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Search of human proteins with 30520348
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|30520348 phospholipase D6 [Homo sapiens]
(252 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|30520348 phospholipase D6 [Homo sapiens] 516 e-147
gi|23510413 sorting nexin 26 [Homo sapiens] 39 0.006
gi|94681038 phospholipase D4 [Homo sapiens] 36 0.028
gi|166197683 phospholipase D3 [Homo sapiens] 33 0.18
gi|72534684 phospholipase D3 [Homo sapiens] 33 0.18
gi|11321571 slit homolog 3 [Homo sapiens] 32 0.40
gi|46255017 hypothetical protein LOC84985 isoform b [Homo sapiens] 32 0.69
gi|40254997 hypothetical protein LOC84985 isoform a [Homo sapiens] 32 0.69
gi|157311635 FAM83H [Homo sapiens] 31 1.2
gi|45504380 jumonji domain containing 2B [Homo sapiens] 30 1.5
gi|116235448 hypothetical protein LOC81610 [Homo sapiens] 30 1.5
gi|4759066 sodium channel, voltage-gated, type II, beta [Homo sa... 30 2.0
gi|38788416 laminin, alpha 1 precursor [Homo sapiens] 30 2.6
gi|121114304 fms-related tyrosine kinase 3 [Homo sapiens] 30 2.6
gi|38455416 fms-related tyrosine kinase 3 ligand [Homo sapiens] 29 3.4
gi|70610136 poly (ADP-ribose) glycohydrolase [Homo sapiens] 29 3.4
gi|224994189 prominin 1 isoform 2 [Homo sapiens] 28 9.9
gi|224994199 prominin 1 isoform 4 [Homo sapiens] 28 9.9
gi|224994197 prominin 1 isoform 5 [Homo sapiens] 28 9.9
gi|224994195 prominin 1 isoform 6 [Homo sapiens] 28 9.9
gi|224994193 prominin 1 isoform 7 [Homo sapiens] 28 9.9
gi|224994191 prominin 1 isoform 2 [Homo sapiens] 28 9.9
gi|5174387 prominin 1 isoform 1 [Homo sapiens] 28 9.9
gi|19718764 ubiquitin protein ligase E3A isoform 3 [Homo sapiens] 28 9.9
gi|19718762 ubiquitin protein ligase E3A isoform 1 [Homo sapiens] 28 9.9
gi|19718766 ubiquitin protein ligase E3A isoform 2 [Homo sapiens] 28 9.9
gi|41151527 PREDICTED: hypothetical protein [Homo sapiens] 28 9.9
>gi|30520348 phospholipase D6 [Homo sapiens]
Length = 252
Score = 516 bits (1330), Expect = e-147
Identities = 252/252 (100%), Positives = 252/252 (100%)
Query: 1 MGRLSWQVAAAAAVGLALTLEALPWVLRWLRSRRRRPRREAPFFPSQVTCTEALLRAPGA 60
MGRLSWQVAAAAAVGLALTLEALPWVLRWLRSRRRRPRREAPFFPSQVTCTEALLRAPGA
Sbjct: 1 MGRLSWQVAAAAAVGLALTLEALPWVLRWLRSRRRRPRREAPFFPSQVTCTEALLRAPGA 60
Query: 61 ELAELPEGCPCGLPHGESALSRLLRALLAARASLDLCLFAFSSPQLGHAVQLLHQRGVRV 120
ELAELPEGCPCGLPHGESALSRLLRALLAARASLDLCLFAFSSPQLGHAVQLLHQRGVRV
Sbjct: 61 ELAELPEGCPCGLPHGESALSRLLRALLAARASLDLCLFAFSSPQLGHAVQLLHQRGVRV 120
Query: 121 RVVTDCDYMALNGSQIGLLRKAGIQVRHDQDPGYMHHKFAIVDKRVLITGSLNWTTQAIQ 180
RVVTDCDYMALNGSQIGLLRKAGIQVRHDQDPGYMHHKFAIVDKRVLITGSLNWTTQAIQ
Sbjct: 121 RVVTDCDYMALNGSQIGLLRKAGIQVRHDQDPGYMHHKFAIVDKRVLITGSLNWTTQAIQ 180
Query: 181 NNRENVLITEDDEYVRLFLEEFERIWEQFNPTKYTFFPPKKSHGSCAPPVSRAGGRLLSW 240
NNRENVLITEDDEYVRLFLEEFERIWEQFNPTKYTFFPPKKSHGSCAPPVSRAGGRLLSW
Sbjct: 181 NNRENVLITEDDEYVRLFLEEFERIWEQFNPTKYTFFPPKKSHGSCAPPVSRAGGRLLSW 240
