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Search of human proteins with 30425524
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|30425524 hypothetical protein LOC339669 [Homo sapiens]
(195 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|30425524 hypothetical protein LOC339669 [Homo sapiens] 395 e-111
gi|170650672 Leber congenital amaurosis 5 [Homo sapiens] 33 0.12
gi|170650670 Leber congenital amaurosis 5 [Homo sapiens] 33 0.12
gi|61743948 abl-interactor 1 isoform d [Homo sapiens] 32 0.26
gi|61743944 abl-interactor 1 isoform b [Homo sapiens] 32 0.26
gi|23312386 serine/threonine protein phosphatase with EF-hand mo... 32 0.45
gi|38569495 ELL associated factor 1 [Homo sapiens] 31 0.76
gi|217272890 palmitoyl-protein thioesterase 1 isoform 2 precurso... 30 1.00
gi|4506031 palmitoyl-protein thioesterase 1 isoform 1 precursor ... 30 1.00
gi|61743946 abl-interactor 1 isoform c [Homo sapiens] 30 1.00
gi|36031016 CTCL tumor antigen L14-2 [Homo sapiens] 30 1.7
gi|116734710 ATP-binding cassette, sub-family A member 3 [Homo s... 29 2.2
gi|118421089 chromodomain helicase DNA binding protein 2 isoform... 29 2.2
gi|22749117 hypothetical protein LOC152405 [Homo sapiens] 29 2.2
gi|110611184 chromodomain helicase DNA binding protein 2 isoform... 29 2.2
gi|239754842 PREDICTED: hypothetical protein [Homo sapiens] 29 2.9
gi|239749379 PREDICTED: hypothetical protein XP_002347025 [Homo ... 29 2.9
gi|239743516 PREDICTED: hypothetical protein XP_002342865 [Homo ... 29 2.9
gi|34452681 ring finger protein 10 [Homo sapiens] 29 2.9
gi|4758646 kinesin family member 3B [Homo sapiens] 28 3.8
gi|31542244 leucine rich repeat and fibronectin type III domain ... 28 3.8
gi|208022661 hypothetical protein LOC57701 [Homo sapiens] 28 3.8
gi|15529980 leucine rich repeat containing 46 [Homo sapiens] 28 3.8
gi|239754450 PREDICTED: hypothetical protein [Homo sapiens] 28 4.9
gi|239748999 PREDICTED: hypothetical protein [Homo sapiens] 28 4.9
gi|4502901 clathrin, light polypeptide isoform a [Homo sapiens] 28 4.9
gi|209862789 microtubule associated monoxygenase, calponin and L... 28 4.9
gi|170016069 zinc finger, CCHC domain containing 2 [Homo sapiens] 28 4.9
gi|199559779 coiled-coil domain containing 8 [Homo sapiens] 28 4.9
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 28 6.5
>gi|30425524 hypothetical protein LOC339669 [Homo sapiens]
Length = 195
Score = 395 bits (1016), Expect = e-111
Identities = 195/195 (100%), Positives = 195/195 (100%)
