPGPPGTP 1034
Score = 31.6 bits (70), Expect = 3.1
Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 750 TNLPGSPGSPGSPGSPGSPGSVPKNTS 776
++LPG PG PG G PG PG PK S
Sbjct: 1115 SSLPGPPGPPGPRGYPGIPG--PKGES 1139
Score = 31.2 bits (69), Expect = 4.1
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 753 PGSPGSPGSPGSPGSPGSVPKNTSQTAAITTKG 785
PG PG PG PG PG G P T Q ++ G
Sbjct: 711 PGFPGLPGPPGPPGREGP-PGRTGQKGSLGEAG 742
Score = 30.8 bits (68), Expect = 5.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 754 GSPGSPGSPGSPGSPGSVPKNTSQTAAITTKGGLVGL 790
G PG PG PG PG PG + ++ + GL G+
Sbjct: 668 GFPGPPGPPGVPGLPGEPGRFGVNSSDVPGPAGLPGV 704
Score = 30.8 bits (68), Expect = 5.3
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 741 TNLTSQSSTTNLPGSPGSPGSPGSPGSPGSV 771
+N+ ++SS PG PG+ G PG G+ G V
Sbjct: 1038 SNVFAESSRPGPPGLPGNQGPPGPKGAKGEV 1068
Score = 30.4 bits (67), Expect = 6.9
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 743 LTSQSSTTNLPGSPGSPGSPGSPGSPG 769
L Q +PG PG G PGSP PG
Sbjct: 518 LKGQKGEPGVPGPPGRAGPPGSPCLPG 544
Score = 30.4 bits (67), Expect = 6.9
Identities = 13/28 (46%), Positives = 14/28 (50%)
Query: 742 NLTSQSSTTNLPGSPGSPGSPGSPGSPG 769
N + LPG PG G PG PG PG
Sbjct: 691 NSSDVPGPAGLPGVPGREGPPGFPGLPG 718
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 36.6 bits (83), Expect = 0.097
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 743 LTSQSSTTNLPGSPGSPGSPGSPGSPGS 770
+ Q+ PGS GSPG+PG PG PGS
Sbjct: 1234 IPGQTGNRGPPGSRGSPGAPGPPGPPGS 1261
Score = 35.0 bits (79), Expect = 0.28
Identities = 14/17 (82%), Positives = 14/17 (82%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PGSPG GSPG PGSPG
Sbjct: 417 PGSPGCAGSPGLPGSPG 433
Score = 34.7 bits (78), Expect = 0.37
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 754 GSPGSPGSPGSPGSPGSV 771
GSPG PGSPG PG PG +
Sbjct: 424 GSPGLPGSPGPPGPPGDI 441
Score = 34.7 bits (78), Expect = 0.37
Identities = 13/16 (81%), Positives = 14/16 (87%)
Query: 754 GSPGSPGSPGSPGSPG 769
G+PGSPGSPG PG PG
Sbjct: 1101 GAPGSPGSPGLPGKPG 1116
Score = 34.7 bits (78), Expect = 0.37
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 751 NLPGSPGSPGSPGSPGSPG 769
+LPGSPG PG+PG PG G
Sbjct: 1355 SLPGSPGPPGTPGEPGMQG 1373
Score = 33.9 bits (76), Expect = 0.63
Identities = 14/21 (66%), Positives = 14/21 (66%)
Query: 749 TTNLPGSPGSPGSPGSPGSPG 769
T PG GSPG PGSPG PG
Sbjct: 416 TPGSPGCAGSPGLPGSPGPPG 436
Score = 33.9 bits (76), Expect = 0.63
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 753 PGSPGSPGSPGSPGSPGSVPKNTSQTAAITTKG 785
PG PG+PG+PG GSPG +P Q KG
Sbjct: 903 PGPPGNPGTPGQRGSPG-IPGVKGQRGTPGAKG 934
Score = 33.5 bits (75), Expect = 0.82
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 753 PGSPGSPGSPGSPGSPGSV 771
PGSPGSPG PG PG G +
Sbjct: 1103 PGSPGSPGLPGKPGPHGDL 1121
Score = 33.1 bits (74), Expect = 1.1
Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 15/63 (23%)
Query: 743 LTSQSSTTNLPGSPGSPGSPGSPGSPGSVPKNTSQTAAITTKG-----------GLVGLV 791
LT + G PG GSPG PG+PG NT + G GL G +
Sbjct: 86 LTGSKGVRGISGLPGFSGSPGLPGTPG----NTGPYGLVGVPGCSGSKGEQGFPGLPGTL 141
Query: 792 DYP 794
YP
Sbjct: 142 GYP 144
Score = 32.7 bits (73), Expect = 1.4
Identities = 13/17 (76%), Positives = 14/17 (82%)
Query: 754 GSPGSPGSPGSPGSPGS 770
G+PGSPG GSPG PGS
Sbjct: 415 GTPGSPGCAGSPGLPGS 431