Query: 241 HRTCGTSSESQT 252
HRTCGTSSESQT
Sbjct: 241 HRTCGTSSESQT 252
>gi|23510413 sorting nexin 26 [Homo sapiens]
Length = 1126
Score = 38.5 bits (88), Expect = 0.006
Identities = 32/99 (32%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
Query: 29 WLRSRRRRPRREAPFFPSQVTCTEALLRAPGAELAELPEGCPCGLPHGESALSRLLRALL 88
W R +R + FFPS+ C E PG L +G PCG+P +S L A+
Sbjct: 226 WWRGKRGF---QVGFFPSE--CVELFTERPGPGLKADADGPPCGIP-APQGISSLTSAVP 279
Query: 89 AARASLDLCLFAFSSPQLGHAVQLLHQRGVRVRVVTDCD 127
R L L F + Q L QRG+ + V CD
Sbjct: 280 RPRGKLAGLLRTFMRSRPSR--QRLRQRGILRQRVFGCD 316
>gi|94681038 phospholipase D4 [Homo sapiens]
Length = 506
Score = 36.2 bits (82), Expect = 0.028
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 13/116 (11%)
Query: 102 SSPQLGHAV----QLLHQRGVRVRVVTDCDYMALNGSQIGLLRKAGIQVRHDQDP----- 152
SS QLG A+ Q L R + + V T +A + + +L G VR Q P
Sbjct: 152 SSSQLGEALLQKLQQLLGRNISLAVATSSPTLARTSTDLQVLAARGAHVR--QVPMGRLT 209
Query: 153 -GYMHHKFAIVDKRVLITGSLNWTTQAIQNNRENVLITEDDEYVRLFLEE-FERIW 206
G +H KF +VD R + GS N +++ +E + + ++ LE+ F+ W
Sbjct: 210 RGVLHSKFWVVDGRHIYMGSANMDWRSLTQVKELGAVIYNCSHLAQDLEKTFQTYW 265
>gi|166197683 phospholipase D3 [Homo sapiens]
Length = 490
Score = 33.5 bits (75), Expect = 0.18
Identities = 46/170 (27%), Positives = 68/170 (40%), Gaps = 26/170 (15%)
Query: 63 AELPEGCPCGLPH-----GESALSRLLRALLA-ARASLDLCLFAFS-----------SPQ 105
A L E P GL G + S+ LLA A +SLD+ F ++ S Q
Sbjct: 83 AVLVESIPEGLDFPNASTGNPSTSQAWLGLLAGAHSSLDIASFYWTLTNNDTHTQEPSAQ 142
Query: 106 LGHAV----QLLHQRGVRVRVVTDCDYMALNGSQIGLLRKAGIQVR----HDQDPGYMHH 157
G V Q L +GV VR+ + + L ++G QVR G +H
Sbjct: 143 QGEEVLRQLQTLAPKGVNVRIAVSKPSGPQPQADLQALLQSGAQVRMVDMQKLTHGVLHT 202
Query: 158 KFAIVDKRVLITGSLNWTTQAIQNNRE-NVLITEDDEYVRLFLEEFERIW 206
KF +VD+ GS N +++ +E V++ R + FE W
Sbjct: 203 KFWVVDQTHFYLGSANMDWRSLTQVKELGVVMYNCSCLARDLTKIFEAYW 252
>gi|72534684 phospholipase D3 [Homo sapiens]
Length = 490
Score = 33.5 bits (75), Expect = 0.18
Identities = 46/170 (27%), Positives = 68/170 (40%), Gaps = 26/170 (15%)
Query: 63 AELPEGCPCGLPH-----GESALSRLLRALLA-ARASLDLCLFAFS-----------SPQ 105
A L E P GL G + S+ LLA A +SLD+ F ++ S Q
Sbjct: 83 AVLVESIPEGLDFPNASTGNPSTSQAWLGLLAGAHSSLDIASFYWTLTNNDTHTQEPSAQ 142
Query: 106 LGHAV----QLLHQRGVRVRVVTDCDYMALNGSQIGLLRKAGIQVR----HDQDPGYMHH 157
G V Q L +GV VR+ + + L ++G QVR G +H
Sbjct: 143 QGEEVLRQLQTLAPKGVNVRIAVSKPSGPQPQADLQALLQSGAQVRMVDMQKLTHGVLHT 202
Query: 158 KFAIVDKRVLITGSLNWTTQAIQNNRE-NVLITEDDEYVRLFLEEFERIW 206
KF +VD+ GS N +++ +E V++ R + FE W
Sbjct: 203 KFWVVDQTHFYLGSANMDWRSLTQVKELGVVMYNCSCLARDLTKIFEAYW 252
>gi|11321571 slit homolog 3 [Homo sapiens]
Length = 1523
Score = 32.3 bits (72), Expect = 0.40
Identities = 23/81 (28%), Positives = 28/81 (34%), Gaps = 33/81 (40%)
Query: 23 LPWVLRWLRSRR---RRPRREAPFF------------------------------PSQVT 49
L W+ +WLR RR PR + PFF P Q T
Sbjct: 671 LAWLGKWLRKRRIVSGNPRCQKPFFLKEIPIQDVAIQDFTCDGNEESSCQLSPRCPEQCT 730
