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Search of human proteins with 31543095
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|31543095 hypothetical protein LOC90050 [Homo sapiens]
(354 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|31543095 hypothetical protein LOC90050 [Homo sapiens] 738 0.0
gi|54873602 hypothetical protein LOC220382 [Homo sapiens] 57 3e-08
gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens] 41 0.002
gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [... 40 0.004
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 40 0.004
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 38 0.012
gi|239741142 PREDICTED: forkhead box protein O6 [Homo sapiens] 35 0.078
gi|66932999 testis-specific protein kinase 1 [Homo sapiens] 35 0.10
gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens] 35 0.10
gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens] 35 0.13
gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens] 35 0.13
gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens] 35 0.13
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 34 0.17
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens] 34 0.23
gi|239752748 PREDICTED: similar to forkhead box O6 [Homo sapiens] 33 0.39
gi|157885806 chromosome 12 open reading frame 51 [Homo sapiens] 33 0.39
gi|239750464 PREDICTED: hypothetical protein XP_002347367 [Homo ... 33 0.51
gi|194018497 FYVE, RhoGEF and PH domain containing 5 [Homo sapiens] 33 0.51
gi|27735129 hypothetical protein LOC148345 [Homo sapiens] 32 0.66
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 32 0.66
gi|5032105 small optic lobes [Homo sapiens] 32 0.66
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 32 0.86
gi|41281821 SH2 domain containing 3C isoform a [Homo sapiens] 32 0.86
gi|5174751 Yes-associated protein 1, 65kDa isoform 2 [Homo sapiens] 32 1.1
gi|194306653 Yes-associated protein 1, 65kDa isoform 1 [Homo sap... 32 1.1
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 32 1.1
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 32 1.1
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 32 1.1
gi|216548627 hairy and enhancer of split 4 isoform 1 [Homo sapiens] 32 1.1
gi|10863967 hairy and enhancer of split 4 isoform 2 [Homo sapiens] 32 1.1
>gi|31543095 hypothetical protein LOC90050 [Homo sapiens]
Length = 354
Score = 738 bits (1904), Expect = 0.0
Identities = 354/354 (100%), Positives = 354/354 (100%)
Query: 1 MPLEERRSSGERNDAAPTNHRRPGEKRTSTAKQVSSVPFLGAAGHQQSLPSSWKASCSGP 60
MPLEERRSSGERNDAAPTNHRRPGEKRTSTAKQVSSVPFLGAAGHQQSLPSSWKASCSGP
Sbjct: 1 MPLEERRSSGERNDAAPTNHRRPGEKRTSTAKQVSSVPFLGAAGHQQSLPSSWKASCSGP 60
Query: 61 LVMASDSDVKMLLNFVNLASSDIKAALDKSAPCRRSVDHRKYLQKQLKRFSQKYSRLPRG 120
LVMASDSDVKMLLNFVNLASSDIKAALDKSAPCRRSVDHRKYLQKQLKRFSQKYSRLPRG
Sbjct: 61 LVMASDSDVKMLLNFVNLASSDIKAALDKSAPCRRSVDHRKYLQKQLKRFSQKYSRLPRG 120
Query: 121 LPGRAAEPYLKRGSEDRPRRLLLDLGPDSSPGGGGGCKEKVLRSPYREECLAKEQLPQRQ 180
LPGRAAEPYLKRGSEDRPRRLLLDLGPDSSPGGGGGCKEKVLRSPYREECLAKEQLPQRQ
Sbjct: 121 LPGRAAEPYLKRGSEDRPRRLLLDLGPDSSPGGGGGCKEKVLRSPYREECLAKEQLPQRQ 180
Query: 181 HPEAAQPGQVPMRKRQLPASFWEEPRPTHSYHVGLEGGLGPREGPPYEGKKNCKGLEPLG 240
HPEAAQPGQVPMRKRQLPASFWEEPRPTHSYHVGLEGGLGPREGPPYEGKKNCKGLEPLG
Sbjct: 181 HPEAAQPGQVPMRKRQLPASFWEEPRPTHSYHVGLEGGLGPREGPPYEGKKNCKGLEPLG 240
Query: 241 PETTLVSMSPRALAEKEPLKMPGVSLVGRVNAWSCCPFQYHGQPIYPGPLGALPQSPVPS 300
PETTLVSMSPRALAEKEPLKMPGVSLVGRVNAWSCCPFQYHGQPIYPGPLGALPQSPVPS