Score = 32.7 bits (73), Expect = 1.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 743 LTSQSSTTNLPGSPGSPGSPGSPGSPG 769
+ + L GSPGSPG+ G PG PG
Sbjct: 500 IPGRQGAAGLKGSPGSPGNTGLPGFPG 526
Score = 32.3 bits (72), Expect = 1.8
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 752 LPGSPGSPGSPGSPGSPGSV 771
LPG+PG G PG PG PG V
Sbjct: 175 LPGAPGPQGLPGPPGFPGPV 194
Score = 32.3 bits (72), Expect = 1.8
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 747 SSTTNLPGSPGSPGSPGSPGSPG 769
S +T +PG PG PG PG PG G
Sbjct: 649 SVSTPVPGPPGPPGPPGHPGPQG 671
Score = 32.3 bits (72), Expect = 1.8
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 753 PGSPGSPGSPGSPGSPGSVPK 773
PG PG PG G PG PGS+ K
Sbjct: 661 PGPPGHPGPQGPPGIPGSLGK 681
Score = 31.6 bits (70), Expect = 3.1
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 753 PGSPGSPGSPGSPGSPGS 770
PGSPG+ G PG PG PG+
Sbjct: 513 PGSPGNTGLPGFPGFPGA 530
Score = 31.6 bits (70), Expect = 3.1
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 743 LTSQSSTTNLPGSPGSPGSPGSPGSPG 769
L+ + PG PGSPGSPG G G
Sbjct: 588 LSGEKGDQGPPGDPGSPGSPGPAGPAG 614
Score = 31.6 bits (70), Expect = 3.1
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 753 PGSPGSPGSPGSPGSPGSVPK 773
PGSPGSPG G G PG P+
Sbjct: 601 PGSPGSPGPAGPAGPPGYGPQ 621
Score = 31.6 bits (70), Expect = 3.1
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 749 TTNLPGSPGSPGSPGSPGSPG 769
T + PGSPG PG+PG PG
Sbjct: 1350 TLKIISLPGSPGPPGTPGEPG 1370
Score = 31.2 bits (69), Expect = 4.1
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PG+ G PG PG+PG+PG
Sbjct: 897 PGAIGPPGPPGNPGTPG 913
Score = 31.2 bits (69), Expect = 4.1
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 754 GSPGSPGSPGSPGSPG 769
G G+PGSPGSPG PG
Sbjct: 1098 GPEGAPGSPGSPGLPG 1113
Score = 31.2 bits (69), Expect = 4.1
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PG PG+PG PG G PG
Sbjct: 1360 PGPPGTPGEPGMQGEPG 1376
Score = 31.2 bits (69), Expect = 4.1
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PG+PG PG G PG PG
Sbjct: 1363 PGTPGEPGMQGEPGPPG 1379
Score = 31.2 bits (69), Expect = 4.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 753 PGSPGSPGSPGSPGSPGSV 771
PG PG G PG PG PG++
Sbjct: 1366 PGEPGMQGEPGPPGPPGNL 1384
Score = 30.8 bits (68), Expect = 5.3
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 14/59 (23%)
Query: 752 LPGSPGSPGSPGSPGSPGSVPKNTSQTAAITTKGGLVGLVDYPDDDEDDDEDEDKEDTL 810
+PG G+ G GSPGSPG+ GL G +P D +K +TL
Sbjct: 500 IPGRQGAAGLKGSPGSPGNT--------------GLPGFPGFPGAQGDPGLKGEKGETL 544
Score = 30.8 bits (68), Expect = 5.3
Identities = 15/47 (31%), Positives = 19/47 (40%)
Query: 723 LSGRQSPSFKLSLSSGTKTNLTSQSSTTNLPGSPGSPGSPGSPGSPG 769
+ G Q + S GT+ + LPG G G G PG PG
Sbjct: 1046 IHGLQGDKGEPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQPGPPG 1092
Score = 30.4 bits (67), Expect = 6.9
Identities = 12/18 (66%), Positives = 12/18 (66%)
Query: 752 LPGSPGSPGSPGSPGSPG 769
LPG PG PG G PG PG
Sbjct: 184 LPGPPGFPGPVGPPGPPG 201
Score = 30.4 bits (67), Expect = 6.9
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 16/83 (19%)
Query: 738 GTKTNL--TSQSSTTNLPGSPGSPGS--------PGSPGSPGSVPK--NTSQTAAITTKG 785
GTK +L + LPG PG PG+ PG PG+PG + N+ + I
Sbjct: 715 GTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEI---- 770
Query: 786 GLVGLVDYPDDDEDDDEDEDKED 808
GL GL P ++ D + D
Sbjct: 771 GLPGLPGLPGTPGNEGLDGPRGD 793
