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Search of human proteins with 31542507
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|31542507 HORMA domain containing 1 [Homo sapiens]
(394 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|31542507 HORMA domain containing 1 [Homo sapiens] 794 0.0
gi|22749067 HORMA domain containing 2 [Homo sapiens] 270 2e-72
gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo s... 42 0.001
gi|156104908 myosin heavy chain 6 [Homo sapiens] 40 0.003
gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1 ... 40 0.004
gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2 ... 40 0.004
gi|44680105 caldesmon 1 isoform 1 [Homo sapiens] 39 0.011
gi|151101151 coiled-coil domain containing 2 isoform b [Homo sap... 39 0.011
gi|151101140 coiled-coil domain containing 2 isoform a [Homo sap... 39 0.011
gi|151105223 coiled-coil domain containing 2 isoform a [Homo sap... 39 0.011
gi|151105229 coiled-coil domain containing 2 isoform a [Homo sap... 39 0.011
gi|94681063 bromodomain adjacent to zinc finger domain, 2B [Homo... 39 0.011
gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens] 39 0.011
gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens] 38 0.014
gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens] 38 0.014
gi|17975763 myelin transcription factor 1 [Homo sapiens] 37 0.024
gi|71061468 centromere protein E [Homo sapiens] 37 0.024
gi|6005757 chromatin-specific transcription elongation factor la... 37 0.031
gi|153792284 pote protein [Homo sapiens] 37 0.031
gi|239747116 PREDICTED: hypothetical protein XP_002343915 isofor... 37 0.031
gi|239747114 PREDICTED: hypothetical protein XP_002343914 isofor... 37 0.031
gi|110611903 myosin, heavy polypeptide 4, skeletal muscle [Homo ... 37 0.031
gi|24415404 MDN1, midasin homolog [Homo sapiens] 37 0.031
gi|21735569 claspin [Homo sapiens] 37 0.040
gi|55953110 retinoblastoma protein-binding zinc finger protein i... 37 0.040
gi|20336260 retinoblastoma protein-binding zinc finger protein i... 37 0.040
gi|20336258 retinoblastoma protein-binding zinc finger protein i... 37 0.040
gi|145279222 WD repeat domain 66 [Homo sapiens] 37 0.040
gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo... 36 0.053
gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo... 36 0.053
>gi|31542507 HORMA domain containing 1 [Homo sapiens]
Length = 394
Score = 794 bits (2050), Expect = 0.0
Identities = 394/394 (100%), Positives = 394/394 (100%)
Query: 1 MATAQLQRTPMSALVFPNKISTEHQSLVLVKRLLAVSVSCITYLRGIFPECAYGTRYLDD 60
MATAQLQRTPMSALVFPNKISTEHQSLVLVKRLLAVSVSCITYLRGIFPECAYGTRYLDD
Sbjct: 1 MATAQLQRTPMSALVFPNKISTEHQSLVLVKRLLAVSVSCITYLRGIFPECAYGTRYLDD 60
Query: 61 LCVKILREDKNCPGSTQLVKWMLGCYDALQKKYLRMVVLAVYTNPEDPQTISECYQFKFK 120
LCVKILREDKNCPGSTQLVKWMLGCYDALQKKYLRMVVLAVYTNPEDPQTISECYQFKFK
Sbjct: 61 LCVKILREDKNCPGSTQLVKWMLGCYDALQKKYLRMVVLAVYTNPEDPQTISECYQFKFK 120
Query: 121 YTNNGPLMDFISKNQSNESSMLSTDTKKASILLIRKIYILMQNLGPLPNDVCLTMKLFYY 180
YTNNGPLMDFISKNQSNESSMLSTDTKKASILLIRKIYILMQNLGPLPNDVCLTMKLFYY
Sbjct: 121 YTNNGPLMDFISKNQSNESSMLSTDTKKASILLIRKIYILMQNLGPLPNDVCLTMKLFYY 180
Query: 181 DEVTPPDYQPPGFKDGDCEGVIFEGEPMYLNVGEVSTPFHIFKVKVTTERERMENIDSTI 240
DEVTPPDYQPPGFKDGDCEGVIFEGEPMYLNVGEVSTPFHIFKVKVTTERERMENIDSTI
Sbjct: 181 DEVTPPDYQPPGFKDGDCEGVIFEGEPMYLNVGEVSTPFHIFKVKVTTERERMENIDSTI 240
Query: 241 LSPKQIKTPFQKILRDKDVEDEQEHYTSDDLDIETKMEEQEKNPASSELEEPSLVCEEDE 300
LSPKQIKTPFQKILRDKDVEDEQEHYTSDDLDIETKMEEQEKNPASSELEEPSLVCEEDE
Sbjct: 241 LSPKQIKTPFQKILRDKDVEDEQEHYTSDDLDIETKMEEQEKNPASSELEEPSLVCEEDE 300