Query: 1 MDPQSRSLKNAGSRSSSRENRATSGEGAQPCQGTDDGPSLGAQDQRSTPTNQKGSIIPNN 60
MDPQSRSLKNAGSRSSSRENRATSGEGAQPCQGTDDGPSLGAQDQRSTPTNQKGSIIPNN
Sbjct: 1 MDPQSRSLKNAGSRSSSRENRATSGEGAQPCQGTDDGPSLGAQDQRSTPTNQKGSIIPNN 60
Query: 61 IRHKFGSNVVDQLVSEEQAQKAIDEVFEGQKRASSWPSRTQNPVEISSVFSDYYDLGYNM 120
IRHKFGSNVVDQLVSEEQAQKAIDEVFEGQKRASSWPSRTQNPVEISSVFSDYYDLGYNM
Sbjct: 61 IRHKFGSNVVDQLVSEEQAQKAIDEVFEGQKRASSWPSRTQNPVEISSVFSDYYDLGYNM 120
Query: 121 RSNLFRGAAEETKSLMKASYTPEVIEKSVRDLEHWHGRKTDDLGRWHQKNAMNLNLQKAL 180
RSNLFRGAAEETKSLMKASYTPEVIEKSVRDLEHWHGRKTDDLGRWHQKNAMNLNLQKAL
Sbjct: 121 RSNLFRGAAEETKSLMKASYTPEVIEKSVRDLEHWHGRKTDDLGRWHQKNAMNLNLQKAL 180
Query: 181 EEKYGENSKSKSSKY 195
EEKYGENSKSKSSKY
Sbjct: 181 EEKYGENSKSKSSKY 195
>gi|170650672 Leber congenital amaurosis 5 [Homo sapiens]
Length = 697
Score = 33.5 bits (75), Expect = 0.12
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 38 PSLGAQDQRSTPTNQKGSII--PNNIRHKFGSNVVDQLVSEEQAQKAIDEVFEGQKRASS 95
PS +RS P +QK S + N K + VD + +E+ ++++F G +S+
Sbjct: 558 PSFAKTSERSNPFSQKSSFLDFQRNSMEKLSKDGVDLITRKEKKANLMEQLF-GASGSST 616
Query: 96 WPSRTQNPVEISSVFSDYYDLGY 118
S++ +P ++S D L +
Sbjct: 617 ISSKSSDPNSVASSKGDIDPLNF 639
>gi|170650670 Leber congenital amaurosis 5 [Homo sapiens]
Length = 697
Score = 33.5 bits (75), Expect = 0.12
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 38 PSLGAQDQRSTPTNQKGSII--PNNIRHKFGSNVVDQLVSEEQAQKAIDEVFEGQKRASS 95
PS +RS P +QK S + N K + VD + +E+ ++++F G +S+
Sbjct: 558 PSFAKTSERSNPFSQKSSFLDFQRNSMEKLSKDGVDLITRKEKKANLMEQLF-GASGSST 616
Query: 96 WPSRTQNPVEISSVFSDYYDLGY 118
S++ +P ++S D L +
Sbjct: 617 ISSKSSDPNSVASSKGDIDPLNF 639
>gi|61743948 abl-interactor 1 isoform d [Homo sapiens]
Length = 476
Score = 32.3 bits (72), Expect = 0.26
Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 2/107 (1%)
Query: 1 MDPQSRSLKNAGSRSSSRENRATSGEGAQPCQGTDDGPSLGAQDQRSTPTNQKGSIIPNN 60
++ + R+ + S SREN +S G T P++G S P +Q G++
Sbjct: 227 LNQRPRTHSGSSGGSGSRENSGSSSIGIPIAVPTPSPPTIGPAAPGSAPGSQYGTMTRQI 286
Query: 61 IRHKFGSNVVDQLVSEEQAQKAIDEVFEGQKRASSWPSRTQNPVEIS 107
RH S + ++ F Q + P +QN + I+
Sbjct: 287 SRH--NSTTSSTSSGGYRRTPSVTAQFSAQPHVNGGPLYSQNSISIA 331
>gi|61743944 abl-interactor 1 isoform b [Homo sapiens]
Length = 481
Score = 32.3 bits (72), Expect = 0.26
Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 2/107 (1%)
Query: 1 MDPQSRSLKNAGSRSSSRENRATSGEGAQPCQGTDDGPSLGAQDQRSTPTNQKGSIIPNN 60
++ + R+ + S SREN +S G T P++G S P +Q G++