Score = 30.0 bits (66), Expect = 9.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 750 TNLPGSPGSPGSPGSPGSPG 769
T LPG PG PG+ G PG G
Sbjct: 519 TGLPGFPGFPGAQGDPGLKG 538
Score = 30.0 bits (66), Expect = 9.1
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PG G PG PG PGSPG
Sbjct: 1133 PGIRGPPGLPGFPGSPG 1149
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 36.6 bits (83), Expect = 0.097
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 743 LTSQSSTTNLPGSPGSPGSPGSPGSPGS 770
+ Q+ PGS GSPG+PG PG PGS
Sbjct: 1234 IPGQTGNRGPPGSRGSPGAPGPPGPPGS 1261
Score = 35.0 bits (79), Expect = 0.28
Identities = 14/17 (82%), Positives = 14/17 (82%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PGSPG GSPG PGSPG
Sbjct: 417 PGSPGCAGSPGLPGSPG 433
Score = 34.7 bits (78), Expect = 0.37
Identities = 13/18 (72%), Positives = 14/18 (77%)
Query: 754 GSPGSPGSPGSPGSPGSV 771
GSPG PGSPG PG PG +
Sbjct: 424 GSPGLPGSPGPPGPPGDI 441
Score = 34.7 bits (78), Expect = 0.37
Identities = 13/16 (81%), Positives = 14/16 (87%)
Query: 754 GSPGSPGSPGSPGSPG 769
G+PGSPGSPG PG PG
Sbjct: 1101 GAPGSPGSPGLPGKPG 1116
Score = 34.7 bits (78), Expect = 0.37
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 751 NLPGSPGSPGSPGSPGSPG 769
+LPGSPG PG+PG PG G
Sbjct: 1355 SLPGSPGPPGTPGEPGMQG 1373
Score = 33.9 bits (76), Expect = 0.63
Identities = 14/21 (66%), Positives = 14/21 (66%)
Query: 749 TTNLPGSPGSPGSPGSPGSPG 769
T PG GSPG PGSPG PG
Sbjct: 416 TPGSPGCAGSPGLPGSPGPPG 436
Score = 33.9 bits (76), Expect = 0.63
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 753 PGSPGSPGSPGSPGSPGSVPKNTSQTAAITTKG 785
PG PG+PG+PG GSPG +P Q KG
Sbjct: 903 PGPPGNPGTPGQRGSPG-IPGVKGQRGTPGAKG 934
Score = 33.5 bits (75), Expect = 0.82
Identities = 13/19 (68%), Positives = 14/19 (73%)
Query: 753 PGSPGSPGSPGSPGSPGSV 771
PGSPGSPG PG PG G +
Sbjct: 1103 PGSPGSPGLPGKPGPHGDL 1121
Score = 33.1 bits (74), Expect = 1.1
Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 15/63 (23%)
Query: 743 LTSQSSTTNLPGSPGSPGSPGSPGSPGSVPKNTSQTAAITTKG-----------GLVGLV 791
LT + G PG GSPG PG+PG NT + G GL G +
Sbjct: 86 LTGSKGVRGISGLPGFSGSPGLPGTPG----NTGPYGLVGVPGCSGSKGEQGFPGLPGTL 141
Query: 792 DYP 794
YP
Sbjct: 142 GYP 144
Score = 32.7 bits (73), Expect = 1.4
Identities = 13/17 (76%), Positives = 14/17 (82%)
Query: 754 GSPGSPGSPGSPGSPGS 770
G+PGSPG GSPG PGS
Sbjct: 415 GTPGSPGCAGSPGLPGS 431
Score = 32.7 bits (73), Expect = 1.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 743 LTSQSSTTNLPGSPGSPGSPGSPGSPG 769
+ + L GSPGSPG+ G PG PG
Sbjct: 500 IPGRQGAAGLKGSPGSPGNTGLPGFPG 526
Score = 32.3 bits (72), Expect = 1.8
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 752 LPGSPGSPGSPGSPGSPGSV 771
LPG+PG G PG PG PG V
Sbjct: 175 LPGAPGPQGLPGPPGFPGPV 194
Score = 32.3 bits (72), Expect = 1.8
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 747 SSTTNLPGSPGSPGSPGSPGSPG 769
S +T +PG PG PG PG PG G
Sbjct: 649 SVSTPVPGPPGPPGPPGHPGPQG 671
Score = 32.3 bits (72), Expect = 1.8
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 753 PGSPGSPGSPGSPGSPGSVPK 773
PG PG PG G PG PGS+ K
Sbjct: 661 PGPPGHPGPQGPPGIPGSLGK 681
Score = 31.6 bits (70), Expect = 3.1
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 753 PGSPGSPGSPGSPGSPGS 770
PGSPG+ G PG PG PG+
Sbjct: 513 PGSPGNTGLPGFPGFPGA 530
Score = 31.6 bits (70), Expect = 3.1