Query: 301 IMRSKESPDLSISHSQVEQLVNKTSELDMSESKTRSGKVFQNKMANGNQPVKSSKENRKR 360
IMRSKESPDLSISHSQVEQLVNKTSELDMSESKTRSGKVFQNKMANGNQPVKSSKENRKR
Sbjct: 301 IMRSKESPDLSISHSQVEQLVNKTSELDMSESKTRSGKVFQNKMANGNQPVKSSKENRKR 360
Query: 361 SQHESGRIVLHHFDSSSQESVPKRRKFSEPKEHI 394
SQHESGRIVLHHFDSSSQESVPKRRKFSEPKEHI
Sbjct: 361 SQHESGRIVLHHFDSSSQESVPKRRKFSEPKEHI 394
>gi|22749067 HORMA domain containing 2 [Homo sapiens]
Length = 307
Score = 270 bits (690), Expect = 2e-72
Identities = 136/248 (54%), Positives = 180/248 (72%), Gaps = 8/248 (3%)
Query: 1 MATAQLQRT-----PMSALVFPNKISTEHQSLVLVKRLLAVSVSCITYLRGIFPECAYGT 55
MATAQL VFP++I+ EH+SL +VK+L A S+SCITYLRG+FPE +YG
Sbjct: 1 MATAQLSHCITIHKASKETVFPSQITNEHESLKMVKKLFATSISCITYLRGLFPESSYGE 60
Query: 56 RYLDDLCVKILREDKNCPGSTQLVKWMLGCYDALQKKYLRMVVLAVYTNPEDPQTISECY 115
R+LDDL +KILREDK CPGS +++W+ GC+DAL+K+YLRM VL +YT+P + ++E Y
Sbjct: 61 RHLDDLSLKILREDKKCPGSLHIIRWIQGCFDALEKRYLRMAVLTLYTDPMGSEKVTEMY 120
Query: 116 QFKFKYTNNGPLMDFISKNQSN--ESSMLSTDTKKASILLIRKIYILMQNLGPLPNDVCL 173
QFKFKYT G MDF S + S ES + D KKAS+LLIRK+YILMQ+L PLPN+V L
Sbjct: 121 QFKFKYTKEGATMDFDSHSSSTSFESGTNNEDIKKASVLLIRKLYILMQDLEPLPNNVVL 180
Query: 174 TMKLFYYDEVTPPDYQPPGFKDG-DCEGVIFEGEPMYLNVGEVSTPFHIFKVKVTTERER 232
TMKL YY+ VTP DYQP GFK+G + ++F+ EP+ + VG VST FH KVKV TE +
Sbjct: 181 TMKLHYYNAVTPHDYQPLGFKEGVNSHFLLFDKEPINVQVGFVSTGFHSMKVKVMTEATK 240
Query: 233 MENIDSTI 240
+ ++++ +
Sbjct: 241 VIDLENNL 248
>gi|115496169 myosin, heavy chain 7, cardiac muscle, beta [Homo
sapiens]
Length = 1935
Score = 41.6 bits (96), Expect = 0.001
Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 14/125 (11%)
Query: 244 KQIKTPFQKILRDKDVEDEQEHYTSDDLDIETKMEEQEKNPASSELEEPSLVCEEDEIMR 303
KQ+K+ Q +L+D ++ + +DDL + E+ N +ELEE V E+ E R
Sbjct: 1641 KQVKS-LQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAELEELRAVVEQTERSR 1699
Query: 304 S-------KESPDLSISHSQVEQLVNKTSELDMSESKTRSGKVFQNKMANGNQPVKSSKE 356
+ S + + HSQ L+N+ ++D S+ Q ++ Q ++++E
Sbjct: 1700 KLAEQELIETSERVQLLHSQNTSLINQKKKMDADLSQ------LQTEVEEAVQECRNAEE 1753
Query: 357 NRKRS 361
K++
Sbjct: 1754 KAKKA 1758
Score = 33.5 bits (75), Expect = 0.34
Identities = 40/181 (22%), Positives = 68/181 (37%), Gaps = 25/181 (13%)
Query: 195 DGDCEGVIFEGEPMYLNVGEVSTPFHIFKVKVTTERERMENIDSTILSPKQIKTPFQKIL 254
+ +C + + + + L + +V H + KV E M +D I K+
Sbjct: 944 EDECSELKRDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDEIIA----------KLT 993
Query: 255 RDKDVEDEQEHYTSDDLDIE-------TKME---EQEKNPASSELEEPSLVCEEDEIMRS 304
++K E DDL E TK + EQ+ + LE+ V + E +
Sbjct: 994 KEKKALQEAHQQALDDLQAEEDKVNTLTKAKVKLEQQVDDLEGSLEQEKKVRMDLERAKR 1053
Query: 305 KESPDLSISHSQVEQLVNKTSELDMSESK-----TRSGKVFQNKMANGNQPVKSSKENRK 359
K DL ++ + L N +LD K +++ A G+Q K KE +
Sbjct: 1054 KLEGDLKLTQESIMDLENDKQQLDERLKKKDFELNALNARIEDEQALGSQLQKKLKELQA 1113
Query: 360 R 360
R
Sbjct: 1114 R 1114
>gi|156104908 myosin heavy chain 6 [Homo sapiens]
Length = 1939
Score = 40.4 bits (93), Expect = 0.003
Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
Query: 244 KQIKTPFQKILRDKDVEDEQEHYTSDDLDIETKMEEQEKNPASSELEEPSLVCEEDEIMR 303
KQ+K+ Q +L+D ++ + +DDL + E+ N +ELEE V E+ E R
Sbjct: 1643 KQVKS-LQSLLKDTQIQLDDAVRANDDLKENIAIVERRNNLLQAELEELRAVVEQTERSR 1701
Query: 304 SKESPDLSISHSQVEQLVNKTSELDMSESKTRSGKV-FQNKMANGNQPVKSSKENRKRS 361
+L + +V+ L ++ + L + K S Q+++ Q ++++E K++
Sbjct: 1702 KLAEQELIETSERVQLLHSQNTSLINQKKKMESDLTQLQSEVEEAVQECRNAEEKAKKA 1760
Score = 35.0 bits (79), Expect = 0.12
Identities = 40/175 (22%), Positives = 71/175 (40%), Gaps = 13/175 (7%)
Query: 195 DGDCEGVIFEGEPMYLNVGEVSTPFHIFKVKVTTERERMENIDSTILS----PKQIKTPF 250