Sbjct: 232 LNQRPRTHSGSSGGSGSRENSGSSSIGIPIAVPTPSPPTIGPAAPGSAPGSQYGTMTRQI 291
Query: 61 IRHKFGSNVVDQLVSEEQAQKAIDEVFEGQKRASSWPSRTQNPVEIS 107
RH S + ++ F Q + P +QN + I+
Sbjct: 292 SRH--NSTTSSTSSGGYRRTPSVTAQFSAQPHVNGGPLYSQNSISIA 336
>gi|23312386 serine/threonine protein phosphatase with EF-hand
motifs 2 [Homo sapiens]
Length = 753
Score = 31.6 bits (70), Expect = 0.45
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 3 PQSRSLKNAGSRSSSRENRATSGEGAQPCQGTDDGPSLGAQDQRS 47
P+SRSL ++ R S + + TS + PC G+ DG L Q + S
Sbjct: 349 PESRSLPSSPLRLGSYKAQKTSRSSSIPCSGSLDGRELSRQVRSS 393
>gi|38569495 ELL associated factor 1 [Homo sapiens]
Length = 268
Score = 30.8 bits (68), Expect = 0.76
Identities = 16/73 (21%), Positives = 36/73 (49%)
Query: 10 NAGSRSSSRENRATSGEGAQPCQGTDDGPSLGAQDQRSTPTNQKGSIIPNNIRHKFGSNV 69
++GS SS E+ + S + + G D+GP+ Q P N + ++ R + + +
Sbjct: 190 SSGSSSSDSESSSGSDDDSSSSGGEDNGPASPPQPSHQQPYNSRPAVANGTSRPQGSNQL 249
Query: 70 VDQLVSEEQAQKA 82
++ L ++ Q ++
Sbjct: 250 MNTLRNDLQLSES 262
>gi|217272890 palmitoyl-protein thioesterase 1 isoform 2 precursor
[Homo sapiens]
Length = 203
Score = 30.4 bits (67), Expect = 1.00
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 133 KSLMKASYTPEVIEKSVRDLEHWHGRKTDDLGRWHQKNAMNLNLQKALEEKYGEN 187
K+L +Y+ V E+ V+ E+WH +D+ R H ++N ++ + E Y +N
Sbjct: 62 KTLNAGAYSKVVQERLVQ-AEYWHDPIKEDVYRNHSIFLADINQERGINESYKKN 115
>gi|4506031 palmitoyl-protein thioesterase 1 isoform 1 precursor
[Homo sapiens]
Length = 306
Score = 30.4 bits (67), Expect = 1.00
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 133 KSLMKASYTPEVIEKSVRDLEHWHGRKTDDLGRWHQKNAMNLNLQKALEEKYGEN 187
K+L +Y+ V E+ V+ E+WH +D+ R H ++N ++ + E Y +N
Sbjct: 165 KTLNAGAYSKVVQERLVQ-AEYWHDPIKEDVYRNHSIFLADINQERGINESYKKN 218
>gi|61743946 abl-interactor 1 isoform c [Homo sapiens]
Length = 452
Score = 30.4 bits (67), Expect = 1.00
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 2/104 (1%)
Query: 1 MDPQSRSLKNAGSRSSSRENRATSGEGAQPCQGTDDGPSLGAQDQRSTPTNQKGSIIPNN 60
++ + R+ + S SREN +S G T P++G S P +Q G++
Sbjct: 232 LNQRPRTHSGSSGGSGSRENSGSSSIGIPIAVPTPSPPTIGPAAPGSAPGSQYGTMTRQI 291
Query: 61 IRHKFGSNVVDQLVSEEQAQKAIDEVFEGQKRASSWPSRTQNPV 104
RH S + ++ F Q + P +QN +
Sbjct: 292 SRH--NSTTSSTSSGGYRRTPSVTAQFSAQPHVNGGPLYSQNSI 333
>gi|36031016 CTCL tumor antigen L14-2 [Homo sapiens]
Length = 898
Score = 29.6 bits (65), Expect = 1.7
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 20/109 (18%)
Query: 62 RHKFGSNVVDQLVSEEQAQKAIDEVFEG--QKRASSWPSRTQNPVEISSVFSDYYDLGYN 119