Query: 50 CTEALLRAPGAELAELPEGCP 70
C E ++R L LP G P
Sbjct: 731 CMETVVRCSNKGLRALPRGMP 751
>gi|46255017 hypothetical protein LOC84985 isoform b [Homo sapiens]
Length = 367
Score = 31.6 bits (70), Expect = 0.69
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 153 GYMHHKFAIVDKRVLITGSLNWTTQAIQNNRENVLITEDDEYVRLFLEEFERIWEQFNPT 212
G + KF I D R +++GS ++T +R N+L + V LF EEF ++ P
Sbjct: 238 GQIREKFIISDWRFVLSGSYSFTWLCGHVHR-NILSKFTGQAVELFDEEFRHLYASSKPV 296
Query: 213 KYTFFPPKKSHGSCAPPVSRAGGRLLS 239
P + P + A GRL S
Sbjct: 297 MGLKSP--RLVAPVPPGAAPANGRLSS 321
>gi|40254997 hypothetical protein LOC84985 isoform a [Homo sapiens]
Length = 434
Score = 31.6 bits (70), Expect = 0.69
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 153 GYMHHKFAIVDKRVLITGSLNWTTQAIQNNRENVLITEDDEYVRLFLEEFERIWEQFNPT 212
G + KF I D R +++GS ++T +R N+L + V LF EEF ++ P
Sbjct: 238 GQIREKFIISDWRFVLSGSYSFTWLCGHVHR-NILSKFTGQAVELFDEEFRHLYASSKPV 296
Query: 213 KYTFFPPKKSHGSCAPPVSRAGGRLLS 239
P + P + A GRL S
Sbjct: 297 MGLKSP--RLVAPVPPGAAPANGRLSS 321
>gi|157311635 FAM83H [Homo sapiens]
Length = 1179
Score = 30.8 bits (68), Expect = 1.2
Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 20/104 (19%)
Query: 110 VQLLHQRGVRVRVVTDCDYMALNGSQIGLLRKAGIQVRHDQDPGYMHHKFAIVDKRVLIT 169
V L H +RVR V Y G G++ KF +VD V+++
Sbjct: 198 VNLHHVDFLRVRTVAGPTYYCRTGKSF---------------KGHVKEKFLLVDCAVVMS 242
Query: 170 GSLN--WTTQAIQNNRENVLITEDDEYVRLFLEEFERIWEQFNP 211
GS + W+ + I + +V E V F EEF ++ Q P
Sbjct: 243 GSYSFMWSFEKIHRSLAHVF---QGELVSSFDEEFRILFAQSEP 283
>gi|45504380 jumonji domain containing 2B [Homo sapiens]
Length = 1096
Score = 30.4 bits (67), Expect = 1.5
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 31 RSRRRRPRREAPFFPSQVTCTEALLRAPGAEL---------AELPEGCPCGLPHGESA 79
RS+ ++P+ E P FP + T ALL G + E E P LPHG A
Sbjct: 377 RSQPKKPKPEDPKFPGEGTAGAALLEEAGGSVKEEAGPEVDPEEEEEEPQPLPHGREA 434
>gi|116235448 hypothetical protein LOC81610 [Homo sapiens]
Length = 615
Score = 30.4 bits (67), Expect = 1.5
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 24/118 (20%)
Query: 94 LDLCLFAFSSPQLGHAVQLLHQRGVRVRVVTDCDYMALNGSQIGLLRKAGIQVRHDQDPG 153
LD+C+ P+ ++ + VR +T Y A +G++I G
Sbjct: 233 LDMCMDLKVHPE--------QEKLMTVRTITGNIYYARSGTKI---------------IG 269
Query: 154 YMHHKFAIVDKRVLITGSLNWTTQAIQNNRENVLITEDDEYVRLFLEEFERIWEQFNP 211
+H KF ++D + TGS ++T + N N++I + V F EF ++ Q P
Sbjct: 270 KVHEKFTLIDGIRVATGSYSFTWTDGKLNSSNLVIL-SGQVVEHFDLEFRILYAQSKP 326
>gi|4759066 sodium channel, voltage-gated, type II, beta [Homo
sapiens]
Length = 215
Score = 30.0 bits (66), Expect = 2.0
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 171 SLNWTTQAIQNNRENVLITEDDEYVRLFLEEF-ERIWEQFNPTKY 214
SLNWT Q N E + + + + L LE F +R+ NP+KY
Sbjct: 64 SLNWTYQECNNCSEEMFLQFRMKIINLKLERFQDRVEFSGNPSKY 108
>gi|38788416 laminin, alpha 1 precursor [Homo sapiens]
Length = 3075
Score = 29.6 bits (65), Expect = 2.6