+ +C + + + + L + +V H + KV E M +D I K ++
Sbjct: 946 EDECSELKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDEIIAKLTKEKKALQEAH 1005
Query: 251 QKILRDKDVEDEQEHYTSDDLDIETKMEEQEKNPASSELEEPSLVCEEDEIMRSKESPDL 310
Q+ L D VE+++ + S + K+E+Q + S LE+ V + E + K DL
Sbjct: 1006 QQALDDLQVEEDKVNSLSKS---KVKLEQQVDDLEGS-LEQEKKVRMDLERAKRKLEGDL 1061
Query: 311 SISHSQVEQLVNKTSELDMSESKTRSGKVFQNKMANGNQPV-----KSSKENRKR 360
++ + L N +L+ K QN Q + K KEN+ R
Sbjct: 1062 KLTQESIMDLENDKLQLEEKLKKKEFDINQQNSKIEDEQVLALQLQKKLKENQAR 1116
>gi|157738649 neurofilament, medium polypeptide 150kDa isoform 1
[Homo sapiens]
Length = 916
Score = 40.0 bits (92), Expect = 0.004
Identities = 45/204 (22%), Positives = 82/204 (40%), Gaps = 30/204 (14%)
Query: 202 IFEGEPMYLNV--GEVSTPFHIFKVKVTTERERMENIDSTILSPKQIKTP--------FQ 251
+ EGE + G ++ P + + +T I S I PK ++ P +
Sbjct: 404 LLEGEETRFSTFAGSITGPLYTHRPPIT--------ISSKIQKPK-VEAPKLKVQHKFVE 454
Query: 252 KILRDKDVEDE----QEHYTSDDLDIETKMEEQEKNPASSELEEPSLVCEEDEIMRSKES 307
+I+ + VEDE +E T+ ++ M+E++K A + EEP E+E + +K+S
Sbjct: 455 EIIEETKVEDEKSEMEEALTAITEELAVSMKEEKKEAAEEKEEEPE---AEEEEVAAKKS 511
Query: 308 PDLSISHSQVEQLVNKTSELDMSESKTRSGKVFQNKMANGNQPVKSSKENRKRSQHESGR 367
P + + E+ K E E + ++ G + S E + Q E
Sbjct: 512 PVKATAPEVKEEEGEKEEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSSEKEEGEQEEGET 571
Query: 368 IVLHHFDSSSQESVPKRRKFSEPK 391
++ +E+ K K E K
Sbjct: 572 ----EAEAEGEEAEAKEEKKVEEK 591
>gi|157738641 neurofilament, medium polypeptide 150kDa isoform 2
[Homo sapiens]
Length = 540
Score = 40.0 bits (92), Expect = 0.004
Identities = 45/204 (22%), Positives = 82/204 (40%), Gaps = 30/204 (14%)
Query: 202 IFEGEPMYLNV--GEVSTPFHIFKVKVTTERERMENIDSTILSPKQIKTP--------FQ 251
+ EGE + G ++ P + + +T I S I PK ++ P +
Sbjct: 28 LLEGEETRFSTFAGSITGPLYTHRPPIT--------ISSKIQKPK-VEAPKLKVQHKFVE 78
Query: 252 KILRDKDVEDE----QEHYTSDDLDIETKMEEQEKNPASSELEEPSLVCEEDEIMRSKES 307
+I+ + VEDE +E T+ ++ M+E++K A + EEP E+E + +K+S
Sbjct: 79 EIIEETKVEDEKSEMEEALTAITEELAVSMKEEKKEAAEEKEEEPE---AEEEEVAAKKS 135
Query: 308 PDLSISHSQVEQLVNKTSELDMSESKTRSGKVFQNKMANGNQPVKSSKENRKRSQHESGR 367
P + + E+ K E E + ++ G + S E + Q E
Sbjct: 136 PVKATAPEVKEEEGEKEEEEGQEEEEEEDEGAKSDQAEEGGSEKEGSSEKEEGEQEEGET 195
Query: 368 IVLHHFDSSSQESVPKRRKFSEPK 391
++ +E+ K K E K
Sbjct: 196 ----EAEAEGEEAEAKEEKKVEEK 215
>gi|44680105 caldesmon 1 isoform 1 [Homo sapiens]
Length = 793
Score = 38.5 bits (88), Expect = 0.011
Identities = 34/147 (23%), Positives = 70/147 (47%), Gaps = 9/147 (6%)
Query: 223 KVKVTTERERMENIDSTILSPKQIKTPFQKILRDKDVEDEQEHYTSDDLDIETKMEEQEK 282
+V+V E + E+ + T++ + +I ++ ++E+ SD++ KMEE++K
Sbjct: 207 QVEVMVEEKTTESQEETVV----MSLKNGQISSEEPKQEEEREQGSDEISHHEKMEEEDK 262
Query: 283 NPASSELEEPSLVCEEDEIMRSKESPDLSISHSQVE-QLVNKTSELDMSESKTRSGKVFQ 341
A E E L EE E +++++ ++ +++E + E + E++ R +
Sbjct: 263 ERA--EAERARLEAEERERIKAEQDKKIADERARIEAEEKAAAQERERREAEERERMREE 320
Query: 342 NKMANGNQPVKSSKENRKRSQHESGRI 368
K A + + KE KR+ E RI
Sbjct: 321 EKRAAEER--QRIKEEEKRAAEERQRI 345
>gi|151101151 coiled-coil domain containing 2 isoform b [Homo
sapiens]
Length = 372
Score = 38.5 bits (88), Expect = 0.011
Identities = 43/187 (22%), Positives = 82/187 (43%), Gaps = 27/187 (14%)
Query: 214 EVSTPFHIFKVKVTTERERMENIDSTILSPKQIKTPFQKILRDKDVEDEQEHYTSDD--- 270
EV +++ K + E + ++ I + +Q K +K +R + E EQE +DD
Sbjct: 168 EVMNDYNMLKAQNDRETQSLD----VIFTERQAK---EKQIRSVEEEIEQEKQATDDIIK 220
Query: 271 -LDIETKMEEQEKNPASSEL--EEPSLVCEEDEIMRSKESPDLSISHSQVEQLVNKTSEL 327
+ E +++ E + +L E +L + D KES + I+HSQV+Q E