R K S++ D +QA++ +D+V G K SS SR+ + + N
Sbjct: 684 RRKHASSIKDLTKQLQQARRKLDQVESGSYDKEVSSMGSRSSSSGSL------------N 731
Query: 120 MRSNLFRGAAEETKSLMKASYTPEV-----IEKSVRDLEHWHGRKTDDL 163
RS+ + E T S + P+V IE+ VR L+ H RK + +
Sbjct: 732 ARSSAEDRSPENTGSSVAVDNFPQVDKAMLIERIVR-LQKAHARKNEKI 779
>gi|116734710 ATP-binding cassette, sub-family A member 3 [Homo
sapiens]
Length = 1704
Score = 29.3 bits (64), Expect = 2.2
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 102 NPVEISSVFSDYYDLGYNMRSNLFRGAAEETKSLMKASYTPEVIEKSVRDLEHWH--GRK 159
+P + S F Y L ++S + A EE K+ + ++ V+E + + H+H GR
Sbjct: 1597 SPQHLKSKFGSGYSLRAKVQSEGQQEALEEFKAFVDLTFPGSVLEDEHQGMVHYHLPGR- 1655
Query: 160 TDDLGRWHQKNAMNLNLQKALEEKYGENSKSKS 192
DL W A + + +EKYG + S S
Sbjct: 1656 --DLS-W----AKVFGILEKAKEKYGVDDYSVS 1681
>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
[Homo sapiens]
Length = 1828
Score = 29.3 bits (64), Expect = 2.2
Identities = 32/160 (20%), Positives = 67/160 (41%), Gaps = 26/160 (16%)
Query: 10 NAGSRSSSRE-NRATSGEGAQPCQGTDDGPSLGAQDQRSTPTNQKGSIIPNNIRHKFGSN 68
NA S S+S E + + SG ++ QG+D G G++ S+ +++ S
Sbjct: 18 NASSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQS------------- 64
Query: 69 VVDQLVSEEQAQKAIDEVFEGQKRASSWPSRTQNPVEISSVFSDYYDLGYNMRSNLFR-- 126
+ SE K+ + E +++ + S+ + ++ ++ +Y D+ RSN R
Sbjct: 65 ---ESESESAGSKSQPVLPEAKEKPA---SKKERIADVKKMWEEYPDVYGVRRSNRSRQE 118
Query: 127 ----GAAEETKSLMKASYTPEVIEKSVRDLEHWHGRKTDD 162
EE S ++ ++ ++ E W ++D
Sbjct: 119 PSRFNIKEEASSGSESGSPKRRGQRQLKKQEKWKQEPSED 158
>gi|22749117 hypothetical protein LOC152405 [Homo sapiens]
Length = 536
Score = 29.3 bits (64), Expect = 2.2
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 4 QSRSLKNAGSRSSSRENRATSGEGAQPCQGTDDGPSLGAQDQ-RSTPTNQ---KGSIIPN 59
+S A + + + +T G+ + D L A DQ TP+ Q K S N
Sbjct: 64 ESSIFSQATNGVAEQNGHSTPGQAGRRASNPADVSDLRADDQVNQTPSEQTKGKASSQAN 123
Query: 60 NIRHKFGSNVVDQLVSEEQAQK 81
N++H+ V L E A++
Sbjct: 124 NVQHEQSDGQVSGLTEERTAEQ 145
>gi|110611184 chromodomain helicase DNA binding protein 2 isoform 2
[Homo sapiens]
Length = 501
Score = 29.3 bits (64), Expect = 2.2
Identities = 32/160 (20%), Positives = 67/160 (41%), Gaps = 26/160 (16%)
Query: 10 NAGSRSSSRE-NRATSGEGAQPCQGTDDGPSLGAQDQRSTPTNQKGSIIPNNIRHKFGSN 68
NA S S+S E + + SG ++ QG+D G G++ S+ +++ S
Sbjct: 18 NASSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQS------------- 64
Query: 69 VVDQLVSEEQAQKAIDEVFEGQKRASSWPSRTQNPVEISSVFSDYYDLGYNMRSNLFR-- 126
+ SE K+ + E +++ + S+ + ++ ++ +Y D+ RSN R
