Guide to the Human Genome
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Name: PPT1 Sequence: fasta or formatted (306aa) NCBI GI: 4506031
Description:

palmitoyl-protein thioesterase 1 isoform 1 precursor

Referenced in:

Lysosomes and Related Organelles

Other entries for this name:
alt prot [203aa] palmitoyl-protein thioesterase 1 isoform 2 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         21           1
 C cysteine            2.6          8           2
 D aspartate           4.6         14           1
 E glutamate           5.6         17           2
 F phenylalanine       4.6         14           2
 G glycine             7.5         23           2
 H histidine           2.6          8           1
 I isoleucine          5.6         17           2
 K lysine              5.6         17           2
 L leucine            11.1         34           2
 M methionine          3.3         10           1
 N asparagine          4.2         13           1
 P proline             5.9         18           2
 Q glutamine           5.9         18           2
 R arginine            3.3         10           1
 S serine              6.5         20           2
 T threonine           2.9          9           2
 V valine              6.5         20           2
 W tryptophan          2.0          6           1
 Y tyrosine            2.9          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   palmitoyl-protein thioesterase 1 isoform 1 precursor ... 
PPT1                  0.515   palmitoyl-protein thioesterase 1 isoform 2 precurso...
PPT2                  0.089   palmitoyl-protein thioesterase 2 isoform a precursor...
PPT2                  0.089   palmitoyl-protein thioesterase 2 isoform b precursor...
UBE3B                 0.012   ubiquitin protein ligase E3B 
UBE3B                 0.012   ubiquitin protein ligase E3B 
C22orf33              0.008   hypothetical protein LOC339669 
ZFY                   0.007   zinc finger protein, Y-linked isoform 1 
ZFY                   0.007   zinc finger protein, Y-linked isoform 2 
MYST2                 0.007   MYST histone acetyltransferase 2 
CCDC73                0.007   sarcoma antigen NY-SAR-79 
CABC1                 0.007   chaperone, ABC1 activity of bc1 complex like precurs...
SETD4                 0.007   SET domain containing 4 isoform c 
TRAF3IP3              0.007   TRAF3-interacting JNK-activating modulator 
SETD4                 0.007   SET domain containing 4 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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