Sbjct: 221 NMSFENQVKYLEMKTTNEKLLQELDTLQQQLDSQNMKKESLEAEIAHSQVKQ------EA 274
Query: 328 DMSESKTRSGKVFQNKMANGNQPVKSSKENRKRSQHESGRIVLHHFDSSSQESVPKRRKF 387
+ K + +++M ++ + S E R++ +L +QE R+
Sbjct: 275 VLLHEKLYELESHRDQMIAEDKSIGSPMEEREK--------LLKQIKDDNQEIASMERQL 326
Query: 388 SEPKEHI 394
++ KE I
Sbjct: 327 TDTKEKI 333
>gi|151101140 coiled-coil domain containing 2 isoform a [Homo
sapiens]
Length = 600
Score = 38.5 bits (88), Expect = 0.011
Identities = 43/187 (22%), Positives = 82/187 (43%), Gaps = 27/187 (14%)
Query: 214 EVSTPFHIFKVKVTTERERMENIDSTILSPKQIKTPFQKILRDKDVEDEQEHYTSDD--- 270
EV +++ K + E + ++ I + +Q K +K +R + E EQE +DD
Sbjct: 168 EVMNDYNMLKAQNDRETQSLD----VIFTERQAK---EKQIRSVEEEIEQEKQATDDIIK 220
Query: 271 -LDIETKMEEQEKNPASSEL--EEPSLVCEEDEIMRSKESPDLSISHSQVEQLVNKTSEL 327
+ E +++ E + +L E +L + D KES + I+HSQV+Q E
Sbjct: 221 NMSFENQVKYLEMKTTNEKLLQELDTLQQQLDSQNMKKESLEAEIAHSQVKQ------EA 274
Query: 328 DMSESKTRSGKVFQNKMANGNQPVKSSKENRKRSQHESGRIVLHHFDSSSQESVPKRRKF 387
+ K + +++M ++ + S E R++ +L +QE R+
Sbjct: 275 VLLHEKLYELESHRDQMIAEDKSIGSPMEEREK--------LLKQIKDDNQEIASMERQL 326
Query: 388 SEPKEHI 394
++ KE I
Sbjct: 327 TDTKEKI 333
>gi|151105223 coiled-coil domain containing 2 isoform a [Homo
sapiens]
Length = 600
Score = 38.5 bits (88), Expect = 0.011
Identities = 43/187 (22%), Positives = 82/187 (43%), Gaps = 27/187 (14%)
Query: 214 EVSTPFHIFKVKVTTERERMENIDSTILSPKQIKTPFQKILRDKDVEDEQEHYTSDD--- 270
EV +++ K + E + ++ I + +Q K +K +R + E EQE +DD
Sbjct: 168 EVMNDYNMLKAQNDRETQSLD----VIFTERQAK---EKQIRSVEEEIEQEKQATDDIIK 220
Query: 271 -LDIETKMEEQEKNPASSEL--EEPSLVCEEDEIMRSKESPDLSISHSQVEQLVNKTSEL 327
+ E +++ E + +L E +L + D KES + I+HSQV+Q E
Sbjct: 221 NMSFENQVKYLEMKTTNEKLLQELDTLQQQLDSQNMKKESLEAEIAHSQVKQ------EA 274
Query: 328 DMSESKTRSGKVFQNKMANGNQPVKSSKENRKRSQHESGRIVLHHFDSSSQESVPKRRKF 387
+ K + +++M ++ + S E R++ +L +QE R+
Sbjct: 275 VLLHEKLYELESHRDQMIAEDKSIGSPMEEREK--------LLKQIKDDNQEIASMERQL 326
Query: 388 SEPKEHI 394
++ KE I
Sbjct: 327 TDTKEKI 333
>gi|151105229 coiled-coil domain containing 2 isoform a [Homo
sapiens]
Length = 600
Score = 38.5 bits (88), Expect = 0.011
Identities = 43/187 (22%), Positives = 82/187 (43%), Gaps = 27/187 (14%)
Query: 214 EVSTPFHIFKVKVTTERERMENIDSTILSPKQIKTPFQKILRDKDVEDEQEHYTSDD--- 270
EV +++ K + E + ++ I + +Q K +K +R + E EQE +DD
Sbjct: 168 EVMNDYNMLKAQNDRETQSLD----VIFTERQAK---EKQIRSVEEEIEQEKQATDDIIK 220
Query: 271 -LDIETKMEEQEKNPASSEL--EEPSLVCEEDEIMRSKESPDLSISHSQVEQLVNKTSEL 327
+ E +++ E + +L E +L + D KES + I+HSQV+Q E
Sbjct: 221 NMSFENQVKYLEMKTTNEKLLQELDTLQQQLDSQNMKKESLEAEIAHSQVKQ------EA 274
Query: 328 DMSESKTRSGKVFQNKMANGNQPVKSSKENRKRSQHESGRIVLHHFDSSSQESVPKRRKF 387
+ K + +++M ++ + S E R++ +L +QE R+
Sbjct: 275 VLLHEKLYELESHRDQMIAEDKSIGSPMEEREK--------LLKQIKDDNQEIASMERQL 326
Query: 388 SEPKEHI 394
++ KE I
Sbjct: 327 TDTKEKI 333
>gi|94681063 bromodomain adjacent to zinc finger domain, 2B [Homo
sapiens]
Length = 2168
Score = 38.5 bits (88), Expect = 0.011
Identities = 43/186 (23%), Positives = 74/186 (39%), Gaps = 16/186 (8%)
Query: 211 NVGEVSTPFHIFKVKVTTERERMENIDSTILSPKQIKTPFQKILRDKDVEDEQEHYTSDD 270
NV V T H K E+ R DS I S K + + D + EDE++ DD
Sbjct: 571 NVNPVKTQHHSHPAKSLVEQFR--GTDSDIPSSKDSEDSNEDEEEDDEEEDEED--DEDD 626
Query: 271 LDIETKMEEQEKNPASSELEEPSLVCEEDEIMRSKESPDLSISHSQVEQLVNKTSELDMS 330
+++ E + + +E E EED+ + ++ D + +NKT+ S
Sbjct: 627 ESDDSQSESDSNSESDTEGSE-----EEDDDDKDQDESDSDTEGEKTSMKLNKTTSSVKS 681
Query: 331 ESKTRSGKVFQNKM----ANGNQPVKSSKENRKRSQHESGRIVLHHFDSSSQESVPKRRK 386
S + +G + A G+ P E++ + + L SS KRR+