Sbjct: 241 PETTLVSMSPRALAEKEPLKMPGVSLVGRVNAWSCCPFQYHGQPIYPGPLGALPQSPVPS 300
Query: 301 LGLWRKSPAFPGELAHLCKDVDGLGQKVCRPVVLKPIPTKPAVPPPIFNVFGYL 354
LGLWRKSPAFPGELAHLCKDVDGLGQKVCRPVVLKPIPTKPAVPPPIFNVFGYL
Sbjct: 301 LGLWRKSPAFPGELAHLCKDVDGLGQKVCRPVVLKPIPTKPAVPPPIFNVFGYL 354
>gi|54873602 hypothetical protein LOC220382 [Homo sapiens]
Length = 426
Score = 56.6 bits (135), Expect = 3e-08
Identities = 63/221 (28%), Positives = 82/221 (37%), Gaps = 65/221 (29%)
Query: 72 LLNFVNLASSDIKAALDKSAPCRRSVDHRKYLQKQLKRFSQKYSRLPRGLPGRAAEPYLK 131
LL+F++ ASS+IK ALDK +R V+HRKYLQKQ+KR S P G P +A
Sbjct: 66 LLSFIDSASSNIKLALDKPGKSKRKVNHRKYLQKQIKRCSGLMGAAPPGPPSPSAA---- 121
Query: 132 RGSEDRP--RRLLLDLGPD-SSPGGGGGCKEKVLRSPYREECLAKEQLPQ-----RQHPE 183
D P R L P ++P G + L L R P
Sbjct: 122 ----DTPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAAASLQSRSLAALFDSLRHVPG 177
Query: 184 AAQPG------------------------------------QVPMRKRQLPASFWEEPRP 207
A+P +VP+R R LP SF+ EP
Sbjct: 178 GAEPAGGEVAAPAAGLGGAGTGGAGGDVAGPAGATAIPGARKVPLRARNLPPSFFTEPSR 237
Query: 208 THSYHVGLEGGLGPREGPPY------EGKKNCKGLEPLGPE 242
GG GP GP +G + + E LGP+
Sbjct: 238 AGG------GGCGP-SGPDVSLGDLEKGAEAVEFFELLGPD 271
>gi|5031587 adenomatosis polyposis coli 2 [Homo sapiens]
Length = 2303
Score = 40.8 bits (94), Expect = 0.002
Identities = 57/212 (26%), Positives = 75/212 (35%), Gaps = 28/212 (13%)
Query: 120 GLPGRAAEPYLKRGSEDRPRRLLLDLG-PDSSPG-----------GGGGCKEKVLRSPYR 167
G GR+AE RG+ L L LG P S+P G G + L +P
Sbjct: 1446 GGAGRSAEQ--SRGAGKNRAGLELPLGRPPSAPADKDGSKPGRTRGDGALQSLCLTTPTE 1503
Query: 168 EECLAKEQLPQRQHPEAAQPGQVPMRKRQLPASFWEEPRPTHSYHVGLEGGLGPREGPPY 227
E + P AA P R +P +F E RP P PP
Sbjct: 1504 EAVYCFYGNDSDEEPPAAAPTPTHRRTSAIPRAFTRE-RPQGRKEAPAPSKAAPAAPPPA 1562
Query: 228 EGKKNCKGLEPLGPETTLVSMSPRALAEKEPLKMPGVSLVGRVNAWSCCPFQYHGQPIYP 287
+ + E P +S S +L+E EP + P V GR A + P G+ P
Sbjct: 1563 RTQPSLIADET--PPCYSLSSSASSLSEPEPSEPPAVHPRGREPAVTKDPGPGGGRDSSP 1620
Query: 288 GP-----------LGALPQSPVPSLGLWRKSP 308
P ALP+ P GL R+ P
Sbjct: 1621 SPRAAEELLQRCISSALPRRRPPVSGLRRRKP 1652
>gi|24308073 protein tyrosine phosphatase, non-receptor type 23
[Homo sapiens]
Length = 1636
Score = 39.7 bits (91), Expect = 0.004
Identities = 50/197 (25%), Positives = 66/197 (33%), Gaps = 27/197 (13%)
Query: 173 KEQLPQRQHPEAAQPGQVPMRKRQLPASFWEEPR----------PTHSYHVGLEGGLGPR 222
K LP+R+ EA + G P R LP PR P H GP
Sbjct: 724 KPLLPRREESEAVEAGDPPEELRSLPPDMVAGPRLPDTFLGSATPLHFPPSPFPSSTGP- 782
Query: 223 EGPPYEGKKNCKG--------LEPLGPETTLVSMSPRALAEKEPLKMPGVSLVGRVN-AW 273
GP Y G ++P P + ++P P P + LV R +
Sbjct: 783 -GPHYLSGPLPPGTYSGPTQLIQPRAPGPHAMPVAPGPALYPAPAYTPELGLVPRSSPQH 841
Query: 274 SCCPFQYHGQPIYPGPLGALPQSPVPSLGLWRKSPAFPGELAHLCKDVDGLGQKVCRPVV 333
Y G P P+ LP +P P P + VD + +
Sbjct: 842 GVVSSPYVGVGPAP-PVAGLPSAPPPQF----SGPELAMAVRPATTTVDSIQAPIPSHTA 896
Query: 334 LKPIPTKPAVPPPIFNV 350
+P PT PA PPP F V
Sbjct: 897 PRPNPT-PAPPPPCFPV 912
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 39.7 bits (91), Expect = 0.004
Identities = 48/199 (24%), Positives = 69/199 (34%), Gaps = 26/199 (13%)
Query: 115 SRLPRGLPGRAAEPYLKRGSEDRPRRLLLDLGPDSSPGGGGGCKEKVLRSPYREECLAKE 174
SR PR PG+ P + G++ + GP PG G + P K
Sbjct: 87 SRSPRSPPGKPQGPPPQGGNQPQ--------GPPPPPGKPQGPPPQGGNRPQGPPPPGKP 138
Query: 175 QLPQRQHPEAAQPGQVPMRKRQLPASFWEEPRPTHSYHVGLEGGLGPREGPPYEGKKNCK 234
Q P Q ++ P P + + P +P+ G G +GPP +G K +
Sbjct: 139 QGPPPQGDKSRSPRSPPGKPQGPPPQGGNQPQ-------GPPPPPGKPQGPPPQGGKKPQ 191
Query: 235 GLEPLGPETTLVSMSPRALAEKEPLKMPGVSLVGRVNAWSCCPFQYHGQPIYPGPLGALP 294