Sbjct: 65 ---ESESESAGSKSQPVLPEAKEKPA---SKKERIADVKKMWEEYPDVYGVRRSNRSRQE 118
Query: 127 ----GAAEETKSLMKASYTPEVIEKSVRDLEHWHGRKTDD 162
EE S ++ ++ ++ E W ++D
Sbjct: 119 PSRFNIKEEASSGSESGSPKRRGQRQLKKQEKWKQEPSED 158
>gi|239754842 PREDICTED: hypothetical protein [Homo sapiens]
Length = 123
Score = 28.9 bits (63), Expect = 2.9
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 3 PQSRSLKNAGSRSSSRENRATSGEGAQPCQGTDDGPSLGAQDQRSTPTNQKGSIIPNNIR 62
P + +LK +RS +RA G GA+P + GP + + +GSI+P
Sbjct: 14 PTTTNLKVLWTRSRGLASRAGLGPGARPARARALGPCCPMEVGSAPRPPPRGSILPAEEP 73
Query: 63 H 63
H
Sbjct: 74 H 74
>gi|239749379 PREDICTED: hypothetical protein XP_002347025 [Homo
sapiens]
Length = 123
Score = 28.9 bits (63), Expect = 2.9
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 3 PQSRSLKNAGSRSSSRENRATSGEGAQPCQGTDDGPSLGAQDQRSTPTNQKGSIIPNNIR 62
P + +LK +RS +RA G GA+P + GP + + +GSI+P
Sbjct: 14 PTTTNLKVLWTRSRGLASRAGLGPGARPARARALGPCCPMEVGSAPRPPPRGSILPAEEP 73
Query: 63 H 63
H
Sbjct: 74 H 74
>gi|239743516 PREDICTED: hypothetical protein XP_002342865 [Homo
sapiens]
Length = 123
Score = 28.9 bits (63), Expect = 2.9
Identities = 18/61 (29%), Positives = 28/61 (45%)
Query: 3 PQSRSLKNAGSRSSSRENRATSGEGAQPCQGTDDGPSLGAQDQRSTPTNQKGSIIPNNIR 62
P + +LK +RS +RA G GA+P + GP + + +GSI+P
Sbjct: 14 PTTTNLKVLWTRSRGLASRAGLGPGARPARARALGPCCPMEVGSAPRPPPRGSILPAEEP 73
Query: 63 H 63
H
Sbjct: 74 H 74
>gi|34452681 ring finger protein 10 [Homo sapiens]
Length = 811
Score = 28.9 bits (63), Expect = 2.9
Identities = 36/137 (26%), Positives = 54/137 (39%), Gaps = 27/137 (19%)
Query: 9 KNAGSRSSSRENRATSGEGAQPCQGTDDGPSLGAQDQRSTPTNQKGSIIPNNIRHKFGSN 68
KN+GS SSS + S +G QP + GP+ G +S N GS N R
Sbjct: 17 KNSGSNSSSAS--SGSSKGQQPPRSASAGPA-GESKPKSDGKNSSGSKRYNRKR------ 67
Query: 69 VVDQLVSEEQAQKAIDEVFEGQ-KRASSWPSRTQN--PVEISSVFSDYYDLGYNMRSNLF 125
+ +E F Q +R+SS S+T N P + S + +N
Sbjct: 68 ---------ELSYPKNESFNNQSRRSSSQKSKTFNKMPPQRGGGSSKLFSSSFN------ 112
Query: 126 RGAAEETKSLMKASYTP 142
G +E +A ++P
Sbjct: 113 GGRRDEVAEAQRAEFSP 129
>gi|4758646 kinesin family member 3B [Homo sapiens]
Length = 747
Score = 28.5 bits (62), Expect = 3.8
Identities = 23/124 (18%), Positives = 52/124 (41%), Gaps = 16/124 (12%)
Query: 66 GSNVVD-----QLVSEEQAQKAIDEVFEGQKRASSWPSRTQNPVEISSVFSDYYDLGYNM 120
G N+VD Q + E++ Q+ ++ ++ SR + +E+ +S
Sbjct: 478 GKNIVDHTNEQQKILEQKRQEIAEQKRREREIQQQMESRDEETLELKETYS--------- 528
Query: 121 RSNLFRGAAEETKSLMKASYTPEVIEKSVRDLEHWHGRKTDDLGRWHQKNAMNLNLQKAL 180
+L + +TK L K + ++ + DL+ H ++ +L + + L L+ +