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 743 LTSQSSTTNLPGSPGSPGSPGSPGSPG 769
L+ + PG PGSPGSPG G G
Sbjct: 588 LSGEKGDQGPPGDPGSPGSPGPAGPAG 614
Score = 31.6 bits (70), Expect = 3.1
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 753 PGSPGSPGSPGSPGSPGSVPK 773
PGSPGSPG G G PG P+
Sbjct: 601 PGSPGSPGPAGPAGPPGYGPQ 621
Score = 31.6 bits (70), Expect = 3.1
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 749 TTNLPGSPGSPGSPGSPGSPG 769
T + PGSPG PG+PG PG
Sbjct: 1350 TLKIISLPGSPGPPGTPGEPG 1370
Score = 31.2 bits (69), Expect = 4.1
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PG+ G PG PG+PG+PG
Sbjct: 897 PGAIGPPGPPGNPGTPG 913
Score = 31.2 bits (69), Expect = 4.1
Identities = 12/16 (75%), Positives = 13/16 (81%)
Query: 754 GSPGSPGSPGSPGSPG 769
G G+PGSPGSPG PG
Sbjct: 1098 GPEGAPGSPGSPGLPG 1113
Score = 31.2 bits (69), Expect = 4.1
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PG PG+PG PG G PG
Sbjct: 1360 PGPPGTPGEPGMQGEPG 1376
Score = 31.2 bits (69), Expect = 4.1
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PG+PG PG G PG PG
Sbjct: 1363 PGTPGEPGMQGEPGPPG 1379
Score = 31.2 bits (69), Expect = 4.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 753 PGSPGSPGSPGSPGSPGSV 771
PG PG G PG PG PG++
Sbjct: 1366 PGEPGMQGEPGPPGPPGNL 1384
Score = 30.8 bits (68), Expect = 5.3
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 14/59 (23%)
Query: 752 LPGSPGSPGSPGSPGSPGSVPKNTSQTAAITTKGGLVGLVDYPDDDEDDDEDEDKEDTL 810
+PG G+ G GSPGSPG+ GL G +P D +K +TL
Sbjct: 500 IPGRQGAAGLKGSPGSPGNT--------------GLPGFPGFPGAQGDPGLKGEKGETL 544
Score = 30.8 bits (68), Expect = 5.3
Identities = 15/47 (31%), Positives = 19/47 (40%)
Query: 723 LSGRQSPSFKLSLSSGTKTNLTSQSSTTNLPGSPGSPGSPGSPGSPG 769
+ G Q + S GT+ + LPG G G G PG PG
Sbjct: 1046 IHGLQGDKGEPGYSEGTRPGPPGPTGDPGLPGDMGKKGEMGQPGPPG 1092
Score = 30.4 bits (67), Expect = 6.9
Identities = 12/18 (66%), Positives = 12/18 (66%)
Query: 752 LPGSPGSPGSPGSPGSPG 769
LPG PG PG G PG PG
Sbjct: 184 LPGPPGFPGPVGPPGPPG 201
Score = 30.4 bits (67), Expect = 6.9
Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 16/83 (19%)
Query: 738 GTKTNL--TSQSSTTNLPGSPGSPGS--------PGSPGSPGSVPK--NTSQTAAITTKG 785
GTK +L + LPG PG PG+ PG PG+PG + N+ + I
Sbjct: 715 GTKGSLGCPGKMGEPGLPGKPGLPGAKGEPAVAMPGGPGTPGFPGERGNSGEHGEI---- 770
Query: 786 GLVGLVDYPDDDEDDDEDEDKED 808
GL GL P ++ D + D
Sbjct: 771 GLPGLPGLPGTPGNEGLDGPRGD 793
Score = 30.0 bits (66), Expect = 9.1
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 750 TNLPGSPGSPGSPGSPGSPG 769
T LPG PG PG+ G PG G
Sbjct: 519 TGLPGFPGFPGAQGDPGLKG 538
Score = 30.0 bits (66), Expect = 9.1
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 753 PGSPGSPGSPGSPGSPG 769
PG G PG PG PGSPG
Sbjct: 1133 PGIRGPPGLPGFPGSPG 1149
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,994,960
Number of Sequences: 37866
Number of extensions: 1471615
Number of successful extensions: 26227
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 175
Number of HSP's that attempted gapping in prelim test: 12663
Number of HSP's gapped (non-prelim): 12285
length of query: 820
length of database: 18,247,518
effective HSP length: 111
effective length of query: 709
effective length of database: 14,044,392
effective search space: 9957473928
effective search space used: 9957473928
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.