G P G ++ + + P P P Q QP P P P
Sbjct: 192 GPPPPGKPQGPPPQGDKSRSSQSPPGKPQGP-----------PPQGGNQPQGPPPPPGKP 240
Query: 295 QSPVPSLGLWRKSPAFPGE 313
Q P P G + P PG+
Sbjct: 241 QGPPPQGGNKPQGPPPPGK 259
Score = 32.7 bits (73), Expect = 0.51
Identities = 41/168 (24%), Positives = 55/168 (32%), Gaps = 18/168 (10%)
Query: 146 GPDSSPGGGGGCKEKVLRSPYREECLAKEQLPQRQHPEAAQPGQVPMRKRQLPASFWEEP 205
GP PG G + P K Q P Q ++ P P + + P +P
Sbjct: 49 GPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQP 108
Query: 206 RPTHSYHVGLEGGLGPREGPPYEGKKNCKGLEPLGPETTLVSMSPRALAEKEPLKMPGVS 265
+ G G +GPP +G +G P G P+ + P PG
Sbjct: 109 Q-------GPPPPPGKPQGPPPQGGNRPQGPPPPGKPQ---GPPPQGDKSRSPRSPPGKP 158
Query: 266 LVGRVNAWSCCPFQYHGQPIYPGPLGALPQSPVPSLGLWRKSPAFPGE 313
P Q QP P P PQ P P G + P PG+
Sbjct: 159 --------QGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGK 198
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 38.1 bits (87), Expect = 0.012
Identities = 60/234 (25%), Positives = 78/234 (33%), Gaps = 41/234 (17%)
Query: 118 PRGLPGRAAEPYLKRGSEDRPRRLLLDLGPDSSPGGGGGCKEKVLRSPYREECLAKEQLP 177
P PG+ P + G++ + GP PG G + P K Q P
Sbjct: 50 PPSPPGKPQGPPPQGGNQPQ--------GPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGP 101
Query: 178 QRQHPEAAQPGQVPMRKRQLPASFWEEPR-----PTHSYHVGLEGGLGPREGPPYEGKKN 232
Q ++ P P + + P +P+ P +GG P +GPP GK
Sbjct: 102 PPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKP-QGPPPPGKP- 159
Query: 233 CKGLEPLGPETTLVSMSPRALAEKEPLKMPGVSLVGRVNAWSCCPFQYHGQPIYPGPLGA 292
+G P G + S SP P K G P Q QP P P
Sbjct: 160 -QGPPPQGDNKSRSSRSP-------PGKPQGP------------PPQGGNQPQGPPPPPG 199
Query: 293 LPQSPVPSLGLWRKSPAFPGELAHLCKDVDGLGQKVCRPVVLKPIPTKPAVPPP 346
PQ P P G + P PG+ D Q P P KP PPP
Sbjct: 200 KPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSP------PGKPQGPPP 247
Score = 34.7 bits (78), Expect = 0.13
Identities = 62/238 (26%), Positives = 79/238 (33%), Gaps = 42/238 (17%)
Query: 115 SRLPRGLPGRAAEPYLKRGSEDRPRRLLLDLGPDSSPGGGGGCKEKVLRSPYREECLAKE 174
SR PR PG+ P + G++ + GP PG G + P K
Sbjct: 108 SRSPRSPPGKPQGPPPQGGNQPQ--------GPPPPPGKPQGPPPQGGNKPQGPPPPGKP 159
Query: 175 QLPQRQHPEAAQPGQVPMRKRQLPASFWEE------PRPTHSYHVGLEGGLGPREGPPYE 228
Q P Q ++ + P K Q P P P +GG P +GPP
Sbjct: 160 QGPPPQGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKP-QGPPPP 218
Query: 229 GKKNCKGLEPLGPETTLVSMSPRALAEKEPLKMPGVSLVGRVNAWSCCPFQYHGQPIYPG 288
GK +G P G + + SP P K G P Q QP P
Sbjct: 219 GKP--QGPPPQGDNKSQSARSP-------PGKPQGP------------PPQGGNQPQGPP 257
Query: 289 PLGALPQSPVPSLGLWRKSPAFPGELAHLCKDVDGLGQKVCRPVVLKPIPTKPAVPPP 346
P PQ P P G + P PG K Q + + P KP PPP
Sbjct: 258 PPPGKPQGPPPQGGNKPQGPPPPG------KPQGPPPQGGSKSRSSRSPPGKPQGPPP 309
Score = 33.5 bits (75), Expect = 0.30
Identities = 55/205 (26%), Positives = 69/205 (33%), Gaps = 36/205 (17%)
Query: 115 SRLPRGLPGRAAEPYLKRGSEDRPRRLLLDLGPDSSPGGGGGCKEKVLRSPYREECLAKE 174
SR R PG+ P + G++ + GP PG G + P K
Sbjct: 170 SRSSRSPPGKPQGPPPQGGNQPQ--------GPPPPPGKPQGPPPQGGNKPQGPPPPGKP 221
Query: 175 QLPQRQHPEAAQPGQVPMRKRQLPASFWEE------PRPTHSYHVGLEGGLGPREGPPYE 228
Q P Q +Q + P K Q P P P +GG P +GPP
Sbjct: 222 QGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKP-QGPPPP 280
Query: 229 GKKNCKGLEPLGPETTLVSMSPRALAEKEPLKMPGVSLVGRVNAWSCCPFQYHGQPIYPG 288
GK +G P G + S SP P K G P Q QP P
Sbjct: 281 GKP--QGPPPQGGSKSRSSRSP-------PGKPQGP------------PPQGGNQPQGPP 319
Query: 289 PLGALPQSPVPSLGLWRKSPAFPGE 313
P PQ P P G + P PG+
Sbjct: 320 PPPGKPQGPPPQGGNKPQGPPPPGK 344