Sbjct: 529 --SLQQEVDIKTKKLKKLFSKLQAVKAEIHDLQEEHIKERQELEQTQNELTRELKLKHLI 586
Query: 181 EEKY 184
E +
Sbjct: 587 IENF 590
>gi|31542244 leucine rich repeat and fibronectin type III domain
containing 5 [Homo sapiens]
Length = 719
Score = 28.5 bits (62), Expect = 3.8
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 16/82 (19%)
Query: 2 DPQSRSLKNAGSRSSSRENRATSGEGAQPCQGTDDGPSLGAQDQRSTPTNQKGSIIPNNI 61
+PQ+ ++ N S++++R N ++P +G PT+++ I PN +
Sbjct: 654 EPQNEAVTNVESQNTNRNNSTALQLASRPPDSVTEG-----------PTSKRAHIKPNAL 702
Query: 62 RHKFGSNVVDQLVSEEQAQKAI 83
VDQ+V E Q + I
Sbjct: 703 LTN-----VDQIVQETQRLELI 719
>gi|208022661 hypothetical protein LOC57701 [Homo sapiens]
Length = 1334
Score = 28.5 bits (62), Expect = 3.8
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 3 PQSRSLKNAGSRSSSRENRATSGEGAQPCQGTDDGPSLGAQDQRSTPTNQK 53
PQ +SL AGS S R +P QG+ P D STP +
Sbjct: 618 PQEKSLDKAGSESPHPGRRTPGNSSKKPSQGSGRRPG----DPGSTPLRDR 664
>gi|15529980 leucine rich repeat containing 46 [Homo sapiens]
Length = 321
Score = 28.5 bits (62), Expect = 3.8
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 24 SGEGAQPCQGTDDGPSLGAQDQRSTPTNQKGSIIPNNIRHKF 65
S A P QG + P + Q S+PT + S+IP + F
Sbjct: 248 SSPSATPAQGEETVPEAVSSPQASSPTKKPCSLIPRGHQSSF 289
>gi|239754450 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 28.1 bits (61), Expect = 4.9
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 2 DPQSRSLKNAGSRSSSRENRATSGEGAQPCQGTDDG--PSLGAQDQRSTPTNQKG 54
+P S LK + ++SR SG GA P TD G P G + S T KG
Sbjct: 28 EPPSSGLKISAIPAASR-----SGPGASPTVNTDPGLLPKWGREQAASRETGWKG 77
>gi|239748999 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 28.1 bits (61), Expect = 4.9
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 2 DPQSRSLKNAGSRSSSRENRATSGEGAQPCQGTDDG--PSLGAQDQRSTPTNQKG 54
+P S LK + ++SR SG GA P TD G P G + S T KG
Sbjct: 28 EPPSSGLKISAIPAASR-----SGPGASPTVNTDPGLLPKWGREQAASRETGWKG 77
>gi|4502901 clathrin, light polypeptide isoform a [Homo sapiens]
Length = 211
Score = 28.1 bits (61), Expect = 4.9
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 7/47 (14%)
Query: 146 EKSVRDLEHWHGRKTDDLGRWHQKNAMNLNLQKALEEKYGENSKSKS 192
EK+ +DLE W+ R+++ + +KN +N +A EE + + SK ++
Sbjct: 130 EKAKKDLEEWNQRQSEQV----EKNKIN---NRASEEAFVKESKEET 169
>gi|209862789 microtubule associated monoxygenase, calponin and LIM
domain containing 3 isoform 1 [Homo sapiens]
Length = 2002
Score = 28.1 bits (61), Expect = 4.9
Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 9/144 (6%)
