Guide to the Human Genome
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Name: LOC100291539 Sequence: fasta or formatted (118aa) NCBI GI: 239750464
Description:

PREDICTED: hypothetical protein XP_002347367

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.2         12           2
 C cysteine            1.7          2           1
 D aspartate           1.7          2           1
 E glutamate           6.8          8           2
 F phenylalanine       0.8          1           1
 G glycine            11.0         13           2
 H histidine           1.7          2           1
 I isoleucine          1.7          2           1
 K lysine              3.4          4           1
 L leucine             5.1          6           1
 M methionine          0.8          1           1
 N asparagine          2.5          3           1
 P proline            13.6         16           2
 Q glutamine           5.1          6           2
 R arginine           14.4         17           3
 S serine             10.2         12           2
 T threonine           3.4          4           1
 V valine              5.1          6           1
 W tryptophan          0.8          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347367 
CIC                   0.041   capicua homolog 
LOC100290263          0.037   PREDICTED: hypothetical protein XP_002347916 
LOC728431             0.037   PREDICTED: hypothetical protein 
LOC645321             0.037   PREDICTED: hypothetical protein 
LOC728431             0.037   PREDICTED: hypothetical protein 
LOC645321             0.037   PREDICTED: hypothetical protein 
LOC728431             0.037   PREDICTED: hypothetical protein 
SYN1                  0.037   synapsin I isoform Ia 
SYN1                  0.037   synapsin I isoform Ib 
PRR12                 0.037   proline rich 12 
FAM181A               0.037   hypothetical protein LOC90050 
CABLES2               0.037   Cdk5 and Abl enzyme substrate 2 
C12orf61              0.037   hypothetical protein LOC283416 
FOS                   0.032   v-fos FBJ murine osteosarcoma viral oncogene homolog ...
LOC100127891          0.032   PREDICTED: hypothetical protein 
LOC100289408          0.032   PREDICTED: hypothetical protein 
LOC100289408          0.032   PREDICTED: hypothetical protein XP_002344217 
MLL2                  0.032   myeloid/lymphoid or mixed-lineage leukemia 2 
BAZ1A                 0.032   bromodomain adjacent to zinc finger domain, 1A isofo...
BAZ1A                 0.032   bromodomain adjacent to zinc finger domain, 1A isofo...
KLRG2                 0.032   killer cell lectin-like receptor subfamily G, member...
LOC388780             0.027   PREDICTED: hypothetical protein 
LOC100291890          0.027   PREDICTED: hypothetical protein XP_002344521 
LOC388780             0.027   PREDICTED: hypothetical protein 
LOC100289901          0.027   PREDICTED: hypothetical protein XP_002347167 
LOC100288618          0.027   PREDICTED: hypothetical protein XP_002344285 
SNAPC4                0.027   small nuclear RNA activating complex, polypeptide 4,...
DBP                   0.023   D site of albumin promoter (albumin D-box) binding p...
LOC100293662          0.023   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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