>gi|239741142 PREDICTED: forkhead box protein O6 [Homo sapiens]
Length = 492
Score = 35.4 bits (80), Expect = 0.078
Identities = 61/236 (25%), Positives = 86/236 (36%), Gaps = 48/236 (20%)
Query: 131 KRGSEDRPRRLLLDLGPDSSPGGGGGCKEKVLRSPYREECLAKEQLPQRQHPEAAQPGQV 190
K G R R + +D G G K+K L++P E+ P P A PG V
Sbjct: 173 KTGKTPRRRAVSMDNGAKFLRIKGKASKKKQLQAP--------ERSPDDSSPSAPAPGPV 224
Query: 191 PMRKRQLPASFWEEPRPTHSYH-----VGLEGGLGPREGPPYEGKKNCKGLEPLGPETTL 245
P A+ W +H+ GG P G E ++ + LE L P + L
Sbjct: 225 P------AAAKWAASPASHASDDYEAWADFRGGGRPLLGEAAE-LEDDEALEALAPSSPL 277
Query: 246 VSMSPR-----ALAEKEPLKMPGVSLVGRVNAWSCCPFQYHG-------QPIYPGPLGAL 293
+ SP AL + P ++P ++ +G P HG + + G A
Sbjct: 278 MYPSPASALSPALGSRCPGELPRLAELGG-------PLGLHGGGGAGLPEGLLDGAQDAY 330
Query: 294 PQSPVPSLGLWRKSPAF--PGELAHLCKDVDGLGQKVCRPVVLKPIPTKPAVPPPI 347
P P R P PGELA L K P P P++ A+ PI
Sbjct: 331 GPRPAP-----RPGPVLGAPGELA-LAGAAAAYPGKGAAPYA-PPAPSRSALAHPI 379
>gi|66932999 testis-specific protein kinase 1 [Homo sapiens]
Length = 626
Score = 35.0 bits (79), Expect = 0.10
Identities = 51/193 (26%), Positives = 64/193 (33%), Gaps = 46/193 (23%)
Query: 91 APCRRSVDHRKYLQKQLKR--------FSQKYSRLPRGLPGRAA---EPYLKRGSEDRPR 139
AP H +++ +QL + + RG P +P L R D
Sbjct: 302 APFTEITQHLEWILEQLPEPAPLTRTALTHNQGSVARGGPSATLPRPDPRLSRSRSD--- 358
Query: 140 RLLLDLGPDSSPGGGG---------------GCKEKVLRSPYREEC-------LAKEQLP 177
L L P+S P G G K K+L +P + QLP
Sbjct: 359 -LFLPPSPESPPNWGDNLTRVNPFSLREDLRGGKIKLLDTPSKPVLPLVPPSPFPSTQLP 417
Query: 178 QRQHPEA-AQPGQVPMRKRQLPASFWEEPRPTHSYHVGLEGGLGPREGPPYEGKKNCKGL 236
PE QPG R R LP+S P L G P GP E K C+G
Sbjct: 418 LVTTPETLVQPGTPARRCRSLPSS----PELPRRMETALPGPGPPAVGPSAEEKMECEGS 473
Query: 237 ----EPLGPETTL 245
EP GP L
Sbjct: 474 SPEPEPPGPAPQL 486
>gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens]
Length = 2217
Score = 35.0 bits (79), Expect = 0.10
Identities = 36/116 (31%), Positives = 46/116 (39%), Gaps = 11/116 (9%)
Query: 233 CKGLEPLGPETTLVSMSPRALAEKEPLKMPGVSLVGRVNAWSCCP-FQYHGQPIYPGP-L 290
C P+ L P A ++P PG+ VG V A +C P Q H +P P +
Sbjct: 650 CVCSPPVSEGPVLPQSLPSLGAYQQPTAAPGLP-VGSVPAPACPPSLQQH----FPDPAM 704
Query: 291 GALPQSPVPSLGLWRKSPAFPGELAHLCKDVDGLGQKVCRPVVLKPIPTKPAVPPP 346
P P PS + P PG+ A + L Q P VL P P P P P
Sbjct: 705 SFAPVLPPPSTPM----PTGPGQPAPPGQQPPPLAQPTPLPQVLAPQPVVPLQPVP 756
>gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]
Length = 655
Score = 34.7 bits (78), Expect = 0.13
Identities = 59/215 (27%), Positives = 73/215 (33%), Gaps = 48/215 (22%)
Query: 118 PRGLPGRAAEPYLKRGSEDRPRRLLLDLGPDSSPGGGGGCKEKVLRSPYREECLAKEQLP 177
PRG PG+ RG P +G D PG G + L P + P
Sbjct: 137 PRGPPGQPGT----RGFPGFPG----PIGLDGKPGHPGPKGDMGLTGP------PGQPGP 182
Query: 178 QRQHPEAAQPGQVPMRKRQLPASFWEEPRPTHSY-------HVGLEGGLGP--REGPP-- 226
Q Q E Q G+ P R Q AS P P H GL G +GP GPP
Sbjct: 183 QGQKGEKGQCGEYPHRGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGP 242
Query: 227 --------YEGKKNCKGLEPL--------GPETTLVSMS-----PRALAEKEPLKMPGV- 264
Y G+K +G+ + P + M P EK PG+
Sbjct: 243 KGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLP 302
Query: 265 SLVGRVNAWSCCPFQYHGQPIYPGPLGALPQSPVP 299
L+G+ G PGP G LP P P
Sbjct: 303 GLLGQKGEKGDAGNSIGGGRGEPGPPG-LPGPPGP 336
>gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens]
Length = 664
Score = 34.7 bits (78), Expect = 0.13
Identities = 59/215 (27%), Positives = 73/215 (33%), Gaps = 48/215 (22%)
Query: 118 PRGLPGRAAEPYLKRGSEDRPRRLLLDLGPDSSPGGGGGCKEKVLRSPYREECLAKEQLP 177
PRG PG+ RG P +G D PG G + L P + P