Query: 4 QSRSLKNAGSRSSSRENRATSGEGAQPCQGTDDGPSLGAQDQRSTPTNQ--KGSIIPNNI 61
+S++L++A +R SR + GA + PS G + + +PT +GS P +
Sbjct: 1605 KSQALRDAMARQLSRMQQMELASGAPRPRKASSAPSQGKERRPDSPTRPTLRGSEEP-TL 1663
Query: 62 RHKFGSNVVDQLVSEEQAQKAIDEVFEG----QKRASSWPSRTQNPVEISSVFSDYYDLG 117
+H+ S V S+ EG K+ SS S +N E S
Sbjct: 1664 KHEATSEEVLSPPSDSGGPDGSFTSSEGSSGKSKKRSSLFSPRRNKKEKKSKGEGRPP-- 1721
Query: 118 YNMRSNLFRGAAEETKSLMKASYT 141
SNL AA + KSL K+ ++
Sbjct: 1722 EKPSSNLLEEAAAKPKSLWKSVFS 1745
>gi|170016069 zinc finger, CCHC domain containing 2 [Homo sapiens]
Length = 1178
Score = 28.1 bits (61), Expect = 4.9
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 6 RSLKNAGSRSSSRENRATSGEGAQPCQGTDDGPSLGAQDQR 46
R+ + GSR + + R G+G Q + GP G + R
Sbjct: 206 RAARGEGSRGGAEDERGEDGDGEQDAEKDGSGPEGGIVEPR 246
>gi|199559779 coiled-coil domain containing 8 [Homo sapiens]
Length = 538
Score = 28.1 bits (61), Expect = 4.9
Identities = 19/90 (21%), Positives = 38/90 (42%)
Query: 14 RSSSRENRATSGEGAQPCQGTDDGPSLGAQDQRSTPTNQKGSIIPNNIRHKFGSNVVDQL 73
R + +N+ Q QGTD+ A +QR+ +GS + +N R + + ++
Sbjct: 360 REEAADNQRAEAPADQRSQGTDNHREEAADNQRAEAPADQGSEVTDNQREEAVHDQRERA 419
Query: 74 VSEEQAQKAIDEVFEGQKRASSWPSRTQNP 103
+ + A + GQ+ ++ R P
Sbjct: 420 PAVQGADNQRAQARAGQRAEAAHNQRAGAP 449
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 27.7 bits (60), Expect = 6.5
Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 10/127 (7%)
Query: 13 SRSSSRENRATSGEGAQPCQGTDDGPSLGAQDQRSTPTNQKGSIIPNNIRHKFGSNVVDQ 72
SR R++ A S + D Q +R P +K S P N+ K +VD
Sbjct: 1377 SRKRKRDSDAGSSTPTTSTRSRDKDDESKKQKKRGRPPAEKLSPNPPNLTKKM-KKIVDA 1435
Query: 73 LVS-EEQAQKAIDEVFEGQKRASSWPSRTQNP--VEISSVFSDYYDLGYNMRSNLFRGAA 129
++ ++ + + + EVF PSR + P E+ D+ + +R++ +R
Sbjct: 1436 VIKYKDSSGRQLSEVF------IQLPSRKELPEYYELIRKPVDFKKIKERIRNHKYRSLN 1489
Query: 130 EETKSLM 136
+ K +M
Sbjct: 1490 DLEKDVM 1496
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.307 0.123 0.348
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,993,311
Number of Sequences: 37866
Number of extensions: 295727
Number of successful extensions: 1021
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1003
Number of HSP's gapped (non-prelim): 41
length of query: 195
length of database: 18,247,518
effective HSP length: 97
effective length of query: 98
effective length of database: 14,574,516
effective search space: 1428302568
effective search space used: 1428302568
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.