Sbjct: 682 PSMSLTGHSTPRNLHIAKAPGSAPAALCSESQSPAFLGTSSSTL---TSSPHSGTSKRRR 738
Query: 387 FSEPKE 392
++ +E
Sbjct: 739 VTDERE 744
>gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens]
Length = 727
Score = 38.5 bits (88), Expect = 0.011
Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 13/141 (9%)
Query: 251 QKILRDKDVEDEQEHYTSDDLDIETKMEEQEKNPASSELEEPSLVCEEDEIMRSKESPDL 310
+ + D++VE++ E +++D + + EE+E+ E EE E+DE + +E D
Sbjct: 207 EDVEEDEEVEEDAEE--DEEVDEDGEEEEEEEEEEEEEEEEEEEEYEQDERDQKEEGNDY 264
Query: 311 SISHSQVEQLVNKTSELDMSESKTRSG--------KVFQNKMANGNQPVKSSKENRKRSQ 362
++ E + + + ++ RSG K + K A G P+ + S+
Sbjct: 265 D---TRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKERKRARGISPIVFDRSGSSASE 321
Query: 363 HESGRIVLHHFDSSSQESVPK 383
+G H SSS +V K
Sbjct: 322 SYAGSEKKHEKLSSSVRAVRK 342
>gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]
Length = 330
Score = 38.1 bits (87), Expect = 0.014
Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 7/137 (5%)
Query: 252 KILRDKDVEDEQEHYTSDDLDIETKMEEQEKNPASSELEEPSLVCEEDEIMRSKESPDLS 311
K + DK+ E E+E +D D+ +++++ ++L + +L E+E K+S S
Sbjct: 146 KEVEDKESEGEEE---DEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRS 202
Query: 312 ISHSQVEQLVNKTSELDMSESKTRSGKVFQNKMANGNQPVKSSKENRKRSQHESGRIVLH 371
S S+ + + S S++RS ++ ++ ++ SS+E + +S
Sbjct: 203 RSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRS 262
Query: 372 HFDSSSQESVPKRRKFS 388
H SSS P++R +S
Sbjct: 263 HRGSSS----PRKRSYS 275
>gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens]
Length = 320
Score = 38.1 bits (87), Expect = 0.014
Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 7/137 (5%)
Query: 252 KILRDKDVEDEQEHYTSDDLDIETKMEEQEKNPASSELEEPSLVCEEDEIMRSKESPDLS 311
K + DK+ E E+E +D D+ +++++ ++L + +L E+E K+S S
Sbjct: 146 KEVEDKESEGEEE---DEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRS 202
Query: 312 ISHSQVEQLVNKTSELDMSESKTRSGKVFQNKMANGNQPVKSSKENRKRSQHESGRIVLH 371
S S+ + + S S++RS ++ ++ ++ SS+E + +S
Sbjct: 203 RSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRS 262
Query: 372 HFDSSSQESVPKRRKFS 388
H SSS P++R +S
Sbjct: 263 HRGSSS----PRKRSYS 275
>gi|17975763 myelin transcription factor 1 [Homo sapiens]
Length = 1121
Score = 37.4 bits (85), Expect = 0.024
Identities = 28/109 (25%), Positives = 49/109 (44%)
Query: 224 VKVTTERERMENIDSTILSPKQIKTPFQKILRDKDVEDEQEHYTSDDLDIETKMEEQEKN 283
V+VTTER + S + + + + IL ++ ++E+E ++ + E + EE+E+
Sbjct: 225 VEVTTERSQDLCPQSLEDAASEESSKQKGILSHEEEDEEEEEEEEEEEEDEEEEEEEEEE 284
Query: 284 PASSELEEPSLVCEEDEIMRSKESPDLSISHSQVEQLVNKTSELDMSES 332
E EE EE+E + +PD+ K EL ES
Sbjct: 285 EEEEEEEEEEEEEEEEEEEEEEAAPDVIFQEDTSHTSAQKAPELRGPES 333
>gi|71061468 centromere protein E [Homo sapiens]
Length = 2701
Score = 37.4 bits (85), Expect = 0.024
Identities = 25/121 (20%), Positives = 52/121 (42%)
Query: 226 VTTERERMENIDSTILSPKQIKTPFQKILRDKDVEDEQEHYTSDDLDIETKMEEQEKNPA 285
+ + E + ++S I +Q+KT ++ + E+ D+L + ++ QEKN A
Sbjct: 1049 IQEKNELQQMLESVIAEKEQLKTDLKENIEMTIENQEELRLLGDELKKQQEIVAQEKNHA 1108
Query: 286 SSELEEPSLVCEEDEIMRSKESPDLSISHSQVEQLVNKTSELDMSESKTRSGKVFQNKMA 345
+ E S C+ + K + +QL+N E+ + K + +N++
Sbjct: 1109 IKKEGELSRTCDRLAEVEEKLKEKSQQLQEKQQQLLNVQEEMSEMQKKINEIENLKNELK 1168
Query: 346 N 346
N
Sbjct: 1169 N 1169
Score = 32.7 bits (73), Expect = 0.58
Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 15/157 (9%)
Query: 223 KVKVTTERERMENIDSTILSPKQIKTPFQKILRDKDVEDEQEHYTSDDLDIETKMEEQEK 282
K++ E+E NI KQI +K+ K ++ ++ S IE+KM E
Sbjct: 1524 KIQEIYEKEEQFNI-------KQISEVQEKVNELKQFKEHRKAKDSALQSIESKMLELTN 1576