Sbjct: 146 PRGPPGQPGT----RGFPGFPG----PIGLDGKPGHPGPKGDMGLTGP------PGQPGP 191
Query: 178 QRQHPEAAQPGQVPMRKRQLPASFWEEPRPTHSY-------HVGLEGGLGP--REGPP-- 226
Q Q E Q G+ P R Q AS P P H GL G +GP GPP
Sbjct: 192 QGQKGEKGQCGEYPHRGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGP 251
Query: 227 --------YEGKKNCKGLEPL--------GPETTLVSMS-----PRALAEKEPLKMPGV- 264
Y G+K +G+ + P + M P EK PG+
Sbjct: 252 KGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLP 311
Query: 265 SLVGRVNAWSCCPFQYHGQPIYPGPLGALPQSPVP 299
L+G+ G PGP G LP P P
Sbjct: 312 GLLGQKGEKGDAGNSIGGGRGEPGPPG-LPGPPGP 345
>gi|22027591 alpha 1 type XIII collagen isoform 10 [Homo sapiens]
Length = 676
Score = 34.7 bits (78), Expect = 0.13
Identities = 59/215 (27%), Positives = 73/215 (33%), Gaps = 48/215 (22%)
Query: 118 PRGLPGRAAEPYLKRGSEDRPRRLLLDLGPDSSPGGGGGCKEKVLRSPYREECLAKEQLP 177
PRG PG+ RG P +G D PG G + L P + P
Sbjct: 158 PRGPPGQPGT----RGFPGFPG----PIGLDGKPGHPGPKGDMGLTGP------PGQPGP 203
Query: 178 QRQHPEAAQPGQVPMRKRQLPASFWEEPRPTHSY-------HVGLEGGLGP--REGPP-- 226
Q Q E Q G+ P R Q AS P P H GL G +GP GPP
Sbjct: 204 QGQKGEKGQCGEYPHRGEQSQASIQGPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGP 263
Query: 227 --------YEGKKNCKGLEPL--------GPETTLVSMS-----PRALAEKEPLKMPGV- 264
Y G+K +G+ + P + M P EK PG+
Sbjct: 264 KGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGSPGLP 323
Query: 265 SLVGRVNAWSCCPFQYHGQPIYPGPLGALPQSPVP 299
L+G+ G PGP G LP P P
Sbjct: 324 GLLGQKGEKGDAGNSIGGGRGEPGPPG-LPGPPGP 357
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 34.3 bits (77), Expect = 0.17
Identities = 50/184 (27%), Positives = 71/184 (38%), Gaps = 27/184 (14%)
Query: 142 LLDLGPDSSPGGGGGCKEK-VLRSPYREECLAK--EQLPQRQHPEAAQPGQV--PMRKRQ 196
+L+ G +PG E L SP REE + + E P R+ +A + G++ P +
Sbjct: 957 VLENGDQRAPGIEEKAAENGALGSPEREEKVLENGELTPPRREEKALENGELRSPEAGEK 1016
Query: 197 LPASFWEEPRPTHSYHVGLEGGLG-PR--EGPPYEGKKNCKGL-----EPLGPETTLVSM 248
+ + P P V GGL PR E PP G G E GP T+
Sbjct: 1017 VLVNGGLTP-PKSEDKVSENGGLRFPRNTERPPETGPWRAPGPWEKTPESWGPAPTIGEP 1075
Query: 249 SPRALAEKEPLKMPGVSLVGRVNAWSCCPFQYHGQPIYPGPLGALPQSPVPSLGLWRKSP 308
+P E+ P VS +G PGPLG P++ G R++P
Sbjct: 1076 APETSLERAPAPSAVVS-------------SRNGGETAPGPLGPAPKNGTLEPGTERRAP 1122
Query: 309 AFPG 312
G
Sbjct: 1123 ETGG 1126
>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
Length = 1388
Score = 33.9 bits (76), Expect = 0.23
Identities = 36/109 (33%), Positives = 45/109 (41%), Gaps = 9/109 (8%)
Query: 207 PTHSYHVGLEGGLGPREGPPYEGKKNCKGLEPLGPETTLVSMSPRALAEKEPLKMPGVSL 266
P HVG++G GP+ G+K G E GP + P A AE E + S
Sbjct: 549 PAQREHVGMKGQAGPK------GEKGDAGEELPGPPEPSGPVGPTAGAEAEGSGLGWGSD 602
Query: 267 VGRVNAWSCCPFQ-YHGQPIYPGPLGALPQSP-VPSLGLWRKSPAFPGE 313
VG + Q G P PGP G LP P P ++ P PGE
Sbjct: 603 VGSGSGDLVGSEQLLRGPPGPPGPPG-LPGIPGKPGTDVFMGPPGSPGE 650
>gi|239752748 PREDICTED: similar to forkhead box O6 [Homo sapiens]
Length = 562
Score = 33.1 bits (74), Expect = 0.39
Identities = 39/148 (26%), Positives = 59/148 (39%), Gaps = 25/148 (16%)
Query: 131 KRGSEDRPRRLLLDLGPDSSPGGGGGCKEKVLRSPYREECLAKEQLPQRQHPEAAQPGQV 190
K G R R + +D G G K+K L++P E+ P P A PG V
Sbjct: 350 KTGKTPRRRAVSMDNGAKFLRIKGKASKKKQLQAP--------ERSPDDSSPSAPAPGPV 401
Query: 191 PMRKRQLPASFWEEPRPTHSYH-----VGLEGGLGPREGPPYEGKKNCKGLEPLGPETTL 245
P A+ W +H+ GG P G E ++ + LE L P + L
Sbjct: 402 P------AAAKWAASPASHASDDYEAWADFRGGGRPLLGEAAE-LEDDEALEALAPSSPL 454
Query: 246 VSMSPR-----ALAEKEPLKMPGVSLVG 268
+ SP AL + P ++P ++ +G
Sbjct: 455 MYPSPASALSPALGSRCPGELPRLAELG 482