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 44 FPSQVTCTEALLRAPGAELAELPEGCPCGLPHGESALSRLLRALLAAR--ASLDLCLFAF 101
FP Q AL PGA L + LP +SA+ + L L+ R AS L +
Sbjct: 2697 FPEQCVVDAALEYVPGAHQFGLTQNSHFILPFNQSAVRKKLSVELSIRTFASSGLIYYMA 2756
Query: 102 SSPQLGHAVQLLH 114
Q +AV LH
Sbjct: 2757 HQNQADYAVLQLH 2769
>gi|121114304 fms-related tyrosine kinase 3 [Homo sapiens]
Length = 993
Score = 29.6 bits (65), Expect = 2.6
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 194 YVRLFLEEFERIW-EQFNPTKYTFFPPKKSHGSCAPPVSR 232
Y+R E+F R W E F ++F+P +SH + + P SR
Sbjct: 702 YLRSKREKFHRTWTEIFKEHNFSFYPTFQSHPNSSMPGSR 741
>gi|38455416 fms-related tyrosine kinase 3 ligand [Homo sapiens]
Length = 235
Score = 29.3 bits (64), Expect = 3.4
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 16 LALTLEALPWVLRWLRSRRRRPR--REAPFFPS 46
+ L L A W L W R+RRR PR + P PS
Sbjct: 194 VGLLLLAAAWCLHWQRTRRRTPRPGEQVPPVPS 226
>gi|70610136 poly (ADP-ribose) glycohydrolase [Homo sapiens]
Length = 976
Score = 29.3 bits (64), Expect = 3.4
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 71 CGLPHGESALSRLLRALLAARASLDLCLFAFSSPQLGHAVQLLH 114
CG G++ L L++ L AA A D+ F F +L + +H
Sbjct: 872 CGAFGGDARLKALIQILAAAAAERDVVYFTFGDSELMRDIYSMH 915
>gi|224994189 prominin 1 isoform 2 [Homo sapiens]
Length = 856
Score = 27.7 bits (60), Expect = 9.9
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 161 IVDKRVLITGSLNWTTQAIQNNRENVLITEDDEYVRLFLEEFERI--WEQFN 210
++++ I SL++ I NN +V+I E +Y R + FE W +F+
Sbjct: 700 LLERVTRILASLDFAQNFITNNTSSVIIEETKKYGRTIIGYFEHYLQWIEFS 751
>gi|224994199 prominin 1 isoform 4 [Homo sapiens]
Length = 825
Score = 27.7 bits (60), Expect = 9.9
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 161 IVDKRVLITGSLNWTTQAIQNNRENVLITEDDEYVRLFLEEFERI--WEQFN 210
++++ I SL++ I NN +V+I E +Y R + FE W +F+
Sbjct: 700 LLERVTRILASLDFAQNFITNNTSSVIIEETKKYGRTIIGYFEHYLQWIEFS 751
>gi|224994197 prominin 1 isoform 5 [Homo sapiens]
Length = 833
Score = 27.7 bits (60), Expect = 9.9
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 161 IVDKRVLITGSLNWTTQAIQNNRENVLITEDDEYVRLFLEEFERI--WEQFN 210
++++ I SL++ I NN +V+I E +Y R + FE W +F+
Sbjct: 700 LLERVTRILASLDFAQNFITNNTSSVIIEETKKYGRTIIGYFEHYLQWIEFS 751
>gi|224994195 prominin 1 isoform 6 [Homo sapiens]
Length = 834
Score = 27.7 bits (60), Expect = 9.9
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 161 IVDKRVLITGSLNWTTQAIQNNRENVLITEDDEYVRLFLEEFERI--WEQFN 210
++++ I SL++ I NN +V+I E +Y R + FE W +F+
Sbjct: 709 LLERVTRILASLDFAQNFITNNTSSVIIEETKKYGRTIIGYFEHYLQWIEFS 760
>gi|224994193 prominin 1 isoform 7 [Homo sapiens]
Length = 842
Score = 27.7 bits (60), Expect = 9.9
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 161 IVDKRVLITGSLNWTTQAIQNNRENVLITEDDEYVRLFLEEFERI--WEQFN 210
++++ I SL++ I NN +V+I E +Y R + FE W +F+
Sbjct: 709 LLERVTRILASLDFAQNFITNNTSSVIIEETKKYGRTIIGYFEHYLQWIEFS 760
>gi|224994191 prominin 1 isoform 2 [Homo sapiens]