Query: 283 NPASSELEEPSLVCEEDEIMRSKESPDLSISHSQVEQLVNKTSEL--DMSESKTRSGKVF 340
S+ E ++ E++E+ R +E+ + + +QL T E+ M ES+ + +
Sbjct: 1577 RLQESQEEIQIMIKEKEEMKRVQEALQI-----ERDQLKENTKEIVAKMKESQEKEYQFL 1631
Query: 341 QNKMANGNQPVKSSKENRKRSQHESGRIVLHHFDSSS 377
+ N Q E+ K Q E+ ++ L + ++ +
Sbjct: 1632 KMTAVNETQEKMCEIEHLK-EQFETQKLNLENIETEN 1667
>gi|6005757 chromatin-specific transcription elongation factor large
subunit [Homo sapiens]
Length = 1047
Score = 37.0 bits (84), Expect = 0.031
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Query: 259 VEDEQEHYTSDDLDIETKMEEQEKNPASSELEEPSLVCEEDEIMRSKESPDLSISHSQVE 318
+E E E +++ D E+++E++ NP+ + EE +ED ++ES S E
Sbjct: 925 LEPEGEGSDAEEGDSESEIEDETFNPSEDDYEEEEEDSDEDYSSEAEESDYSKESLGSEE 984
Query: 319 QLVNKTSELDMSESKTRSGKVFQNKMANGNQPVKSSKENRKRSQHESGR 367
+ EL+ K +++ + +S RK S H SGR
Sbjct: 985 ESGKDWDELEEEARKADR----ESRYEEEEEQSRSMSRKRKASVHSSGR 1029
>gi|153792284 pote protein [Homo sapiens]
Length = 584
Score = 37.0 bits (84), Expect = 0.031
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 260 EDEQEHYTSDDLDIETKMEEQEKNPASSELEEPSLVCEEDEIMRSKESPDLSISHSQVEQ 319
+ E E Y SD+ + K +E+N S+ E + ++ E+ K + +LS+SH + E
Sbjct: 462 DTENEEYHSDEQNDTRKQLSEEQNTGISQDEILTNKQKQIEVAEQKMNSELSLSHKKEED 521
Query: 320 LVNKTS---------ELDMSESKTRSGKVFQNKMANGNQPVKSSKENRKRS 361
L+ + S L++ E+K ++ +NK+ + VK + R+
Sbjct: 522 LLRENSVLQEEIAMLRLELDETK-HQNQLRENKILEEIESVKEKTDKLLRA 571
>gi|239747116 PREDICTED: hypothetical protein XP_002343915 isoform 2
[Homo sapiens]
Length = 551
Score = 37.0 bits (84), Expect = 0.031
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 260 EDEQEHYTSDDLDIETKMEEQEKNPASSELEEPSLVCEEDEIMRSKESPDLSISHSQVEQ 319
+ E E Y SD+ + K +E+N S+ E + ++ E+ K + +LS+SH + E
Sbjct: 429 DTENEEYHSDEQNDTRKQLSEEQNTGISQDEILTNKQKQIEVAEQKMNSELSLSHKKEED 488
Query: 320 LVNKTS---------ELDMSESKTRSGKVFQNKMANGNQPVKSSKENRKRS 361
L+ + S L++ E+K ++ +NK+ + VK + R+
Sbjct: 489 LLRENSVLQEEIAVLRLELDETK-HQNQLRENKILEEIESVKEKTDKLLRA 538
>gi|239747114 PREDICTED: hypothetical protein XP_002343914 isoform 1
[Homo sapiens]
Length = 584
Score = 37.0 bits (84), Expect = 0.031
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 260 EDEQEHYTSDDLDIETKMEEQEKNPASSELEEPSLVCEEDEIMRSKESPDLSISHSQVEQ 319
+ E E Y SD+ + K +E+N S+ E + ++ E+ K + +LS+SH + E
Sbjct: 462 DTENEEYHSDEQNDTRKQLSEEQNTGISQDEILTNKQKQIEVAEQKMNSELSLSHKKEED 521
Query: 320 LVNKTS---------ELDMSESKTRSGKVFQNKMANGNQPVKSSKENRKRS 361
L+ + S L++ E+K ++ +NK+ + VK + R+
Sbjct: 522 LLRENSVLQEEIAVLRLELDETK-HQNQLRENKILEEIESVKEKTDKLLRA 571
>gi|110611903 myosin, heavy polypeptide 4, skeletal muscle [Homo
sapiens]
Length = 1939
Score = 37.0 bits (84), Expect = 0.031
Identities = 42/183 (22%), Positives = 72/183 (39%), Gaps = 29/183 (15%)
Query: 195 DGDCEGVIFEGEPMYLNVGEVSTPFHIFKVKVTTERERMENIDSTILSPKQIKTPFQKIL 254
+ +C + + + + L + +V H + KV E M +D TI K+
Sbjct: 948 EDECSELKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDETIA----------KLT 997
Query: 255 RDKDVEDEQEHYTSDDLDIE-----------TKMEEQEKNPASSELEEPSLVCEEDEIMR 303
++K E T DDL +E TK+E+Q + S LE+ +C + E +
Sbjct: 998 KEKKALQEAHQQTLDDLQMEEDKVNTLTKAKTKLEQQVDDLEGS-LEQEKKLCMDLERAK 1056
Query: 304 SKESPDLSISHSQVEQLVNKTSELDMS------ESKTRSGKVFQNKMANGNQPVKSSKEN 357
K DL ++ N +L+ E GK+ +++ A Q K KE
Sbjct: 1057 RKLEGDLKLAQESTMDTENDKQQLNEKLKKKEFEMSNLQGKI-EDEQALAIQLQKKIKEL 1115
Query: 358 RKR 360
+ R
Sbjct: 1116 QAR 1118
Score = 31.6 bits (70), Expect = 1.3
Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 1/112 (0%)
Query: 251 QKILRDKDVEDEQEHYTSDDLDIETKMEEQEKNPASSELEEPSLVCEEDEIMRSKESPDL 310
Q IL+D + + DDL + M E+ N +E+EE E E R +L