Score = 31.2 bits (69), Expect = 1.5
Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 20/81 (24%)
Query: 86 ALDKSAPCRRSVDHRKYLQKQLKRFSQKYSRLPRGLPGRA-----AEPYLKRGSEDRPRR 140
AL + APC R+ H +Q ++ LPR PGRA PY K S RP R
Sbjct: 120 ALTRQAPCLRASAHGAPRLRQ-----RRQGPLPRASPGRANPGASRPPYTKPPSPPRPSR 174
Query: 141 L----------LLDLGPDSSP 151
+D+ PD +P
Sbjct: 175 AGPWAAKLRAHHVDVDPDFAP 195
>gi|157885806 chromosome 12 open reading frame 51 [Homo sapiens]
Length = 3996
Score = 33.1 bits (74), Expect = 0.39
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 13/105 (12%)
Query: 100 RKYLQKQLKRFSQKYSRLPRGLPGRAAEPYLKRGSEDRPRRLLLDLGPDSSPGGGGGCKE 159
+K L+ QL + +KY +P+ P Y K G E P +++ P + P K+
Sbjct: 3306 KKVLEDQLTQILRKYG-VPK--PKFDKSKYSKAGKEQHPVKVVSTKRPITKPPA----KD 3358
Query: 160 KVLRSPYREECLA------KEQLPQRQHPEAAQPGQVPMRKRQLP 198
K + + L+ K + P++ P+ P + P +K+++P
Sbjct: 3359 KAVLNSVSRTALSEKKPTVKPKSPEKSKPDEKDPEKSPTKKQEVP 3403
>gi|239750464 PREDICTED: hypothetical protein XP_002347367 [Homo
sapiens]
Length = 118
Score = 32.7 bits (73), Expect = 0.51
Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 19/118 (16%)
Query: 116 RLPRGLPGRAAEPYLKRGSEDRPRRLLLDLGPDSSPGGGGGCKEKVLRSPYREECLAKEQ 175
RLPR PG + P RG + RP+++ + GG + ++ +P R + +++
Sbjct: 10 RLPRPRPGGLSAPSCSRGHQQRPKQVAV-----------GGQRRRLRATPTRPKSSVRQE 58
Query: 176 LPQRQHPEAAQPGQVPMRKRQLPAS---FW--EEPRPTHSYHVGLEGGLGPREGPPYE 228
+ + + +A P R+R++ + W + P + G E + RE P E
Sbjct: 59 VKREINFHSAAPA---CRRREIKVTGQGLWGGNDLPPRSNDSSGGEEAVSAREAAPGE 113
>gi|194018497 FYVE, RhoGEF and PH domain containing 5 [Homo sapiens]
Length = 1462
Score = 32.7 bits (73), Expect = 0.51
Identities = 30/141 (21%), Positives = 51/141 (36%), Gaps = 20/141 (14%)
Query: 138 PRRLLLDLGPD---SSPGGGGGCKE--KVLRSPYREECLAKEQLPQRQHPEAAQPGQVPM 192
P + + GP+ S+PG GG +E K L S + A LP + P +
Sbjct: 494 PETVPEETGPEAGSSAPGIGGAAEEVGKTLLSLEGKPLEASRALPAKPRAFTLYPRSFSV 553
Query: 193 RKRQLPASFWEEPRPTH---------------SYHVGLEGGLGPREGPPYEGKKNCKGLE 237
R++P S ++EP + S +G G R P G +
Sbjct: 554 EGREIPVSVYQEPEGSGLDDHRIKRKEDNLSLSCVIGSSGSFSQRNHLPSSGTSTPSSMV 613
Query: 238 PLGPETTLVSMSPRALAEKEP 258
+ P L ++ + + + P
Sbjct: 614 DIPPPFDLACITKKPITKSSP 634
>gi|27735129 hypothetical protein LOC148345 [Homo sapiens]
Length = 656
Score = 32.3 bits (72), Expect = 0.66
Identities = 62/241 (25%), Positives = 83/241 (34%), Gaps = 35/241 (14%)
Query: 123 GRAAEPYLKRGSEDRPRRLLLD--LGP---DSSPGGGGGCKEKVLRSPYREECLAKEQLP 177
G AA+ +L R RP L LGP + P G +L + ++ P
Sbjct: 242 GPAAQEWLSRDLLHRPSDALAKKGLGPFLQTAKPARRGQTSASIL-----PRVVQAQRGP 296
Query: 178 QRQHPEAAQPGQVPMRKRQLP--------ASFWEEPRPTHSYHVGLE---GGLGPREGPP 226
Q EA PG P LP AS W PRP H L PP
Sbjct: 297 QPPPGEAGIPGH-PTPPATLPSEPVEGVQASPWR-PRPVLPTHPALTLPVSSDASSPSPP 354
Query: 227 YEGKKNCKGLEPLGPETTLVSMSPRALAEKEPLKMPGVSLV--GRVNAWSCCPFQYHGQP 284
+ + L GP TL E++P K PG L+ G + P G+P
Sbjct: 355 APRPERPESLLVSGPSVTLTEGLGTVRPEQDPAKSPGSPLLLRGLSSGDVAAPEPIMGEP 414
Query: 285 IYPGPLGALPQSPVPSLGLWRKSPAFPGELAHLCKDVDGLGQKVCRPV-VLKPIPTKPAV 343
G + P WR + A ++H G Q+ C V +P T P +
Sbjct: 415 ------GQASEEFQPLARPWRATLAAEELVSHRS---PGEPQETCSGTEVERPRQTGPGL 465
Query: 344 P 344
P
Sbjct: 466 P 466
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 32.3 bits (72), Expect = 0.66
Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 20/128 (15%)
Query: 146 GPDSSPGGGGGCK---EKVLRSPYREECLAKEQLPQRQHPE-------AAQPGQVPMRKR 195
GP+SSP GG C+ L +P ++ +A R+H E + + G +
Sbjct: 2798 GPESSPPIGGPCEAAPSSSLPTPPQQPFIA------RRHIELGVTGGGSPENGDGALLAI 2851