Length = 856
Score = 27.7 bits (60), Expect = 9.9
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 161 IVDKRVLITGSLNWTTQAIQNNRENVLITEDDEYVRLFLEEFERI--WEQFN 210
++++ I SL++ I NN +V+I E +Y R + FE W +F+
Sbjct: 700 LLERVTRILASLDFAQNFITNNTSSVIIEETKKYGRTIIGYFEHYLQWIEFS 751
>gi|5174387 prominin 1 isoform 1 [Homo sapiens]
Length = 865
Score = 27.7 bits (60), Expect = 9.9
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 161 IVDKRVLITGSLNWTTQAIQNNRENVLITEDDEYVRLFLEEFERI--WEQFN 210
++++ I SL++ I NN +V+I E +Y R + FE W +F+
Sbjct: 709 LLERVTRILASLDFAQNFITNNTSSVIIEETKKYGRTIIGYFEHYLQWIEFS 760
>gi|19718764 ubiquitin protein ligase E3A isoform 3 [Homo sapiens]
Length = 872
Score = 27.7 bits (60), Expect = 9.9
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
Query: 166 VLITGSLNWTTQAIQNN--------RENVLITEDDEYVRLFLEEFERIWEQF 209
+LI GS N QA++ R++VLI E E V F +E +R++ QF
Sbjct: 754 LLICGSRNLDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQF 805
>gi|19718762 ubiquitin protein ligase E3A isoform 1 [Homo sapiens]
Length = 852
Score = 27.7 bits (60), Expect = 9.9
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
Query: 166 VLITGSLNWTTQAIQNN--------RENVLITEDDEYVRLFLEEFERIWEQF 209
+LI GS N QA++ R++VLI E E V F +E +R++ QF
Sbjct: 734 LLICGSRNLDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQF 785
>gi|19718766 ubiquitin protein ligase E3A isoform 2 [Homo sapiens]
Length = 875
Score = 27.7 bits (60), Expect = 9.9
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
Query: 166 VLITGSLNWTTQAIQNN--------RENVLITEDDEYVRLFLEEFERIWEQF 209
+LI GS N QA++ R++VLI E E V F +E +R++ QF
Sbjct: 757 LLICGSRNLDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQF 808
>gi|41151527 PREDICTED: hypothetical protein [Homo sapiens]
Length = 272
Score = 27.7 bits (60), Expect = 9.9
Identities = 36/124 (29%), Positives = 45/124 (36%), Gaps = 11/124 (8%)
Query: 14 VGLALTLEALPWVLRWLRSRR-RRPRREAP--FFPSQVTCTEALLRAPGAELAELPEGCP 70
VG+ A W+ RW R RR RR R+ P PS T PG A P+
Sbjct: 43 VGVGSHAAAKRWLGRWRRKRRWRRVRKAGPRDLLPSAPTPD-----PPGP--APSPKDLD 95
Query: 71 CGLPHGESALSRLLRALLAARASLDLCLFAFSSPQLGHAVQLLHQRGVRVRVVTDCDYMA 130
G R LR L+ + + L F P L H H VR V D
Sbjct: 96 LGAQRERWETFRKLRG-LSCEGAAKVLLDTFEYPGLVHHTGGCHCGAVRFAVWAPADLRV 154
Query: 131 LNGS 134
++ S
Sbjct: 155 VDCS 158
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.136 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,247,529
Number of Sequences: 37866
Number of extensions: 443196
Number of successful extensions: 1201
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1192
Number of HSP's gapped (non-prelim): 31
length of query: 252
length of database: 18,247,518
effective HSP length: 100
effective length of query: 152
effective length of database: 14,460,918
effective search space: 2198059536
effective search space used: 2198059536
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.