Sbjct: 1651 QGILKDTQLHLDDAIRGQDDLKEQLAMVERRANLMQAEVEELRASLERTERGRKMAEQEL 1710
Query: 311 SISHSQVEQLVNKTSELDMSESKTRSG-KVFQNKMANGNQPVKSSKENRKRS 361
+ +V+ L + + L ++ K + Q +M + Q ++++E K++
Sbjct: 1711 LDASERVQLLHTQNTSLINTKKKLETDISQIQGEMEDIVQEARNAEEKAKKA 1762
>gi|24415404 MDN1, midasin homolog [Homo sapiens]
Length = 5596
Score = 37.0 bits (84), Expect = 0.031
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Query: 199 EGVIFEGEPMYLNVGEVSTPFHIFKVKVTTERERMENIDSTILSPKQIKTPFQK-ILRDK 257
+G E M + GE +T FH ++ E E M+++ I + +Q++ FQK +DK
Sbjct: 4652 KGFCLPKEFMEDSAGEGATEFHDYEGGGIGEGEGMKDVSDQIGNEEQVEDTFQKGQEKDK 4711
Query: 258 DVEDEQEHYTSDDLDIETKMEEQEKNPASSELEEPSLVCEEDEIMRSKESPDL 310
+ D + +D IE E+ + ELEE EED+ E DL
Sbjct: 4712 EDPDSKSDIKGEDNAIEMS-EDFDGKMHDGELEEQ----EEDDEKSDSEGGDL 4759
Score = 28.9 bits (63), Expect = 8.4
Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 6/125 (4%)
Query: 243 PKQIKTPFQKILRDKDVEDEQEHYTSDDLDIETKMEEQEKNPASSELEEPSLVCEEDEIM 302
P++ Q+ + +KD E ++E + D + +E+E+ S E+ E E
Sbjct: 4972 PEEHSEEQQQSVEEKDKEADEEGGENGPADQGFQPQEEEEREDSDTEEQVPEALERKEHA 5031
Query: 303 RSKESPDLSISHSQVEQLVNKTSELDMSESKTRSGKVFQNKMANGNQ-----PVKSSKEN 357
++ ++ ++Q +L E + + + SG N+ A G++ + S K
Sbjct: 5032 SCGQTGVENMQNTQAMELAGAAPEKEQGKEEHGSGAADANQ-AEGHESNFIAQLASQKHT 5090
Query: 358 RKRSQ 362
RK +Q
Sbjct: 5091 RKNTQ 5095
>gi|21735569 claspin [Homo sapiens]
Length = 1339
Score = 36.6 bits (83), Expect = 0.040
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 256 DKDVEDEQEHYTSDDLDIETKMEEQEKNPASSELEEPSLVCEEDEIMRSKESPDLSISHS 315
+++ E+E+E + D E K+E++EK ELEE EE+E ++E+ + +S
Sbjct: 629 EEEEEEEEEMTDESEEDGEEKVEKEEKE---EELEEEEEKEEEEEEEGNQETAEFLLSSE 685
Query: 316 QVEQLVNKTSELDMSESKTRSGK 338
++E K + + ++ + GK
Sbjct: 686 EIETKDEKEMDKENNDGSSEIGK 708
>gi|55953110 retinoblastoma protein-binding zinc finger protein
isoform c [Homo sapiens]
Length = 1481
Score = 36.6 bits (83), Expect = 0.040
Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 256 DKDVEDEQEHYTSDDLDIETKMEEQEKNPASSELEEPSLVCEE--DEIMRSKESPDLSIS 313
+++ EDE+E DD ++E + EE+ P + ++EP + C+E ++++ + + S
Sbjct: 71 EEEEEDEEEEEDDDDDELEDEGEEEASMPNENSVKEPEIRCDEKPEDLLEEPK----TTS 126
Query: 314 HSQVEQLVNKTSELDMSESKTR-SGKVFQNKM 344
+E T + + +K +G VF+ M
Sbjct: 127 EETLEDCSEVTPAMQIPRTKEEANGDVFETFM 158
>gi|20336260 retinoblastoma protein-binding zinc finger protein
isoform b [Homo sapiens]
Length = 1682
Score = 36.6 bits (83), Expect = 0.040
Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 256 DKDVEDEQEHYTSDDLDIETKMEEQEKNPASSELEEPSLVCEE--DEIMRSKESPDLSIS 313
+++ EDE+E DD ++E + EE+ P + ++EP + C+E ++++ + + S
Sbjct: 272 EEEEEDEEEEEDDDDDELEDEGEEEASMPNENSVKEPEIRCDEKPEDLLEEPK----TTS 327
Query: 314 HSQVEQLVNKTSELDMSESKTR-SGKVFQNKM 344
+E T + + +K +G VF+ M
Sbjct: 328 EETLEDCSEVTPAMQIPRTKEEANGDVFETFM 359
>gi|20336258 retinoblastoma protein-binding zinc finger protein
isoform a [Homo sapiens]
Length = 1718
Score = 36.6 bits (83), Expect = 0.040
Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 256 DKDVEDEQEHYTSDDLDIETKMEEQEKNPASSELEEPSLVCEE--DEIMRSKESPDLSIS 313
+++ EDE+E DD ++E + EE+ P + ++EP + C+E ++++ + + S
Sbjct: 272 EEEEEDEEEEEDDDDDELEDEGEEEASMPNENSVKEPEIRCDEKPEDLLEEPK----TTS 327
Query: 314 HSQVEQLVNKTSELDMSESKTR-SGKVFQNKM 344
+E T + + +K +G VF+ M
Sbjct: 328 EETLEDCSEVTPAMQIPRTKEEANGDVFETFM 359
>gi|145279222 WD repeat domain 66 [Homo sapiens]
Length = 1149
Score = 36.6 bits (83), Expect = 0.040
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 258 DVEDEQEHYTSDDLDIETKMEEQEKNPASSELEEPSLVCEEDEI-MRSKESPDLSISHSQ 316