Query: 196 QLPASFWEEPRPTHSYHVGLEGGLGPREGPPYEGKKNCKGLEPL-GPETTLVS---MSPR 251
PA RP + G G E P K G +P+ GPET +V+ + P+
Sbjct: 2852 TPPAVKRRRGRPPKKNRSPADAGRGVDEAPSSTLKGKTNGADPVPGPETLIVADPVLEPQ 2911
Query: 252 ALAEKEPL 259
+ +PL
Sbjct: 2912 LIPGPQPL 2919
>gi|5032105 small optic lobes [Homo sapiens]
Length = 1086
Score = 32.3 bits (72), Expect = 0.66
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 12/67 (17%)
Query: 275 CCPFQYHGQPIYPGPLGALPQSPVPSLGLWRKSPAFPGELAHLCKDVDGLGQKVCRPVVL 334
CC F + G P+ P PQ+ PS G+ R SP PG + L R V++
Sbjct: 895 CCAFNHWGPPLPGTPA---PQASSPSAGVPRASPEPPGHV---------LAVYSSRLVMV 942
Query: 335 KPIPTKP 341
+P+ +P
Sbjct: 943 EPVEAQP 949
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 32.0 bits (71), Expect = 0.86
Identities = 33/107 (30%), Positives = 42/107 (39%), Gaps = 21/107 (19%)
Query: 209 HSYHVGLEGGLGPREGPPYEGKKNCKGLEPLGPETTLVSMSPRALAEKEPLKMPGVSLVG 268
H H GLEG G P +G+ P GP + + PR MPG G
Sbjct: 301 HRGHKGLEGPKGEVGAPGSKGEAG-----PTGPMGAMGPLGPRG--------MPGER--G 345
Query: 269 RVNAWSCCPFQY--HGQPIYPGPLGALPQSPVPSLGLWRKSPAFPGE 313
R+ P Q HG P PGP+G L +P + +P GE
Sbjct: 346 RLGPQGA-PGQRGAHGMPGKPGPMGPL---GIPGSSGFPGNPGMKGE 388
>gi|41281821 SH2 domain containing 3C isoform a [Homo sapiens]
Length = 860
Score = 32.0 bits (71), Expect = 0.86
Identities = 46/181 (25%), Positives = 65/181 (35%), Gaps = 31/181 (17%)
Query: 109 RFSQKYSRLPRGLPGRAAEPYLKRGSEDRPRRLLLDLGPDSSPGGGGGCKEKVLRSPYRE 168
R S YS + G P +K+ + R + GP + GG L + +
Sbjct: 69 RSSDMYSHM-----GTMPRPSIKKAQNSQAARQAQEAGPKPNLVPGGVPDPPGLEAA--K 121
Query: 169 ECLAKEQLPQRQHPEAA-QPGQV---PMRKRQLPASFWEEPRPTHSYHVGLEGGLGPREG 224
E + K P P P V P+RK ++P EE RP H G P G
Sbjct: 122 EVMVKATGPLEDTPAMEPNPSAVEVDPIRKPEVPTGDVEEERPPRDVHSERAAG-EPEAG 180
Query: 225 PPYEGKKNCKGLEPLGPETTLVSMSPRALAE--KEPLKMPGVSLVGRVNAWSCCPFQYHG 282
Y E ++ SP L + +E LK+ L R +AW YHG
Sbjct: 181 SDY---------VKFSKEKYILDSSPEKLHKELEEELKLSSTDL--RSHAW------YHG 223
Query: 283 Q 283
+
Sbjct: 224 R 224
>gi|5174751 Yes-associated protein 1, 65kDa isoform 2 [Homo sapiens]
Length = 454
Score = 31.6 bits (70), Expect = 1.1
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 181 HPEAAQ-PGQVPMRKRQLPASFWEEPRP-THSYHVGLEGG 218
+P+ A P VPMR R+LP SF++ P P +HS + G
Sbjct: 74 NPKTANVPQTVPMRLRKLPDSFFKPPEPKSHSRQASTDAG 113
>gi|194306653 Yes-associated protein 1, 65kDa isoform 1 [Homo
sapiens]
Length = 504
Score = 31.6 bits (70), Expect = 1.1
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 181 HPEAAQ-PGQVPMRKRQLPASFWEEPRP-THSYHVGLEGG 218
+P+ A P VPMR R+LP SF++ P P +HS + G
Sbjct: 74 NPKTANVPQTVPMRLRKLPDSFFKPPEPKSHSRQASTDAG 113
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 31.6 bits (70), Expect = 1.1
Identities = 48/186 (25%), Positives = 62/186 (33%), Gaps = 28/186 (15%)
Query: 120 GLPGRAAEPYLKRGSEDRPRRLLLDLGPDSSPGGGGGCKEKVLRSPYREECLAKEQLPQR 179
G PG+ P E+ P L GP SPG G K + + P
Sbjct: 1211 GEPGQPGSP--GPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVG 1268
Query: 180 QHPEAAQPGQVPMRKRQLPASFWEEPRPTHSYHVGLEGGLGPREGPPYEGKKNCKG---- 235
A +PG P R LP S ++ RP + G G +GP P G KG
Sbjct: 1269 PAGPAGKPG--PDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGH 1326
Query: 236 ---LEPLGPETTLVSMSPRAL-------AEKEPLKMPGVSLVGRVNAWSCCPFQYHGQPI 285
+ +GP R L +K + +PG S P G P
Sbjct: 1327 PGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGAS----------GPIGPGGPPG 1376
Query: 286 YPGPLG 291
PGP G
Sbjct: 1377 LPGPAG 1382
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 31.6 bits (70), Expect = 1.1
Identities = 48/186 (25%), Positives = 62/186 (33%), Gaps = 28/186 (15%)
Query: 120 GLPGRAAEPYLKRGSEDRPRRLLLDLGPDSSPGGGGGCKEKVLRSPYREECLAKEQLPQR 179
G PG+ P E+ P L GP SPG G K + + P
Sbjct: 1190 GEPGQPGSP--GPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVG 1247
Query: 180 QHPEAAQPGQVPMRKRQLPASFWEEPRPTHSYHVGLEGGLGPREGPPYEGKKNCKG---- 235
A +PG P R LP S ++ RP + G G +GP P G KG
Sbjct: 1248 PAGPAGKPG--PDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGH 1305
Query: 236 ---LEPLGPETTLVSMSPRAL-------AEKEPLKMPGVSLVGRVNAWSCCPFQYHGQPI 285
+ +GP R L +K + +PG S P G P
Sbjct: 1306 PGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGAS----------GPIGPGGPPG 1355
Query: 286 YPGPLG 291
PGP G
Sbjct: 1356 LPGPAG 1361
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 31.6 bits (70), Expect = 1.1
Identities = 48/186 (25%), Positives = 62/186 (33%), Gaps = 28/186 (15%)
Query: 120 GLPGRAAEPYLKRGSEDRPRRLLLDLGPDSSPGGGGGCKEKVLRSPYREECLAKEQLPQR 179
G PG+ P E+ P L GP SPG G K + + P
Sbjct: 1297 GEPGQPGSP--GPTGENGPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVG 1354
Query: 180 QHPEAAQPGQVPMRKRQLPASFWEEPRPTHSYHVGLEGGLGPREGPPYEGKKNCKG---- 235
A +PG P R LP S ++ RP + G G +GP P G KG
Sbjct: 1355 PAGPAGKPG--PDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKGH 1412
Query: 236 ---LEPLGPETTLVSMSPRAL-------AEKEPLKMPGVSLVGRVNAWSCCPFQYHGQPI 285
+ +GP R L +K + +PG S P G P
Sbjct: 1413 PGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGAS----------GPIGPGGPPG 1462
Query: 286 YPGPLG 291
PGP G
Sbjct: 1463 LPGPAG 1468
>gi|216548627 hairy and enhancer of split 4 isoform 1 [Homo sapiens]
Length = 247
Score = 31.6 bits (70), Expect = 1.1
Identities = 37/134 (27%), Positives = 49/134 (36%), Gaps = 24/134 (17%)
Query: 192 MRKRQLPASFWEEPRPTHSYHVGLEGGLGPR-------EGPPYEGKKNCKG-----LEPL 239
+R+ Q+ A+ +P Y G L EG P + + G L L
Sbjct: 117 LRRVQVTAALSADPAVLGKYRAGFHECLAEVNRFLAGCEGVPADVRSRLLGHLAACLRQL 176
Query: 240 GPETTLVSMSPRALAEKE-PLKMPGVSLVGRVNAWSCCPFQYHGQPIYPGPLGALPQSPV 298
GP S+SP A AE P G L+ + PF P+ PG ALP +P
Sbjct: 177 GPSRRPASLSPAAPAEAPAPEVYAGRPLLPSLGG----PFPLLAPPLLPGLTRALPAAP- 231
Query: 299 PSLGLWRKSPAFPG 312
R P PG
Sbjct: 232 ------RAGPQGPG 239
>gi|10863967 hairy and enhancer of split 4 isoform 2 [Homo sapiens]
Length = 221
Score = 31.6 bits (70), Expect = 1.1
Identities = 37/134 (27%), Positives = 49/134 (36%), Gaps = 24/134 (17%)
Query: 192 MRKRQLPASFWEEPRPTHSYHVGLEGGLGPR-------EGPPYEGKKNCKG-----LEPL 239
+R+ Q+ A+ +P Y G L EG P + + G L L
Sbjct: 91 LRRVQVTAALSADPAVLGKYRAGFHECLAEVNRFLAGCEGVPADVRSRLLGHLAACLRQL 150
Query: 240 GPETTLVSMSPRALAEKE-PLKMPGVSLVGRVNAWSCCPFQYHGQPIYPGPLGALPQSPV 298
GP S+SP A AE P G L+ + PF P+ PG ALP +P
Sbjct: 151 GPSRRPASLSPAAPAEAPAPEVYAGRPLLPSLGG----PFPLLAPPLLPGLTRALPAAP- 205
Query: 299 PSLGLWRKSPAFPG 312
R P PG
Sbjct: 206 ------RAGPQGPG 213
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.136 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,483,468
Number of Sequences: 37866
Number of extensions: 1121176
Number of successful extensions: 4166
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 104
Number of HSP's that attempted gapping in prelim test: 4067
Number of HSP's gapped (non-prelim): 196
length of query: 354
length of database: 18,247,518
effective HSP length: 103
effective length of query: 251
effective length of database: 14,347,320
effective search space: 3601177320
effective search space used: 3601177320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.