D + T ++ + E K EE+E NP E+E+P ++D I R + + +
Sbjct: 3 DAAEAPREATGENGETEMK-EEEEPNPNYKEVEDPQQESKDDTIAWRESQEEERKTGEEE 61
Query: 317 VEQLVNKTSELDMSESKTRSGKVFQNKMANGNQ 349
E+ + ++ M E++ ++G+V Q K A+G Q
Sbjct: 62 GEEEGKEDKKIVMEETEEKAGEV-QEKEASGIQ 93
>gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo
sapiens]
Length = 1941
Score = 36.2 bits (82), Expect = 0.053
Identities = 40/181 (22%), Positives = 71/181 (39%), Gaps = 25/181 (13%)
Query: 195 DGDCEGVIFEGEPMYLNVGEVSTPFHIFKVKVTTERERMENIDSTILSPKQIKTPFQKIL 254
+ +C + + + + L + +V H + KV E M +D TI K+
Sbjct: 950 EDECSELKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDETIA----------KLT 999
Query: 255 RDKDVEDEQEHYTSDDLDIE-------TKME---EQEKNPASSELEEPSLVCEEDEIMRS 304
++K E T DDL E TK + EQ+ + LE+ + + E +
Sbjct: 1000 KEKKALQEAHQQTLDDLQAEEDKVNTLTKAKIKLEQQVDDLEGSLEQEKKLRMDLERAKR 1059
Query: 305 KESPDLSISHSQVEQLVNKTSELDMSESK-----TRSGKVFQNKMANGNQPVKSSKENRK 359
K DL ++ + + N+ +LD K + +++ A G Q K KE +
Sbjct: 1060 KLEGDLKLAQESIMDIENEKQQLDEKLKKKEFEISNLQSKIEDEQALGIQLQKKIKELQA 1119
Query: 360 R 360
R
Sbjct: 1120 R 1120
Score = 33.9 bits (76), Expect = 0.26
Identities = 25/112 (22%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Query: 251 QKILRDKDVEDEQEHYTSDDLDIETKMEEQEKNPASSELEEPSLVCEEDEIMRSKESPDL 310
Q IL+D + + + +DL + M E+ N +E+EE E+ E R +L
Sbjct: 1653 QGILKDTQIHLDDALRSQEDLKEQLAMVERRANLLQAEIEELRATLEQTERSRKIAEQEL 1712
Query: 311 SISHSQVEQLVNKTSELDMSESKTRSG-KVFQNKMANGNQPVKSSKENRKRS 361
+ +V+ L + + L ++ K + Q +M + Q ++++E K++
Sbjct: 1713 LDASERVQLLHTQNTSLINTKKKLETDISQMQGEMEDILQEARNAEEKAKKA 1764
>gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo
sapiens]
Length = 1941
Score = 36.2 bits (82), Expect = 0.053
Identities = 40/181 (22%), Positives = 71/181 (39%), Gaps = 25/181 (13%)
Query: 195 DGDCEGVIFEGEPMYLNVGEVSTPFHIFKVKVTTERERMENIDSTILSPKQIKTPFQKIL 254
+ +C + + + + L + +V H + KV E M +D TI K+
Sbjct: 950 EDECSELKKDIDDLELTLAKVEKEKHATENKVKNLTEEMAGLDETIA----------KLT 999
Query: 255 RDKDVEDEQEHYTSDDLDIE-------TKME---EQEKNPASSELEEPSLVCEEDEIMRS 304
++K E T DDL E TK + EQ+ + LE+ + + E +
Sbjct: 1000 KEKKALQEAHQQTLDDLQAEEDKVNTLTKAKIKLEQQVDDLEGSLEQEKKLRMDLERAKR 1059
Query: 305 KESPDLSISHSQVEQLVNKTSELDMSESK-----TRSGKVFQNKMANGNQPVKSSKENRK 359
K DL ++ + + N+ +LD K + +++ A G Q K KE +
Sbjct: 1060 KLEGDLKLAQESIMDIENEKQQLDEKLKKKEFEISNLQSKIEDEQALGIQLQKKIKELQA 1119
Query: 360 R 360
R
Sbjct: 1120 R 1120
Score = 33.9 bits (76), Expect = 0.26
Identities = 25/112 (22%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Query: 251 QKILRDKDVEDEQEHYTSDDLDIETKMEEQEKNPASSELEEPSLVCEEDEIMRSKESPDL 310
Q IL+D + + + +DL + M E+ N +E+EE E+ E R +L
Sbjct: 1653 QGILKDTQIHLDDALRSQEDLKEQLAMVERRANLLQAEIEELRATLEQTERSRKIAEQEL 1712
Query: 311 SISHSQVEQLVNKTSELDMSESKTRSG-KVFQNKMANGNQPVKSSKENRKRS 361
+ +V+ L + + L ++ K + Q +M + Q ++++E K++
Sbjct: 1713 LDASERVQLLHTQNTSLINTKKKLETDISQMQGEMEDILQEARNAEEKAKKA 1764
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.131 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,613,993
Number of Sequences: 37866
Number of extensions: 732650
Number of successful extensions: 3322
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 201
Number of HSP's that attempted gapping in prelim test: 2762
Number of HSP's gapped (non-prelim): 609
length of query: 394
length of database: 18,247,518
effective HSP length: 104
effective length of query: 290
effective length of database: 14,309,454
effective search space: 4149741660
effective search space used: 4149741660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.